AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070000 MtrunA17_Chr7g0252301 95.294 85 4 0 1 85 1041 1125 2.98e-50 170
Msa1070000 MtrunA17_Chr6g0454621 54.118 85 39 0 1 85 1019 1103 2.27e-28 107
Msa1070000 MtrunA17_Chr6g0454661 52.941 85 40 0 1 85 1018 1102 3.41e-27 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070000 AT1G69270.1 56.250 80 35 0 1 80 447 526 8.64e-29 108
Msa1070000 AT3G02130.2 51.765 85 41 0 1 85 1041 1125 2.92e-27 104
Msa1070000 AT3G02130.1 51.765 85 41 0 1 85 1058 1142 3.01e-27 104

Find 21 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTATCATGGCAAAT+AGG 0.369275 7_2:+65864910 Msa1070000:CDS
TCATCGGCTTTGTGGGAAGT+AGG 0.415318 7_2:+65863605 Msa1070000:CDS
AATGACCGAAGGTCGTTGTT+CGG 0.420353 7_2:+65863574 Msa1070000:CDS
GTGCTGTTAGAATTGATATC+AGG 0.429448 7_2:+65863479 Msa1070000:CDS
AAATGTGAAAGGAAGAAGAT+AGG 0.488062 7_2:-65864981 None:intergenic
CATCGGCTTTGTGGGAAGTA+GGG 0.494413 7_2:+65863606 Msa1070000:CDS
CAGCTCCGAACAACGACCTT+CGG 0.511347 7_2:-65863579 None:intergenic
GGGCCCAAGGAAAAGTTGCT+AGG 0.532575 7_2:+65863626 Msa1070000:CDS
CAACTACAAAGAACTTATCA+TGG 0.535987 7_2:+65864902 Msa1070000:CDS
GAATCTCATTCTCATCATCA+TGG 0.551442 7_2:+65864932 Msa1070000:CDS
TAGAATTGATATCAGGAAGA+AGG 0.565176 7_2:+65863486 Msa1070000:CDS
GGCCCAAGGAAAAGTTGCTA+GGG 0.572102 7_2:+65863627 Msa1070000:CDS
TGGATTCAATATAGTACCAT+GGG 0.577276 7_2:+65863541 Msa1070000:CDS
ACTGTTGGCACAAATGTGAA+AGG 0.592986 7_2:-65864992 None:intergenic
GTCATTAGAAGCTCCGCCCA+TGG 0.593419 7_2:-65863557 None:intergenic
ATGGATTCAATATAGTACCA+TGG 0.597552 7_2:+65863540 Msa1070000:CDS
TCGAGAACATACTTCATCGA+CGG 0.635663 7_2:-65863698 None:intergenic
TTTCCATAATCAGAAAACGA+TGG 0.637352 7_2:-65863518 None:intergenic
TTTGTGGGAAGTAGGGCCCA+AGG 0.648786 7_2:+65863613 Msa1070000:CDS
GCGGAGCTTCTAATGACCGA+AGG 0.662028 7_2:+65863563 Msa1070000:CDS
ATTCAATATAGTACCATGGG+CGG 0.709872 7_2:+65863544 Msa1070000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACATAATTATTTACA+AGG - chr7_2:65864085-65864104 None:intergenic 10.0%
!!! TATAAAATAGTATTAGATTT+TGG - chr7_2:65864571-65864590 None:intergenic 10.0%
!!! AAAATCTAATACTATTTTAT+AGG + chr7_2:65864570-65864589 Msa1070000:intron 10.0%
!! AATAAAATATTTCACATTAT+GGG - chr7_2:65864793-65864812 None:intergenic 10.0%
!! TAATAAAATATTTCACATTA+TGG - chr7_2:65864794-65864813 None:intergenic 10.0%
!! AAAAAACATAATTATTTACA+AGG - chr7_2:65864085-65864104 None:intergenic 10.0%
!!! TATAAAATAGTATTAGATTT+TGG - chr7_2:65864571-65864590 None:intergenic 10.0%
!!! AAAATCTAATACTATTTTAT+AGG + chr7_2:65864570-65864589 Msa1070000:intron 10.0%
!! AATAAAATATTTCACATTAT+GGG - chr7_2:65864793-65864812 None:intergenic 10.0%
!! TAATAAAATATTTCACATTA+TGG - chr7_2:65864794-65864813 None:intergenic 10.0%
!!! AATTATGTTTTTTTTAGGAT+TGG + chr7_2:65864092-65864111 Msa1070000:intron 15.0%
!!! AATTATGTTTTTTTTAGGAT+TGG + chr7_2:65864092-65864111 Msa1070000:intron 15.0%
!! TTTGTTAAATAGTATACACA+TGG + chr7_2:65863905-65863924 Msa1070000:intron 20.0%
!! AAATATACTAGCAAAGTTTA+AGG - chr7_2:65863958-65863977 None:intergenic 20.0%
!!! AAAAGCATAAAAATGTTCTT+AGG - chr7_2:65864197-65864216 None:intergenic 20.0%
!!! GTTTTTTCACTAGAAAAAAA+TGG + chr7_2:65864311-65864330 Msa1070000:intron 20.0%
!!! TTGAAATCTAATCTTTTCAA+TGG - chr7_2:65864483-65864502 None:intergenic 20.0%
!! TTTGTTAAATAGTATACACA+TGG + chr7_2:65863905-65863924 Msa1070000:intron 20.0%
!! AAATATACTAGCAAAGTTTA+AGG - chr7_2:65863958-65863977 None:intergenic 20.0%
!!! AAAAGCATAAAAATGTTCTT+AGG - chr7_2:65864197-65864216 None:intergenic 20.0%
!!! GTTTTTTCACTAGAAAAAAA+TGG + chr7_2:65864311-65864330 Msa1070000:intron 20.0%
!!! TTGAAATCTAATCTTTTCAA+TGG - chr7_2:65864483-65864502 None:intergenic 20.0%
!! TTCTGATATTAATTTTCACG+TGG + chr7_2:65863859-65863878 Msa1070000:intron 25.0%
! ACGATTAGATGTTAGAAAAA+TGG - chr7_2:65864124-65864143 None:intergenic 25.0%
!! TTTTCACTAGAAAAAAATGG+CGG + chr7_2:65864314-65864333 Msa1070000:intron 25.0%
!! TTGTTCAAGCGAAATTTTTA+GGG + chr7_2:65864433-65864452 Msa1070000:intron 25.0%
! AATAAATTAACCGCTAACAT+TGG - chr7_2:65864596-65864615 None:intergenic 25.0%
! TGTTAGCGGTTAATTTATTA+AGG + chr7_2:65864597-65864616 Msa1070000:intron 25.0%
! GTTAGCGGTTAATTTATTAA+GGG + chr7_2:65864598-65864617 Msa1070000:intron 25.0%
! TTAGCGGTTAATTTATTAAG+GGG + chr7_2:65864599-65864618 Msa1070000:intron 25.0%
! AAATAAGAAATGTTAGTAGC+CGG + chr7_2:65864628-65864647 Msa1070000:intron 25.0%
! GGCATAGTAATAAAATAACA+TGG - chr7_2:65864772-65864791 None:intergenic 25.0%
! TTACAGATGACAAACAAAAA+AGG + chr7_2:65864867-65864886 Msa1070000:intron 25.0%
! TGTGTCAAAAAAATAACTGT+TGG - chr7_2:65865010-65865029 None:intergenic 25.0%
!! TTCTGATATTAATTTTCACG+TGG + chr7_2:65863859-65863878 Msa1070000:intron 25.0%
! ACGATTAGATGTTAGAAAAA+TGG - chr7_2:65864124-65864143 None:intergenic 25.0%
!! TTTTCACTAGAAAAAAATGG+CGG + chr7_2:65864314-65864333 Msa1070000:intron 25.0%
!! TTGTTCAAGCGAAATTTTTA+GGG + chr7_2:65864433-65864452 Msa1070000:intron 25.0%
! AATAAATTAACCGCTAACAT+TGG - chr7_2:65864596-65864615 None:intergenic 25.0%
! TGTTAGCGGTTAATTTATTA+AGG + chr7_2:65864597-65864616 Msa1070000:intron 25.0%
! GTTAGCGGTTAATTTATTAA+GGG + chr7_2:65864598-65864617 Msa1070000:intron 25.0%
! TTAGCGGTTAATTTATTAAG+GGG + chr7_2:65864599-65864618 Msa1070000:intron 25.0%
! AAATAAGAAATGTTAGTAGC+CGG + chr7_2:65864628-65864647 Msa1070000:intron 25.0%
! GGCATAGTAATAAAATAACA+TGG - chr7_2:65864772-65864791 None:intergenic 25.0%
! TTACAGATGACAAACAAAAA+AGG + chr7_2:65864867-65864886 Msa1070000:intron 25.0%
! TGTGTCAAAAAAATAACTGT+TGG - chr7_2:65865010-65865029 None:intergenic 25.0%
TAGAATTGATATCAGGAAGA+AGG + chr7_2:65863486-65863505 Msa1070000:CDS 30.0%
TTTCCATAATCAGAAAACGA+TGG - chr7_2:65863521-65863540 None:intergenic 30.0%
! TCGTTTTCTGATTATGGAAA+TGG + chr7_2:65863521-65863540 Msa1070000:CDS 30.0%
ATGGATTCAATATAGTACCA+TGG + chr7_2:65863540-65863559 Msa1070000:CDS 30.0%
TGGATTCAATATAGTACCAT+GGG + chr7_2:65863541-65863560 Msa1070000:CDS 30.0%
TATACTAGCAAAGTTTAAGG+TGG - chr7_2:65863955-65863974 None:intergenic 30.0%
! TTGTTGTATGGTAGATTTTC+TGG - chr7_2:65863985-65864004 None:intergenic 30.0%
!! CTTGAGGATATTTTGTTGTA+TGG - chr7_2:65863997-65864016 None:intergenic 30.0%
TTAGGATATTGACATCAAAC+AGG - chr7_2:65864179-65864198 None:intergenic 30.0%
! GTTGTTCAAGCGAAATTTTT+AGG + chr7_2:65864432-65864451 Msa1070000:intron 30.0%
!! TGTTCAAGCGAAATTTTTAG+GGG + chr7_2:65864434-65864453 Msa1070000:intron 30.0%
! ATCTAATCTTTTCAATGGAC+AGG - chr7_2:65864478-65864497 None:intergenic 30.0%
! ATTTTATAGGCCAATGTTAG+CGG + chr7_2:65864583-65864602 Msa1070000:intron 30.0%
GTTAATTTATTAAGGGGAGA+GGG + chr7_2:65864605-65864624 Msa1070000:intron 30.0%
AATAAGAAATGTTAGTAGCC+GGG + chr7_2:65864629-65864648 Msa1070000:intron 30.0%
! AGTTTTTATGTAGGACTAGA+AGG - chr7_2:65864668-65864687 None:intergenic 30.0%
! CACATAAGGAGTTTTTATGT+AGG - chr7_2:65864677-65864696 None:intergenic 30.0%
TGTGATCAAGTGTTAGATTT+AGG - chr7_2:65864742-65864761 None:intergenic 30.0%
TAAATCTAACACTTGATCAC+AGG + chr7_2:65864741-65864760 Msa1070000:intron 30.0%
AAATCTAACACTTGATCACA+GGG + chr7_2:65864742-65864761 Msa1070000:intron 30.0%
GTAAAACACGTGAAAAATGT+AGG - chr7_2:65864851-65864870 None:intergenic 30.0%
TGACAAACAAAAAAGGTTAC+AGG + chr7_2:65864874-65864893 Msa1070000:CDS 30.0%
CAACTACAAAGAACTTATCA+TGG + chr7_2:65864902-65864921 Msa1070000:CDS 30.0%
AAGAACTTATCATGGCAAAT+AGG + chr7_2:65864910-65864929 Msa1070000:CDS 30.0%
AAATGTGAAAGGAAGAAGAT+AGG - chr7_2:65864984-65865003 None:intergenic 30.0%
TAGAATTGATATCAGGAAGA+AGG + chr7_2:65863486-65863505 Msa1070000:CDS 30.0%
TTTCCATAATCAGAAAACGA+TGG - chr7_2:65863521-65863540 None:intergenic 30.0%
! TCGTTTTCTGATTATGGAAA+TGG + chr7_2:65863521-65863540 Msa1070000:CDS 30.0%
ATGGATTCAATATAGTACCA+TGG + chr7_2:65863540-65863559 Msa1070000:CDS 30.0%
TGGATTCAATATAGTACCAT+GGG + chr7_2:65863541-65863560 Msa1070000:CDS 30.0%
TATACTAGCAAAGTTTAAGG+TGG - chr7_2:65863955-65863974 None:intergenic 30.0%
! TTGTTGTATGGTAGATTTTC+TGG - chr7_2:65863985-65864004 None:intergenic 30.0%
!! CTTGAGGATATTTTGTTGTA+TGG - chr7_2:65863997-65864016 None:intergenic 30.0%
TTAGGATATTGACATCAAAC+AGG - chr7_2:65864179-65864198 None:intergenic 30.0%
! GTTGTTCAAGCGAAATTTTT+AGG + chr7_2:65864432-65864451 Msa1070000:intron 30.0%
!! TGTTCAAGCGAAATTTTTAG+GGG + chr7_2:65864434-65864453 Msa1070000:intron 30.0%
! ATCTAATCTTTTCAATGGAC+AGG - chr7_2:65864478-65864497 None:intergenic 30.0%
! ATTTTATAGGCCAATGTTAG+CGG + chr7_2:65864583-65864602 Msa1070000:intron 30.0%
GTTAATTTATTAAGGGGAGA+GGG + chr7_2:65864605-65864624 Msa1070000:intron 30.0%
AATAAGAAATGTTAGTAGCC+GGG + chr7_2:65864629-65864648 Msa1070000:intron 30.0%
! AGTTTTTATGTAGGACTAGA+AGG - chr7_2:65864668-65864687 None:intergenic 30.0%
! CACATAAGGAGTTTTTATGT+AGG - chr7_2:65864677-65864696 None:intergenic 30.0%
TGTGATCAAGTGTTAGATTT+AGG - chr7_2:65864742-65864761 None:intergenic 30.0%
TAAATCTAACACTTGATCAC+AGG + chr7_2:65864741-65864760 Msa1070000:intron 30.0%
AAATCTAACACTTGATCACA+GGG + chr7_2:65864742-65864761 Msa1070000:intron 30.0%
GTAAAACACGTGAAAAATGT+AGG - chr7_2:65864851-65864870 None:intergenic 30.0%
TGACAAACAAAAAAGGTTAC+AGG + chr7_2:65864874-65864893 Msa1070000:CDS 30.0%
CAACTACAAAGAACTTATCA+TGG + chr7_2:65864902-65864921 Msa1070000:CDS 30.0%
AAGAACTTATCATGGCAAAT+AGG + chr7_2:65864910-65864929 Msa1070000:CDS 30.0%
AAATGTGAAAGGAAGAAGAT+AGG - chr7_2:65864984-65865003 None:intergenic 30.0%
! GTGCTGTTAGAATTGATATC+AGG + chr7_2:65863479-65863498 Msa1070000:CDS 35.0%
! GATCCATCGTTTTCTGATTA+TGG + chr7_2:65863515-65863534 Msa1070000:CDS 35.0%
ATTCAATATAGTACCATGGG+CGG + chr7_2:65863544-65863563 Msa1070000:CDS 35.0%
CAAATCATACTGAACAGCAA+AGG + chr7_2:65863756-65863775 Msa1070000:intron 35.0%
GAATGATAAGAGAAAGTTGC+AGG - chr7_2:65863842-65863861 None:intergenic 35.0%
!! GAGCAAAAGAAAGTATCTTG+AGG - chr7_2:65864013-65864032 None:intergenic 35.0%
AAATCAGTGCATATCTCATC+AGG - chr7_2:65864035-65864054 None:intergenic 35.0%
GTATGGATTCAACAGAGAAA+GGG - chr7_2:65864223-65864242 None:intergenic 35.0%
AGTATGGATTCAACAGAGAA+AGG - chr7_2:65864224-65864243 None:intergenic 35.0%
ACTAGAAAAAAATGGCGGTA+TGG + chr7_2:65864319-65864338 Msa1070000:intron 35.0%
AGATGCCTGCCATTATTATA+GGG + chr7_2:65864342-65864361 Msa1070000:intron 35.0%
GGTTAATTTATTAAGGGGAG+AGG + chr7_2:65864604-65864623 Msa1070000:intron 35.0%
ATAAGAAATGTTAGTAGCCG+GGG + chr7_2:65864630-65864649 Msa1070000:intron 35.0%
GAATCTCATTCTCATCATCA+TGG + chr7_2:65864932-65864951 Msa1070000:CDS 35.0%
! GTGCTGTTAGAATTGATATC+AGG + chr7_2:65863479-65863498 Msa1070000:CDS 35.0%
! GATCCATCGTTTTCTGATTA+TGG + chr7_2:65863515-65863534 Msa1070000:CDS 35.0%
ATTCAATATAGTACCATGGG+CGG + chr7_2:65863544-65863563 Msa1070000:CDS 35.0%
CAAATCATACTGAACAGCAA+AGG + chr7_2:65863756-65863775 Msa1070000:intron 35.0%
GAATGATAAGAGAAAGTTGC+AGG - chr7_2:65863842-65863861 None:intergenic 35.0%
!! GAGCAAAAGAAAGTATCTTG+AGG - chr7_2:65864013-65864032 None:intergenic 35.0%
AAATCAGTGCATATCTCATC+AGG - chr7_2:65864035-65864054 None:intergenic 35.0%
GTATGGATTCAACAGAGAAA+GGG - chr7_2:65864223-65864242 None:intergenic 35.0%
AGTATGGATTCAACAGAGAA+AGG - chr7_2:65864224-65864243 None:intergenic 35.0%
ACTAGAAAAAAATGGCGGTA+TGG + chr7_2:65864319-65864338 Msa1070000:intron 35.0%
AGATGCCTGCCATTATTATA+GGG + chr7_2:65864342-65864361 Msa1070000:intron 35.0%
GGTTAATTTATTAAGGGGAG+AGG + chr7_2:65864604-65864623 Msa1070000:intron 35.0%
ATAAGAAATGTTAGTAGCCG+GGG + chr7_2:65864630-65864649 Msa1070000:intron 35.0%
GAATCTCATTCTCATCATCA+TGG + chr7_2:65864932-65864951 Msa1070000:CDS 35.0%
!! TTGTTCGGAGCTGTTTTCAT+CGG + chr7_2:65863589-65863608 Msa1070000:CDS 40.0%
TCGAGAACATACTTCATCGA+CGG - chr7_2:65863701-65863720 None:intergenic 40.0%
! CAGCAAAGGAATACTGCTTT+TGG + chr7_2:65863770-65863789 Msa1070000:intron 40.0%
! TTGCTGGAAAATACTGACTG+AGG + chr7_2:65863793-65863812 Msa1070000:intron 40.0%
GTTGCAGGAGTAGAATATGT+TGG - chr7_2:65863827-65863846 None:intergenic 40.0%
! CTAGCAAAGTTTAAGGTGGA+TGG - chr7_2:65863951-65863970 None:intergenic 40.0%
TGAGCATCTCATCTCAAAAG+AGG + chr7_2:65864245-65864264 Msa1070000:intron 40.0%
GAGCATCTCATCTCAAAAGA+GGG + chr7_2:65864246-65864265 Msa1070000:intron 40.0%
GAGATGCCTGCCATTATTAT+AGG + chr7_2:65864341-65864360 Msa1070000:intron 40.0%
ACCAGGTGTTCTTCATGATA+AGG + chr7_2:65864409-65864428 Msa1070000:intron 40.0%
CCAGGTGTTCTTCATGATAA+GGG + chr7_2:65864410-65864429 Msa1070000:intron 40.0%
! ATTGTTGATGAGAGCCAAAG+CGG - chr7_2:65864534-65864553 None:intergenic 40.0%
ATGTAGGACTAGAAGGTCTA+AGG - chr7_2:65864661-65864680 None:intergenic 40.0%
TTAGATTTAGGCTTCCCTGA+AGG - chr7_2:65864730-65864749 None:intergenic 40.0%
ACTGTTGGCACAAATGTGAA+AGG - chr7_2:65864995-65865014 None:intergenic 40.0%
!! TTGTTCGGAGCTGTTTTCAT+CGG + chr7_2:65863589-65863608 Msa1070000:CDS 40.0%
TCGAGAACATACTTCATCGA+CGG - chr7_2:65863701-65863720 None:intergenic 40.0%
! CAGCAAAGGAATACTGCTTT+TGG + chr7_2:65863770-65863789 Msa1070000:intron 40.0%
! TTGCTGGAAAATACTGACTG+AGG + chr7_2:65863793-65863812 Msa1070000:intron 40.0%
GTTGCAGGAGTAGAATATGT+TGG - chr7_2:65863827-65863846 None:intergenic 40.0%
! CTAGCAAAGTTTAAGGTGGA+TGG - chr7_2:65863951-65863970 None:intergenic 40.0%
TGAGCATCTCATCTCAAAAG+AGG + chr7_2:65864245-65864264 Msa1070000:intron 40.0%
GAGCATCTCATCTCAAAAGA+GGG + chr7_2:65864246-65864265 Msa1070000:intron 40.0%
GAGATGCCTGCCATTATTAT+AGG + chr7_2:65864341-65864360 Msa1070000:intron 40.0%
ACCAGGTGTTCTTCATGATA+AGG + chr7_2:65864409-65864428 Msa1070000:intron 40.0%
CCAGGTGTTCTTCATGATAA+GGG + chr7_2:65864410-65864429 Msa1070000:intron 40.0%
! ATTGTTGATGAGAGCCAAAG+CGG - chr7_2:65864534-65864553 None:intergenic 40.0%
ATGTAGGACTAGAAGGTCTA+AGG - chr7_2:65864661-65864680 None:intergenic 40.0%
TTAGATTTAGGCTTCCCTGA+AGG - chr7_2:65864730-65864749 None:intergenic 40.0%
ACTGTTGGCACAAATGTGAA+AGG - chr7_2:65864995-65865014 None:intergenic 40.0%
AATGACCGAAGGTCGTTGTT+CGG + chr7_2:65863574-65863593 Msa1070000:CDS 45.0%
!!! AGCTGTTTTCATCGGCTTTG+TGG + chr7_2:65863597-65863616 Msa1070000:CDS 45.0%
!!! GCTGTTTTCATCGGCTTTGT+GGG + chr7_2:65863598-65863617 Msa1070000:CDS 45.0%
! AGCCCTAGCAACTTTTCCTT+GGG - chr7_2:65863632-65863651 None:intergenic 45.0%
! AAGCCCTAGCAACTTTTCCT+TGG - chr7_2:65863633-65863652 None:intergenic 45.0%
!! GGAATACTGCTTTTGGTTGC+TGG + chr7_2:65863777-65863796 Msa1070000:intron 45.0%
GAGATGAGATGCTCAGAGTA+TGG - chr7_2:65864240-65864259 None:intergenic 45.0%
CCCTTATCATGAAGAACACC+TGG - chr7_2:65864413-65864432 None:intergenic 45.0%
AGCGAAAGTGGTCATGAATC+TGG - chr7_2:65864508-65864527 None:intergenic 45.0%
! TTGTTGATGAGAGCCAAAGC+GGG - chr7_2:65864533-65864552 None:intergenic 45.0%
!! GGGTTGAGTTGAGACACATA+AGG - chr7_2:65864691-65864710 None:intergenic 45.0%
TCAACTCAACCCATACCACT+AGG + chr7_2:65864699-65864718 Msa1070000:intron 45.0%
AAGGAGTAGCCTAGTGGTAT+GGG - chr7_2:65864711-65864730 None:intergenic 45.0%
TCTAACACTTGATCACAGGG+TGG + chr7_2:65864745-65864764 Msa1070000:intron 45.0%
AATGACCGAAGGTCGTTGTT+CGG + chr7_2:65863574-65863593 Msa1070000:CDS 45.0%
!!! AGCTGTTTTCATCGGCTTTG+TGG + chr7_2:65863597-65863616 Msa1070000:CDS 45.0%
!!! GCTGTTTTCATCGGCTTTGT+GGG + chr7_2:65863598-65863617 Msa1070000:CDS 45.0%
! AGCCCTAGCAACTTTTCCTT+GGG - chr7_2:65863632-65863651 None:intergenic 45.0%
! AAGCCCTAGCAACTTTTCCT+TGG - chr7_2:65863633-65863652 None:intergenic 45.0%
!! GGAATACTGCTTTTGGTTGC+TGG + chr7_2:65863777-65863796 Msa1070000:intron 45.0%
GAGATGAGATGCTCAGAGTA+TGG - chr7_2:65864240-65864259 None:intergenic 45.0%
CCCTTATCATGAAGAACACC+TGG - chr7_2:65864413-65864432 None:intergenic 45.0%
AGCGAAAGTGGTCATGAATC+TGG - chr7_2:65864508-65864527 None:intergenic 45.0%
! TTGTTGATGAGAGCCAAAGC+GGG - chr7_2:65864533-65864552 None:intergenic 45.0%
!! GGGTTGAGTTGAGACACATA+AGG - chr7_2:65864691-65864710 None:intergenic 45.0%
TCAACTCAACCCATACCACT+AGG + chr7_2:65864699-65864718 Msa1070000:intron 45.0%
AAGGAGTAGCCTAGTGGTAT+GGG - chr7_2:65864711-65864730 None:intergenic 45.0%
TCTAACACTTGATCACAGGG+TGG + chr7_2:65864745-65864764 Msa1070000:intron 45.0%
!!! TAAATAATTATGTTTTTTTT+AGG + chr7_2:65864087-65864106 Msa1070000:intron 5.0%
!!! TAAATAATTATGTTTTTTTT+AGG + chr7_2:65864087-65864106 Msa1070000:intron 5.0%
!! TCATCGGCTTTGTGGGAAGT+AGG + chr7_2:65863605-65863624 Msa1070000:CDS 50.0%
!! CATCGGCTTTGTGGGAAGTA+GGG + chr7_2:65863606-65863625 Msa1070000:CDS 50.0%
GGCCCAAGGAAAAGTTGCTA+GGG + chr7_2:65863627-65863646 Msa1070000:CDS 50.0%
GCCTGCCATTATTATAGGGC+AGG + chr7_2:65864346-65864365 Msa1070000:intron 50.0%
GCCTGCCCTATAATAATGGC+AGG - chr7_2:65864350-65864369 None:intergenic 50.0%
TGCGGTAATCGTACCATTGG+CGG - chr7_2:65864372-65864391 None:intergenic 50.0%
CTGTGCGGTAATCGTACCAT+TGG - chr7_2:65864375-65864394 None:intergenic 50.0%
CAATGGTACGATTACCGCAC+AGG + chr7_2:65864373-65864392 Msa1070000:intron 50.0%
! AACACCTGGTGCCAAGGTTT+AGG - chr7_2:65864399-65864418 None:intergenic 50.0%
! ATGAAGAACACCTGGTGCCA+AGG - chr7_2:65864405-65864424 None:intergenic 50.0%
GAAGGAGTAGCCTAGTGGTA+TGG - chr7_2:65864712-65864731 None:intergenic 50.0%
TACCACTAGGCTACTCCTTC+AGG + chr7_2:65864712-65864731 Msa1070000:intron 50.0%
ACCACTAGGCTACTCCTTCA+GGG + chr7_2:65864713-65864732 Msa1070000:intron 50.0%
!! TCATCGGCTTTGTGGGAAGT+AGG + chr7_2:65863605-65863624 Msa1070000:CDS 50.0%
!! CATCGGCTTTGTGGGAAGTA+GGG + chr7_2:65863606-65863625 Msa1070000:CDS 50.0%
GGCCCAAGGAAAAGTTGCTA+GGG + chr7_2:65863627-65863646 Msa1070000:CDS 50.0%
GCCTGCCATTATTATAGGGC+AGG + chr7_2:65864346-65864365 Msa1070000:intron 50.0%
GCCTGCCCTATAATAATGGC+AGG - chr7_2:65864350-65864369 None:intergenic 50.0%
TGCGGTAATCGTACCATTGG+CGG - chr7_2:65864372-65864391 None:intergenic 50.0%
CTGTGCGGTAATCGTACCAT+TGG - chr7_2:65864375-65864394 None:intergenic 50.0%
CAATGGTACGATTACCGCAC+AGG + chr7_2:65864373-65864392 Msa1070000:intron 50.0%
! AACACCTGGTGCCAAGGTTT+AGG - chr7_2:65864399-65864418 None:intergenic 50.0%
! ATGAAGAACACCTGGTGCCA+AGG - chr7_2:65864405-65864424 None:intergenic 50.0%
GAAGGAGTAGCCTAGTGGTA+TGG - chr7_2:65864712-65864731 None:intergenic 50.0%
TACCACTAGGCTACTCCTTC+AGG + chr7_2:65864712-65864731 Msa1070000:intron 50.0%
ACCACTAGGCTACTCCTTCA+GGG + chr7_2:65864713-65864732 Msa1070000:intron 50.0%
GTCATTAGAAGCTCCGCCCA+TGG - chr7_2:65863560-65863579 None:intergenic 55.0%
GCGGAGCTTCTAATGACCGA+AGG + chr7_2:65863563-65863582 Msa1070000:CDS 55.0%
CAGCTCCGAACAACGACCTT+CGG - chr7_2:65863582-65863601 None:intergenic 55.0%
TTTGTGGGAAGTAGGGCCCA+AGG + chr7_2:65863613-65863632 Msa1070000:CDS 55.0%
GGGCCCAAGGAAAAGTTGCT+AGG + chr7_2:65863626-65863645 Msa1070000:CDS 55.0%
GGCGGCCTGCCCTATAATAA+TGG - chr7_2:65864354-65864373 None:intergenic 55.0%
ATTATAGGGCAGGCCGCCAA+TGG + chr7_2:65864356-65864375 Msa1070000:intron 55.0%
TACCGCACAGGCCTAAACCT+TGG + chr7_2:65864385-65864404 Msa1070000:intron 55.0%
TGCCAAGGTTTAGGCCTGTG+CGG - chr7_2:65864390-65864409 None:intergenic 55.0%
CCAAAGCGGGATAGCGAAAG+TGG - chr7_2:65864520-65864539 None:intergenic 55.0%
CCACTTTCGCTATCCCGCTT+TGG + chr7_2:65864517-65864536 Msa1070000:intron 55.0%
! GAAGGTCTAAGGTTCGACCC+CGG - chr7_2:65864650-65864669 None:intergenic 55.0%
TCCCTGAAGGAGTAGCCTAG+TGG - chr7_2:65864717-65864736 None:intergenic 55.0%
GTCATTAGAAGCTCCGCCCA+TGG - chr7_2:65863560-65863579 None:intergenic 55.0%
GCGGAGCTTCTAATGACCGA+AGG + chr7_2:65863563-65863582 Msa1070000:CDS 55.0%
CAGCTCCGAACAACGACCTT+CGG - chr7_2:65863582-65863601 None:intergenic 55.0%
TTTGTGGGAAGTAGGGCCCA+AGG + chr7_2:65863613-65863632 Msa1070000:CDS 55.0%
GGGCCCAAGGAAAAGTTGCT+AGG + chr7_2:65863626-65863645 Msa1070000:CDS 55.0%
GGCGGCCTGCCCTATAATAA+TGG - chr7_2:65864354-65864373 None:intergenic 55.0%
ATTATAGGGCAGGCCGCCAA+TGG + chr7_2:65864356-65864375 Msa1070000:intron 55.0%
TACCGCACAGGCCTAAACCT+TGG + chr7_2:65864385-65864404 Msa1070000:intron 55.0%
TGCCAAGGTTTAGGCCTGTG+CGG - chr7_2:65864390-65864409 None:intergenic 55.0%
CCAAAGCGGGATAGCGAAAG+TGG - chr7_2:65864520-65864539 None:intergenic 55.0%
CCACTTTCGCTATCCCGCTT+TGG + chr7_2:65864517-65864536 Msa1070000:intron 55.0%
! GAAGGTCTAAGGTTCGACCC+CGG - chr7_2:65864650-65864669 None:intergenic 55.0%
TCCCTGAAGGAGTAGCCTAG+TGG - chr7_2:65864717-65864736 None:intergenic 55.0%
CAGGCCTAAACCTTGGCACC+AGG + chr7_2:65864392-65864411 Msa1070000:intron 60.0%
CAGGCCTAAACCTTGGCACC+AGG + chr7_2:65864392-65864411 Msa1070000:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 65863470 65865039 65863470 ID=Msa1070000;Name=Msa1070000
chr7_2 mRNA 65863470 65865039 65863470 ID=Msa1070000-mRNA-1;Parent=Msa1070000;Name=Msa1070000-mRNA-1;_AED=0.15;_eAED=0.36;_QI=0|0|0.5|1|0|0|2|74|111
chr7_2 exon 65863470 65863712 65863470 ID=Msa1070000-mRNA-1:exon:13905;Parent=Msa1070000-mRNA-1
chr7_2 exon 65864873 65865039 65864873 ID=Msa1070000-mRNA-1:exon:13906;Parent=Msa1070000-mRNA-1
chr7_2 CDS 65863470 65863712 65863470 ID=Msa1070000-mRNA-1:cds;Parent=Msa1070000-mRNA-1
chr7_2 CDS 65864873 65864965 65864873 ID=Msa1070000-mRNA-1:cds;Parent=Msa1070000-mRNA-1
chr7_2 three_prime_UTR 65864966 65865039 65864966 ID=Msa1070000-mRNA-1:three_prime_utr;Parent=Msa1070000-mRNA-1
Gene Sequence

>Msa1070000

TACGGTGTAGTGCTGTTAGAATTGATATCAGGAAGAAGGTCACTTGATCCATCGTTTTCTGATTATGGAAATGGATTCAATATAGTACCATGGGCGGAGCTTCTAATGACCGAAGGTCGTTGTTCGGAGCTGTTTTCATCGGCTTTGTGGGAAGTAGGGCCCAAGGAAAAGTTGCTAGGGCTTTTAAAGATTGCATTAACTTGCACAGAAGAGACTCTTTCTATTCGACCGTCGATGAAGTATATGACAAACAAAAAAGGTTACAGGTACAGCAACTACAAAGAACTTATCATGGCAAATAGGAATCTCATTCTCATCATCATGGCAAAGTTATGA

Protein sequence

>Msa1070000

YGVVLLELISGRRSLDPSFSDYGNGFNIVPWAELLMTEGRCSELFSSALWEVGPKEKLLGLLKIALTCTEETLSIRPSMKYMTNKKGYRYSNYKELIMANRNLILIIMAKL*