AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123960 MtrunA17_Chr1g0184811 91.409 291 5 1 1 271 39 329 0.0 546
Msa0123960 MtrunA17_Chr1g0153971 38.403 263 135 9 14 258 8 261 6.78e-46 155
Msa0123960 MtrunA17_Chr6g0488631 62.500 48 16 1 190 237 422 467 4.33e-14 71.6
Msa0123960 MtrunA17_Chr6g0488631 44.118 68 36 1 190 257 351 416 1.29e-12 67.4
Msa0123960 MtrunA17_Chr6g0488631 29.630 189 104 3 65 224 67 255 6.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123960 AT1G47720.1 34.259 216 123 5 60 257 39 253 1.10e-31 118
Msa0123960 AT4G20010.1 33.484 221 116 5 54 246 76 293 1.19e-26 107
Msa0123960 AT4G20010.1 57.692 52 20 1 190 241 310 359 1.75e-12 67.0
Msa0123960 AT4G20010.2 34.389 221 114 6 54 246 76 293 3.93e-26 105
Msa0123960 AT4G20010.2 57.692 52 20 1 190 241 310 359 1.72e-12 67.0
Msa0123960 AT5G44785.2 34.450 209 100 6 66 244 71 272 1.85e-22 96.3
Msa0123960 AT5G44785.2 58.182 55 21 1 190 244 380 432 5.09e-14 72.0
Msa0123960 AT5G44785.1 34.450 209 100 6 66 244 71 272 2.05e-22 96.3
Msa0123960 AT5G44785.1 58.182 55 21 1 190 244 378 430 5.56e-14 71.6
Msa0123960 AT1G31010.1 26.383 235 131 5 60 254 56 288 2.69e-18 84.0

Find 104 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGATTCATTTGACATTT+TGG 0.051547 1_3:-51359855 Msa0123960:CDS
TTGAATTTGGGGATGAAATT+AGG 0.122392 1_3:+51360129 None:intergenic
ATTTGTAGAACCAAAATTTA+TGG 0.137855 1_3:+51355079 None:intergenic
GGAAAATGGGAGTTTGAATT+TGG 0.165018 1_3:+51360116 None:intergenic
TCCTTGTTCCATGAAATTTC+AGG 0.224276 1_3:+51360000 None:intergenic
GGTCATCAGATTCATGTTTC+TGG 0.230684 1_3:-51359793 Msa0123960:CDS
TGCTTAAAATCAGGAGCTTT+GGG 0.240351 1_3:+51355336 None:intergenic
GAAGAGAGTGTTGTGGAAAA+TGG 0.274002 1_3:+51360102 None:intergenic
TGGGGATGAAATTAGGGTTT+TGG 0.282218 1_3:+51360136 None:intergenic
AACTGCACAAAGAAGTTTCT+AGG 0.297736 1_3:+51355112 None:intergenic
TGAATTTGGGGATGAAATTA+GGG 0.312987 1_3:+51360130 None:intergenic
GATACTGTTGATTCTCTTGA+TGG 0.323867 1_3:-51359757 Msa0123960:CDS
TTTGTAGAACCAAAATTTAT+GGG 0.327478 1_3:+51355080 None:intergenic
GAAAATGGGAGTTTGAATTT+GGG 0.332653 1_3:+51360117 None:intergenic
GTGCTTAAAATCAGGAGCTT+TGG 0.338408 1_3:+51355335 None:intergenic
GTATGATGCTGCTCCATTAT+TGG 0.343435 1_3:+51360032 None:intergenic
AGCAACTCCGTCAATTTAAT+CGG 0.355879 1_3:-51359973 Msa0123960:CDS
GAAATCAAACACCTTCCTTC+CGG 0.356017 1_3:-51359931 Msa0123960:CDS
AAATCAAACACCTTCCTTCC+GGG 0.357060 1_3:-51359930 Msa0123960:CDS
TTGTTTCGCCAAAATAAAAC+TGG 0.358485 1_3:-51360272 None:intergenic
CAAACAACAAACTTACTATA+AGG 0.360042 1_3:-51359734 Msa0123960:intron
CAGATATTGATACTTTAATC+TGG 0.366821 1_3:-51354953 Msa0123960:three_prime_UTR
CTTCCGGGAAAGTTGTTGCT+TGG 0.369233 1_3:-51359915 Msa0123960:CDS
CTATTGTCCCACCACTCCCC+TGG 0.369869 1_3:+51358892 None:intergenic
AAGAAGTTTCTAGGTTGAAA+TGG 0.372283 1_3:+51355121 None:intergenic
TCCAATTCCATCACCAATAA+TGG 0.379397 1_3:-51360045 Msa0123960:CDS
CAGGGGAGTGGTGGGACAAT+AGG 0.384072 1_3:-51358891 Msa0123960:CDS
TCCATTATTGGTGATGGAAT+TGG 0.384641 1_3:+51360044 None:intergenic
GGGTCTTATACCGGTCAAAA+TGG 0.387486 1_3:-51355225 Msa0123960:CDS
ACTCGATGATAAGGAGGAAT+TGG 0.394704 1_3:+51360239 None:intergenic
ACATTACATTGGGCAAGGTT+TGG 0.401166 1_3:+51355145 None:intergenic
CATGTCTAATATTTCCAGTT+GGG 0.406821 1_3:+51355254 None:intergenic
TGAAACGACACCAGCAGAAA+TGG 0.407180 1_3:-51360217 Msa0123960:exon
TGGTAGGATGCCCGTAGATA+TGG 0.414708 1_3:-51355205 Msa0123960:CDS
TGCTCTAACGCCATTTCTGC+TGG 0.419844 1_3:+51360207 None:intergenic
AGTCCAAGCAACAACTTTCC+CGG 0.430883 1_3:+51359912 None:intergenic
GGGACATTGTTTATAGTCTC+TGG 0.430971 1_3:-51355055 Msa0123960:three_prime_UTR
AGCAGCTGAATTTCATTGAT+AGG 0.434295 1_3:-51359611 Msa0123960:CDS
CCTTGTTCCATGAAATTTCA+GGG 0.435573 1_3:+51360001 None:intergenic
CCAGTAAAATTACAATGAAC+AGG 0.435771 1_3:+51354906 None:intergenic
GGAGAAGCTCTGTGGATTGA+TGG 0.439305 1_3:-51355303 Msa0123960:CDS
GAAATTTCTGTGGATTGGTT+TGG 0.442612 1_3:+51360080 None:intergenic
AAGTTGAAATTTCTGTGGAT+TGG 0.456639 1_3:+51360075 None:intergenic
TTGCCAACCCAGGGGAGTGG+TGG 0.459728 1_3:-51358900 Msa0123960:CDS
CTGGTTCTGTGGTGGAATTA+TGG 0.460092 1_3:-51358933 Msa0123960:CDS
GACGAAGCCGATTAAATTGA+CGG 0.460435 1_3:+51359966 None:intergenic
GTATCCTTGTGCTTAAAATC+AGG 0.463490 1_3:+51355327 None:intergenic
TCCAGTTGGGATTTGACCCA+TGG 0.465033 1_3:+51355267 None:intergenic
ACCATGGGTCAAATCCCAAC+TGG 0.466020 1_3:-51355268 Msa0123960:CDS
CAAGCTTTCTTTGCCAACCC+AGG 0.471812 1_3:-51358910 Msa0123960:CDS
TTGAAATGGAACATTACATT+GGG 0.476213 1_3:+51355135 None:intergenic
TCTTTGCCAACCCAGGGGAG+TGG 0.478438 1_3:-51358903 Msa0123960:CDS
TATTGTCCCACCACTCCCCT+GGG 0.482045 1_3:+51358893 None:intergenic
TGTCGTTTCACTCGATGATA+AGG 0.484036 1_3:+51360230 None:intergenic
ATCTGCGCTCACCATATCTA+CGG 0.486147 1_3:+51355194 None:intergenic
GGAAGGTGTTTGATTTCGAC+CGG 0.488766 1_3:+51359937 None:intergenic
AAGAGAGTGTTGTGGAAAAT+GGG 0.490916 1_3:+51360103 None:intergenic
AATTCTAAACAATGGTAGCC+AGG 0.505181 1_3:+51354994 None:intergenic
AAGCTTTCTTTGCCAACCCA+GGG 0.515795 1_3:-51358909 Msa0123960:CDS
ATGAGGATGGGGTCTTATAC+CGG 0.520447 1_3:-51355234 Msa0123960:CDS
TCATGTCTAATATTTCCAGT+TGG 0.522776 1_3:+51355253 None:intergenic
ATCAGATTCATGTTTCTGGT+CGG 0.524990 1_3:-51359789 Msa0123960:CDS
GGGAGTGGTGGGACAATAGG+AGG 0.525627 1_3:-51358888 Msa0123960:CDS
GTCCCACCACTCCCCTGGGT+TGG 0.526435 1_3:+51358897 None:intergenic
TGTTATTGTTTCAGGCAAGA+AGG 0.526995 1_3:-51358980 Msa0123960:intron
AAGGCGAGTTATGCTTCAAA+TGG 0.528529 1_3:-51358961 Msa0123960:CDS
ATGGAACATTACATTGGGCA+AGG 0.536143 1_3:+51355140 None:intergenic
GAAATATTAGACATGAGGAT+GGG 0.536442 1_3:-51355246 Msa0123960:CDS
TATGCTTCAAATGGTACGAC+TGG 0.538035 1_3:-51358952 Msa0123960:CDS
TGCTGCTCCATTATTGGTGA+TGG 0.540830 1_3:+51360038 None:intergenic
GCTTCTCAACATGTTCAGAA+AGG 0.542292 1_3:-51359814 Msa0123960:CDS
CTTATACCGGTCAAAATGGT+AGG 0.543946 1_3:-51355221 Msa0123960:CDS
GTTGAAATGGAACATTACAT+TGG 0.549390 1_3:+51355134 None:intergenic
GGAAATATTAGACATGAGGA+TGG 0.554921 1_3:-51355247 Msa0123960:CDS
AATCGGCTTCGTCGCAAACC+CGG 0.555320 1_3:-51359956 Msa0123960:CDS
TGCCAACCCAGGGGAGTGGT+GGG 0.556445 1_3:-51358899 Msa0123960:CDS
AGTTGGGATTTGACCCATGG+TGG 0.556762 1_3:+51355270 None:intergenic
CCCTGAAATTTCATGGAACA+AGG 0.559947 1_3:-51360001 Msa0123960:CDS
CGATGATAAGGAGGAATTGG+CGG 0.561104 1_3:+51360242 None:intergenic
CAACAACTTTCCCGGAAGGA+AGG 0.564641 1_3:+51359920 None:intergenic
CTTGTTCCATGAAATTTCAG+GGG 0.564810 1_3:+51360002 None:intergenic
GGATTTGACCCATGGTGGAG+TGG 0.565295 1_3:+51355275 None:intergenic
TGAACAGGTAGGATCACTCT+TGG 0.571670 1_3:+51354921 None:intergenic
TGGTAGATCCACTCCACCAT+GGG 0.571714 1_3:-51355283 Msa0123960:CDS
AAAATGGGAGTTTGAATTTG+GGG 0.572671 1_3:+51360118 None:intergenic
TCTGCGCTCACCATATCTAC+GGG 0.572725 1_3:+51355195 None:intergenic
TTGTTCCATGAAATTTCAGG+GGG 0.591210 1_3:+51360003 None:intergenic
GCTTAAAATCAGGAGCTTTG+GGG 0.595796 1_3:+51355337 None:intergenic
AAAACGCTTCGCAAATGTCG+TGG 0.597891 1_3:-51359873 Msa0123960:CDS
TAAAATTACAATGAACAGGT+AGG 0.605715 1_3:+51354910 None:intergenic
AAATATTAGACATGAGGATG+GGG 0.613312 1_3:-51355245 Msa0123960:CDS
ACTTCAAGTTGAAATTTCTG+TGG 0.615724 1_3:+51360070 None:intergenic
TTAAATTGACGGAGTTGCTG+AGG 0.615841 1_3:+51359977 None:intergenic
TGGTTTGGAAGAGAGTGTTG+TGG 0.623476 1_3:+51360095 None:intergenic
AAATGGTACGACTGGTTCTG+TGG 0.623810 1_3:-51358944 Msa0123960:CDS
AACTGGAAATATTAGACATG+AGG 0.632652 1_3:-51355251 Msa0123960:CDS
CAAGCAACAACTTTCCCGGA+AGG 0.636873 1_3:+51359916 None:intergenic
CGTTTCACTCGATGATAAGG+AGG 0.636910 1_3:+51360233 None:intergenic
ATGGTAGATCCACTCCACCA+TGG 0.638276 1_3:-51355284 Msa0123960:CDS
GAAGGTGTTTGATTTCGACC+GGG 0.654745 1_3:+51359938 None:intergenic
AGCTTTCTTTGCCAACCCAG+GGG 0.662573 1_3:-51358908 Msa0123960:CDS
AGGATACTGGAGAAGCTCTG+TGG 0.677895 1_3:-51355311 Msa0123960:CDS
TGGTACGACTGGTTCTGTGG+TGG 0.688675 1_3:-51358941 Msa0123960:CDS
GTGGGACAATAGGAGGAACA+AGG 0.691913 1_3:-51358881 Msa0123960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAAAAAAATAATTTGA+GGG + chr1_3:51356519-51356538 None:intergenic 10.0%
!! ATATGAAAAAAAATAATTTG+AGG + chr1_3:51356520-51356539 None:intergenic 10.0%
!! AACTAAATTGAATAATAAAA+TGG - chr1_3:51357063-51357082 Msa0123960:intron 10.0%
!! ACTAAATTGAATAATAAAAT+GGG - chr1_3:51357064-51357083 Msa0123960:intron 10.0%
!!! TCATTAATTCTTTAAAAAAA+TGG + chr1_3:51357104-51357123 None:intergenic 10.0%
!!! TTTTATTTATATAATGATCT+GGG + chr1_3:51358089-51358108 None:intergenic 10.0%
!!! TTTTTATTTATATAATGATC+TGG + chr1_3:51358090-51358109 None:intergenic 10.0%
!!! AAGTTTTTATTTTAAAAACT+TGG - chr1_3:51358408-51358427 Msa0123960:intron 10.0%
!!! AGTTTTTATTTTAAAAACTT+GGG - chr1_3:51358409-51358428 Msa0123960:intron 10.0%
!! TATTAAAACTTATAATTAGA+TGG - chr1_3:51359237-51359256 Msa0123960:intron 10.0%
!!! CAATTTTTTATAAAATGAAA+TGG + chr1_3:51359699-51359718 None:intergenic 10.0%
!!! TAATTTTTGCTTTGTTTTTT+TGG - chr1_3:51355407-51355426 Msa0123960:intron 15.0%
!!! TTATATATTAAGTGTACTTT+TGG - chr1_3:51355592-51355611 Msa0123960:intron 15.0%
!!! AAATTTGAACAATAATTTTG+AGG - chr1_3:51355887-51355906 Msa0123960:intron 15.0%
!!! TATCAATATGTTGATTTTTT+TGG - chr1_3:51356720-51356739 Msa0123960:intron 15.0%
!! ACAATATTCAATTTACATAT+TGG + chr1_3:51357313-51357332 None:intergenic 15.0%
!! TTTAAATAACTTATCCATTA+AGG - chr1_3:51357551-51357570 Msa0123960:intron 15.0%
!! AAGAGATATTAAAATAATCT+TGG + chr1_3:51357765-51357784 None:intergenic 15.0%
!!! GTTTTTATTTTAAAAACTTG+GGG - chr1_3:51358410-51358429 Msa0123960:intron 15.0%
!! AGAAAGATACAATAAATAAA+TGG - chr1_3:51358804-51358823 Msa0123960:intron 15.0%
!!! GAATAATTATAAGTTTTTAG+GGG + chr1_3:51359187-51359206 None:intergenic 15.0%
!!! GGAATAATTATAAGTTTTTA+GGG + chr1_3:51359188-51359207 None:intergenic 15.0%
!!! TGGAATAATTATAAGTTTTT+AGG + chr1_3:51357745-51357764 None:intergenic 15.0%
!!! TTTTTTATAAAATGAAATGG+AGG + chr1_3:51359696-51359715 None:intergenic 15.0%
!! AAAAATCTAATTCTAAACAA+TGG + chr1_3:51360131-51360150 None:intergenic 15.0%
!!! ATTGTTTAGAATTAGATTTT+TGG - chr1_3:51360130-51360149 Msa0123960:CDS 15.0%
!!! TGATTTTGAATGAATTGATT+CGG - chr1_3:51355633-51355652 Msa0123960:intron 20.0%
!! AAGTTGAATTAAATGTAAAG+TGG - chr1_3:51355660-51355679 Msa0123960:intron 20.0%
!! AGTTGAATTAAATGTAAAGT+GGG - chr1_3:51355661-51355680 Msa0123960:intron 20.0%
!! TATCTTCAAATTATCAATTC+TGG - chr1_3:51355767-51355786 Msa0123960:intron 20.0%
!!! GAATTGATTTTGACATTATT+TGG + chr1_3:51355821-51355840 None:intergenic 20.0%
!!! AAATTCTGTTCAAATTTTAC+AGG + chr1_3:51355861-51355880 None:intergenic 20.0%
!! TATCTTCAAATTATCAATTC+TGG - chr1_3:51355767-51355786 Msa0123960:intron 20.0%
!!! GAATTGATTTTGACATTATT+TGG + chr1_3:51355821-51355840 None:intergenic 20.0%
!!! AAATTCTGTTCAAATTTTAC+AGG + chr1_3:51355861-51355880 None:intergenic 20.0%
!! AAAAAAAATAATTTGAGGGT+TGG + chr1_3:51356515-51356534 None:intergenic 20.0%
!! TTCAAAATGCAAAAACAATA+GGG + chr1_3:51356547-51356566 None:intergenic 20.0%
!! TGCAAAAAAATAAAATTAGG+AGG + chr1_3:51356570-51356589 None:intergenic 20.0%
!! TGGTGCAAAAAAATAAAATT+AGG + chr1_3:51356573-51356592 None:intergenic 20.0%
!! TTTATATAGTCAAAATTGAG+TGG - chr1_3:51356758-51356777 Msa0123960:intron 20.0%
!! TCATTAGTGTAATAACAAAA+CGG + chr1_3:51356784-51356803 None:intergenic 20.0%
!! TATTACACTAATGAATTCTA+TGG - chr1_3:51356790-51356809 Msa0123960:intron 20.0%
!!! AAAAAATTCTTTTCTGAACA+AGG - chr1_3:51357890-51357909 Msa0123960:intron 20.0%
!!! TTTTATTTTTTAATGGCAGT+TGG + chr1_3:51358532-51358551 None:intergenic 20.0%
!!! AGAATTATCTGAAATTATGA+TGG - chr1_3:51358921-51358940 Msa0123960:CDS 20.0%
!! AAGAGATATTAAAACAGTAT+TGG + chr1_3:51359209-51359228 None:intergenic 20.0%
!!! ATTTTCTCATTAATGCAAAA+GGG + chr1_3:51359278-51359297 None:intergenic 20.0%
!!! AATTTTCTCATTAATGCAAA+AGG + chr1_3:51359279-51359298 None:intergenic 20.0%
!!! CTGAAAAGGTTTTTATTTTT+TGG + chr1_3:51359310-51359329 None:intergenic 20.0%
!! TTTGTAGAACCAAAATTTAT+GGG + chr1_3:51360037-51360056 None:intergenic 20.0%
!! ATTTGTAGAACCAAAATTTA+TGG + chr1_3:51360038-51360057 None:intergenic 20.0%
!!! TAAATTTTGGTTCTACAAAT+AGG - chr1_3:51360038-51360057 Msa0123960:CDS 20.0%
!!! AAATTTTGGTTCTACAAATA+GGG - chr1_3:51360039-51360058 Msa0123960:CDS 20.0%
!!! GTCAATTTCCAGTTTTATTT+TGG + chr1_3:51354853-51354872 None:intergenic 25.0%
! CAAACAACAAACTTACTATA+AGG - chr1_3:51355380-51355399 Msa0123960:intron 25.0%
!!! TGAGTTGAACAATAATTTTG+AGG - chr1_3:51355708-51355727 Msa0123960:intron 25.0%
! AGAAAAAGCTCAAAGTTATA+TGG + chr1_3:51356115-51356134 None:intergenic 25.0%
! AGAATTAACTCCAAATACAA+TGG + chr1_3:51356399-51356418 None:intergenic 25.0%
! GTTCAAAATGCAAAAACAAT+AGG + chr1_3:51356548-51356567 None:intergenic 25.0%
!!! TGATTTTTTTGGATATGCAA+TGG - chr1_3:51356731-51356750 Msa0123960:intron 25.0%
!!! ATCCATTAAGGATTAGTTTA+TGG - chr1_3:51357563-51357582 Msa0123960:intron 25.0%
!! AAATTTGCTTATCTGAACAA+GGG + chr1_3:51357604-51357623 None:intergenic 25.0%
!! AAAATTTGCTTATCTGAACA+AGG + chr1_3:51357605-51357624 None:intergenic 25.0%
! TAAAAAAGAAATGGAGGAAA+CGG + chr1_3:51358167-51358186 None:intergenic 25.0%
! TTCAGTGCATAAAAAAGAAA+TGG + chr1_3:51358176-51358195 None:intergenic 25.0%
!!! TTTTTTATGCACTGAAGTTT+AGG - chr1_3:51358180-51358199 Msa0123960:intron 25.0%
! AATTTATAGTTCTTCACGTT+TGG - chr1_3:51358293-51358312 Msa0123960:intron 25.0%
!!! TCATTTCTAGAATGGTAAAA+AGG + chr1_3:51358575-51358594 None:intergenic 25.0%
! CATAAGTGGTTTATAGATTT+GGG + chr1_3:51358623-51358642 None:intergenic 25.0%
!!! TATATGATTTGTTCTGAACA+TGG + chr1_3:51358721-51358740 None:intergenic 25.0%
! GAAAAGCTTACGATAATAAT+AGG - chr1_3:51358974-51358993 Msa0123960:intron 25.0%
! GTTAATTAGGTGTTAAGTTA+AGG - chr1_3:51359062-51359081 Msa0123960:intron 25.0%
! TATCTATTTGAAAAGACCTT+AGG - chr1_3:51359096-51359115 Msa0123960:intron 25.0%
! ATCTATTTGAAAAGACCTTA+GGG - chr1_3:51359097-51359116 Msa0123960:intron 25.0%
!!! ACTGTTTTAATATCTCTTTC+TGG - chr1_3:51359211-51359230 Msa0123960:intron 25.0%
!! TTTTCTCATTAATGCAAAAG+GGG + chr1_3:51359277-51359296 None:intergenic 25.0%
!! ATAAAAACCTTTTCAGAACA+AGG - chr1_3:51359314-51359333 Msa0123960:intron 25.0%
! TATTCATCAGTGGTTATAAA+CGG + chr1_3:51359654-51359673 None:intergenic 25.0%
! AACAAAATCTTATTCATCAG+TGG + chr1_3:51359664-51359683 None:intergenic 25.0%
! TTGAAATGGAACATTACATT+GGG + chr1_3:51359982-51360001 None:intergenic 25.0%
! CAGATATTGATACTTTAATC+TGG - chr1_3:51360161-51360180 Msa0123960:CDS 25.0%
! TAAAATTACAATGAACAGGT+AGG + chr1_3:51360207-51360226 None:intergenic 25.0%
!! TAATTTTACTGGAGAAGAAT+TGG - chr1_3:51360219-51360238 Msa0123960:exon 25.0%
TGAATTTGGGGATGAAATTA+GGG + chr1_3:51354987-51355006 None:intergenic 30.0%
TTGAATTTGGGGATGAAATT+AGG + chr1_3:51354988-51355007 None:intergenic 30.0%
AAAATGGGAGTTTGAATTTG+GGG + chr1_3:51354999-51355018 None:intergenic 30.0%
GAAAATGGGAGTTTGAATTT+GGG + chr1_3:51355000-51355019 None:intergenic 30.0%
AAGTTGAAATTTCTGTGGAT+TGG + chr1_3:51355042-51355061 None:intergenic 30.0%
!! ACTTCAAGTTGAAATTTCTG+TGG + chr1_3:51355047-51355066 None:intergenic 30.0%
! GTGGATTCATTTGACATTTT+GGG - chr1_3:51355260-51355279 Msa0123960:CDS 30.0%
AATTGAATGACAATGTGTTG+TGG - chr1_3:51355458-51355477 Msa0123960:intron 30.0%
!!! TGTGTTGTGGTTTTTTGTTT+AGG - chr1_3:51355471-51355490 Msa0123960:intron 30.0%
TTCATTATGTCTGATGACAA+TGG - chr1_3:51355565-51355584 Msa0123960:intron 30.0%
! AATGTAAAGTGGGTATTGTT+TGG - chr1_3:51355671-51355690 Msa0123960:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr1_3:51355728-51355747 Msa0123960:intron 30.0%
CTTCAAATTATCAATTCTGG+AGG - chr1_3:51355770-51355789 Msa0123960:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr1_3:51355728-51355747 Msa0123960:intron 30.0%
CTTCAAATTATCAATTCTGG+AGG - chr1_3:51355770-51355789 Msa0123960:intron 30.0%
ATTTGAACAGAATTTACCAG+TGG - chr1_3:51356045-51356064 Msa0123960:intron 30.0%
ATGTAGTATCTACCTTTATC+TGG - chr1_3:51356076-51356095 Msa0123960:intron 30.0%
TGTAGTATCTACCTTTATCT+GGG - chr1_3:51356077-51356096 Msa0123960:intron 30.0%
!! GCTTTTTCTGTTATTGTTTC+AGG - chr1_3:51356126-51356145 Msa0123960:intron 30.0%
TGTTAACATGCCATTGTATT+TGG - chr1_3:51356386-51356405 Msa0123960:intron 30.0%
GAATGAAGAGAAAGTTGTTT+GGG + chr1_3:51356608-51356627 None:intergenic 30.0%
TGAATGAAGAGAAAGTTGTT+TGG + chr1_3:51356609-51356628 None:intergenic 30.0%
TCTCTAACCTATATGCAATT+TGG - chr1_3:51356647-51356666 Msa0123960:intron 30.0%
CTCTAACCTATATGCAATTT+GGG - chr1_3:51356648-51356667 Msa0123960:intron 30.0%
TCTAACCTATATGCAATTTG+GGG - chr1_3:51356649-51356668 Msa0123960:intron 30.0%
CACAACACAAACATATCATT+AGG + chr1_3:51356676-51356695 None:intergenic 30.0%
GATACATTCTTGATACTTAG+TGG + chr1_3:51356847-51356866 None:intergenic 30.0%
AAGTATCAAGAATGTATCGT+AGG - chr1_3:51356849-51356868 Msa0123960:intron 30.0%
AGTATCAAGAATGTATCGTA+GGG - chr1_3:51356850-51356869 Msa0123960:intron 30.0%
! TCATAAACTTGCTTCAAACA+AGG + chr1_3:51356892-51356911 None:intergenic 30.0%
TGCAATCTTTATCTGATTCT+TGG - chr1_3:51356922-51356941 Msa0123960:intron 30.0%
TTTGTTTGTATGATATGTGC+TGG - chr1_3:51356966-51356985 Msa0123960:intron 30.0%
AATTAACACGAAACTCCATA+GGG - chr1_3:51357014-51357033 Msa0123960:intron 30.0%
TATACCAAGAGATATGTGTT+CGG - chr1_3:51357142-51357161 Msa0123960:intron 30.0%
! TTTAGAACATTAAACCTCGT+AGG - chr1_3:51357197-51357216 Msa0123960:intron 30.0%
AGACATTCGTAAAGTATGTT+TGG - chr1_3:51357220-51357239 Msa0123960:intron 30.0%
TCAGTGCATGAAAAATGAAA+TGG + chr1_3:51357451-51357470 None:intergenic 30.0%
! TTTTTCATGCACTGAAGTTT+AGG - chr1_3:51357456-51357475 Msa0123960:intron 30.0%
CTCCATAAACTAATCCTTAA+TGG + chr1_3:51357568-51357587 None:intergenic 30.0%
! TTAGTTCTTTATGTTTGCAG+AGG - chr1_3:51357624-51357643 Msa0123960:intron 30.0%
AAAGTTCTCATTAATGCAGA+AGG + chr1_3:51357853-51357872 None:intergenic 30.0%
! TCTTAATGGAAAAGGTACAA+AGG + chr1_3:51357953-51357972 None:intergenic 30.0%
! TAGCTGACTCAATATAATAC+AGG + chr1_3:51358043-51358062 None:intergenic 30.0%
AGTGCATAAAAAAGAAATGG+AGG + chr1_3:51358173-51358192 None:intergenic 30.0%
ATTGTGAAATAGTTGAGATG+CGG - chr1_3:51358365-51358384 Msa0123960:intron 30.0%
! GGGTGTATATGTTGTTTAAT+AGG + chr1_3:51358461-51358480 None:intergenic 30.0%
!!! ATTTTTTAATGGCAGTTGGA+TGG + chr1_3:51358528-51358547 None:intergenic 30.0%
! CCTAAGTATCATTTCTAGAA+TGG + chr1_3:51358583-51358602 None:intergenic 30.0%
! CCATTCTAGAAATGATACTT+AGG - chr1_3:51358580-51358599 Msa0123960:intron 30.0%
! GAAATGATACTTAGGCTTTT+CGG - chr1_3:51358588-51358607 Msa0123960:intron 30.0%
CCATAAGTGGTTTATAGATT+TGG + chr1_3:51358624-51358643 None:intergenic 30.0%
CCAAATCTATAAACCACTTA+TGG - chr1_3:51358621-51358640 Msa0123960:intron 30.0%
! CATTGGGTTTCAAGTATTAT+CGG - chr1_3:51358665-51358684 Msa0123960:intron 30.0%
AGCTTCAATAGAATAGCTAA+CGG - chr1_3:51359037-51359056 Msa0123960:intron 30.0%
AATTAGGTGTTAAGTTAAGG+AGG - chr1_3:51359065-51359084 Msa0123960:intron 30.0%
ATTAGGTGTTAAGTTAAGGA+GGG - chr1_3:51359066-51359085 Msa0123960:intron 30.0%
TCTATTTGAAAAGACCTTAG+GGG - chr1_3:51359098-51359117 Msa0123960:intron 30.0%
! TGTCGACTACAAAATTAGAT+GGG - chr1_3:51359128-51359147 Msa0123960:intron 30.0%
!! AAAAGAACCTTGTTCTGAAA+AGG + chr1_3:51359324-51359343 None:intergenic 30.0%
!!! GGTTCTTTTGATTTCATTCT+TGG - chr1_3:51359335-51359354 Msa0123960:intron 30.0%
TTGTCAATAAAACTGTGCTT+TGG - chr1_3:51359363-51359382 Msa0123960:intron 30.0%
AAAGCACATATCAAAAGTGA+AGG - chr1_3:51359419-51359438 Msa0123960:intron 30.0%
TAATGCAAGCTGCAAAATAT+TGG + chr1_3:51359453-51359472 None:intergenic 30.0%
TTTGCAGCTTGCATTATATT+TGG - chr1_3:51359457-51359476 Msa0123960:intron 30.0%
CTTGCATTATATTTGGTCAA+TGG - chr1_3:51359464-51359483 Msa0123960:intron 30.0%
ATCCAATATTATCGTTACCT+TGG - chr1_3:51359568-51359587 Msa0123960:intron 30.0%
TTTCTTTATCTGGATCAACA+TGG - chr1_3:51359592-51359611 Msa0123960:intron 30.0%
CATGTCTAATATTTCCAGTT+GGG + chr1_3:51359863-51359882 None:intergenic 30.0%
TCATGTCTAATATTTCCAGT+TGG + chr1_3:51359864-51359883 None:intergenic 30.0%
AACTGGAAATATTAGACATG+AGG - chr1_3:51359863-51359882 Msa0123960:CDS 30.0%
GAAATATTAGACATGAGGAT+GGG - chr1_3:51359868-51359887 Msa0123960:CDS 30.0%
AAATATTAGACATGAGGATG+GGG - chr1_3:51359869-51359888 Msa0123960:CDS 30.0%
GTTGAAATGGAACATTACAT+TGG + chr1_3:51359983-51360002 None:intergenic 30.0%
! AAGAAGTTTCTAGGTTGAAA+TGG + chr1_3:51359996-51360015 None:intergenic 30.0%
! TGCATTTTGCCCATAAATTT+TGG - chr1_3:51360025-51360044 Msa0123960:CDS 30.0%
CCAGTAAAATTACAATGAAC+AGG + chr1_3:51360211-51360230 None:intergenic 30.0%
! CCTGTTCATTGTAATTTTAC+TGG - chr1_3:51360208-51360227 Msa0123960:exon 30.0%
GGAAAATGGGAGTTTGAATT+TGG + chr1_3:51355001-51355020 None:intergenic 35.0%
!! AAGAGAGTGTTGTGGAAAAT+GGG + chr1_3:51355014-51355033 None:intergenic 35.0%
!! GAAATTTCTGTGGATTGGTT+TGG + chr1_3:51355037-51355056 None:intergenic 35.0%
TCCAATTCCATCACCAATAA+TGG - chr1_3:51355069-51355088 Msa0123960:three_prime_UTR 35.0%
!! TCCATTATTGGTGATGGAAT+TGG + chr1_3:51355073-51355092 None:intergenic 35.0%
ATGAAATTTCAGGGGGTTTA+GGG + chr1_3:51355107-51355126 None:intergenic 35.0%
TTGTTCCATGAAATTTCAGG+GGG + chr1_3:51355114-51355133 None:intergenic 35.0%
CTTGTTCCATGAAATTTCAG+GGG + chr1_3:51355115-51355134 None:intergenic 35.0%
CCTTGTTCCATGAAATTTCA+GGG + chr1_3:51355116-51355135 None:intergenic 35.0%
TCCTTGTTCCATGAAATTTC+AGG + chr1_3:51355117-51355136 None:intergenic 35.0%
AGCAACTCCGTCAATTTAAT+CGG - chr1_3:51355141-51355160 Msa0123960:three_prime_UTR 35.0%
! CGTGGATTCATTTGACATTT+TGG - chr1_3:51355259-51355278 Msa0123960:CDS 35.0%
!! ATCAGATTCATGTTTCTGGT+CGG - chr1_3:51355325-51355344 Msa0123960:CDS 35.0%
!! GATACTGTTGATTCTCTTGA+TGG - chr1_3:51355357-51355376 Msa0123960:intron 35.0%
AGCAGCTGAATTTCATTGAT+AGG - chr1_3:51355503-51355522 Msa0123960:intron 35.0%
TACTACATACTACAATCCAC+TGG + chr1_3:51356064-51356083 None:intergenic 35.0%
AAAAAGCGAAACCCAGATAA+AGG + chr1_3:51356091-51356110 None:intergenic 35.0%
TGTTATTGTTTCAGGCAAGA+AGG - chr1_3:51356134-51356153 Msa0123960:intron 35.0%
!! GAGAAAGTTGTTTGGGTTTT+TGG + chr1_3:51356601-51356620 None:intergenic 35.0%
TATGATATGTGCTGGAAACA+TGG - chr1_3:51356974-51356993 Msa0123960:intron 35.0%
TGGAGTTTCGTGTTAATTGA+AGG + chr1_3:51357012-51357031 None:intergenic 35.0%
CAATTAACACGAAACTCCAT+AGG - chr1_3:51357013-51357032 Msa0123960:intron 35.0%
CACAATCTTCATAGCAAAAG+AGG + chr1_3:51357041-51357060 None:intergenic 35.0%
GTGCATGAAAAATGAAATGG+AGG + chr1_3:51357448-51357467 None:intergenic 35.0%
! ATGCACTGAAGTTTAGGATT+AGG - chr1_3:51357462-51357481 Msa0123960:intron 35.0%
! TGAAGTTTAGGATTAGGAAG+AGG - chr1_3:51357468-51357487 Msa0123960:intron 35.0%
! GAAGTTTAGGATTAGGAAGA+GGG - chr1_3:51357469-51357488 Msa0123960:intron 35.0%
! TCTGAACAAGGTTTTTACGT+CGG - chr1_3:51357902-51357921 Msa0123960:intron 35.0%
TATTGGAATTGTTCCCTTCA+CGG + chr1_3:51358012-51358031 None:intergenic 35.0%
TAATACAGGCAGCAAGATAT+TGG + chr1_3:51358029-51358048 None:intergenic 35.0%
CCAAAGGATGAGATTTATGT+CGG - chr1_3:51358240-51358259 Msa0123960:intron 35.0%
! TGTTGTTTAATAGGACCTCA+GGG + chr1_3:51358452-51358471 None:intergenic 35.0%
! ATGTTGTTTAATAGGACCTC+AGG + chr1_3:51358453-51358472 None:intergenic 35.0%
TTGGATGGAATTTAACAGCA+GGG + chr1_3:51358513-51358532 None:intergenic 35.0%
AAGTGGTTTATAGATTTGGG+TGG + chr1_3:51358620-51358639 None:intergenic 35.0%
TACTTGAAACCCAATGCTAT+GGG + chr1_3:51358661-51358680 None:intergenic 35.0%
ATACTTGAAACCCAATGCTA+TGG + chr1_3:51358662-51358681 None:intergenic 35.0%
TGGTATCTTCATTCGTTATG+TGG + chr1_3:51358701-51358720 None:intergenic 35.0%
GAATATTCAGTGTTCGTCAA+TGG - chr1_3:51358996-51359015 Msa0123960:intron 35.0%
GCTTCAATAGAATAGCTAAC+GGG - chr1_3:51359038-51359057 Msa0123960:intron 35.0%
CTTCAATAGAATAGCTAACG+GGG - chr1_3:51359039-51359058 Msa0123960:intron 35.0%
TTCAATAGAATAGCTAACGG+GGG - chr1_3:51359040-51359059 Msa0123960:intron 35.0%
!! GTGTCGACTACAAAATTAGA+TGG - chr1_3:51359127-51359146 Msa0123960:intron 35.0%
! ATGGGTTGTTTATACCTCAA+GGG - chr1_3:51359146-51359165 Msa0123960:intron 35.0%
! ATTAATGCAAAAGGGGTACA+CGG + chr1_3:51359270-51359289 None:intergenic 35.0%
AAAACTGTGCTTTGGTACAT+TGG - chr1_3:51359371-51359390 Msa0123960:intron 35.0%
AGCCAAGGTAACGATAATAT+TGG + chr1_3:51359573-51359592 None:intergenic 35.0%
! TTACCTTGGCTTTCTTTATC+TGG - chr1_3:51359582-51359601 Msa0123960:intron 35.0%
GTTATAAACGGAGTTAGACA+TGG + chr1_3:51359642-51359661 None:intergenic 35.0%
TGCTTAAAATCAGGAGCTTT+GGG + chr1_3:51359781-51359800 None:intergenic 35.0%
GTATCCTTGTGCTTAAAATC+AGG + chr1_3:51359790-51359809 None:intergenic 35.0%
! GATTTTAAGCACAAGGATAC+TGG - chr1_3:51359790-51359809 Msa0123960:CDS 35.0%
GGAAATATTAGACATGAGGA+TGG - chr1_3:51359867-51359886 Msa0123960:CDS 35.0%
AACTGCACAAAGAAGTTTCT+AGG + chr1_3:51360005-51360024 None:intergenic 35.0%
! TCTAGTCTATTTTATCAGCC+TGG - chr1_3:51360102-51360121 Msa0123960:CDS 35.0%
AATTCTAAACAATGGTAGCC+AGG + chr1_3:51360123-51360142 None:intergenic 35.0%
ACTCGATGATAAGGAGGAAT+TGG + chr1_3:51354878-51354897 None:intergenic 40.0%
! TGTCGTTTCACTCGATGATA+AGG + chr1_3:51354887-51354906 None:intergenic 40.0%
!! GGATGAAATTAGGGTTTTGG+GGG + chr1_3:51354978-51354997 None:intergenic 40.0%
! GGGATGAAATTAGGGTTTTG+GGG + chr1_3:51354979-51354998 None:intergenic 40.0%
! GGGGATGAAATTAGGGTTTT+GGG + chr1_3:51354980-51354999 None:intergenic 40.0%
! TGGGGATGAAATTAGGGTTT+TGG + chr1_3:51354981-51355000 None:intergenic 40.0%
!! GAAGAGAGTGTTGTGGAAAA+TGG + chr1_3:51355015-51355034 None:intergenic 40.0%
GTATGATGCTGCTCCATTAT+TGG + chr1_3:51355085-51355104 None:intergenic 40.0%
CATGAAATTTCAGGGGGTTT+AGG + chr1_3:51355108-51355127 None:intergenic 40.0%
CTAAACCCCCTGAAATTTCA+TGG - chr1_3:51355106-51355125 Msa0123960:three_prime_UTR 40.0%
CCCTGAAATTTCATGGAACA+AGG - chr1_3:51355113-51355132 Msa0123960:three_prime_UTR 40.0%
TTAAATTGACGGAGTTGCTG+AGG + chr1_3:51355140-51355159 None:intergenic 40.0%
GACGAAGCCGATTAAATTGA+CGG + chr1_3:51355151-51355170 None:intergenic 40.0%
GAAATCAAACACCTTCCTTC+CGG - chr1_3:51355183-51355202 Msa0123960:CDS 40.0%
AAATCAAACACCTTCCTTCC+GGG - chr1_3:51355184-51355203 Msa0123960:CDS 40.0%
!! TTGCGAAGCGTTTTTCTTGA+CGG + chr1_3:51355235-51355254 None:intergenic 40.0%
GCTTCTCAACATGTTCAGAA+AGG - chr1_3:51355300-51355319 Msa0123960:CDS 40.0%
GGTCATCAGATTCATGTTTC+TGG - chr1_3:51355321-51355340 Msa0123960:CDS 40.0%
AAGGCGAGTTATGCTTCAAA+TGG - chr1_3:51356153-51356172 Msa0123960:intron 40.0%
TATGCTTCAAATGGTACGAC+TGG - chr1_3:51356162-51356181 Msa0123960:intron 40.0%
!! TCTACTAGCCTTTCAATCAG+TGG - chr1_3:51356457-51356476 Msa0123960:intron 40.0%
TAGGACCCCAAATTGCATAT+AGG + chr1_3:51356657-51356676 None:intergenic 40.0%
GAGGAAATCATTGAAAGCAG+TGG + chr1_3:51357429-51357448 None:intergenic 40.0%
! TTTAGGATTAGGAAGAGGGT+AGG - chr1_3:51357473-51357492 Msa0123960:intron 40.0%
CCACAGTACAAGGTATATGT+CGG - chr1_3:51357525-51357544 Msa0123960:intron 40.0%
! CAGCTGACTCTTAATGGAAA+AGG + chr1_3:51357961-51357980 None:intergenic 40.0%
! TACAGTCAGCTGACTCTTAA+TGG + chr1_3:51357967-51357986 None:intergenic 40.0%
AAAGCACATATCAACCGTGA+AGG - chr1_3:51357995-51358014 Msa0123960:intron 40.0%
AAGCACATATCAACCGTGAA+GGG - chr1_3:51357996-51358015 Msa0123960:intron 40.0%
AATGGAGGAAACGGCAATAT+TGG + chr1_3:51358158-51358177 None:intergenic 40.0%
! TGCACTGAAGTTTAGGACAA+TGG - chr1_3:51358187-51358206 Msa0123960:intron 40.0%
! CTGAAGTTTAGGACAATGGT+AGG - chr1_3:51358191-51358210 Msa0123960:intron 40.0%
TGGTAGGTTTCCCTATTACA+AGG - chr1_3:51358207-51358226 Msa0123960:intron 40.0%
AGGTTTCCCTATTACAAGGT+TGG - chr1_3:51358211-51358230 Msa0123960:intron 40.0%
GGTTTCCCTATTACAAGGTT+GGG - chr1_3:51358212-51358231 Msa0123960:intron 40.0%
CAAGTCCCAACCTTGTAATA+GGG + chr1_3:51358220-51358239 None:intergenic 40.0%
CCGACATAAATCTCATCCTT+TGG + chr1_3:51358243-51358262 None:intergenic 40.0%
TGAAATAGTTGAGATGCGGA+AGG - chr1_3:51358369-51358388 Msa0123960:intron 40.0%
GTTGTTTAATAGGACCTCAG+GGG + chr1_3:51358451-51358470 None:intergenic 40.0%
TGTCTACTGTGAAAGTAGAG+GGG + chr1_3:51358482-51358501 None:intergenic 40.0%
GTGTCTACTGTGAAAGTAGA+GGG + chr1_3:51358483-51358502 None:intergenic 40.0%
TGTGTCTACTGTGAAAGTAG+AGG + chr1_3:51358484-51358503 None:intergenic 40.0%
TGGATGGAATTTAACAGCAG+GGG + chr1_3:51358512-51358531 None:intergenic 40.0%
GTTGGATGGAATTTAACAGC+AGG + chr1_3:51358514-51358533 None:intergenic 40.0%
! CTTGTGCTCTTTTCCATAAG+TGG + chr1_3:51358637-51358656 None:intergenic 40.0%
TAGTGTTTGCATGAGACATC+TGG - chr1_3:51358847-51358866 Msa0123960:intron 40.0%
AGTGTTTGCATGAGACATCT+GGG - chr1_3:51358848-51358867 Msa0123960:intron 40.0%
! ATGAGACATCTGGGATTAAG+AGG - chr1_3:51358857-51358876 Msa0123960:intron 40.0%
AGTGTTCGTCAATGGAAAAC+TGG - chr1_3:51359004-51359023 Msa0123960:intron 40.0%
ATAGCTAACGGGGGTTAATT+AGG - chr1_3:51359049-51359068 Msa0123960:intron 40.0%
!! GATGGGTTGTTTATACCTCA+AGG - chr1_3:51359145-51359164 Msa0123960:intron 40.0%
GTACATTGGCGAATAAGAAC+TGG - chr1_3:51359385-51359404 Msa0123960:intron 40.0%
GATCCAGATAAAGAAAGCCA+AGG + chr1_3:51359588-51359607 None:intergenic 40.0%
TGCGTCTTCACAAACATTTC+TGG - chr1_3:51359738-51359757 Msa0123960:CDS 40.0%
GCTTAAAATCAGGAGCTTTG+GGG + chr1_3:51359780-51359799 None:intergenic 40.0%
GTGCTTAAAATCAGGAGCTT+TGG + chr1_3:51359782-51359801 None:intergenic 40.0%
! AGCTCCTGATTTTAAGCACA+AGG - chr1_3:51359783-51359802 Msa0123960:CDS 40.0%
CTTATACCGGTCAAAATGGT+AGG - chr1_3:51359893-51359912 Msa0123960:CDS 40.0%
ACATTACATTGGGCAAGGTT+TGG + chr1_3:51359972-51359991 None:intergenic 40.0%
ATGGAACATTACATTGGGCA+AGG + chr1_3:51359977-51359996 None:intergenic 40.0%
GGGACATTGTTTATAGTCTC+TGG - chr1_3:51360059-51360078 Msa0123960:CDS 40.0%
CGATGATAAGGAGGAATTGG+CGG + chr1_3:51354875-51354894 None:intergenic 45.0%
CGTTTCACTCGATGATAAGG+AGG + chr1_3:51354884-51354903 None:intergenic 45.0%
TGAAACGACACCAGCAGAAA+TGG - chr1_3:51354897-51354916 Msa0123960:three_prime_UTR 45.0%
!!! ATTAGGGTTTTGGGGGAAAG+TGG + chr1_3:51354971-51354990 None:intergenic 45.0%
!! TGGTTTGGAAGAGAGTGTTG+TGG + chr1_3:51355022-51355041 None:intergenic 45.0%
TGCTGCTCCATTATTGGTGA+TGG + chr1_3:51355079-51355098 None:intergenic 45.0%
!! GAAGGTGTTTGATTTCGACC+GGG + chr1_3:51355179-51355198 None:intergenic 45.0%
!! GGAAGGTGTTTGATTTCGAC+CGG + chr1_3:51355180-51355199 None:intergenic 45.0%
AGTCCAAGCAACAACTTTCC+CGG + chr1_3:51355205-51355224 None:intergenic 45.0%
AAAACGCTTCGCAAATGTCG+TGG - chr1_3:51355241-51355260 Msa0123960:CDS 45.0%
!! AAATGGTACGACTGGTTCTG+TGG - chr1_3:51356170-51356189 Msa0123960:intron 45.0%
!! CTGGTTCTGTGGTGGAATTA+TGG - chr1_3:51356181-51356200 Msa0123960:intron 45.0%
AAGCTTTCTTTGCCAACCCA+GGG - chr1_3:51356205-51356224 Msa0123960:intron 45.0%
! TAGTAGAAAGAGCGTGGTTG+AGG + chr1_3:51356444-51356463 None:intergenic 45.0%
AAAGGCTAGTAGAAAGAGCG+TGG + chr1_3:51356450-51356469 None:intergenic 45.0%
!! ACTAGCCTTTCAATCAGTGG+CGG - chr1_3:51356460-51356479 Msa0123960:intron 45.0%
!!! TGTTTGGGTTTTTGGCTAGC+TGG + chr1_3:51356593-51356612 None:intergenic 45.0%
CATAGCAAAAGAGGTCCCTA+TGG + chr1_3:51357032-51357051 None:intergenic 45.0%
GTTGCCGAACACATATCTCT+TGG + chr1_3:51357149-51357168 None:intergenic 45.0%
CTTTACGAATGTCTCCTACG+AGG + chr1_3:51357214-51357233 None:intergenic 45.0%
AAGTCCTAAGCCTAGAAACC+GGG + chr1_3:51357502-51357521 None:intergenic 45.0%
CAAGTCCTAAGCCTAGAAAC+CGG + chr1_3:51357503-51357522 None:intergenic 45.0%
CCGACATATACCTTGTACTG+TGG + chr1_3:51357528-51357547 None:intergenic 45.0%
GAGTATGCAGTATGCCAACA+GGG + chr1_3:51357831-51357850 None:intergenic 45.0%
GCAAGTCCCAACCTTGTAAT+AGG + chr1_3:51358221-51358240 None:intergenic 45.0%
!! AATTACACTGACTTCCCCTG+AGG - chr1_3:51358434-51358453 Msa0123960:intron 45.0%
GTCTACTGTGAAAGTAGAGG+GGG + chr1_3:51358481-51358500 None:intergenic 45.0%
AGCACAAGACCCATAGCATT+GGG - chr1_3:51358649-51358668 Msa0123960:intron 45.0%
AGGTGTTAAGTTAAGGAGGG+AGG - chr1_3:51359069-51359088 Msa0123960:intron 45.0%
GGTTGTTTATACCTCAAGGG+AGG - chr1_3:51359149-51359168 Msa0123960:intron 45.0%
AATTACACTGACCTCCCTTG+AGG + chr1_3:51359163-51359182 None:intergenic 45.0%
!! CATTTCTGGTAACTTCGCAG+AGG - chr1_3:51359752-51359771 Msa0123960:CDS 45.0%
! ATGAGGATGGGGTCTTATAC+CGG - chr1_3:51359880-51359899 Msa0123960:CDS 45.0%
! GGGTCTTATACCGGTCAAAA+TGG - chr1_3:51359889-51359908 Msa0123960:CDS 45.0%
ATCTGCGCTCACCATATCTA+CGG + chr1_3:51359923-51359942 None:intergenic 45.0%
TGAACAGGTAGGATCACTCT+TGG + chr1_3:51360196-51360215 None:intergenic 45.0%
!! TTGAATATAATATTATTATA+AGG - chr1_3:51357285-51357304 Msa0123960:intron 5.0%
!!! TTTTTGTTTTTATTTTTTAA+TGG + chr1_3:51358539-51358558 None:intergenic 5.0%
TGCTCTAACGCCATTTCTGC+TGG + chr1_3:51354910-51354929 None:intergenic 50.0%
CAACAACTTTCCCGGAAGGA+AGG + chr1_3:51355197-51355216 None:intergenic 50.0%
CAAGCAACAACTTTCCCGGA+AGG + chr1_3:51355201-51355220 None:intergenic 50.0%
CTTCCGGGAAAGTTGTTGCT+TGG - chr1_3:51355199-51355218 Msa0123960:CDS 50.0%
TCTTGATCATGTGACCGCAC+CGG + chr1_3:51355538-51355557 None:intergenic 50.0%
CAAGCTTTCTTTGCCAACCC+AGG - chr1_3:51356204-51356223 Msa0123960:intron 50.0%
AGCTTTCTTTGCCAACCCAG+GGG - chr1_3:51356206-51356225 Msa0123960:intron 50.0%
GTGGGACAATAGGAGGAACA+AGG - chr1_3:51356233-51356252 Msa0123960:intron 50.0%
AAATCGAACCCCCTGATCCA+AGG - chr1_3:51357392-51357411 Msa0123960:intron 50.0%
AATCGAACCCCCTGATCCAA+GGG - chr1_3:51357393-51357412 Msa0123960:intron 50.0%
CAGTATGCCAACAGGGTTGA+CGG + chr1_3:51357824-51357843 None:intergenic 50.0%
GGAGTATGCAGTATGCCAAC+AGG + chr1_3:51357832-51357851 None:intergenic 50.0%
ACAAGGTTGGGACTTGCCAA+AGG - chr1_3:51358224-51358243 Msa0123960:intron 50.0%
GAGCACAAGACCCATAGCAT+TGG - chr1_3:51358648-51358667 Msa0123960:intron 50.0%
GTCGACACTAATCTCCCCTA+AGG + chr1_3:51359115-51359134 None:intergenic 50.0%
AGGATACTGGAGAAGCTCTG+TGG - chr1_3:51359803-51359822 Msa0123960:CDS 50.0%
! GGAGAAGCTCTGTGGATTGA+TGG - chr1_3:51359811-51359830 Msa0123960:CDS 50.0%
ATGGTAGATCCACTCCACCA+TGG - chr1_3:51359830-51359849 Msa0123960:CDS 50.0%
TGGTAGATCCACTCCACCAT+GGG - chr1_3:51359831-51359850 Msa0123960:CDS 50.0%
AGTTGGGATTTGACCCATGG+TGG + chr1_3:51359847-51359866 None:intergenic 50.0%
ACCATGGGTCAAATCCCAAC+TGG - chr1_3:51359846-51359865 Msa0123960:CDS 50.0%
TCCAGTTGGGATTTGACCCA+TGG + chr1_3:51359850-51359869 None:intergenic 50.0%
!! GGGCATCCTACCATTTTGAC+CGG + chr1_3:51359902-51359921 None:intergenic 50.0%
TGGTAGGATGCCCGTAGATA+TGG - chr1_3:51359909-51359928 Msa0123960:CDS 50.0%
TCTGCGCTCACCATATCTAC+GGG + chr1_3:51359922-51359941 None:intergenic 50.0%
!!! GGTTTTGGGGGAAAGTGGTG+AGG + chr1_3:51354966-51354985 None:intergenic 55.0%
! AATCGGCTTCGTCGCAAACC+CGG - chr1_3:51355158-51355177 Msa0123960:exon 55.0%
CATTGATAGGAGTGACGCGC+CGG - chr1_3:51355516-51355535 Msa0123960:intron 55.0%
!! TGGTACGACTGGTTCTGTGG+TGG - chr1_3:51356173-51356192 Msa0123960:intron 55.0%
TATTGTCCCACCACTCCCCT+GGG + chr1_3:51356224-51356243 None:intergenic 55.0%
! TGGCTCCGCCACTGATTGAA+AGG + chr1_3:51356468-51356487 None:intergenic 55.0%
TGCATCCCCTCACCACAATG+TGG + chr1_3:51356488-51356507 None:intergenic 55.0%
TTGAAAGCAGTGGCGTTGCC+AGG + chr1_3:51357419-51357438 None:intergenic 55.0%
TAGGAAGAGGGTAGGTTGCC+CGG - chr1_3:51357481-51357500 Msa0123960:intron 55.0%
! GTTGCCCGGTTTCTAGGCTT+AGG - chr1_3:51357495-51357514 Msa0123960:intron 55.0%
AGGACTTGCGCCACAGTACA+AGG - chr1_3:51357515-51357534 Msa0123960:intron 55.0%
CAAACAGCCGTCAACCCTGT+TGG - chr1_3:51357814-51357833 Msa0123960:intron 55.0%
! GGATTTGACCCATGGTGGAG+TGG + chr1_3:51359842-51359861 None:intergenic 55.0%
TCTTTGCCAACCCAGGGGAG+TGG - chr1_3:51356211-51356230 Msa0123960:intron 60.0%
CTATTGTCCCACCACTCCCC+TGG + chr1_3:51356225-51356244 None:intergenic 60.0%
! CAGGGGAGTGGTGGGACAAT+AGG - chr1_3:51356223-51356242 Msa0123960:intron 60.0%
! GGGAGTGGTGGGACAATAGG+AGG - chr1_3:51356226-51356245 Msa0123960:intron 60.0%
! TCAGTGGCGGAGCCACATTG+TGG - chr1_3:51356473-51356492 Msa0123960:intron 60.0%
GCGGAGCCACATTGTGGTGA+GGG - chr1_3:51356479-51356498 Msa0123960:intron 60.0%
CGGAGCCACATTGTGGTGAG+GGG - chr1_3:51356480-51356499 Msa0123960:intron 60.0%
TTGCCAGGCCCTTGGATCAG+GGG + chr1_3:51357404-51357423 None:intergenic 60.0%
GTTGCCAGGCCCTTGGATCA+GGG + chr1_3:51357405-51357424 None:intergenic 60.0%
GGGTAGGTTGCCCGGTTTCT+AGG - chr1_3:51357489-51357508 Msa0123960:intron 60.0%
! ATAGGAGTGACGCGCCGGTG+CGG - chr1_3:51355521-51355540 Msa0123960:intron 65.0%
TTGCCAACCCAGGGGAGTGG+TGG - chr1_3:51356214-51356233 Msa0123960:intron 65.0%
TGCCAACCCAGGGGAGTGGT+GGG - chr1_3:51356215-51356234 Msa0123960:intron 65.0%
GGCGGAGCCACATTGTGGTG+AGG - chr1_3:51356478-51356497 Msa0123960:intron 65.0%
AACCCCCTGATCCAAGGGCC+TGG - chr1_3:51357398-51357417 Msa0123960:intron 65.0%
TGCCAGGCCCTTGGATCAGG+GGG + chr1_3:51357403-51357422 None:intergenic 65.0%
CGTTGCCAGGCCCTTGGATC+AGG + chr1_3:51357406-51357425 None:intergenic 65.0%
GTCCCACCACTCCCCTGGGT+TGG + chr1_3:51356220-51356239 None:intergenic 70.0%
CAGTGGCGTTGCCAGGCCCT+TGG + chr1_3:51357412-51357431 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51354849 51360287 51354849 ID=Msa0123960;Name=Msa0123960
chr1_3 mRNA 51354849 51360287 51354849 ID=Msa0123960-mRNA-1;Parent=Msa0123960;Name=Msa0123960-mRNA-1;_AED=0.21;_eAED=0.21;_QI=67|0.66|0.75|1|1|1|4|327|271
chr1_3 exon 51354849 51355364 51354849 ID=Msa0123960-mRNA-1:exon:15712;Parent=Msa0123960-mRNA-1
chr1_3 exon 51358882 51358988 51358882 ID=Msa0123960-mRNA-1:exon:15711;Parent=Msa0123960-mRNA-1
chr1_3 exon 51359610 51359643 51359610 ID=Msa0123960-mRNA-1:exon:15710;Parent=Msa0123960-mRNA-1
chr1_3 exon 51359735 51360287 51359735 ID=Msa0123960-mRNA-1:exon:15709;Parent=Msa0123960-mRNA-1
chr1_3 five_prime_UTR 51360221 51360287 51360221 ID=Msa0123960-mRNA-1:five_prime_utr;Parent=Msa0123960-mRNA-1
chr1_3 CDS 51359735 51360220 51359735 ID=Msa0123960-mRNA-1:cds;Parent=Msa0123960-mRNA-1
chr1_3 CDS 51359610 51359643 51359610 ID=Msa0123960-mRNA-1:cds;Parent=Msa0123960-mRNA-1
chr1_3 CDS 51358882 51358988 51358882 ID=Msa0123960-mRNA-1:cds;Parent=Msa0123960-mRNA-1
chr1_3 CDS 51355176 51355364 51355176 ID=Msa0123960-mRNA-1:cds;Parent=Msa0123960-mRNA-1
chr1_3 three_prime_UTR 51354849 51355175 51354849 ID=Msa0123960-mRNA-1:three_prime_utr;Parent=Msa0123960-mRNA-1
Gene Sequence

>Msa0123960

ATGGCGTTAGAGCAAGCAGTTTCACTTTCATCAACTCGCTTCAGAAACCTCACCACTTTCCCCCAAAACCCTAATTTCATCCCCAAATTCAAACTCCCATTTTCCACAACACTCTCTTCCAAACCAATCCACAGAAATTTCAACTTGAAGTGCTCCAATTCCATCACCAATAATGGAGCAGCATCATACCCTAAACCCCCTGAAATTTCATGGAACAAGGACCTCAGCAACTCCGTCAATTTAATCGGCTTCGTCGCAAACCCGGTCGAAATCAAACACCTTCCTTCCGGGAAAGTTGTTGCTTGGACTCGTCTCTCCGTCAAGAAAAACGCTTCGCAAATGTCGTGGATTCATTTGACATTTTGGGATGAACTTGCTCATGTTGCTTCTCAACATGTTCAGAAAGGTCATCAGATTCATGTTTCTGGTCGGCTTGTTACTGATACTGTTGATTCTCTTGATGGCAAACAACAAACTTACTATAAGGTTGTTGCTCAGCAGCTGAATTTCATTGATAGGAGCAAGAAGGCGAGTTATGCTTCAAATGGTACGACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCCAACCCAGGGGAGTGGTGGGACAATAGGAGGAACAAGAGGAACCCCAAAGCTCCTGATTTTAAGCACAAGGATACTGGAGAAGCTCTGTGGATTGATGGTAGATCCACTCCACCATGGGTCAAATCCCAACTGGAAATATTAGACATGAGGATGGGGTCTTATACCGGTCAAAATGGTAGGATGCCCGTAGATATGGTGAGCGCAGATGAAATGTTGTCTTTCTAA

Protein sequence

>Msa0123960

MALEQAVSLSSTRFRNLTTFPQNPNFIPKFKLPFSTTLSSKPIHRNFNLKCSNSITNNGAASYPKPPEISWNKDLSNSVNLIGFVANPVEIKHLPSGKVVAWTRLSVKKNASQMSWIHLTFWDELAHVASQHVQKGHQIHVSGRLVTDTVDSLDGKQQTYYKVVAQQLNFIDRSKKASYASNGTTGSVVELWQAFFANPGEWWDNRRNKRNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEMLSF*