AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259570 MtrunA17_Chr2g0333871 97.241 290 7 1 1 289 1 290 0.0 566
Msa0259570 MtrunA17_Chr4g0001421 76.109 293 66 2 1 289 1 293 2.87e-157 440
Msa0259570 MtrunA17_Chr1g0210741 62.264 212 80 0 78 289 69 280 1.33e-97 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259570 AT1G16880.1 71.053 266 71 3 29 289 26 290 2.66e-133 379
Msa0259570 AT5G04740.1 62.736 212 79 0 78 289 90 301 3.03e-99 293
Msa0259570 AT1G16880.2 65.476 168 52 3 29 191 26 192 4.19e-69 213
Msa0259570 AT5G04740.2 59.664 119 48 0 171 289 82 200 2.04e-48 160
Msa0259570 AT3G01990.3 24.348 230 142 4 54 276 1 205 3.43e-13 69.3
Msa0259570 AT3G01990.2 24.348 230 142 4 54 276 1 205 4.08e-13 68.9
Msa0259570 AT3G01990.4 24.348 230 142 4 54 276 1 205 4.12e-13 69.3
Msa0259570 AT3G01990.7 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0259570 AT3G01990.5 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0259570 AT3G01990.6 24.348 230 142 4 54 276 1 205 5.50e-13 69.3
Msa0259570 AT3G01990.8 25.373 201 118 4 83 276 16 191 7.82e-13 68.2
Msa0259570 AT3G01990.9 25.373 201 118 4 83 276 16 191 1.10e-12 67.8
Msa0259570 AT3G01990.11 25.373 201 118 4 83 276 16 191 1.20e-12 68.2
Msa0259570 AT3G01990.10 25.373 201 118 4 83 276 16 191 1.22e-12 68.2
Msa0259570 AT3G01990.1 25.373 201 118 4 83 276 16 191 1.22e-12 68.2

Find 83 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGATCGGCCTGGATTAT+TGG 0.254008 2_2:+56612608 Msa0259570:CDS
CACAATATTGGCAATGCATT+TGG 0.274897 2_2:+56613209 Msa0259570:three_prime_UTR
TTGTAAAATGTAGGGGCTTT+TGG 0.296400 2_2:+56612815 Msa0259570:intron
AAGCTGCTCCTAGAGCTAAT+TGG 0.307671 2_2:-56612315 None:intergenic
TTAGCTCTAGGAGCAGCTTT+TGG 0.320063 2_2:+56612319 Msa0259570:CDS
GAATTCATCACCTGCTCCTT+TGG 0.338089 2_2:-56612352 None:intergenic
GCTATGGCTGCTTGCAGTCT+TGG 0.340320 2_2:+56610679 Msa0259570:CDS
TAATAACTTCTTCAGACCTT+TGG 0.343676 2_2:+56610720 Msa0259570:CDS
GAATATAATAACCACAATAT+TGG 0.357966 2_2:+56613197 Msa0259570:three_prime_UTR
AAGAGTTGAAGGATTTGAAA+AGG 0.370883 2_2:-56610641 None:intergenic
ATTAACATTGCTGTTGAATC+TGG 0.377217 2_2:+56612657 Msa0259570:CDS
TGACTAGTAAGTTTACAATA+TGG 0.378063 2_2:-56613317 None:intergenic
AACTTTGATTGCAGTGATAC+AGG 0.390474 2_2:+56612111 Msa0259570:intron
CTTGGGACTGAATGTTGTTA+AGG 0.403190 2_2:+56611942 Msa0259570:CDS
TACCTGCTGGAGAGGCTTGA+TGG 0.411055 2_2:-56612877 None:intergenic
AGTGGAATGTACTCCAGCTT+TGG 0.411870 2_2:-56613257 None:intergenic
AGCTGCTCCTAGAGCTAATT+GGG 0.415623 2_2:-56612314 None:intergenic
ACTCAATCAACAAATACAAT+TGG 0.416063 2_2:+56613277 Msa0259570:three_prime_UTR
TCTTGATCAATTATAACTAT+AGG 0.425614 2_2:-56611520 None:intergenic
TGTTAAGGCAAGCGTGTGTC+TGG 0.436304 2_2:+56611957 Msa0259570:CDS
GTGCTGCAGTTTGCTGTATG+TGG 0.438056 2_2:+56612581 Msa0259570:intron
GTGGAATGTACTCCAGCTTT+GGG 0.438611 2_2:-56613256 None:intergenic
AGCGTGTGTCTGGACTCTTC+TGG 0.440301 2_2:+56611967 Msa0259570:CDS
CAAGATGGAGGCACTGCAAA+TGG 0.440972 2_2:-56610749 None:intergenic
AAACTGGATTCCTCAGTTGT+AGG 0.450441 2_2:-56613128 None:intergenic
TCAATTATAACTATAGGTGT+TGG 0.463115 2_2:-56611514 None:intergenic
GGAAGATCCAGAGTTGTTAG+AGG 0.470609 2_2:+56612143 Msa0259570:CDS
TTCATCACCTGCTCCTTTGG+AGG 0.471072 2_2:-56612349 None:intergenic
ATCTCGACGACAGTTGCATC+AGG 0.471096 2_2:-56611550 None:intergenic
TGGATAGGAGCAGATAAAAC+TGG 0.481054 2_2:-56610376 None:intergenic
CCATCCTTGTTATGTTGGAT+AGG 0.484435 2_2:-56610391 None:intergenic
ACTGTCGTCGAGATTACCTT+TGG 0.487221 2_2:+56611559 Msa0259570:CDS
CAATTATAACTATAGGTGTT+GGG 0.488838 2_2:-56611513 None:intergenic
ATTACCTTTGGTGATCGCCT+TGG 0.489910 2_2:+56611571 Msa0259570:CDS
CTTCTTGCTTTGCACTTCCA+CGG 0.496175 2_2:+56613344 Msa0259570:three_prime_UTR
CATCATCGGTGATTGTTAAG+TGG 0.498493 2_2:-56612457 None:intergenic
TGTTATTTAAAATTGTCAAA+CGG 0.499007 2_2:-56612170 None:intergenic
GAATATTGTTAGCCCAAAGC+TGG 0.501276 2_2:+56613244 Msa0259570:three_prime_UTR
CGGATTGCCTCTAACAACTC+TGG 0.505539 2_2:-56612150 None:intergenic
CCATACCATCCTTGTTATGT+TGG 0.506105 2_2:-56610396 None:intergenic
CACCATCAAGCCTCTCCAGC+AGG 0.507273 2_2:+56612875 Msa0259570:CDS
AAAGATCACCACCTTCTGTC+AGG 0.509139 2_2:-56612482 None:intergenic
GTGGAGACAGCTGATCGGCC+TGG 0.511021 2_2:+56612600 Msa0259570:CDS
CATAGAAGTGGTCTTCAAGA+TGG 0.513424 2_2:-56610764 None:intergenic
AATATTGGCAATGCATTTGG+AGG 0.514705 2_2:+56613212 Msa0259570:three_prime_UTR
CACTTAACAATCACCGATGA+TGG 0.515391 2_2:+56612458 Msa0259570:CDS
CCAACATAACAAGGATGGTA+TGG 0.517017 2_2:+56610396 Msa0259570:five_prime_UTR
AATTGTATTTGTTGATTGAG+TGG 0.528191 2_2:-56613275 None:intergenic
CATATCATCAAGATTAGAAG+TGG 0.537255 2_2:+56610486 Msa0259570:five_prime_UTR
ACAAGATCAACCAATAATCC+AGG 0.541856 2_2:-56612618 None:intergenic
TAGTGCTTACGCCTTTGTGA+TGG 0.543958 2_2:-56612007 None:intergenic
ATCATCGGTGATTGTTAAGT+GGG 0.544912 2_2:-56612456 None:intergenic
GGAGAACAGGATGGAAATCA+AGG 0.557287 2_2:+56611475 Msa0259570:intron
CAGTGATACAGGTAGAAAAG+TGG 0.558460 2_2:+56612122 Msa0259570:intron
AGATAGCATGGAGATATATG+AGG 0.559451 2_2:-56610574 None:intergenic
CAAATGCATTGCCAATATTG+TGG 0.560302 2_2:-56613208 None:intergenic
TCAAGTGCCCAATTAGCTCT+AGG 0.563523 2_2:+56612307 Msa0259570:CDS
ACTTATGCCTCCAAAGGAGC+AGG 0.565012 2_2:+56612342 Msa0259570:CDS
AAGTTTCATGTCAGCTACAA+TGG 0.567439 2_2:+56612846 Msa0259570:CDS
AAAGAATAATAAAGTGAGGA+GGG 0.572709 2_2:+56610352 None:intergenic
CAACCAATTACCTGCTGGAG+AGG 0.574118 2_2:-56612885 None:intergenic
AGCACCAAGGCGATCACCAA+AGG 0.576324 2_2:-56611575 None:intergenic
AAAAGAATAATAAAGTGAGG+AGG 0.576639 2_2:+56610351 None:intergenic
CCGATGATGGTCCTGACAGA+AGG 0.584356 2_2:+56612471 Msa0259570:CDS
ACATGGCTTAGCAGATAGCA+TGG 0.585602 2_2:-56610586 None:intergenic
CCTATCCAACATAACAAGGA+TGG 0.592199 2_2:+56610391 Msa0259570:five_prime_UTR
ACTAGTATCATACATAGAAG+TGG 0.592687 2_2:-56610776 None:intergenic
CAGAAACAGCTGTTGCTCGA+GGG 0.594027 2_2:-56611359 None:intergenic
CCTTCTGTCAGGACCATCAT+CGG 0.595720 2_2:-56612471 None:intergenic
ATACCAATTTCAGCTTGATG+TGG 0.598739 2_2:+56612424 Msa0259570:intron
AATAAAAGAATAATAAAGTG+AGG 0.599286 2_2:+56610348 None:intergenic
TGCTCCTATCCAACATAACA+AGG 0.599487 2_2:+56610387 Msa0259570:five_prime_UTR
ATAAAATATGAATAAAGCCG+TGG 0.603487 2_2:-56613361 None:intergenic
TCAGAAACAGCTGTTGCTCG+AGG 0.604318 2_2:-56611360 None:intergenic
CTGCTGGAGAGGCTTGATGG+TGG 0.611190 2_2:-56612874 None:intergenic
TCGAGCAACAGCTGTTTCTG+AGG 0.612198 2_2:+56611362 Msa0259570:CDS
CTTGACTCGTCCTACAACTG+AGG 0.628347 2_2:+56613118 Msa0259570:CDS
GTTCAATGAGACAGAAGACA+TGG 0.645717 2_2:-56610603 None:intergenic
AGAAGTGGTCTTCAAGATGG+AGG 0.666392 2_2:-56610761 None:intergenic
TAACATGATCACATATCACC+CGG 0.672020 2_2:+56612188 Msa0259570:CDS
TGTATGTGGAGACAGCTGAT+CGG 0.701675 2_2:+56612595 Msa0259570:CDS
CGGTGTCAAGAAGAGCACCA+AGG 0.710369 2_2:-56611588 None:intergenic
ATCTGGTGAATTTGACACTG+AGG 0.742158 2_2:+56612674 Msa0259570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATATATATTCAACT+TGG + chr2_2:56611238-56611257 Msa0259570:intron 15.0%
!! GATTAATATATATTCAACTT+GGG + chr2_2:56611239-56611258 Msa0259570:intron 15.0%
!! ATAAACTTAAATCAAGAAAA+TGG + chr2_2:56611884-56611903 Msa0259570:intron 15.0%
!!! TGTTATTTAAAATTGTCAAA+CGG - chr2_2:56612173-56612192 None:intergenic 15.0%
!! ATACAATTAATTGTTACATT+TGG - chr2_2:56612731-56612750 None:intergenic 15.0%
!!! TTAATTTGTTGTAAAATGTA+GGG + chr2_2:56612807-56612826 Msa0259570:intron 15.0%
!! TTATTTAGACATACAAAAGT+CGG + chr2_2:56611015-56611034 Msa0259570:intron 20.0%
!! TTAGAAACTATTGTTGATAT+CGG + chr2_2:56611119-56611138 Msa0259570:intron 20.0%
!!! TTAGGTATATACTTGTTAAT+TGG + chr2_2:56611167-56611186 Msa0259570:intron 20.0%
!!! TAGGTATATACTTGTTAATT+GGG + chr2_2:56611168-56611187 Msa0259570:intron 20.0%
!! TACATACAATTAACACAAAA+TGG - chr2_2:56611300-56611319 None:intergenic 20.0%
!! TCTTGATCAATTATAACTAT+AGG - chr2_2:56611523-56611542 None:intergenic 20.0%
!!! AGAATCTGAAGTAATTTATT+TGG + chr2_2:56612076-56612095 Msa0259570:intron 20.0%
!!! CTTAATTTGTTGTAAAATGT+AGG + chr2_2:56612806-56612825 Msa0259570:intron 20.0%
!!! TAATTTGTTGTAAAATGTAG+GGG + chr2_2:56612808-56612827 Msa0259570:intron 20.0%
!!! TGTTAATTTGTTGAATGAAT+TGG + chr2_2:56612920-56612939 Msa0259570:intron 20.0%
!! TATAGAAGACTTAGTTTATT+AGG + chr2_2:56612957-56612976 Msa0259570:intron 20.0%
!! TGATAACAACATGTAAATTA+AGG - chr2_2:56613001-56613020 None:intergenic 20.0%
!!! AAATGAAACTTGATTAGTTT+CGG + chr2_2:56613023-56613042 Msa0259570:intron 20.0%
!! GAATATAATAACCACAATAT+TGG + chr2_2:56613197-56613216 Msa0259570:three_prime_UTR 20.0%
!! AAAAACTAGGTAAGTACTTT+TGG + chr2_2:56610819-56610838 Msa0259570:intron 25.0%
!! TTACTATTCAGTCTTTTTGT+TGG + chr2_2:56610968-56610987 Msa0259570:intron 25.0%
! TGGACTATATTTAGATATAG+AGG + chr2_2:56610988-56611007 Msa0259570:intron 25.0%
! AACACGTATAAAATACAACT+AGG + chr2_2:56611045-56611064 Msa0259570:intron 25.0%
! TACCTAACATAAATGTTTCT+CGG - chr2_2:56611154-56611173 None:intergenic 25.0%
! AAGATGATAATCTGAGAAAA+TGG - chr2_2:56611323-56611342 None:intergenic 25.0%
! CAATTATAACTATAGGTGTT+GGG - chr2_2:56611516-56611535 None:intergenic 25.0%
! TCAATTATAACTATAGGTGT+TGG - chr2_2:56611517-56611536 None:intergenic 25.0%
! ATTTCTCTCAACAAATCAAT+TGG + chr2_2:56611616-56611635 Msa0259570:intron 25.0%
! ACAGTGATGTATAAAAAAGA+TGG - chr2_2:56611646-56611665 None:intergenic 25.0%
! ATGAATGCATTGAAAAACTT+GGG + chr2_2:56611925-56611944 Msa0259570:CDS 25.0%
!! TATTGTACATGTTCGTTTTA+TGG + chr2_2:56612038-56612057 Msa0259570:intron 25.0%
!!! TGTTTTCAAACTGGTTTTAA+AGG + chr2_2:56612282-56612301 Msa0259570:intron 25.0%
!!! CAACACATTTTATTTGCTTT+GGG + chr2_2:56613175-56613194 Msa0259570:three_prime_UTR 25.0%
!! AATTGTATTTGTTGATTGAG+TGG - chr2_2:56613278-56613297 None:intergenic 25.0%
! ACTCAATCAACAAATACAAT+TGG + chr2_2:56613277-56613296 Msa0259570:three_prime_UTR 25.0%
! TGACTAGTAAGTTTACAATA+TGG - chr2_2:56613320-56613339 None:intergenic 25.0%
! ATAAAATATGAATAAAGCCG+TGG - chr2_2:56613364-56613383 None:intergenic 25.0%
TAATTAAAAAGTGACGCGTT+TGG - chr2_2:56610454-56610473 None:intergenic 30.0%
CATATCATCAAGATTAGAAG+TGG + chr2_2:56610486-56610505 Msa0259570:five_prime_UTR 30.0%
AAGAGTTGAAGGATTTGAAA+AGG - chr2_2:56610644-56610663 None:intergenic 30.0%
! TCCTTCAACTCTTTGAAAAA+TGG + chr2_2:56610651-56610670 Msa0259570:exon 30.0%
TAATAACTTCTTCAGACCTT+TGG + chr2_2:56610720-56610739 Msa0259570:CDS 30.0%
ACTAGTATCATACATAGAAG+TGG - chr2_2:56610779-56610798 None:intergenic 30.0%
CTTTCAGTCTTCAAAAAACT+AGG + chr2_2:56610806-56610825 Msa0259570:CDS 30.0%
TAAGTAATGTGTCTATCACT+TGG + chr2_2:56610901-56610920 Msa0259570:intron 30.0%
TTTGTTGAGAGAAATGCTTA+CGG - chr2_2:56611611-56611630 None:intergenic 30.0%
!! TAAGCATTGAATTGAAGTGT+CGG - chr2_2:56611675-56611694 None:intergenic 30.0%
!! TTTAAAAAAGCGTTGAGATG+TGG + chr2_2:56611855-56611874 Msa0259570:intron 30.0%
GATGAATGCATTGAAAAACT+TGG + chr2_2:56611924-56611943 Msa0259570:intron 30.0%
AACGAACATGTACAATACAA+GGG - chr2_2:56612035-56612054 None:intergenic 30.0%
AAACGAACATGTACAATACA+AGG - chr2_2:56612036-56612055 None:intergenic 30.0%
AATTTATTTGGAGATGTGTG+TGG + chr2_2:56612088-56612107 Msa0259570:intron 30.0%
AAATCATGCTACAAAGTAGT+AGG - chr2_2:56612234-56612253 None:intergenic 30.0%
! AGAGTTACATGTTTTCAAAC+TGG + chr2_2:56612273-56612292 Msa0259570:intron 30.0%
! TAGCTAGAACATGTTACTTA+AGG - chr2_2:56612540-56612559 None:intergenic 30.0%
! CTAGCTACTAATTCTGTTTT+TGG + chr2_2:56612553-56612572 Msa0259570:intron 30.0%
! ATTAACATTGCTGTTGAATC+TGG + chr2_2:56612657-56612676 Msa0259570:CDS 30.0%
!! GCAACACATTTTATTTGCTT+TGG + chr2_2:56613174-56613193 Msa0259570:three_prime_UTR 30.0%
AGATAGCATGGAGATATATG+AGG - chr2_2:56610577-56610596 None:intergenic 35.0%
!!! GCCATTTTTCAAAGAGTTGA+AGG - chr2_2:56610655-56610674 None:intergenic 35.0%
! AACTCTTTGAAAAATGGCTG+TGG + chr2_2:56610657-56610676 Msa0259570:exon 35.0%
!! CTGCAAATGGATTTTTCCAA+AGG - chr2_2:56610739-56610758 None:intergenic 35.0%
! AACTAGGTAAGTACTTTTGG+TGG + chr2_2:56610822-56610841 Msa0259570:intron 35.0%
AAATACAACTAGGACGTGTT+TGG + chr2_2:56611055-56611074 Msa0259570:intron 35.0%
GTCCGAGAAACATTTATGTT+AGG + chr2_2:56611149-56611168 Msa0259570:intron 35.0%
CAAAATGGACACTTCATTTG+AGG - chr2_2:56611285-56611304 None:intergenic 35.0%
CGAGAGTTAAAAGGAAATGT+TGG - chr2_2:56611452-56611471 None:intergenic 35.0%
!! ATTTCCTTTTAACTCTCGTG+TGG + chr2_2:56611454-56611473 Msa0259570:intron 35.0%
ATAGACTGAAACTGACACAT+TGG - chr2_2:56611706-56611725 None:intergenic 35.0%
! CAACAAGTTTTCCATCACAA+AGG + chr2_2:56611996-56612015 Msa0259570:CDS 35.0%
AACTTTGATTGCAGTGATAC+AGG + chr2_2:56612111-56612130 Msa0259570:intron 35.0%
TAACATGATCACATATCACC+CGG + chr2_2:56612188-56612207 Msa0259570:CDS 35.0%
ATACCAATTTCAGCTTGATG+TGG + chr2_2:56612424-56612443 Msa0259570:intron 35.0%
ATCATCGGTGATTGTTAAGT+GGG - chr2_2:56612459-56612478 None:intergenic 35.0%
ACAAGATCAACCAATAATCC+AGG - chr2_2:56612621-56612640 None:intergenic 35.0%
! CATTTGGAGCATGAATATCT+TGG - chr2_2:56612715-56612734 None:intergenic 35.0%
! TTGTAAAATGTAGGGGCTTT+TGG + chr2_2:56612815-56612834 Msa0259570:intron 35.0%
AAGTTTCATGTCAGCTACAA+TGG + chr2_2:56612846-56612865 Msa0259570:CDS 35.0%
AAAATGCATGTGTACCTATC+TGG + chr2_2:56613066-56613085 Msa0259570:intron 35.0%
ACAATTTGCCACTCAAAAAC+TGG - chr2_2:56613147-56613166 None:intergenic 35.0%
CAAATGCATTGCCAATATTG+TGG - chr2_2:56613211-56613230 None:intergenic 35.0%
CACAATATTGGCAATGCATT+TGG + chr2_2:56613209-56613228 Msa0259570:three_prime_UTR 35.0%
AATATTGGCAATGCATTTGG+AGG + chr2_2:56613212-56613231 Msa0259570:three_prime_UTR 35.0%
TGGATAGGAGCAGATAAAAC+TGG - chr2_2:56610379-56610398 None:intergenic 40.0%
TGCTCCTATCCAACATAACA+AGG + chr2_2:56610387-56610406 Msa0259570:five_prime_UTR 40.0%
! CCATCCTTGTTATGTTGGAT+AGG - chr2_2:56610394-56610413 None:intergenic 40.0%
CCTATCCAACATAACAAGGA+TGG + chr2_2:56610391-56610410 Msa0259570:five_prime_UTR 40.0%
! CCATACCATCCTTGTTATGT+TGG - chr2_2:56610399-56610418 None:intergenic 40.0%
CCAACATAACAAGGATGGTA+TGG + chr2_2:56610396-56610415 Msa0259570:five_prime_UTR 40.0%
TTAAAAAGTGACGCGTTTGG+TGG - chr2_2:56610451-56610470 None:intergenic 40.0%
GTTCAATGAGACAGAAGACA+TGG - chr2_2:56610606-56610625 None:intergenic 40.0%
TTGAAAAATGGCTGTGGCTA+TGG + chr2_2:56610663-56610682 Msa0259570:exon 40.0%
CATAGAAGTGGTCTTCAAGA+TGG - chr2_2:56610767-56610786 None:intergenic 40.0%
GAATCAGCAACTTTAAGCAG+AGG - chr2_2:56610929-56610948 None:intergenic 40.0%
!! CTGCTTAAAGTTGCTGATTC+TGG + chr2_2:56610929-56610948 Msa0259570:intron 40.0%
TTGTTAATTGGGCTGATCGA+AGG + chr2_2:56611179-56611198 Msa0259570:intron 40.0%
!! ACAGCTGTTTCTGAGGTATT+TGG + chr2_2:56611369-56611388 Msa0259570:intron 40.0%
TTCTCCACACGAGAGTTAAA+AGG - chr2_2:56611461-56611480 None:intergenic 40.0%
CTTGGGACTGAATGTTGTTA+AGG + chr2_2:56611942-56611961 Msa0259570:CDS 40.0%
CAGTGATACAGGTAGAAAAG+TGG + chr2_2:56612122-56612141 Msa0259570:intron 40.0%
! TTTTGGACTTATGCCTCCAA+AGG + chr2_2:56612336-56612355 Msa0259570:CDS 40.0%
TGTCCACATCAAGCTGAAAT+TGG - chr2_2:56612430-56612449 None:intergenic 40.0%
CATCATCGGTGATTGTTAAG+TGG - chr2_2:56612460-56612479 None:intergenic 40.0%
CACTTAACAATCACCGATGA+TGG + chr2_2:56612458-56612477 Msa0259570:CDS 40.0%
ATCTGGTGAATTTGACACTG+AGG + chr2_2:56612674-56612693 Msa0259570:CDS 40.0%
TTAACAAGAACCTGCCAGAT+AGG - chr2_2:56613083-56613102 None:intergenic 40.0%
AAACTGGATTCCTCAGTTGT+AGG - chr2_2:56613131-56613150 None:intergenic 40.0%
!! TGAGGAATCCAGTTTTTGAG+TGG + chr2_2:56613136-56613155 Msa0259570:exon 40.0%
GAATATTGTTAGCCCAAAGC+TGG + chr2_2:56613244-56613263 Msa0259570:three_prime_UTR 40.0%
ACATGGCTTAGCAGATAGCA+TGG - chr2_2:56610589-56610608 None:intergenic 45.0%
AGAAGTGGTCTTCAAGATGG+AGG - chr2_2:56610764-56610783 None:intergenic 45.0%
!! CGTGTTTGGTGTTAGAAACG+AGG + chr2_2:56611069-56611088 Msa0259570:intron 45.0%
TTAACTCTCGTGTGGAGAAC+AGG + chr2_2:56611462-56611481 Msa0259570:intron 45.0%
GGAGAACAGGATGGAAATCA+AGG + chr2_2:56611475-56611494 Msa0259570:intron 45.0%
ACTGTCGTCGAGATTACCTT+TGG + chr2_2:56611559-56611578 Msa0259570:CDS 45.0%
! ATTACCTTTGGTGATCGCCT+TGG + chr2_2:56611571-56611590 Msa0259570:CDS 45.0%
TAGTGCTTACGCCTTTGTGA+TGG - chr2_2:56612010-56612029 None:intergenic 45.0%
GGAAGATCCAGAGTTGTTAG+AGG + chr2_2:56612143-56612162 Msa0259570:CDS 45.0%
! AACTGAGAAGCATAGGTACC+GGG - chr2_2:56612209-56612228 None:intergenic 45.0%
! CAACTGAGAAGCATAGGTAC+CGG - chr2_2:56612210-56612229 None:intergenic 45.0%
! GTAGGACAACTGAGAAGCAT+AGG - chr2_2:56612216-56612235 None:intergenic 45.0%
! TCAAGTGCCCAATTAGCTCT+AGG + chr2_2:56612307-56612326 Msa0259570:CDS 45.0%
AGCTGCTCCTAGAGCTAATT+GGG - chr2_2:56612317-56612336 None:intergenic 45.0%
AAGCTGCTCCTAGAGCTAAT+TGG - chr2_2:56612318-56612337 None:intergenic 45.0%
!!! TTAGCTCTAGGAGCAGCTTT+TGG + chr2_2:56612319-56612338 Msa0259570:CDS 45.0%
GAATTCATCACCTGCTCCTT+TGG - chr2_2:56612355-56612374 None:intergenic 45.0%
AAAGATCACCACCTTCTGTC+AGG - chr2_2:56612485-56612504 None:intergenic 45.0%
TGTATGTGGAGACAGCTGAT+CGG + chr2_2:56612595-56612614 Msa0259570:CDS 45.0%
!! AATGTAGGGGCTTTTGGCTA+AGG + chr2_2:56612821-56612840 Msa0259570:intron 45.0%
TGCATCAACCAATTACCTGC+TGG - chr2_2:56612893-56612912 None:intergenic 45.0%
GTGGAATGTACTCCAGCTTT+GGG - chr2_2:56613259-56613278 None:intergenic 45.0%
AGTGGAATGTACTCCAGCTT+TGG - chr2_2:56613260-56613279 None:intergenic 45.0%
CTTCTTGCTTTGCACTTCCA+CGG + chr2_2:56613344-56613363 Msa0259570:three_prime_UTR 45.0%
!! CAAGATGGAGGCACTGCAAA+TGG - chr2_2:56610752-56610771 None:intergenic 50.0%
CAACTTGGGAAGTGACTGCT+TGG + chr2_2:56611253-56611272 Msa0259570:intron 50.0%
CAGAAACAGCTGTTGCTCGA+GGG - chr2_2:56611362-56611381 None:intergenic 50.0%
TCAGAAACAGCTGTTGCTCG+AGG - chr2_2:56611363-56611382 None:intergenic 50.0%
!! TCGAGCAACAGCTGTTTCTG+AGG + chr2_2:56611362-56611381 Msa0259570:CDS 50.0%
ATCTCGACGACAGTTGCATC+AGG - chr2_2:56611553-56611572 None:intergenic 50.0%
TGTTAAGGCAAGCGTGTGTC+TGG + chr2_2:56611957-56611976 Msa0259570:CDS 50.0%
CGGATTGCCTCTAACAACTC+TGG - chr2_2:56612153-56612172 None:intergenic 50.0%
ACTTATGCCTCCAAAGGAGC+AGG + chr2_2:56612342-56612361 Msa0259570:CDS 50.0%
TTCATCACCTGCTCCTTTGG+AGG - chr2_2:56612352-56612371 None:intergenic 50.0%
CCTTCTGTCAGGACCATCAT+CGG - chr2_2:56612474-56612493 None:intergenic 50.0%
ATGATGGTCCTGACAGAAGG+TGG + chr2_2:56612474-56612493 Msa0259570:intron 50.0%
!! GTGCTGCAGTTTGCTGTATG+TGG + chr2_2:56612581-56612600 Msa0259570:intron 50.0%
AGCTGATCGGCCTGGATTAT+TGG + chr2_2:56612608-56612627 Msa0259570:CDS 50.0%
AAGCCTCTCCAGCAGGTAAT+TGG + chr2_2:56612882-56612901 Msa0259570:intron 50.0%
CAACCAATTACCTGCTGGAG+AGG - chr2_2:56612888-56612907 None:intergenic 50.0%
TGCATGTGTACCTATCTGGC+AGG + chr2_2:56613070-56613089 Msa0259570:intron 50.0%
! CTTGACTCGTCCTACAACTG+AGG + chr2_2:56613118-56613137 Msa0259570:CDS 50.0%
GCTATGGCTGCTTGCAGTCT+TGG + chr2_2:56610679-56610698 Msa0259570:CDS 55.0%
CTCTCGTGTGGAGAACAGGA+TGG + chr2_2:56611466-56611485 Msa0259570:intron 55.0%
AGCACCAAGGCGATCACCAA+AGG - chr2_2:56611578-56611597 None:intergenic 55.0%
!! CGGTGTCAAGAAGAGCACCA+AGG - chr2_2:56611591-56611610 None:intergenic 55.0%
AGCGTGTGTCTGGACTCTTC+TGG + chr2_2:56611967-56611986 Msa0259570:CDS 55.0%
! CCGATGATGGTCCTGACAGA+AGG + chr2_2:56612471-56612490 Msa0259570:CDS 55.0%
TACCTGCTGGAGAGGCTTGA+TGG - chr2_2:56612880-56612899 None:intergenic 55.0%
CTGCTGGAGAGGCTTGATGG+TGG - chr2_2:56612877-56612896 None:intergenic 60.0%
CACCATCAAGCCTCTCCAGC+AGG + chr2_2:56612875-56612894 Msa0259570:CDS 60.0%
GTGGAGACAGCTGATCGGCC+TGG + chr2_2:56612600-56612619 Msa0259570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56610359 56613417 56610359 ID=Msa0259570;Name=Msa0259570
chr2_2 mRNA 56610359 56613417 56610359 ID=Msa0259570-mRNA-1;Parent=Msa0259570;Name=Msa0259570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=311|1|1|1|1|1|10|263|289
chr2_2 exon 56610359 56610827 56610359 ID=Msa0259570-mRNA-1:exon:17171;Parent=Msa0259570-mRNA-1
chr2_2 exon 56611332 56611383 56611332 ID=Msa0259570-mRNA-1:exon:17172;Parent=Msa0259570-mRNA-1
chr2_2 exon 56611484 56611609 56611484 ID=Msa0259570-mRNA-1:exon:17173;Parent=Msa0259570-mRNA-1
chr2_2 exon 56611925 56612019 56611925 ID=Msa0259570-mRNA-1:exon:17174;Parent=Msa0259570-mRNA-1
chr2_2 exon 56612125 56612209 56612125 ID=Msa0259570-mRNA-1:exon:17175;Parent=Msa0259570-mRNA-1
chr2_2 exon 56612304 56612363 56612304 ID=Msa0259570-mRNA-1:exon:17176;Parent=Msa0259570-mRNA-1
chr2_2 exon 56612437 56612492 56612437 ID=Msa0259570-mRNA-1:exon:17177;Parent=Msa0259570-mRNA-1
chr2_2 exon 56612590 56612695 56612590 ID=Msa0259570-mRNA-1:exon:17178;Parent=Msa0259570-mRNA-1
chr2_2 exon 56612828 56612896 56612828 ID=Msa0259570-mRNA-1:exon:17179;Parent=Msa0259570-mRNA-1
chr2_2 exon 56613092 56613417 56613092 ID=Msa0259570-mRNA-1:exon:17180;Parent=Msa0259570-mRNA-1
chr2_2 five_prime_UTR 56610359 56610669 56610359 ID=Msa0259570-mRNA-1:five_prime_utr;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56610670 56610827 56610670 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56611332 56611383 56611332 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56611484 56611609 56611484 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56611925 56612019 56611925 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56612125 56612209 56612125 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56612304 56612363 56612304 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56612437 56612492 56612437 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56612590 56612695 56612590 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56612828 56612896 56612828 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 CDS 56613092 56613154 56613092 ID=Msa0259570-mRNA-1:cds;Parent=Msa0259570-mRNA-1
chr2_2 three_prime_UTR 56613155 56613417 56613155 ID=Msa0259570-mRNA-1:three_prime_utr;Parent=Msa0259570-mRNA-1
Gene Sequence

>Msa0259570

ATGGCTGTGGCTATGGCTGCTTGCAGTCTTGGACTTCACTTGAGTTCTGATAATAACTTCTTCAGACCTTTGGAAAAATCCATTTGCAGTGCCTCCATCTTGAAGACCACTTCTATGTATGATACTAGTAAACTATCTTTCAGTCTTCAAAAAACTAGATTATCATCTTCAGCAATTACAATCATCCCTCGAGCAACAGCTGTTTCTGAGGATGGAAATCAAGGTGTTGCTGATACTGTCCCAACACCTATAGTTATAATTGATCAAGACTCTGATCCTGATGCAACTGTCGTCGAGATTACCTTTGGTGATCGCCTTGGTGCTCTTCTTGACACCATGAATGCATTGAAAAACTTGGGACTGAATGTTGTTAAGGCAAGCGTGTGTCTGGACTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAGGCTGATACAGGTAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTTGACAATTTTAAATAACATGATCACATATCACCCGGAATCAAGTGCCCAATTAGCTCTAGGAGCAGCTTTTGGACTTATGCCTCCAAAGGAGCAGCTTGATGTGGACATAGCGACCCACTTAACAATCACCGATGATGGTCCTGACAGAAGTTTGCTGTATGTGGAGACAGCTGATCGGCCTGGATTATTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCTGGTGAATTTGACACTGAGGGGCTTTTGGCTAAGGCAAAGTTTCATGTCAGCTACAATGGTAAAGCCACCATCAAGCCTCTCCAGCAGGTTCTTGTTAACAGCTTGAGATACTTCTTGACTCGTCCTACAACTGAGGAATCCAGTTTTTGA

Protein sequence

>Msa0259570

MAVAMAACSLGLHLSSDNNFFRPLEKSICSASILKTTSMYDTSKLSFSLQKTRLSSSAITIIPRATAVSEDGNQGVADTVPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKASVCLDSSGKHNKFSITKADTGRKVEDPELLEAIRLTILNNMITYHPESSAQLALGAAFGLMPPKEQLDVDIATHLTITDDGPDRSLLYVETADRPGLLVDLVKIITDINIAVESGEFDTEGLLAKAKFHVSYNGKATIKPLQQVLVNSLRYFLTRPTTEESSF*