AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064490 MtrunA17_Chr1g0166331 96.575 146 5 0 1 146 1 146 9.98e-102 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064490 AT2G33450.1 72.662 139 27 4 15 146 9 143 1.44e-60 184

Find 47 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTAATTGAGTAAA+AGG 0.215746 1_2:+25620312 Msa0064490:three_prime_UTR
GGCCCTGTTTGATTTCTTTC+CGG 0.253338 1_2:-25620086 None:intergenic
ACTGCAATTTCTTTGTCTTA+TGG 0.260657 1_2:-25620129 None:intergenic
TGAGAAGAGGCAGATAAGAT+TGG 0.358751 1_2:+25618216 Msa0064490:five_prime_UTR
AAGAGAGTTTGGTGGGAAGC+TGG 0.407615 1_2:+25620169 Msa0064490:CDS
ACCTCCAGTACAAGAGAGTT+TGG 0.413996 1_2:+25620158 Msa0064490:CDS
CTAGCAACAATTGGTTGAAA+AGG 0.417846 1_2:-25618546 None:intergenic
CTTTGTCTTATGGTTTGAAA+AGG 0.427226 1_2:-25620119 None:intergenic
GTTTGAAAAGGATACTTTGT+TGG 0.430284 1_2:-25620107 None:intergenic
AATAACTTACTAGCAACAAT+TGG 0.433902 1_2:-25618555 None:intergenic
GAGAAGAGGCAGATAAGATT+GGG 0.438099 1_2:+25618217 Msa0064490:five_prime_UTR
ATTCAAAGTCTTCATTATGA+AGG 0.438728 1_2:-25620484 None:intergenic
GTTTGATTTCTTTCCGGTGA+AGG 0.440508 1_2:-25620080 None:intergenic
TGAAGAGGGTTTGTGAGTAT+TGG 0.440755 1_2:-25618330 None:intergenic
AGAGGCAGATAAGATTGGGT+TGG 0.457480 1_2:+25618221 Msa0064490:five_prime_UTR
TCACCGGAAAGAAATCAAAC+AGG 0.457839 1_2:+25620083 Msa0064490:CDS
TTAAAGAAAATAATATTTGA+AGG 0.467368 1_2:+25618168 None:intergenic
AAATAATATTTGAAGGGTCG+TGG 0.469175 1_2:+25618175 Msa0064490:five_prime_UTR
TATGTCATGAATCTTACAAA+TGG 0.472969 1_2:+25620443 Msa0064490:three_prime_UTR
CCCACCAAACTCTCTTGTAC+TGG 0.486040 1_2:-25620162 None:intergenic
TGAAAAGGAGAAGCAACAAT+TGG 0.492986 1_2:-25618531 None:intergenic
TTTGATTTCTTTCCGGTGAA+GGG 0.493506 1_2:-25620079 None:intergenic
TTGAAAACCATAGAAAAGAA+TGG 0.506340 1_2:+25620229 Msa0064490:CDS
TTCAAAGTCTTCATTATGAA+GGG 0.513570 1_2:-25620483 None:intergenic
AGAGAGTTTGGTGGGAAGCT+GGG 0.527154 1_2:+25620170 Msa0064490:CDS
GAGAGAGTGTGTCCCTTCAC+CGG 0.545165 1_2:+25620067 Msa0064490:intron
GAAGAAGAAAGAACAATGGC+GGG 0.548186 1_2:+25618248 Msa0064490:exon
TAAAGAAAATAATATTTGAA+GGG 0.557238 1_2:+25618169 None:intergenic
GCGGGTTCTGCAGTATCACT+TGG 0.558417 1_2:+25618266 Msa0064490:CDS
AATAATATTTGAAGGGTCGT+GGG 0.560559 1_2:+25618176 Msa0064490:five_prime_UTR
TTACGGGGTGAGAATGAAGA+GGG 0.574781 1_2:-25618344 None:intergenic
CCAGTACAAGAGAGTTTGGT+GGG 0.583767 1_2:+25620162 Msa0064490:CDS
ACAGGAGTTGATTCTGACTA+CGG 0.589928 1_2:+25620397 Msa0064490:three_prime_UTR
ACCAAACTCTCTTGTACTGG+AGG 0.590235 1_2:-25620159 None:intergenic
TTCTTGAATTCTCAGTTAAG+CGG 0.591300 1_2:+25618468 Msa0064490:CDS
CAATAACATAATTTGAGAAG+AGG 0.598345 1_2:+25618203 Msa0064490:five_prime_UTR
TCAAAGTCTTCATTATGAAG+GGG 0.615498 1_2:-25620482 None:intergenic
AATATTTGAAGGGTCGTGGG+TGG 0.615951 1_2:+25618179 Msa0064490:five_prime_UTR
GTTACGGGGTGAGAATGAAG+AGG 0.616418 1_2:-25618345 None:intergenic
GGAGAAGCAACAATTGGTGA+GGG 0.617414 1_2:-25618525 None:intergenic
AGAAGAAGAAAGAACAATGG+CGG 0.618264 1_2:+25618247 Msa0064490:exon
AGGAGAAGCAACAATTGGTG+AGG 0.627644 1_2:-25618526 None:intergenic
AAAGCTTCGTTTGTCAACCA+AGG 0.633582 1_2:+25620204 Msa0064490:CDS
TCCAGTACAAGAGAGTTTGG+TGG 0.651100 1_2:+25620161 Msa0064490:CDS
CACCGGAAAGAAATCAAACA+GGG 0.654830 1_2:+25620084 Msa0064490:CDS
ATAAGAAGAAGAAAGAACAA+TGG 0.678608 1_2:+25618244 Msa0064490:exon
GCGCATAGAAGCGAAGACGA+AGG 0.687146 1_2:-25618294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAAATAAAAAAGAA+CGG - chr1_2:25618676-25618695 None:intergenic 10.0%
!!! ATTTATTGAAGTTATTTTAA+TGG + chr1_2:25619093-25619112 Msa0064490:intron 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_2:25620011-25620030 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_2:25620373-25620392 Msa0064490:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_2:25620374-25620393 Msa0064490:three_prime_UTR 10.0%
!! ACAATAAAAATAAAAAAGAA+CGG - chr1_2:25618676-25618695 None:intergenic 10.0%
!!! ATTTATTGAAGTTATTTTAA+TGG + chr1_2:25619093-25619112 Msa0064490:intron 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_2:25620011-25620030 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_2:25620373-25620392 Msa0064490:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_2:25620374-25620393 Msa0064490:three_prime_UTR 10.0%
!!! CATTTTTTTGAAATTATTAC+CGG - chr1_2:25618835-25618854 None:intergenic 15.0%
!!! TAGCTCTAATTTTAATAAAA+TGG + chr1_2:25618937-25618956 Msa0064490:intron 15.0%
!!! CTTTTATTTTCATAACAATA+GGG + chr1_2:25619273-25619292 Msa0064490:intron 15.0%
!!! AAAAAATAACATATTTCTGT+TGG + chr1_2:25619499-25619518 Msa0064490:intron 15.0%
!!! TATTTTTTCGTATTTTATTG+CGG + chr1_2:25619530-25619549 Msa0064490:intron 15.0%
!! CAAAAAAGAATTATTACTAT+AGG - chr1_2:25619636-25619655 None:intergenic 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_2:25619881-25619900 Msa0064490:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_2:25620012-25620031 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_2:25620021-25620040 Msa0064490:intron 15.0%
!!! CATTTTTTTGAAATTATTAC+CGG - chr1_2:25618835-25618854 None:intergenic 15.0%
!!! TAGCTCTAATTTTAATAAAA+TGG + chr1_2:25618937-25618956 Msa0064490:intron 15.0%
!!! CTTTTATTTTCATAACAATA+GGG + chr1_2:25619273-25619292 Msa0064490:intron 15.0%
!!! AAAAAATAACATATTTCTGT+TGG + chr1_2:25619499-25619518 Msa0064490:intron 15.0%
!!! TATTTTTTCGTATTTTATTG+CGG + chr1_2:25619530-25619549 Msa0064490:intron 15.0%
!! CAAAAAAGAATTATTACTAT+AGG - chr1_2:25619636-25619655 None:intergenic 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_2:25619881-25619900 Msa0064490:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_2:25620012-25620031 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_2:25620021-25620040 Msa0064490:intron 15.0%
!! TTAAGTTAGTTAGATAGTTA+CGG - chr1_2:25618364-25618383 None:intergenic 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_2:25618444-25618463 Msa0064490:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_2:25618445-25618464 Msa0064490:intron 20.0%
!! CGGTAATAATTTCAAAAAAA+TGG + chr1_2:25618833-25618852 Msa0064490:intron 20.0%
!! AAGGAATGTTACAATAATTA+AGG + chr1_2:25619248-25619267 Msa0064490:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_2:25619275-25619294 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_2:25619272-25619291 Msa0064490:intron 20.0%
!! AACATATGTTCTATACAAAT+AGG - chr1_2:25619762-25619781 None:intergenic 20.0%
!! TATTTGTATAGAACATATGT+TGG + chr1_2:25619761-25619780 Msa0064490:intron 20.0%
!! ATTTGTATAGAACATATGTT+GGG + chr1_2:25619762-25619781 Msa0064490:intron 20.0%
!! GTTTAACACTTATCATTTAA+GGG - chr1_2:25619798-25619817 None:intergenic 20.0%
!! TGTTTAACACTTATCATTTA+AGG - chr1_2:25619799-25619818 None:intergenic 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_2:25619885-25619904 None:intergenic 20.0%
!!! ACCAAATGTGTTTTTTTTTT+GGG - chr1_2:25619934-25619953 None:intergenic 20.0%
!!! AACCAAATGTGTTTTTTTTT+TGG - chr1_2:25619935-25619954 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_2:25620312-25620331 Msa0064490:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_2:25620344-25620363 None:intergenic 20.0%
!! TTAAGTTAGTTAGATAGTTA+CGG - chr1_2:25618364-25618383 None:intergenic 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_2:25618444-25618463 Msa0064490:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_2:25618445-25618464 Msa0064490:intron 20.0%
!! CGGTAATAATTTCAAAAAAA+TGG + chr1_2:25618833-25618852 Msa0064490:intron 20.0%
!! AAGGAATGTTACAATAATTA+AGG + chr1_2:25619248-25619267 Msa0064490:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_2:25619275-25619294 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_2:25619272-25619291 Msa0064490:intron 20.0%
!! AACATATGTTCTATACAAAT+AGG - chr1_2:25619762-25619781 None:intergenic 20.0%
!! TATTTGTATAGAACATATGT+TGG + chr1_2:25619761-25619780 Msa0064490:intron 20.0%
!! ATTTGTATAGAACATATGTT+GGG + chr1_2:25619762-25619781 Msa0064490:intron 20.0%
!! GTTTAACACTTATCATTTAA+GGG - chr1_2:25619798-25619817 None:intergenic 20.0%
!! TGTTTAACACTTATCATTTA+AGG - chr1_2:25619799-25619818 None:intergenic 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_2:25619885-25619904 None:intergenic 20.0%
!!! ACCAAATGTGTTTTTTTTTT+GGG - chr1_2:25619934-25619953 None:intergenic 20.0%
!!! AACCAAATGTGTTTTTTTTT+TGG - chr1_2:25619935-25619954 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_2:25620312-25620331 Msa0064490:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_2:25620344-25620363 None:intergenic 20.0%
! CAATAACATAATTTGAGAAG+AGG + chr1_2:25618203-25618222 Msa0064490:five_prime_UTR 25.0%
! ATAAGAAGAAGAAAGAACAA+TGG + chr1_2:25618244-25618263 Msa0064490:exon 25.0%
! TAAGTTAGTTAGATAGTTAC+GGG - chr1_2:25618363-25618382 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_2:25618558-25618577 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_2:25619152-25619171 None:intergenic 25.0%
! TAACACATCTACAAAAAACA+AGG - chr1_2:25619171-25619190 None:intergenic 25.0%
!! TTCAATCTGAAGTATATTAG+AGG + chr1_2:25619219-25619238 Msa0064490:intron 25.0%
!! ATTTTCATAACAATAGGGAT+AGG + chr1_2:25619278-25619297 Msa0064490:intron 25.0%
!! TGATTTTGTCAAGTTATTAG+TGG - chr1_2:25619377-25619396 None:intergenic 25.0%
! TGCTTAAGAAACTCAATTAT+AGG - chr1_2:25619707-25619726 None:intergenic 25.0%
! CTATTAGTTAGAGATATCAT+GGG + chr1_2:25619904-25619923 Msa0064490:intron 25.0%
! ACCCAAAAAAAAAACACATT+TGG + chr1_2:25619930-25619949 Msa0064490:intron 25.0%
! TTGAAAACCATAGAAAAGAA+TGG + chr1_2:25620229-25620248 Msa0064490:CDS 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_2:25620379-25620398 Msa0064490:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_2:25620443-25620462 Msa0064490:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_2:25620486-25620505 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_2:25620487-25620506 None:intergenic 25.0%
! CAATAACATAATTTGAGAAG+AGG + chr1_2:25618203-25618222 Msa0064490:five_prime_UTR 25.0%
! ATAAGAAGAAGAAAGAACAA+TGG + chr1_2:25618244-25618263 Msa0064490:exon 25.0%
! TAAGTTAGTTAGATAGTTAC+GGG - chr1_2:25618363-25618382 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_2:25618558-25618577 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_2:25619152-25619171 None:intergenic 25.0%
! TAACACATCTACAAAAAACA+AGG - chr1_2:25619171-25619190 None:intergenic 25.0%
!! TTCAATCTGAAGTATATTAG+AGG + chr1_2:25619219-25619238 Msa0064490:intron 25.0%
!! ATTTTCATAACAATAGGGAT+AGG + chr1_2:25619278-25619297 Msa0064490:intron 25.0%
!! TGATTTTGTCAAGTTATTAG+TGG - chr1_2:25619377-25619396 None:intergenic 25.0%
! TGCTTAAGAAACTCAATTAT+AGG - chr1_2:25619707-25619726 None:intergenic 25.0%
! CTATTAGTTAGAGATATCAT+GGG + chr1_2:25619904-25619923 Msa0064490:intron 25.0%
! ACCCAAAAAAAAAACACATT+TGG + chr1_2:25619930-25619949 Msa0064490:intron 25.0%
! TTGAAAACCATAGAAAAGAA+TGG + chr1_2:25620229-25620248 Msa0064490:CDS 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_2:25620379-25620398 Msa0064490:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_2:25620443-25620462 Msa0064490:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_2:25620486-25620505 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_2:25620487-25620506 None:intergenic 25.0%
AAATAATATTTGAAGGGTCG+TGG + chr1_2:25618175-25618194 Msa0064490:five_prime_UTR 30.0%
AATAATATTTGAAGGGTCGT+GGG + chr1_2:25618176-25618195 Msa0064490:five_prime_UTR 30.0%
AAGTTAGTTAGATAGTTACG+GGG - chr1_2:25618362-25618381 None:intergenic 30.0%
TTCTTGAATTCTCAGTTAAG+CGG + chr1_2:25618468-25618487 Msa0064490:CDS 30.0%
! TCAGAGTGAATATCGATTAT+TGG - chr1_2:25618585-25618604 None:intergenic 30.0%
AAATGTTATTGATGTTGTGC+CGG + chr1_2:25618864-25618883 Msa0064490:intron 30.0%
! TCTGAAGTATATTAGAGGAT+AGG + chr1_2:25619224-25619243 Msa0064490:intron 30.0%
AGTATATTAGAGGATAGGAA+AGG + chr1_2:25619229-25619248 Msa0064490:intron 30.0%
ACTATAGGCAAACATAAACT+AGG - chr1_2:25619621-25619640 None:intergenic 30.0%
ATAAGAGAACATGCATAACA+TGG + chr1_2:25619667-25619686 Msa0064490:intron 30.0%
TAAGTGTTAAACATGCTGTT+AGG + chr1_2:25619806-25619825 Msa0064490:intron 30.0%
AAGTGTTAAACATGCTGTTA+GGG + chr1_2:25619807-25619826 Msa0064490:intron 30.0%
!!! ATAAGACCTGTTTTTACTGA+AGG + chr1_2:25619837-25619856 Msa0064490:intron 30.0%
ATATGTCCTTCAGTAAAAAC+AGG - chr1_2:25619846-25619865 None:intergenic 30.0%
GCTATTAGTTAGAGATATCA+TGG + chr1_2:25619903-25619922 Msa0064490:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_2:25619972-25619991 None:intergenic 30.0%
AACTACATCATTAGTGTCTA+AGG + chr1_2:25619972-25619991 Msa0064490:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_2:25620031-25620050 Msa0064490:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_2:25620110-25620129 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_2:25620122-25620141 None:intergenic 30.0%
ACTGCAATTTCTTTGTCTTA+TGG - chr1_2:25620132-25620151 None:intergenic 30.0%
! ATCAAGTCCATTCTTTTCTA+TGG - chr1_2:25620239-25620258 None:intergenic 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_2:25620485-25620504 None:intergenic 30.0%
AAATAATATTTGAAGGGTCG+TGG + chr1_2:25618175-25618194 Msa0064490:five_prime_UTR 30.0%
AATAATATTTGAAGGGTCGT+GGG + chr1_2:25618176-25618195 Msa0064490:five_prime_UTR 30.0%
AAGTTAGTTAGATAGTTACG+GGG - chr1_2:25618362-25618381 None:intergenic 30.0%
TTCTTGAATTCTCAGTTAAG+CGG + chr1_2:25618468-25618487 Msa0064490:CDS 30.0%
! TCAGAGTGAATATCGATTAT+TGG - chr1_2:25618585-25618604 None:intergenic 30.0%
AAATGTTATTGATGTTGTGC+CGG + chr1_2:25618864-25618883 Msa0064490:intron 30.0%
! TCTGAAGTATATTAGAGGAT+AGG + chr1_2:25619224-25619243 Msa0064490:intron 30.0%
AGTATATTAGAGGATAGGAA+AGG + chr1_2:25619229-25619248 Msa0064490:intron 30.0%
ACTATAGGCAAACATAAACT+AGG - chr1_2:25619621-25619640 None:intergenic 30.0%
ATAAGAGAACATGCATAACA+TGG + chr1_2:25619667-25619686 Msa0064490:intron 30.0%
TAAGTGTTAAACATGCTGTT+AGG + chr1_2:25619806-25619825 Msa0064490:intron 30.0%
AAGTGTTAAACATGCTGTTA+GGG + chr1_2:25619807-25619826 Msa0064490:intron 30.0%
!!! ATAAGACCTGTTTTTACTGA+AGG + chr1_2:25619837-25619856 Msa0064490:intron 30.0%
ATATGTCCTTCAGTAAAAAC+AGG - chr1_2:25619846-25619865 None:intergenic 30.0%
GCTATTAGTTAGAGATATCA+TGG + chr1_2:25619903-25619922 Msa0064490:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_2:25619972-25619991 None:intergenic 30.0%
AACTACATCATTAGTGTCTA+AGG + chr1_2:25619972-25619991 Msa0064490:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_2:25620031-25620050 Msa0064490:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_2:25620110-25620129 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_2:25620122-25620141 None:intergenic 30.0%
ACTGCAATTTCTTTGTCTTA+TGG - chr1_2:25620132-25620151 None:intergenic 30.0%
! ATCAAGTCCATTCTTTTCTA+TGG - chr1_2:25620239-25620258 None:intergenic 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_2:25620485-25620504 None:intergenic 30.0%
AGAAGAAGAAAGAACAATGG+CGG + chr1_2:25618247-25618266 Msa0064490:exon 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_2:25618534-25618553 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_2:25618549-25618568 None:intergenic 35.0%
GTATATCGCAATCAGATTAG+AGG - chr1_2:25618720-25618739 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_2:25618813-25618832 Msa0064490:intron 35.0%
CATAACAATAGGGATAGGAA+AGG + chr1_2:25619283-25619302 Msa0064490:intron 35.0%
TGTCAAGTTATTAGTGGTGT+CGG - chr1_2:25619371-25619390 None:intergenic 35.0%
CCATAGTAAGCTATTAAGCA+CGG - chr1_2:25619458-25619477 None:intergenic 35.0%
AGGCAAACATAAACTAGGAA+GGG - chr1_2:25619616-25619635 None:intergenic 35.0%
TAGGCAAACATAAACTAGGA+AGG - chr1_2:25619617-25619636 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_2:25620082-25620101 None:intergenic 35.0%
! TTCTATGGTTTTCAATGCCT+TGG - chr1_2:25620224-25620243 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_2:25620252-25620271 Msa0064490:CDS 35.0%
AGAAGAAGAAAGAACAATGG+CGG + chr1_2:25618247-25618266 Msa0064490:exon 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_2:25618534-25618553 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_2:25618549-25618568 None:intergenic 35.0%
GTATATCGCAATCAGATTAG+AGG - chr1_2:25618720-25618739 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_2:25618813-25618832 Msa0064490:intron 35.0%
CATAACAATAGGGATAGGAA+AGG + chr1_2:25619283-25619302 Msa0064490:intron 35.0%
TGTCAAGTTATTAGTGGTGT+CGG - chr1_2:25619371-25619390 None:intergenic 35.0%
CCATAGTAAGCTATTAAGCA+CGG - chr1_2:25619458-25619477 None:intergenic 35.0%
AGGCAAACATAAACTAGGAA+GGG - chr1_2:25619616-25619635 None:intergenic 35.0%
TAGGCAAACATAAACTAGGA+AGG - chr1_2:25619617-25619636 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_2:25620082-25620101 None:intergenic 35.0%
! TTCTATGGTTTTCAATGCCT+TGG - chr1_2:25620224-25620243 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_2:25620252-25620271 Msa0064490:CDS 35.0%
TGAGAAGAGGCAGATAAGAT+TGG + chr1_2:25618216-25618235 Msa0064490:five_prime_UTR 40.0%
GAGAAGAGGCAGATAAGATT+GGG + chr1_2:25618217-25618236 Msa0064490:five_prime_UTR 40.0%
GAAGAAGAAAGAACAATGGC+GGG + chr1_2:25618248-25618267 Msa0064490:exon 40.0%
TGAAGAGGGTTTGTGAGTAT+TGG - chr1_2:25618333-25618352 None:intergenic 40.0%
! CTGTTGCTAGTTTACGTACA+TGG + chr1_2:25618786-25618805 Msa0064490:intron 40.0%
CTGATACGTGTTAGAGACAA+CGG + chr1_2:25618999-25619018 Msa0064490:intron 40.0%
TGATACGTGTTAGAGACAAC+GGG + chr1_2:25619000-25619019 Msa0064490:intron 40.0%
ATGCTTCACTATTCACGTAC+AGG - chr1_2:25619317-25619336 None:intergenic 40.0%
TGTACGTGAATAGTGAAGCA+TGG + chr1_2:25619316-25619335 Msa0064490:intron 40.0%
CAATTATATGTGTCCGACAC+CGG + chr1_2:25619409-25619428 Msa0064490:intron 40.0%
AATTATATGTGTCCGACACC+GGG + chr1_2:25619410-25619429 Msa0064490:intron 40.0%
CCGTGCTTAATAGCTTACTA+TGG + chr1_2:25619455-25619474 Msa0064490:intron 40.0%
! TCGTATTTTATTGCGGACAG+AGG + chr1_2:25619537-25619556 Msa0064490:intron 40.0%
AGAACATGCATAACATGGTG+TGG + chr1_2:25619672-25619691 Msa0064490:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_2:25620083-25620102 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_2:25620083-25620102 Msa0064490:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_2:25620084-25620103 Msa0064490:CDS 40.0%
AAAGCTTCGTTTGTCAACCA+AGG + chr1_2:25620204-25620223 Msa0064490:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_2:25620397-25620416 Msa0064490:three_prime_UTR 40.0%
TGAGAAGAGGCAGATAAGAT+TGG + chr1_2:25618216-25618235 Msa0064490:five_prime_UTR 40.0%
GAGAAGAGGCAGATAAGATT+GGG + chr1_2:25618217-25618236 Msa0064490:five_prime_UTR 40.0%
GAAGAAGAAAGAACAATGGC+GGG + chr1_2:25618248-25618267 Msa0064490:exon 40.0%
TGAAGAGGGTTTGTGAGTAT+TGG - chr1_2:25618333-25618352 None:intergenic 40.0%
! CTGTTGCTAGTTTACGTACA+TGG + chr1_2:25618786-25618805 Msa0064490:intron 40.0%
CTGATACGTGTTAGAGACAA+CGG + chr1_2:25618999-25619018 Msa0064490:intron 40.0%
TGATACGTGTTAGAGACAAC+GGG + chr1_2:25619000-25619019 Msa0064490:intron 40.0%
ATGCTTCACTATTCACGTAC+AGG - chr1_2:25619317-25619336 None:intergenic 40.0%
TGTACGTGAATAGTGAAGCA+TGG + chr1_2:25619316-25619335 Msa0064490:intron 40.0%
CAATTATATGTGTCCGACAC+CGG + chr1_2:25619409-25619428 Msa0064490:intron 40.0%
AATTATATGTGTCCGACACC+GGG + chr1_2:25619410-25619429 Msa0064490:intron 40.0%
CCGTGCTTAATAGCTTACTA+TGG + chr1_2:25619455-25619474 Msa0064490:intron 40.0%
! TCGTATTTTATTGCGGACAG+AGG + chr1_2:25619537-25619556 Msa0064490:intron 40.0%
AGAACATGCATAACATGGTG+TGG + chr1_2:25619672-25619691 Msa0064490:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_2:25620083-25620102 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_2:25620083-25620102 Msa0064490:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_2:25620084-25620103 Msa0064490:CDS 40.0%
AAAGCTTCGTTTGTCAACCA+AGG + chr1_2:25620204-25620223 Msa0064490:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_2:25620397-25620416 Msa0064490:three_prime_UTR 40.0%
AATATTTGAAGGGTCGTGGG+TGG + chr1_2:25618179-25618198 Msa0064490:five_prime_UTR 45.0%
AGAGGCAGATAAGATTGGGT+TGG + chr1_2:25618221-25618240 Msa0064490:five_prime_UTR 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_2:25618347-25618366 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_2:25618528-25618547 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_2:25618529-25618548 None:intergenic 45.0%
CACAAGTCAGTGTCAAACAC+CGG - chr1_2:25618886-25618905 None:intergenic 45.0%
GAATAGTGAAGCATGGACAC+CGG + chr1_2:25619323-25619342 Msa0064490:intron 45.0%
TATTAAGCACGGACACTCCT+AGG - chr1_2:25619447-25619466 None:intergenic 45.0%
GTCACTCAAACGATGAAAGC+TGG - chr1_2:25619584-25619603 None:intergenic 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_2:25620089-25620108 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_2:25620158-25620177 Msa0064490:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_2:25620162-25620181 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_2:25620161-25620180 Msa0064490:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_2:25620162-25620181 Msa0064490:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_2:25620256-25620275 Msa0064490:CDS 45.0%
AATATTTGAAGGGTCGTGGG+TGG + chr1_2:25618179-25618198 Msa0064490:five_prime_UTR 45.0%
AGAGGCAGATAAGATTGGGT+TGG + chr1_2:25618221-25618240 Msa0064490:five_prime_UTR 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_2:25618347-25618366 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_2:25618528-25618547 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_2:25618529-25618548 None:intergenic 45.0%
CACAAGTCAGTGTCAAACAC+CGG - chr1_2:25618886-25618905 None:intergenic 45.0%
GAATAGTGAAGCATGGACAC+CGG + chr1_2:25619323-25619342 Msa0064490:intron 45.0%
TATTAAGCACGGACACTCCT+AGG - chr1_2:25619447-25619466 None:intergenic 45.0%
GTCACTCAAACGATGAAAGC+TGG - chr1_2:25619584-25619603 None:intergenic 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_2:25620089-25620108 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_2:25620158-25620177 Msa0064490:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_2:25620162-25620181 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_2:25620161-25620180 Msa0064490:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_2:25620162-25620181 Msa0064490:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_2:25620256-25620275 Msa0064490:CDS 45.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_2:25618348-25618367 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_2:25620165-25620184 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_2:25620169-25620188 Msa0064490:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_2:25620170-25620189 Msa0064490:CDS 50.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_2:25618348-25618367 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_2:25620165-25620184 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_2:25620169-25620188 Msa0064490:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_2:25620170-25620189 Msa0064490:CDS 50.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_2:25618266-25618285 Msa0064490:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_2:25618297-25618316 None:intergenic 55.0%
GTTAGTGTCCGTGTCGTGTC+CGG - chr1_2:25619345-25619364 None:intergenic 55.0%
TCCTAGGATTAGGCGTGTCC+CGG - chr1_2:25619431-25619450 None:intergenic 55.0%
GCACGGACACTCCTAGGATT+AGG - chr1_2:25619441-25619460 None:intergenic 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_2:25620067-25620086 Msa0064490:intron 55.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_2:25618266-25618285 Msa0064490:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_2:25618297-25618316 None:intergenic 55.0%
GTTAGTGTCCGTGTCGTGTC+CGG - chr1_2:25619345-25619364 None:intergenic 55.0%
TCCTAGGATTAGGCGTGTCC+CGG - chr1_2:25619431-25619450 None:intergenic 55.0%
GCACGGACACTCCTAGGATT+AGG - chr1_2:25619441-25619460 None:intergenic 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_2:25620067-25620086 Msa0064490:intron 55.0%
CATGGACACCGGACACGACA+CGG + chr1_2:25619334-25619353 Msa0064490:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - chr1_2:25619425-25619444 None:intergenic 60.0%
ACCGGGACACGCCTAATCCT+AGG + chr1_2:25619427-25619446 Msa0064490:intron 60.0%
CATGGACACCGGACACGACA+CGG + chr1_2:25619334-25619353 Msa0064490:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - chr1_2:25619425-25619444 None:intergenic 60.0%
ACCGGGACACGCCTAATCCT+AGG + chr1_2:25619427-25619446 Msa0064490:intron 60.0%
GCTTTGACGCGCAGGCTGTG+TGG + chr1_2:25618754-25618773 Msa0064490:intron 65.0%
GCTTTGACGCGCAGGCTGTG+TGG + chr1_2:25618754-25618773 Msa0064490:intron 65.0%
CGCGCAGGCTGTGTGGAGCA+CGG + chr1_2:25618761-25618780 Msa0064490:intron 70.0%
GCGCAGGCTGTGTGGAGCAC+GGG + chr1_2:25618762-25618781 Msa0064490:intron 70.0%
CGCGCAGGCTGTGTGGAGCA+CGG + chr1_2:25618761-25618780 Msa0064490:intron 70.0%
GCGCAGGCTGTGTGGAGCAC+GGG + chr1_2:25618762-25618781 Msa0064490:intron 70.0%
CTGCGCGCGCTTTGACGCGC+AGG + chr1_2:25618746-25618765 Msa0064490:intron 75.0%
CTGCGCGCGCTTTGACGCGC+AGG + chr1_2:25618746-25618765 Msa0064490:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25618171 25620544 25618171 ID=Msa0064490;Name=Msa0064490
chr1_2 mRNA 25618171 25620544 25618171 ID=Msa0064490-mRNA-1;Parent=Msa0064490;Name=Msa0064490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=92|1|1|1|1|1|3|244|146
chr1_2 exon 25618171 25618362 25618171 ID=Msa0064490-mRNA-1:exon:9132;Parent=Msa0064490-mRNA-1
chr1_2 exon 25618460 25618567 25618460 ID=Msa0064490-mRNA-1:exon:9133;Parent=Msa0064490-mRNA-1
chr1_2 exon 25620068 25620544 25620068 ID=Msa0064490-mRNA-1:exon:9134;Parent=Msa0064490-mRNA-1
chr1_2 five_prime_UTR 25618171 25618262 25618171 ID=Msa0064490-mRNA-1:five_prime_utr;Parent=Msa0064490-mRNA-1
chr1_2 CDS 25618263 25618362 25618263 ID=Msa0064490-mRNA-1:cds;Parent=Msa0064490-mRNA-1
chr1_2 CDS 25618460 25618567 25618460 ID=Msa0064490-mRNA-1:cds;Parent=Msa0064490-mRNA-1
chr1_2 CDS 25620068 25620300 25620068 ID=Msa0064490-mRNA-1:cds;Parent=Msa0064490-mRNA-1
chr1_2 three_prime_UTR 25620301 25620544 25620301 ID=Msa0064490-mRNA-1:three_prime_utr;Parent=Msa0064490-mRNA-1
Gene Sequence

>Msa0064490

ATGGCGGGTTCTGCAGTATCACTTGGAAACACCTTCGTCTTCGCTTCTATGCGCACAATCTCATCAACCAATACTCACAAACCCTCTTCATTCTCACCCCAATTAGGGTTCTTGAATTCTCAGTTAAGCGGTCTCAAAATCTCGTCTCAGACTTCGATTAAATTGCCCTCACCAATTGTTGCTTCTCCTTTTCAACCAATTGTTGCTAAGAGAGTGTGTCCCTTCACCGGAAAGAAATCAAACAGGGCCAACAAAGTATCCTTTTCAAACCATAAGACAAAGAAATTGCAGTTTGTAAACCTCCAGTACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGTTATGTAAAGCTTCGTTTGTCAACCAAGGCATTGAAAACCATAGAAAAGAATGGACTTGATGCAGTTGCAAAAAAGGCTGGAATTGATCTCACTAAGAAATGA

Protein sequence

>Msa0064490

MAGSAVSLGNTFVFASMRTISSTNTHKPSSFSPQLGFLNSQLSGLKISSQTSIKLPSPIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLTKK*