Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984660 | XP_013451743.1 | 95.364 | 151 | 7 | 0 | 18 | 168 | 18 | 168 | 2.22e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984660 | A0A072U8R2 | 95.364 | 151 | 7 | 0 | 18 | 168 | 18 | 168 | 1.06e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033670 | Msa0984660 | 0.820216 | 7.713320e-53 | -8.615850e-47 |
| Msa0037300 | Msa0984660 | 0.805333 | 1.404448e-49 | -8.615850e-47 |
| Msa0042210 | Msa0984660 | 0.806390 | 8.418361e-50 | -8.615850e-47 |
| Msa0046800 | Msa0984660 | 0.807836 | 4.160648e-50 | -8.615850e-47 |
| Msa0064490 | Msa0984660 | 0.809286 | 2.039818e-50 | -8.615850e-47 |
| Msa0075080 | Msa0984660 | 0.805309 | 1.420854e-49 | -8.615850e-47 |
| Msa0089700 | Msa0984660 | 0.804526 | 2.070490e-49 | -8.615850e-47 |
| Msa0619960 | Msa0984660 | 0.817518 | 3.163349e-52 | -8.615850e-47 |
| Msa0620050 | Msa0984660 | 0.825543 | 4.426042e-54 | -8.615850e-47 |
| Msa0673620 | Msa0984660 | 0.802162 | 6.393504e-49 | -8.615850e-47 |
| Msa0693050 | Msa0984660 | 0.800415 | 1.456581e-48 | -8.615850e-47 |
| Msa0695470 | Msa0984660 | 0.801582 | 8.413751e-49 | -8.615850e-47 |
| Msa0697610 | Msa0984660 | 0.807718 | 4.408405e-50 | -8.615850e-47 |
| Msa0699200 | Msa0984660 | 0.839372 | 1.647837e-57 | -8.615850e-47 |
| Msa0751490 | Msa0984660 | 0.800593 | 1.340360e-48 | -8.615850e-47 |
| Msa0770050 | Msa0984660 | 0.804107 | 2.532275e-49 | -8.615850e-47 |
| Msa0841570 | Msa0984660 | 0.808123 | 3.614223e-50 | -8.615850e-47 |
| Msa0123960 | Msa0984660 | 0.802565 | 5.281148e-49 | -8.615850e-47 |
| Msa0145590 | Msa0984660 | 0.820189 | 7.821691e-53 | -8.615850e-47 |
| Msa0162170 | Msa0984660 | 0.804486 | 2.110946e-49 | -8.615850e-47 |
| Msa0164530 | Msa0984660 | 0.821837 | 3.265731e-53 | -8.615850e-47 |
| Msa0178020 | Msa0984660 | 0.801576 | 8.437690e-49 | -8.615850e-47 |
| Msa0224180 | Msa0984660 | 0.816755 | 4.694489e-52 | -8.615850e-47 |
| Msa0234930 | Msa0984660 | 0.816568 | 5.170935e-52 | -8.615850e-47 |
| Msa0379360 | Msa0984660 | 0.807573 | 4.731962e-50 | -8.615850e-47 |
| Msa0390760 | Msa0984660 | 0.815674 | 8.192804e-52 | -8.615850e-47 |
| Msa0397420 | Msa0984660 | 0.800216 | 1.598986e-48 | -8.615850e-47 |
| Msa0415060 | Msa0984660 | 0.809699 | 1.663028e-50 | -8.615850e-47 |
| Msa0415860 | Msa0984660 | 0.816754 | 4.697543e-52 | -8.615850e-47 |
| Msa0417140 | Msa0984660 | 0.805999 | 1.017911e-49 | -8.615850e-47 |
| Msa0428280 | Msa0984660 | 0.812254 | 4.650751e-51 | -8.615850e-47 |
| Msa0428870 | Msa0984660 | 0.808112 | 3.634368e-50 | -8.615850e-47 |
| Msa0431550 | Msa0984660 | 0.808222 | 3.444191e-50 | -8.615850e-47 |
| Msa0463980 | Msa0984660 | 0.804972 | 1.670981e-49 | -8.615850e-47 |
| Msa0984660 | Msa1032560 | 0.805347 | 1.394477e-49 | -8.615850e-47 |
| Msa0984660 | Msa1126320 | 0.807337 | 5.308888e-50 | -8.615850e-47 |
| Msa0984660 | Msa1131300 | 0.801985 | 6.954320e-49 | -8.615850e-47 |
| Msa0984660 | Msa1163130 | 0.801674 | 8.056243e-49 | -8.615850e-47 |
| Msa0984660 | Msa1163230 | 0.812562 | 3.983438e-51 | -8.615850e-47 |
| Msa0984660 | Msa1190670 | 0.803986 | 2.683377e-49 | -8.615850e-47 |
| Msa0984660 | Msa1206500 | 0.812736 | 3.649509e-51 | -8.615850e-47 |
| Msa0984660 | Msa1208630 | 0.819164 | 1.341191e-52 | -8.615850e-47 |
| Msa0984660 | Msa1244940 | 0.811145 | 8.105612e-51 | -8.615850e-47 |
| Msa0984660 | Msa1267560 | 0.818916 | 1.527003e-52 | -8.615850e-47 |
| Msa0984660 | Msa1278120 | 0.815585 | 8.575664e-52 | -8.615850e-47 |
| Msa0984660 | Msa1297550 | 0.817979 | 2.489968e-52 | -8.615850e-47 |
| Msa0984660 | Msa1325260 | 0.808561 | 2.915559e-50 | -8.615850e-47 |
| Msa0984660 | Msa1325560 | 0.833076 | 6.563034e-56 | -8.615850e-47 |
| Msa0984660 | Msa1375570 | 0.803934 | 2.749868e-49 | -8.615850e-47 |
| Msa0984660 | Msa1376680 | 0.811168 | 8.013945e-51 | -8.615850e-47 |
| Msa0984660 | Msa1388010 | 0.800368 | 1.489642e-48 | -8.615850e-47 |
| Msa0984660 | Msa1400830 | 0.826206 | 3.081193e-54 | -8.615850e-47 |
| Msa0984660 | Msa1403590 | 0.805535 | 1.273699e-49 | -8.615850e-47 |
| Msa0984660 | Msa1411390 | 0.800924 | 1.146802e-48 | -8.615850e-47 |
| Msa0984660 | Msa1439880 | 0.802130 | 6.492554e-49 | -8.615850e-47 |
| Msa0984660 | Msa1455560 | 0.836249 | 1.045532e-56 | -8.615850e-47 |
| Msa0984660 | Msa1462700 | 0.807133 | 5.864496e-50 | -8.615850e-47 |
| Msa0273270 | Msa0984660 | 0.812714 | 3.689102e-51 | -8.615850e-47 |
| Msa0284980 | Msa0984660 | 0.811147 | 8.098063e-51 | -8.615850e-47 |
| Msa0294170 | Msa0984660 | 0.819820 | 9.500327e-53 | -8.615850e-47 |
| Msa0514630 | Msa0984660 | 0.802941 | 4.418267e-49 | -8.615850e-47 |
| Msa0515730 | Msa0984660 | 0.804342 | 2.261523e-49 | -8.615850e-47 |
| Msa0543010 | Msa0984660 | 0.826655 | 2.407587e-54 | -8.615850e-47 |
| Msa0562040 | Msa0984660 | 0.811836 | 5.736327e-51 | -8.615850e-47 |
| Msa0879820 | Msa0984660 | 0.804849 | 1.773248e-49 | -8.615850e-47 |
| Msa0978540 | Msa0984660 | 0.803428 | 3.502570e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984660 | MtrunA17_Chr6g0463111 | 95.364 | 151 | 7 | 0 | 18 | 168 | 18 | 168 | 2.04e-105 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984660 | AT5G52960.1 | 70.248 | 121 | 32 | 1 | 48 | 168 | 54 | 170 | 3.89e-59 | 182 |
Find 55 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAAGCTTTGCAAATTC+TGG | 0.184604 | 6_4:-30173395 | None:intergenic |
| AGCAGCAGTTATACTTTGTT+TGG | 0.204570 | 6_4:-30173531 | Msa0984660:three_prime_UTR |
| TCCTTTCAATAGAATGAAAT+TGG | 0.221222 | 6_4:+30173646 | None:intergenic |
| TGAAGCTTGGTTGAAAAGTT+TGG | 0.240536 | 6_4:-30176618 | Msa0984660:CDS |
| GCATAAAACAATGGTGGAAA+TGG | 0.290226 | 6_4:+30176751 | None:intergenic |
| TTCAATTATCGACAAAACTA+TGG | 0.291019 | 6_4:+30173592 | None:intergenic |
| TTGAAACTTAATAAGTTTCA+TGG | 0.292685 | 6_4:-30173574 | Msa0984660:three_prime_UTR |
| TACTTTCAAAATATACAATA+TGG | 0.294213 | 6_4:-30173722 | Msa0984660:three_prime_UTR |
| GAAGCTTGGTTGAAAAGTTT+GGG | 0.295163 | 6_4:-30176617 | Msa0984660:CDS |
| GAAAGGAAAATTGCTATCTA+TGG | 0.307368 | 6_4:+30173745 | None:intergenic |
| TTCTGAAGCCACTCATCTTC+AGG | 0.314119 | 6_4:+30176689 | None:intergenic |
| GCAGCAGTTATACTTTGTTT+GGG | 0.350230 | 6_4:-30173530 | Msa0984660:three_prime_UTR |
| TTAATCAGAGTAAGGATGAT+AGG | 0.370877 | 6_4:-30176592 | Msa0984660:CDS |
| AAATGGGTTGTGTGAAAGAT+TGG | 0.398264 | 6_4:+30176824 | None:intergenic |
| TTTGCAAAATCAAATTTGTA+AGG | 0.404503 | 6_4:+30173433 | None:intergenic |
| CATAAAACAATGGTGGAAAT+GGG | 0.419809 | 6_4:+30176752 | None:intergenic |
| TTTGGGGTTTAATCAGAGTA+AGG | 0.421850 | 6_4:-30176600 | Msa0984660:CDS |
| CCACTCATCTTCAGGAACTA+AGG | 0.427512 | 6_4:+30176697 | None:intergenic |
| TCCAATTTCATTCTATTGAA+AGG | 0.430555 | 6_4:-30173647 | Msa0984660:three_prime_UTR |
| TGCTGCTAAGGGAAAACAAA+GGG | 0.439374 | 6_4:+30173547 | None:intergenic |
| TTCAACCAAGCTTCAATACA+AGG | 0.447618 | 6_4:+30176626 | None:intergenic |
| GGTGGTGTTTGTGAATGTTA+AGG | 0.450789 | 6_4:+30176883 | None:intergenic |
| ATGTCACTGACCTCTATGTT+AGG | 0.452445 | 6_4:-30176520 | Msa0984660:intron |
| TACAAAGGCTTAGTCTTCTC+AGG | 0.453494 | 6_4:+30176662 | None:intergenic |
| AATATGGTTTAATTCCTTGT+TGG | 0.456949 | 6_4:-30173706 | Msa0984660:three_prime_UTR |
| GCTTGCCTTGTATTGAAGCT+TGG | 0.464508 | 6_4:-30176631 | Msa0984660:CDS |
| GTGATGAATTTGAATAGAGC+TGG | 0.477880 | 6_4:+30176980 | None:intergenic |
| ACAAAGTATAACTGCTGCTA+AGG | 0.480759 | 6_4:+30173535 | None:intergenic |
| TGTGAATGTTAAGGTTGTGA+TGG | 0.490304 | 6_4:+30176892 | None:intergenic |
| AGAAGCAATGATAAGTATGC+AGG | 0.491152 | 6_4:+30173466 | None:intergenic |
| GACATTGAGAATGCTGTGCT+TGG | 0.498630 | 6_4:-30173772 | Msa0984660:CDS |
| TTCTGAGGGAAATTGAAAGT+GGG | 0.510831 | 6_4:+30176777 | None:intergenic |
| AGGTATTTGAAGAGTGGACC+TGG | 0.511447 | 6_4:-30173847 | Msa0984660:CDS |
| TTTCTGAGGGAAATTGAAAG+TGG | 0.514101 | 6_4:+30176776 | None:intergenic |
| GGGTTGTTAATAAGAGTGAT+TGG | 0.515760 | 6_4:-30176562 | Msa0984660:CDS |
| TGAGGTTGGGAATGTGATGT+TGG | 0.518989 | 6_4:+30176862 | None:intergenic |
| TAATCAGAGTAAGGATGATA+GGG | 0.526131 | 6_4:-30176591 | Msa0984660:CDS |
| CACTCATCTTCAGGAACTAA+GGG | 0.528082 | 6_4:+30176698 | None:intergenic |
| GGTTGGGAATGTGATGTTGG+TGG | 0.536430 | 6_4:+30176865 | None:intergenic |
| ATTGAGAATGCTGTGCTTGG+AGG | 0.543070 | 6_4:-30173769 | Msa0984660:CDS |
| TGGTGCAGGTATTTGAAGAG+TGG | 0.553975 | 6_4:-30173853 | Msa0984660:intron |
| GAATGTTAAGGTTGTGATGG+TGG | 0.561334 | 6_4:+30176895 | None:intergenic |
| TGGACCTGGGAATCTTGAAA+AGG | 0.568678 | 6_4:-30173833 | Msa0984660:CDS |
| ATCTTGAAAAGGATGTAGAG+AGG | 0.581472 | 6_4:-30173822 | Msa0984660:CDS |
| CAAAGTATAACTGCTGCTAA+GGG | 0.600061 | 6_4:+30173536 | None:intergenic |
| AAGCTTGGTTGAAAAGTTTG+GGG | 0.607315 | 6_4:-30176616 | Msa0984660:CDS |
| CCTTAGTTCCTGAAGATGAG+TGG | 0.609305 | 6_4:-30176697 | Msa0984660:CDS |
| GAAGCAATGATAAGTATGCA+GGG | 0.622908 | 6_4:+30173467 | None:intergenic |
| ACCTTTGCATAAAACAATGG+TGG | 0.634401 | 6_4:+30176745 | None:intergenic |
| TGAACCTTTGCATAAAACAA+TGG | 0.658181 | 6_4:+30176742 | None:intergenic |
| CTGCTGCTAAGGGAAAACAA+AGG | 0.658338 | 6_4:+30173546 | None:intergenic |
| GGCAAGCTATGTGTATACAA+AGG | 0.667400 | 6_4:+30176647 | None:intergenic |
| GGTATTTGAAGAGTGGACCT+GGG | 0.669089 | 6_4:-30173846 | Msa0984660:CDS |
| GCTGCTAAGGGAAAACAAAG+GGG | 0.696311 | 6_4:+30173548 | None:intergenic |
| ATATGAAATAACTTCCAACA+AGG | 0.697035 | 6_4:+30173692 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATGTTTTTTTTTTGTTT+GGG | + | chr6_4:30173539-30173558 | None:intergenic | 15.0% |
| !!! | TTTGATGTTTTTTTTTTGTT+TGG | + | chr6_4:30173540-30173559 | None:intergenic | 15.0% |
| !!! | GTATTATTTGTAAGTTTTTA+AGG | - | chr6_4:30174356-30174375 | Msa0984660:intron | 15.0% |
| !! | TACTTTCAAAATATACAATA+TGG | - | chr6_4:30176751-30176770 | Msa0984660:CDS | 15.0% |
| !!! | TTTTTTTTTTGTTTGGGTTA+AGG | + | chr6_4:30173533-30173552 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTCCTTTTTATTA+AGG | - | chr6_4:30173985-30174004 | Msa0984660:intron | 20.0% |
| !! | AAAACCTTAATAAAAAGGAA+AGG | + | chr6_4:30173992-30174011 | None:intergenic | 20.0% |
| !! | CAACAAAAACCTTAATAAAA+AGG | + | chr6_4:30173997-30174016 | None:intergenic | 20.0% |
| !! | TTATGAAAAAACAGTTTATG+AGG | - | chr6_4:30174383-30174402 | Msa0984660:intron | 20.0% |
| !! | TGGTTCAAAATTGTTTAATT+GGG | - | chr6_4:30174922-30174941 | Msa0984660:intron | 20.0% |
| !! | GGATATTAAAGATGAAATTT+AGG | - | chr6_4:30174957-30174976 | Msa0984660:intron | 20.0% |
| !!! | TTCTGTTGAATTTTGTAATT+AGG | - | chr6_4:30174993-30175012 | Msa0984660:intron | 20.0% |
| !!! | TTTTCCATGTTATACTATTT+AGG | - | chr6_4:30175136-30175155 | Msa0984660:intron | 20.0% |
| !! | TTATCCTAAATAGTATAACA+TGG | + | chr6_4:30175143-30175162 | None:intergenic | 20.0% |
| !!! | TTTAACAAATTGCTATCTTT+TGG | - | chr6_4:30175217-30175236 | Msa0984660:intron | 20.0% |
| !!! | TTAACAAATTGCTATCTTTT+GGG | - | chr6_4:30175218-30175237 | Msa0984660:intron | 20.0% |
| !!! | AAGTGTTTGAATTTTACTAA+AGG | + | chr6_4:30176197-30176216 | None:intergenic | 20.0% |
| !!! | TGTATATTTTGAAAGTAGAA+AGG | + | chr6_4:30176748-30176767 | None:intergenic | 20.0% |
| !! | TTGAAACTTAATAAGTTTCA+TGG | - | chr6_4:30176899-30176918 | Msa0984660:CDS | 20.0% |
| !! | TTTGCAAAATCAAATTTGTA+AGG | + | chr6_4:30177043-30177062 | None:intergenic | 20.0% |
| !!! | AGAAATGGATTTTGTGAAAT+GGG | + | chr6_4:30173668-30173687 | None:intergenic | 25.0% |
| ! | TAAAATAAGCTAATCCAAAC+AGG | + | chr6_4:30174294-30174313 | None:intergenic | 25.0% |
| !!! | AATTACTCAATTGGTTTTTG+AGG | - | chr6_4:30174512-30174531 | Msa0984660:intron | 25.0% |
| !! | ATTTTGAACTACACAAATGT+AGG | + | chr6_4:30174817-30174836 | None:intergenic | 25.0% |
| ! | GTGGTTCAAAATTGTTTAAT+TGG | - | chr6_4:30174921-30174940 | Msa0984660:intron | 25.0% |
| !! | TTAATTGGGTTTTTGATGTT+TGG | - | chr6_4:30174936-30174955 | Msa0984660:intron | 25.0% |
| !!! | GAGTCTTATTTTTTATGTTG+CGG | - | chr6_4:30175036-30175055 | Msa0984660:intron | 25.0% |
| !! | TAACAAATTGCTATCTTTTG+GGG | - | chr6_4:30175219-30175238 | Msa0984660:intron | 25.0% |
| ! | ATAACAACAATGTGAATGTT+CGG | + | chr6_4:30175657-30175676 | None:intergenic | 25.0% |
| ! | TTTCCTAAAATCTAATACAG+TGG | + | chr6_4:30175790-30175809 | None:intergenic | 25.0% |
| !!! | GTATTAGATTTTAGGAAAAC+TGG | - | chr6_4:30175792-30175811 | Msa0984660:intron | 25.0% |
| ! | GTACAATAGCATTATATAAG+TGG | - | chr6_4:30176050-30176069 | Msa0984660:intron | 25.0% |
| ! | CCAATGAAGAAATTAAACAA+AGG | + | chr6_4:30176331-30176350 | None:intergenic | 25.0% |
| !! | CCTTTGTTTAATTTCTTCAT+TGG | - | chr6_4:30176328-30176347 | Msa0984660:intron | 25.0% |
| ! | AATATGGTTTAATTCCTTGT+TGG | - | chr6_4:30176767-30176786 | Msa0984660:CDS | 25.0% |
| ! | ATATGAAATAACTTCCAACA+AGG | + | chr6_4:30176784-30176803 | None:intergenic | 25.0% |
| ! | TCCAATTTCATTCTATTGAA+AGG | - | chr6_4:30176826-30176845 | Msa0984660:CDS | 25.0% |
| ! | TCCTTTCAATAGAATGAAAT+TGG | + | chr6_4:30176830-30176849 | None:intergenic | 25.0% |
| ! | TTCAATTATCGACAAAACTA+TGG | + | chr6_4:30176884-30176903 | None:intergenic | 25.0% |
| !! | TTTTGTTTGGGTTAAGGTTT+TGG | + | chr6_4:30173527-30173546 | None:intergenic | 30.0% |
| !! | GAGAAATGGATTTTGTGAAA+TGG | + | chr6_4:30173669-30173688 | None:intergenic | 30.0% |
| ! | CATAAAACAATGGTGGAAAT+GGG | + | chr6_4:30173724-30173743 | None:intergenic | 30.0% |
| TGAACCTTTGCATAAAACAA+TGG | + | chr6_4:30173734-30173753 | None:intergenic | 30.0% | |
| TTAATCAGAGTAAGGATGAT+AGG | - | chr6_4:30173881-30173900 | Msa0984660:intron | 30.0% | |
| TAATCAGAGTAAGGATGATA+GGG | - | chr6_4:30173882-30173901 | Msa0984660:intron | 30.0% | |
| AAAAAACTCACCTAACATAG+AGG | + | chr6_4:30173966-30173985 | None:intergenic | 30.0% | |
| !!! | TGTTTTCGCTTTTTGTGTTT+TGG | - | chr6_4:30174017-30174036 | Msa0984660:intron | 30.0% |
| !!! | GTTTTCGCTTTTTGTGTTTT+GGG | - | chr6_4:30174018-30174037 | Msa0984660:intron | 30.0% |
| !!! | TTTTTGTGTTTTGGGTTTTG+AGG | - | chr6_4:30174026-30174045 | Msa0984660:intron | 30.0% |
| ! | TTGTCACTCGTAGTAATTTT+AGG | - | chr6_4:30174145-30174164 | Msa0984660:intron | 30.0% |
| ! | TGCTAATGATATTCACCTTT+TGG | - | chr6_4:30174268-30174287 | Msa0984660:intron | 30.0% |
| TTTCATAAGCTCAAACCAAA+CGG | - | chr6_4:30174471-30174490 | Msa0984660:intron | 30.0% | |
| ! | AGTAATTTTCAACCACACAA+AGG | + | chr6_4:30174499-30174518 | None:intergenic | 30.0% |
| GTGGTTGAAAATTACTCAAT+TGG | - | chr6_4:30174503-30174522 | Msa0984660:intron | 30.0% | |
| !!! | TGGTTTTTGAGGTTGAATAT+TGG | - | chr6_4:30174523-30174542 | Msa0984660:intron | 30.0% |
| GAATATTGGAGATGGAATTT+AGG | - | chr6_4:30174537-30174556 | Msa0984660:intron | 30.0% | |
| !! | TCGAGTTTTGTAAGCATAAA+AGG | - | chr6_4:30174578-30174597 | Msa0984660:intron | 30.0% |
| GTAGTTCAAAATAGCTCAAT+TGG | - | chr6_4:30174825-30174844 | Msa0984660:intron | 30.0% | |
| !!! | AATAGCTCAATTGGTTTTTG+AGG | - | chr6_4:30174834-30174853 | Msa0984660:intron | 30.0% |
| ! | AACAATTTTGAACCACACAA+AGG | + | chr6_4:30174917-30174936 | None:intergenic | 30.0% |
| GATAAAATGCCATCAAATAG+TGG | - | chr6_4:30175158-30175177 | Msa0984660:intron | 30.0% | |
| !!! | GTTACTTTTTGACTTCGATT+TGG | - | chr6_4:30175575-30175594 | Msa0984660:intron | 30.0% |
| TGATTCACTATCAGTGATTA+TGG | - | chr6_4:30175763-30175782 | Msa0984660:intron | 30.0% | |
| TTTCAAGACATCGTAATCAA+TGG | + | chr6_4:30175859-30175878 | None:intergenic | 30.0% | |
| AACATCGAGATAGTTAAAAG+CGG | + | chr6_4:30176580-30176599 | None:intergenic | 30.0% | |
| !!! | GACATTGAAACGTTTTGATT+TGG | - | chr6_4:30176600-30176619 | Msa0984660:CDS | 30.0% |
| GAAAGGAAAATTGCTATCTA+TGG | + | chr6_4:30176731-30176750 | None:intergenic | 30.0% | |
| !! | GTTATCCTGCAAAAAGTGTT+TGG | + | chr6_4:30173456-30173475 | None:intergenic | 35.0% |
| GTGATGAATTTGAATAGAGC+TGG | + | chr6_4:30173496-30173515 | None:intergenic | 35.0% | |
| TGTGAATGTTAAGGTTGTGA+TGG | + | chr6_4:30173584-30173603 | None:intergenic | 35.0% | |
| ! | GTGAAAGATTGGATTTTTCG+TGG | + | chr6_4:30173641-30173660 | None:intergenic | 35.0% |
| !! | AAATGGGTTGTGTGAAAGAT+TGG | + | chr6_4:30173652-30173671 | None:intergenic | 35.0% |
| !!! | AAGTGGGTTTTGAAGAGAAA+TGG | + | chr6_4:30173683-30173702 | None:intergenic | 35.0% |
| ! | TTCTGAGGGAAATTGAAAGT+GGG | + | chr6_4:30173699-30173718 | None:intergenic | 35.0% |
| ! | TTTCTGAGGGAAATTGAAAG+TGG | + | chr6_4:30173700-30173719 | None:intergenic | 35.0% |
| ! | GCATAAAACAATGGTGGAAA+TGG | + | chr6_4:30173725-30173744 | None:intergenic | 35.0% |
| !! | TCCACCATTGTTTTATGCAA+AGG | - | chr6_4:30173727-30173746 | Msa0984660:three_prime_UTR | 35.0% |
| ACCTTTGCATAAAACAATGG+TGG | + | chr6_4:30173731-30173750 | None:intergenic | 35.0% | |
| TTCAACCAAGCTTCAATACA+AGG | + | chr6_4:30173850-30173869 | None:intergenic | 35.0% | |
| TGAAGCTTGGTTGAAAAGTT+TGG | - | chr6_4:30173855-30173874 | Msa0984660:intron | 35.0% | |
| GAAGCTTGGTTGAAAAGTTT+GGG | - | chr6_4:30173856-30173875 | Msa0984660:intron | 35.0% | |
| AAGCTTGGTTGAAAAGTTTG+GGG | - | chr6_4:30173857-30173876 | Msa0984660:intron | 35.0% | |
| ! | TTTGGGGTTTAATCAGAGTA+AGG | - | chr6_4:30173873-30173892 | Msa0984660:intron | 35.0% |
| ! | TAAGGATGATAGGGCTTTTT+GGG | - | chr6_4:30173891-30173910 | Msa0984660:intron | 35.0% |
| GGGTTGTTAATAAGAGTGAT+TGG | - | chr6_4:30173911-30173930 | Msa0984660:intron | 35.0% | |
| !! | TTGAGGTTTTGATGTTTGTG+TGG | - | chr6_4:30174043-30174062 | Msa0984660:intron | 35.0% |
| !! | TGAGGTTTTGATGTTTGTGT+GGG | - | chr6_4:30174044-30174063 | Msa0984660:intron | 35.0% |
| ! | TTTGATGTTTGTGTGGGTTT+TGG | - | chr6_4:30174050-30174069 | Msa0984660:intron | 35.0% |
| ! | TTGATGTTTGTGTGGGTTTT+GGG | - | chr6_4:30174051-30174070 | Msa0984660:intron | 35.0% |
| TATGTATGAATGTGCACACA+AGG | - | chr6_4:30174076-30174095 | Msa0984660:intron | 35.0% | |
| TTCATAAGCTCAAACCAAAC+GGG | - | chr6_4:30174472-30174491 | Msa0984660:intron | 35.0% | |
| TTGAGGTTGAATATTGGAGA+TGG | - | chr6_4:30174529-30174548 | Msa0984660:intron | 35.0% | |
| ACGATTATATGTTGCTGATG+CGG | - | chr6_4:30174646-30174665 | Msa0984660:intron | 35.0% | |
| ! | ATTTTAAATGTCTGTGACCG+CGG | + | chr6_4:30174678-30174697 | None:intergenic | 35.0% |
| !! | TTTGCTTGCTTTTGTGTAGT+GGG | - | chr6_4:30174731-30174750 | Msa0984660:intron | 35.0% |
| GTAGGTAGTATAACATCTTG+TGG | + | chr6_4:30174799-30174818 | None:intergenic | 35.0% | |
| ! | AATTTTGAACCACACAAAGG+TGG | + | chr6_4:30174914-30174933 | None:intergenic | 35.0% |
| GCGGAAAATTACGATTAATG+TGG | - | chr6_4:30175055-30175074 | Msa0984660:intron | 35.0% | |
| CAAATAGTGCTGTATTGTAG+TGG | - | chr6_4:30175094-30175113 | Msa0984660:intron | 35.0% | |
| TAGCTAAAGCCACTATTTGA+TGG | + | chr6_4:30175170-30175189 | None:intergenic | 35.0% | |
| CTACTTGACTTATAACCGAT+CGG | - | chr6_4:30175453-30175472 | Msa0984660:intron | 35.0% | |
| AGAATGGAGAATAAACCGAT+CGG | + | chr6_4:30175471-30175490 | None:intergenic | 35.0% | |
| ACTACTAAAGATCCTTATGC+GGG | + | chr6_4:30175520-30175539 | None:intergenic | 35.0% | |
| CACTACTAAAGATCCTTATG+CGG | + | chr6_4:30175521-30175540 | None:intergenic | 35.0% | |
| !! | TCAGTTCTAGTTCTAGTACT+CGG | + | chr6_4:30175545-30175564 | None:intergenic | 35.0% |
| ! | GGTCCACTGTATTAGATTTT+AGG | - | chr6_4:30175784-30175803 | Msa0984660:intron | 35.0% |
| GATTGAAGACATTTCTGAAC+TGG | - | chr6_4:30176028-30176047 | Msa0984660:intron | 35.0% | |
| AGCTCATCTCAACTTATGTA+AGG | + | chr6_4:30176278-30176297 | None:intergenic | 35.0% | |
| TACTGACATAAACACTTGTC+AGG | + | chr6_4:30176529-30176548 | None:intergenic | 35.0% | |
| ATCTTGAAAAGGATGTAGAG+AGG | - | chr6_4:30176651-30176670 | Msa0984660:CDS | 35.0% | |
| CAAAGTATAACTGCTGCTAA+GGG | + | chr6_4:30176940-30176959 | None:intergenic | 35.0% | |
| ACAAAGTATAACTGCTGCTA+AGG | + | chr6_4:30176941-30176960 | None:intergenic | 35.0% | |
| AGCAGCAGTTATACTTTGTT+TGG | - | chr6_4:30176942-30176961 | Msa0984660:five_prime_UTR | 35.0% | |
| ! | GCAGCAGTTATACTTTGTTT+GGG | - | chr6_4:30176943-30176962 | Msa0984660:five_prime_UTR | 35.0% |
| GAAGCAATGATAAGTATGCA+GGG | + | chr6_4:30177009-30177028 | None:intergenic | 35.0% | |
| AGAAGCAATGATAAGTATGC+AGG | + | chr6_4:30177010-30177029 | None:intergenic | 35.0% | |
| !! | TCCTGCAAAAAGTGTTTGGA+GGG | + | chr6_4:30173452-30173471 | None:intergenic | 40.0% |
| !! | ATCCTGCAAAAAGTGTTTGG+AGG | + | chr6_4:30173453-30173472 | None:intergenic | 40.0% |
| GAATGTTAAGGTTGTGATGG+TGG | + | chr6_4:30173581-30173600 | None:intergenic | 40.0% | |
| GGTGGTGTTTGTGAATGTTA+AGG | + | chr6_4:30173593-30173612 | None:intergenic | 40.0% | |
| ! | TTTTCGTGGAGATTGAGGTT+GGG | + | chr6_4:30173627-30173646 | None:intergenic | 40.0% |
| ! | TTTTTCGTGGAGATTGAGGT+TGG | + | chr6_4:30173628-30173647 | None:intergenic | 40.0% |
| ! | TGGATTTTTCGTGGAGATTG+AGG | + | chr6_4:30173632-30173651 | None:intergenic | 40.0% |
| CACTCATCTTCAGGAACTAA+GGG | + | chr6_4:30173778-30173797 | None:intergenic | 40.0% | |
| ! | TACAAAGGCTTAGTCTTCTC+AGG | + | chr6_4:30173814-30173833 | None:intergenic | 40.0% |
| GGCAAGCTATGTGTATACAA+AGG | + | chr6_4:30173829-30173848 | None:intergenic | 40.0% | |
| ! | GTAAGGATGATAGGGCTTTT+TGG | - | chr6_4:30173890-30173909 | Msa0984660:intron | 40.0% |
| ATGTCACTGACCTCTATGTT+AGG | - | chr6_4:30173953-30173972 | Msa0984660:intron | 40.0% | |
| TTACTACGAGTGACAACGTA+CGG | + | chr6_4:30174141-30174160 | None:intergenic | 40.0% | |
| ! | TATTCACCTTTTGGCCTGTT+TGG | - | chr6_4:30174277-30174296 | Msa0984660:intron | 40.0% |
| TCATAAGCTCAAACCAAACG+GGG | - | chr6_4:30174473-30174492 | Msa0984660:intron | 40.0% | |
| TGTCGCAGTTCTTGATATTG+CGG | - | chr6_4:30174617-30174636 | Msa0984660:intron | 40.0% | |
| !! | GTTTGCTTGCTTTTGTGTAG+TGG | - | chr6_4:30174730-30174749 | Msa0984660:intron | 40.0% |
| CATTTCAGGAAACGCATGTT+GGG | + | chr6_4:30175292-30175311 | None:intergenic | 40.0% | |
| TGCGTTTCCTGAAATGCTAA+TGG | - | chr6_4:30175296-30175315 | Msa0984660:intron | 40.0% | |
| CACAATGCCATTAGCATTTC+AGG | + | chr6_4:30175306-30175325 | None:intergenic | 40.0% | |
| CTGAAATGCTAATGGCATTG+TGG | - | chr6_4:30175304-30175323 | Msa0984660:intron | 40.0% | |
| !!! | CCCTATTTTTAGGAATGTGG+GGG | + | chr6_4:30175378-30175397 | None:intergenic | 40.0% |
| CCCCCACATTCCTAAAAATA+GGG | - | chr6_4:30175375-30175394 | Msa0984660:intron | 40.0% | |
| !!! | GCCCTATTTTTAGGAATGTG+GGG | + | chr6_4:30175379-30175398 | None:intergenic | 40.0% |
| !!! | GGCCCTATTTTTAGGAATGT+GGG | + | chr6_4:30175380-30175399 | None:intergenic | 40.0% |
| !! | GGATAAAGGGCCCTATTTTT+AGG | + | chr6_4:30175388-30175407 | None:intergenic | 40.0% |
| AGGTTGGGAACTTGGATAAA+GGG | + | chr6_4:30175401-30175420 | None:intergenic | 40.0% | |
| ACATACCAGTACTAGAGGTT+GGG | + | chr6_4:30175416-30175435 | None:intergenic | 40.0% | |
| !! | AGTACTGGTATGTCTCGTTA+TGG | - | chr6_4:30175423-30175442 | Msa0984660:intron | 40.0% |
| AACAAACCTCGTTGTTAGCA+CGG | + | chr6_4:30175497-30175516 | None:intergenic | 40.0% | |
| !! | CAGTTCTAGTTCTAGTACTC+GGG | + | chr6_4:30175544-30175563 | None:intergenic | 40.0% |
| ! | TTGTTGTTATTCCCTTGCAC+TGG | - | chr6_4:30175667-30175686 | Msa0984660:intron | 40.0% |
| ! | GTTAAAAGCGGTTTGGACTT+TGG | + | chr6_4:30176568-30176587 | None:intergenic | 40.0% |
| CGAGATAGTTAAAAGCGGTT+TGG | + | chr6_4:30176575-30176594 | None:intergenic | 40.0% | |
| !!! | GAAACGTTTTGATTTGGTGC+AGG | - | chr6_4:30176606-30176625 | Msa0984660:CDS | 40.0% |
| !! | ACATCCTTTTCAAGATTCCC+AGG | + | chr6_4:30176647-30176666 | None:intergenic | 40.0% |
| TGCTGCTAAGGGAAAACAAA+GGG | + | chr6_4:30176929-30176948 | None:intergenic | 40.0% | |
| !! | ACCCTCCAAACACTTTTTGC+AGG | - | chr6_4:30173448-30173467 | Msa0984660:three_prime_UTR | 45.0% |
| TGAGGTTGGGAATGTGATGT+TGG | + | chr6_4:30173614-30173633 | None:intergenic | 45.0% | |
| !! | GGTGGAAATGGGTTTTCTGA+GGG | + | chr6_4:30173713-30173732 | None:intergenic | 45.0% |
| !! | TGGTGGAAATGGGTTTTCTG+AGG | + | chr6_4:30173714-30173733 | None:intergenic | 45.0% |
| CCACTCATCTTCAGGAACTA+AGG | + | chr6_4:30173779-30173798 | None:intergenic | 45.0% | |
| CCTTAGTTCCTGAAGATGAG+TGG | - | chr6_4:30173776-30173795 | Msa0984660:CDS | 45.0% | |
| !! | TTCTGAAGCCACTCATCTTC+AGG | + | chr6_4:30173787-30173806 | None:intergenic | 45.0% |
| GCTTGCCTTGTATTGAAGCT+TGG | - | chr6_4:30173842-30173861 | Msa0984660:CDS | 45.0% | |
| GTCACGACACAAGACACATA+TGG | + | chr6_4:30174192-30174211 | None:intergenic | 45.0% | |
| TCTTGTGTCGTGACATGTGT+CGG | - | chr6_4:30174198-30174217 | Msa0984660:intron | 45.0% | |
| !! | ATCAGAGGTGTTGGTGCTAT+AGG | - | chr6_4:30174239-30174258 | Msa0984660:intron | 45.0% |
| GCTAATCCAAACAGGCCAAA+AGG | + | chr6_4:30174286-30174305 | None:intergenic | 45.0% | |
| CTATGCTATCCACCTTTGTG+TGG | - | chr6_4:30174902-30174921 | Msa0984660:intron | 45.0% | |
| GAGACAGCAGAAACCAGTTA+CGG | - | chr6_4:30175266-30175285 | Msa0984660:intron | 45.0% | |
| GCATTTCAGGAAACGCATGT+TGG | + | chr6_4:30175293-30175312 | None:intergenic | 45.0% | |
| AAGACCACATCAGCAGAGAA+GGG | + | chr6_4:30175343-30175362 | None:intergenic | 45.0% | |
| TAAGACCACATCAGCAGAGA+AGG | + | chr6_4:30175344-30175363 | None:intergenic | 45.0% | |
| GCCCCCACATTCCTAAAAAT+AGG | - | chr6_4:30175374-30175393 | Msa0984660:intron | 45.0% | |
| !!! | GGGCCCTATTTTTAGGAATG+TGG | + | chr6_4:30175381-30175400 | None:intergenic | 45.0% |
| GAGGTTGGGAACTTGGATAA+AGG | + | chr6_4:30175402-30175421 | None:intergenic | 45.0% | |
| AGTACTAGAGGTTGGGAACT+TGG | + | chr6_4:30175409-30175428 | None:intergenic | 45.0% | |
| AAGTTCCCAACCTCTAGTAC+TGG | - | chr6_4:30175408-30175427 | Msa0984660:intron | 45.0% | |
| GACATACCAGTACTAGAGGT+TGG | + | chr6_4:30175417-30175436 | None:intergenic | 45.0% | |
| ACGAGACATACCAGTACTAG+AGG | + | chr6_4:30175421-30175440 | None:intergenic | 45.0% | |
| GTTGTTAGCACGGCATAGAA+TGG | + | chr6_4:30175487-30175506 | None:intergenic | 45.0% | |
| ATGTTCGGTATAGCCCTGTT+CGG | + | chr6_4:30175642-30175661 | None:intergenic | 45.0% | |
| ATAAGAGTCCGTGTTGTGTC+TGG | - | chr6_4:30175956-30175975 | Msa0984660:intron | 45.0% | |
| TGGTGCAGGTATTTGAAGAG+TGG | - | chr6_4:30176620-30176639 | Msa0984660:CDS | 45.0% | |
| AGGTATTTGAAGAGTGGACC+TGG | - | chr6_4:30176626-30176645 | Msa0984660:CDS | 45.0% | |
| GGTATTTGAAGAGTGGACCT+GGG | - | chr6_4:30176627-30176646 | Msa0984660:CDS | 45.0% | |
| TGGACCTGGGAATCTTGAAA+AGG | - | chr6_4:30176640-30176659 | Msa0984660:CDS | 45.0% | |
| GACATTGAGAATGCTGTGCT+TGG | - | chr6_4:30176701-30176720 | Msa0984660:CDS | 45.0% | |
| ATTGAGAATGCTGTGCTTGG+AGG | - | chr6_4:30176704-30176723 | Msa0984660:CDS | 45.0% | |
| GCTGCTAAGGGAAAACAAAG+GGG | + | chr6_4:30176928-30176947 | None:intergenic | 45.0% | |
| CTGCTGCTAAGGGAAAACAA+AGG | + | chr6_4:30176930-30176949 | None:intergenic | 45.0% | |
| GGTTGGGAATGTGATGTTGG+TGG | + | chr6_4:30173611-30173630 | None:intergenic | 50.0% | |
| !! | ATGAAGCGAAGCACCGACAT+AGG | - | chr6_4:30174107-30174126 | Msa0984660:intron | 50.0% |
| !! | TACGGTGTCGTGTCCTATGT+CGG | + | chr6_4:30174123-30174142 | None:intergenic | 50.0% |
| ! | ACGCCTTTGATCAGAGGTGT+TGG | - | chr6_4:30174230-30174249 | Msa0984660:intron | 50.0% |
| GCACCAACACCTCTGATCAA+AGG | + | chr6_4:30174236-30174255 | None:intergenic | 50.0% | |
| AGACCACATCAGCAGAGAAG+GGG | + | chr6_4:30175342-30175361 | None:intergenic | 50.0% | |
| ! | GCTGATGTGGTCTTAGCAGT+TGG | - | chr6_4:30175349-30175368 | Msa0984660:intron | 50.0% |
| TCTATGCCGTGCTAACAACG+AGG | - | chr6_4:30175488-30175507 | Msa0984660:intron | 50.0% | |
| ! | ACGAGGTTTGTTCCCGCATA+AGG | - | chr6_4:30175505-30175524 | Msa0984660:intron | 50.0% |
| !! | TGACTTCGATTTGGCTTCCG+AGG | - | chr6_4:30175584-30175603 | Msa0984660:intron | 50.0% |
| CGCACTAGACTGCAACTTCA+AGG | - | chr6_4:30175610-30175629 | Msa0984660:intron | 50.0% | |
| TTCAAGGTTGTGCCCGAACA+GGG | - | chr6_4:30175626-30175645 | Msa0984660:intron | 50.0% | |
| TGTTCGGTATAGCCCTGTTC+GGG | + | chr6_4:30175641-30175660 | None:intergenic | 50.0% | |
| CCTAGCAAATGCCAGTGCAA+GGG | + | chr6_4:30175681-30175700 | None:intergenic | 50.0% | |
| ACCTAGCAAATGCCAGTGCA+AGG | + | chr6_4:30175682-30175701 | None:intergenic | 50.0% | |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | chr6_4:30174227-30174246 | None:intergenic | 55.0% |
| CCAGACACGCCTTTGATCAG+AGG | - | chr6_4:30174224-30174243 | Msa0984660:intron | 55.0% | |
| AACCAAACGGGGCCTTTGTG+TGG | - | chr6_4:30174484-30174503 | Msa0984660:intron | 55.0% | |
| AACCACACAAAGGCCCCGTT+TGG | + | chr6_4:30174489-30174508 | None:intergenic | 55.0% | |
| AACGCATGTTGGGCCGTAAC+TGG | + | chr6_4:30175282-30175301 | None:intergenic | 55.0% | |
| TTCCCCCTTCTCTGCTGATG+TGG | - | chr6_4:30175336-30175355 | Msa0984660:intron | 55.0% | |
| GACCACATCAGCAGAGAAGG+GGG | + | chr6_4:30175341-30175360 | None:intergenic | 55.0% | |
| TGCAGTCTAGTGCGCAACCT+CGG | + | chr6_4:30175604-30175623 | None:intergenic | 55.0% | |
| CTTCAAGGTTGTGCCCGAAC+AGG | - | chr6_4:30175625-30175644 | Msa0984660:intron | 55.0% | |
| ! | CCCTTGCACTGGCATTTGCT+AGG | - | chr6_4:30175678-30175697 | Msa0984660:intron | 55.0% |
| CACAGACGCCAGACACAACA+CGG | + | chr6_4:30175967-30175986 | None:intergenic | 55.0% | |
| GTTGTGTCTGGCGTCTGTGT+CGG | - | chr6_4:30175968-30175987 | Msa0984660:intron | 55.0% | |
| ! | CGTCTGTGTCGGTGTTTCAC+AGG | - | chr6_4:30175979-30175998 | Msa0984660:intron | 55.0% |
| TGCTGATGCGGCTTCAACCG+CGG | - | chr6_4:30174658-30174677 | Msa0984660:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 30173396 | 30177099 | 30173396 | ID=Msa0984660;Name=Msa0984660 |
| chr6_4 | mRNA | 30173396 | 30177099 | 30173396 | ID=Msa0984660-mRNA-1;Parent=Msa0984660;Name=Msa0984660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=178|1|1|1|1|1|2|366|168 |
| chr6_4 | exon | 30173396 | 30173867 | 30173396 | ID=Msa0984660-mRNA-1:exon:8096;Parent=Msa0984660-mRNA-1 |
| chr6_4 | exon | 30176521 | 30177099 | 30176521 | ID=Msa0984660-mRNA-1:exon:8095;Parent=Msa0984660-mRNA-1 |
| chr6_4 | five_prime_UTR | 30176922 | 30177099 | 30176922 | ID=Msa0984660-mRNA-1:five_prime_utr;Parent=Msa0984660-mRNA-1 |
| chr6_4 | CDS | 30176521 | 30176921 | 30176521 | ID=Msa0984660-mRNA-1:cds;Parent=Msa0984660-mRNA-1 |
| chr6_4 | CDS | 30173762 | 30173867 | 30173762 | ID=Msa0984660-mRNA-1:cds;Parent=Msa0984660-mRNA-1 |
| chr6_4 | three_prime_UTR | 30173396 | 30173761 | 30173396 | ID=Msa0984660-mRNA-1:three_prime_utr;Parent=Msa0984660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
