AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123260 MtrunA17_Chr7g0262621 95.683 139 5 1 1 139 1 138 4.32e-93 265
Msa1123260 MtrunA17_Chr1g0182931 57.971 138 47 3 11 138 11 147 6.85e-34 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123260 AT2G20260.1 52.667 150 48 3 6 139 3 145 4.24e-38 126
Msa1123260 AT4G28750.1 66.355 107 25 1 43 138 35 141 5.65e-32 111

Find 44 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACTGCTATCAATTTA+AGG 0.157746 7_3:-74097482 Msa1123260:three_prime_UTR
TAATTCAAGTTGCTAGATTA+AGG 0.232537 7_3:-74097672 Msa1123260:three_prime_UTR
TTGTCACCTAATAATGTTTC+AGG 0.245319 7_3:-74098559 Msa1123260:CDS
CCAATTCTAGACTTGTTGTT+AGG 0.258382 7_3:-74098468 Msa1123260:CDS
CTGTTGCCTGAAACATTATT+AGG 0.270995 7_3:+74098553 None:intergenic
ACACACCTTAGCACCTCTTT+TGG 0.283501 7_3:+74098369 None:intergenic
TTGTTGAATCTTACCACAAC+TGG 0.285947 7_3:+74097786 None:intergenic
ACAACTGGGTAGCGAGTATT+AGG 0.348189 7_3:+74097801 None:intergenic
AACATAGCATCAGCAGCTTC+AGG 0.370983 7_3:-74098589 Msa1123260:CDS
TCCTACTGGTTCAATGGTAT+TGG 0.371489 7_3:-74097941 Msa1123260:CDS
TTCTGTTGTTGCTGTTGATC+AGG 0.388075 7_3:-74097918 Msa1123260:intron
TTAAGTATTATCTGTTTATG+AGG 0.388300 7_3:+74097550 None:intergenic
CCTAACAACAAGTCTAGAAT+TGG 0.406311 7_3:+74098468 None:intergenic
ATCAACAAACAACTATGCTT+TGG 0.412222 7_3:-74097745 Msa1123260:CDS
CATTACTGCTATCAATTTAA+GGG 0.415110 7_3:-74097481 Msa1123260:three_prime_UTR
TTGGTGTTCTTTGTAGTAGT+AGG 0.427451 7_3:+74098487 None:intergenic
ATTCATTTAAATTATAAAGA+GGG 0.435722 7_3:+74097513 None:intergenic
CTATGCTTTGGATGAGATTG+AGG 0.451083 7_3:-74097733 Msa1123260:CDS
CAATTCTAGACTTGTTGTTA+GGG 0.467358 7_3:-74098467 Msa1123260:CDS
AAAGAATCCTACTGGTTCAA+TGG 0.482430 7_3:-74097947 Msa1123260:CDS
TGGTGTTCTTTGTAGTAGTA+GGG 0.490325 7_3:+74098488 None:intergenic
TATTCATTTAAATTATAAAG+AGG 0.495397 7_3:+74097512 None:intergenic
TTCTTAGAAAAGAATCCTAC+TGG 0.502179 7_3:-74097955 Msa1123260:CDS
GCTGCAACACCAACTGTTGA+AGG 0.512678 7_3:-74098430 Msa1123260:CDS
TTCATTTAAATTATAAAGAG+GGG 0.513168 7_3:+74097514 None:intergenic
TGTGTCATCAAGAGGTAGAA+TGG 0.521038 7_3:+74097594 None:intergenic
AAAGACAAGAACAAAGATTG+AGG 0.522834 7_3:+74098688 None:intergenic
CCACCAATTGGTCCCAAAAG+AGG 0.526898 7_3:-74098382 Msa1123260:CDS
ACATAGCATCAGCAGCTTCA+GGG 0.527887 7_3:-74098588 Msa1123260:CDS
AAGACAAGAACAAAGATTGA+GGG 0.540178 7_3:+74098689 None:intergenic
AAAGACATAGAGAGGTATCA+TGG 0.543623 7_3:-74098620 Msa1123260:exon
ACTTGTTGTTAGGGCATCTG+AGG 0.546313 7_3:-74098458 Msa1123260:CDS
TGGTCCCAAAAGAGGTGCTA+AGG 0.552862 7_3:-74098374 Msa1123260:intron
TGTTGTTAGGGCATCTGAGG+AGG 0.552889 7_3:-74098455 Msa1123260:CDS
GCTGCCTCACCTTCAACAGT+TGG 0.556449 7_3:+74098421 None:intergenic
TAATACTCGCTACCCAGTTG+TGG 0.602018 7_3:-74097799 Msa1123260:CDS
GTATATAATGTGTCATCAAG+AGG 0.613761 7_3:+74097586 None:intergenic
TGTTGAATCTTACCACAACT+GGG 0.616418 7_3:+74097787 None:intergenic
AACACCAACTGTTGAAGGTG+AGG 0.628187 7_3:-74098425 Msa1123260:CDS
ATTAGCATCTAGAATGAACA+TGG 0.637216 7_3:-74098518 Msa1123260:CDS
AGACAAGAACAAAGATTGAG+GGG 0.639133 7_3:+74098690 None:intergenic
TTATCAACAAAGACATAGAG+AGG 0.643873 7_3:-74098628 Msa1123260:five_prime_UTR
TTTGTTGATAATCTAAAGTG+TGG 0.659699 7_3:+74098640 None:intergenic
ACCAATACCATTGAACCAGT+AGG 0.681839 7_3:+74097940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATTTAAATTATAAAGA+GGG + chr7_3:74098693-74098712 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + chr7_3:74098694-74098713 None:intergenic 10.0%
!! ATTCATTTAAATTATAAAGA+GGG + chr7_3:74098693-74098712 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + chr7_3:74098694-74098713 None:intergenic 10.0%
!! AATTAAAGTATACTTTCATA+CGG + chr7_3:74097899-74097918 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - chr7_3:74097920-74097939 Msa1123260:CDS 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - chr7_3:74097926-74097945 Msa1123260:CDS 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - chr7_3:74097927-74097946 Msa1123260:CDS 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - chr7_3:74098205-74098224 Msa1123260:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + chr7_3:74098692-74098711 None:intergenic 15.0%
!! AATTAAAGTATACTTTCATA+CGG + chr7_3:74097899-74097918 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - chr7_3:74097920-74097939 Msa1123260:CDS 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - chr7_3:74097926-74097945 Msa1123260:CDS 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - chr7_3:74097927-74097946 Msa1123260:CDS 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - chr7_3:74098205-74098224 Msa1123260:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + chr7_3:74098692-74098711 None:intergenic 15.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + chr7_3:74097485-74097504 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + chr7_3:74097962-74097981 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + chr7_3:74097963-74097982 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - chr7_3:74097965-74097984 Msa1123260:CDS 20.0%
!! AATTTCCAAATTACAAACTA+GGG + chr7_3:74097991-74098010 None:intergenic 20.0%
!! ATTATAAACTGATAGTAACT+TGG - chr7_3:74098132-74098151 Msa1123260:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + chr7_3:74098173-74098192 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + chr7_3:74098656-74098675 None:intergenic 20.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + chr7_3:74097485-74097504 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + chr7_3:74097962-74097981 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + chr7_3:74097963-74097982 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - chr7_3:74097965-74097984 Msa1123260:CDS 20.0%
!! AATTTCCAAATTACAAACTA+GGG + chr7_3:74097991-74098010 None:intergenic 20.0%
!! ATTATAAACTGATAGTAACT+TGG - chr7_3:74098132-74098151 Msa1123260:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + chr7_3:74098173-74098192 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + chr7_3:74098656-74098675 None:intergenic 20.0%
!!! TTTGTTGATAATCTAAAGTG+TGG + chr7_3:74097566-74097585 None:intergenic 25.0%
! TTCATACGGCATAATTTATT+TGG + chr7_3:74097885-74097904 None:intergenic 25.0%
! CAATTTCCAAATTACAAACT+AGG + chr7_3:74097992-74098011 None:intergenic 25.0%
!! CTAGTTTGTAATTTGGAAAT+TGG - chr7_3:74097990-74098009 Msa1123260:intron 25.0%
! TTGTCAACCAATAATTTAGT+AGG - chr7_3:74098163-74098182 Msa1123260:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - chr7_3:74098531-74098550 Msa1123260:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - chr7_3:74098721-74098740 Msa1123260:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - chr7_3:74098722-74098741 Msa1123260:five_prime_UTR 25.0%
!!! TTTGTTGATAATCTAAAGTG+TGG + chr7_3:74097566-74097585 None:intergenic 25.0%
! TTCATACGGCATAATTTATT+TGG + chr7_3:74097885-74097904 None:intergenic 25.0%
! CAATTTCCAAATTACAAACT+AGG + chr7_3:74097992-74098011 None:intergenic 25.0%
!! CTAGTTTGTAATTTGGAAAT+TGG - chr7_3:74097990-74098009 Msa1123260:intron 25.0%
! TTGTCAACCAATAATTTAGT+AGG - chr7_3:74098163-74098182 Msa1123260:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - chr7_3:74098531-74098550 Msa1123260:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - chr7_3:74098721-74098740 Msa1123260:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - chr7_3:74098722-74098741 Msa1123260:five_prime_UTR 25.0%
AAGACAAGAACAAAGATTGA+GGG + chr7_3:74097517-74097536 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + chr7_3:74097518-74097537 None:intergenic 30.0%
TTATCAACAAAGACATAGAG+AGG - chr7_3:74097575-74097594 Msa1123260:three_prime_UTR 30.0%
TTGTCACCTAATAATGTTTC+AGG - chr7_3:74097644-74097663 Msa1123260:three_prime_UTR 30.0%
! ATTAGCATCTAGAATGAACA+TGG - chr7_3:74097685-74097704 Msa1123260:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - chr7_3:74097736-74097755 Msa1123260:CDS 30.0%
GAAATATGGAATTGGGAAAA+TGG - chr7_3:74097934-74097953 Msa1123260:CDS 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - chr7_3:74098219-74098238 Msa1123260:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - chr7_3:74098248-74098267 Msa1123260:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + chr7_3:74098322-74098341 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - chr7_3:74098320-74098339 Msa1123260:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - chr7_3:74098377-74098396 Msa1123260:CDS 30.0%
ATCCTACACAACACAATAAA+AGG + chr7_3:74098382-74098401 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - chr7_3:74098458-74098477 Msa1123260:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + chr7_3:74098620-74098639 None:intergenic 30.0%
AAGACAAGAACAAAGATTGA+GGG + chr7_3:74097517-74097536 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + chr7_3:74097518-74097537 None:intergenic 30.0%
TTATCAACAAAGACATAGAG+AGG - chr7_3:74097575-74097594 Msa1123260:three_prime_UTR 30.0%
TTGTCACCTAATAATGTTTC+AGG - chr7_3:74097644-74097663 Msa1123260:three_prime_UTR 30.0%
! ATTAGCATCTAGAATGAACA+TGG - chr7_3:74097685-74097704 Msa1123260:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - chr7_3:74097736-74097755 Msa1123260:CDS 30.0%
GAAATATGGAATTGGGAAAA+TGG - chr7_3:74097934-74097953 Msa1123260:CDS 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - chr7_3:74098219-74098238 Msa1123260:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - chr7_3:74098248-74098267 Msa1123260:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + chr7_3:74098322-74098341 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - chr7_3:74098320-74098339 Msa1123260:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - chr7_3:74098377-74098396 Msa1123260:CDS 30.0%
ATCCTACACAACACAATAAA+AGG + chr7_3:74098382-74098401 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - chr7_3:74098458-74098477 Msa1123260:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + chr7_3:74098620-74098639 None:intergenic 30.0%
AGACAAGAACAAAGATTGAG+GGG + chr7_3:74097516-74097535 None:intergenic 35.0%
!! AAAGACATAGAGAGGTATCA+TGG - chr7_3:74097583-74097602 Msa1123260:three_prime_UTR 35.0%
CTGTTGCCTGAAACATTATT+AGG + chr7_3:74097653-74097672 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + chr7_3:74097718-74097737 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + chr7_3:74097719-74097738 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + chr7_3:74097738-74097757 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - chr7_3:74097735-74097754 Msa1123260:CDS 35.0%
! TATGGCCCTAGTTTGTAATT+TGG - chr7_3:74097983-74098002 Msa1123260:intron 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - chr7_3:74098225-74098244 Msa1123260:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - chr7_3:74098256-74098275 Msa1123260:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + chr7_3:74098419-74098438 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + chr7_3:74098420-74098439 None:intergenic 35.0%
AGACAAGAACAAAGATTGAG+GGG + chr7_3:74097516-74097535 None:intergenic 35.0%
!! AAAGACATAGAGAGGTATCA+TGG - chr7_3:74097583-74097602 Msa1123260:three_prime_UTR 35.0%
CTGTTGCCTGAAACATTATT+AGG + chr7_3:74097653-74097672 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + chr7_3:74097718-74097737 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + chr7_3:74097719-74097738 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + chr7_3:74097738-74097757 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - chr7_3:74097735-74097754 Msa1123260:CDS 35.0%
! TATGGCCCTAGTTTGTAATT+TGG - chr7_3:74097983-74098002 Msa1123260:intron 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - chr7_3:74098225-74098244 Msa1123260:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - chr7_3:74098256-74098275 Msa1123260:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + chr7_3:74098419-74098438 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + chr7_3:74098420-74098439 None:intergenic 35.0%
!! TCCTACTGGTTCAATGGTAT+TGG - chr7_3:74098262-74098281 Msa1123260:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + chr7_3:74098266-74098285 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - chr7_3:74098285-74098304 Msa1123260:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - chr7_3:74098470-74098489 Msa1123260:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + chr7_3:74098612-74098631 None:intergenic 40.0%
!! TCCTACTGGTTCAATGGTAT+TGG - chr7_3:74098262-74098281 Msa1123260:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + chr7_3:74098266-74098285 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - chr7_3:74098285-74098304 Msa1123260:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - chr7_3:74098470-74098489 Msa1123260:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + chr7_3:74098612-74098631 None:intergenic 40.0%
AACATAGCATCAGCAGCTTC+AGG - chr7_3:74097614-74097633 Msa1123260:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - chr7_3:74097615-74097634 Msa1123260:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - chr7_3:74097745-74097764 Msa1123260:CDS 45.0%
AACACCAACTGTTGAAGGTG+AGG - chr7_3:74097778-74097797 Msa1123260:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + chr7_3:74097809-74097828 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - chr7_3:74097809-74097828 Msa1123260:intron 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + chr7_3:74097822-74097841 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + chr7_3:74097823-74097842 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + chr7_3:74097836-74097855 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + chr7_3:74097837-74097856 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + chr7_3:74098405-74098424 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - chr7_3:74098404-74098423 Msa1123260:CDS 45.0%
AACATAGCATCAGCAGCTTC+AGG - chr7_3:74097614-74097633 Msa1123260:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - chr7_3:74097615-74097634 Msa1123260:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - chr7_3:74097745-74097764 Msa1123260:CDS 45.0%
AACACCAACTGTTGAAGGTG+AGG - chr7_3:74097778-74097797 Msa1123260:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + chr7_3:74097809-74097828 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - chr7_3:74097809-74097828 Msa1123260:intron 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + chr7_3:74097822-74097841 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + chr7_3:74097823-74097842 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + chr7_3:74097836-74097855 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + chr7_3:74097837-74097856 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + chr7_3:74098405-74098424 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - chr7_3:74098404-74098423 Msa1123260:CDS 45.0%
!! ATTATCATATAAATTAAAAA+GGG + chr7_3:74098035-74098054 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + chr7_3:74098036-74098055 None:intergenic 5.0%
!! ATTATCATATAAATTAAAAA+GGG + chr7_3:74098035-74098054 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + chr7_3:74098036-74098055 None:intergenic 5.0%
! TGTTGTTAGGGCATCTGAGG+AGG - chr7_3:74097748-74097767 Msa1123260:CDS 50.0%
GCTGCAACACCAACTGTTGA+AGG - chr7_3:74097773-74097792 Msa1123260:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + chr7_3:74097821-74097840 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + chr7_3:74097824-74097843 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - chr7_3:74097821-74097840 Msa1123260:intron 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + chr7_3:74097827-74097846 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - chr7_3:74097829-74097848 Msa1123260:intron 50.0%
! TGTTGTTAGGGCATCTGAGG+AGG - chr7_3:74097748-74097767 Msa1123260:CDS 50.0%
GCTGCAACACCAACTGTTGA+AGG - chr7_3:74097773-74097792 Msa1123260:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + chr7_3:74097821-74097840 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + chr7_3:74097824-74097843 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - chr7_3:74097821-74097840 Msa1123260:intron 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + chr7_3:74097827-74097846 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - chr7_3:74097829-74097848 Msa1123260:intron 50.0%
GCTGCCTCACCTTCAACAGT+TGG + chr7_3:74097785-74097804 None:intergenic 55.0%
GCTGCCTCACCTTCAACAGT+TGG + chr7_3:74097785-74097804 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74097470 74098755 74097470 ID=Msa1123260;Name=Msa1123260
chr7_3 mRNA 74097470 74098755 74097470 ID=Msa1123260-mRNA-1;Parent=Msa1123260;Name=Msa1123260-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|3|252|139
chr7_3 exon 74097470 74097826 74097470 ID=Msa1123260-mRNA-1:exon:19704;Parent=Msa1123260-mRNA-1
chr7_3 exon 74097919 74097984 74097919 ID=Msa1123260-mRNA-1:exon:19703;Parent=Msa1123260-mRNA-1
chr7_3 exon 74098375 74098755 74098375 ID=Msa1123260-mRNA-1:exon:19702;Parent=Msa1123260-mRNA-1
chr7_3 five_prime_UTR 74098624 74098755 74098624 ID=Msa1123260-mRNA-1:five_prime_utr;Parent=Msa1123260-mRNA-1
chr7_3 CDS 74098375 74098623 74098375 ID=Msa1123260-mRNA-1:cds;Parent=Msa1123260-mRNA-1
chr7_3 CDS 74097919 74097984 74097919 ID=Msa1123260-mRNA-1:cds;Parent=Msa1123260-mRNA-1
chr7_3 CDS 74097722 74097826 74097722 ID=Msa1123260-mRNA-1:cds;Parent=Msa1123260-mRNA-1
chr7_3 three_prime_UTR 74097470 74097721 74097470 ID=Msa1123260-mRNA-1:three_prime_utr;Parent=Msa1123260-mRNA-1
Gene Sequence

>Msa1123260

ATGGCTAGTTGCAACATAGCATCAGCAGCTTCAGGGTTTGTGTTGTCACCTAATAATGTTTCAGGCAACAGAAACACTAATTTATTAGCATCTAGAATGAACATGGTGATGTACCCTACTACTACAAAGAACACCAATTCTAGACTTGTTGTTAGGGCATCTGAGGAGGCTGCTGCAACACCAACTGTTGAAGGTGAGGCAGCTCCAAAAATCAAGCCCCCACCAATTGGTCCCAAAAGAGGTGCTAAGGTTAAGGTTCTTAGAAAAGAATCCTACTGGTTCAATGGTATTGGTTCTGTTGTTGCTGTTGATCAGGATCCTAATACTCGCTACCCAGTTGTGGTAAGATTCAACAAAGTTAACTATGCAAATGTATCAACAAACAACTATGCTTTGGATGAGATTGAGGAAGTCAAATGA

Protein sequence

>Msa1123260

MASCNIASAASGFVLSPNNVSGNRNTNLLASRMNMVMYPTTTKNTNSRLVVRASEEAAATPTVEGEAAPKIKPPPIGPKRGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK*