AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033670 MtrunA17_Chr1g0184811 90.722 291 7 1 1 271 39 329 0.0 543
Msa0033670 MtrunA17_Chr1g0153971 37.405 262 139 8 14 258 8 261 3.39e-45 153
Msa0033670 MtrunA17_Chr6g0488631 62.500 48 16 1 190 237 422 467 4.33e-14 71.6
Msa0033670 MtrunA17_Chr6g0488631 44.118 68 36 1 190 257 351 416 1.42e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033670 AT1G47720.1 34.259 216 123 5 60 257 39 253 1.10e-31 118
Msa0033670 AT4G20010.1 33.032 221 117 5 54 246 76 293 2.76e-26 106
Msa0033670 AT4G20010.1 57.692 52 20 1 190 241 310 359 1.75e-12 67.0
Msa0033670 AT4G20010.2 34.389 221 114 6 54 246 76 293 4.63e-26 105
Msa0033670 AT4G20010.2 57.692 52 20 1 190 241 310 359 1.68e-12 67.0
Msa0033670 AT5G44785.2 34.135 208 102 5 66 244 71 272 3.28e-22 95.5
Msa0033670 AT5G44785.2 58.182 55 21 1 190 244 380 432 4.99e-14 72.0
Msa0033670 AT5G44785.1 34.135 208 102 5 66 244 71 272 3.61e-22 95.5
Msa0033670 AT5G44785.1 58.182 55 21 1 190 244 378 430 5.36e-14 71.6
Msa0033670 AT1G31010.1 26.383 235 131 6 60 254 56 288 2.07e-18 84.3

Find 105 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGATTCATTTGACATTT+TGG 0.051547 1_1:-61295337 Msa0033670:CDS
TTGAATTTGGGGATGAAATT+AGG 0.122392 1_1:+61295611 None:intergenic
ATTTGTAGAACCAAAATTTA+TGG 0.137855 1_1:+61290791 None:intergenic
GGAAACTGGGAGTTTGAATT+TGG 0.179246 1_1:+61295598 None:intergenic
TCCTTGTTCCATGAAATTTC+AGG 0.224276 1_1:+61295482 None:intergenic
GAGAAGAATTGGTGAAAATT+TGG 0.236450 1_1:-61290596 Msa0033670:three_prime_UTR
TGCTTAAAATCAGGAGCTTT+GGG 0.240351 1_1:+61291048 None:intergenic
TGGGGATGAAATTAGGGTTT+TGG 0.282218 1_1:+61295618 None:intergenic
GATACTATTGATTCTCTTGA+TGG 0.293460 1_1:-61295239 Msa0033670:CDS
AACTGCACAAAGAAGTTTCT+AGG 0.297736 1_1:+61290824 None:intergenic
GAAGAGAGTGTTGTGGAAAC+TGG 0.307345 1_1:+61295584 None:intergenic
TGAATTTGGGGATGAAATTA+GGG 0.312987 1_1:+61295612 None:intergenic
GGTCATCAGATTCATGTTTC+CGG 0.314142 1_1:-61295275 Msa0033670:CDS
TTTGTAGAACCAAAATTTAT+GGG 0.327478 1_1:+61290792 None:intergenic
GTGCTTAAAATCAGGAGCTT+TGG 0.338408 1_1:+61291047 None:intergenic
GTATGATGCTGCTCCATTAT+TGG 0.343435 1_1:+61295514 None:intergenic
GAAACTGGGAGTTTGAATTT+GGG 0.346880 1_1:+61295599 None:intergenic
AGCAACTCCGTCAATTTAAT+CGG 0.355879 1_1:-61295455 Msa0033670:CDS
GAAATCAAACACCTTCCTTC+CGG 0.356017 1_1:-61295413 Msa0033670:CDS
AAATCAAACACCTTCCTTCC+GGG 0.357060 1_1:-61295412 Msa0033670:CDS
CAAACAACAAACTTACTATA+AGG 0.360042 1_1:-61295216 Msa0033670:intron
CAGATATTGATACTTTAATC+TGG 0.366821 1_1:-61290665 Msa0033670:three_prime_UTR
CTTCCGGGAAAGTTGTTGCT+TGG 0.369233 1_1:-61295397 Msa0033670:CDS
CTATTGTCCCACCACTCCCC+TGG 0.369869 1_1:+61294564 None:intergenic
AAGAAGTTTCTAGGTTGAAA+TGG 0.372283 1_1:+61290833 None:intergenic
TGAAACGACAACAGCAGAAA+TGG 0.376407 1_1:-61295699 Msa0033670:exon
TCCAATTCCATCACCAATAA+TGG 0.379397 1_1:-61295527 Msa0033670:CDS
CAGGGGAGTGGTGGGACAAT+AGG 0.384072 1_1:-61294563 Msa0033670:CDS
TCCATTATTGGTGATGGAAT+TGG 0.384641 1_1:+61295526 None:intergenic
GGGTCTTATACCGGTCAAAA+TGG 0.387486 1_1:-61290937 Msa0033670:CDS
TGTCGTTTCACTCGATGATA+AGG 0.400190 1_1:+61295712 None:intergenic
ACATTACATTGGGCAAGGTT+TGG 0.401166 1_1:+61290857 None:intergenic
GGAACATTGTTTATAGTCTC+TGG 0.405710 1_1:-61290767 Msa0033670:three_prime_UTR
CATGTCTAATATTTCCAGTT+GGG 0.406821 1_1:+61290966 None:intergenic
GTCGTTTCACTCGATGATAA+GGG 0.407257 1_1:+61295713 None:intergenic
TGGTAGGATGCCCGTAGATA+TGG 0.414708 1_1:-61290917 Msa0033670:CDS
AGTCCAAGCAACAACTTTCC+CGG 0.430883 1_1:+61295394 None:intergenic
AGCAGCTGAATTTCATTGAT+AGG 0.434295 1_1:-61295093 Msa0033670:CDS
CCTTGTTCCATGAAATTTCA+GGG 0.435573 1_1:+61295483 None:intergenic
GGAGAAGCTCTGTGGATTGA+TGG 0.439305 1_1:-61291015 Msa0033670:CDS
GAAATTTCTGTGGATTGGTT+TGG 0.442612 1_1:+61295562 None:intergenic
CTGGTTCTGTGGTGGAATTA+TGG 0.451490 1_1:-61294605 Msa0033670:CDS
AAGTTGAAATTTCTGTGGAT+TGG 0.456639 1_1:+61295557 None:intergenic
TTGCCAACCCAGGGGAGTGG+TGG 0.459728 1_1:-61294572 Msa0033670:CDS
GACGAAGCCGATTAAATTGA+CGG 0.460435 1_1:+61295448 None:intergenic
GTATCCTTGTGCTTAAAATC+AGG 0.463490 1_1:+61291039 None:intergenic
CCAGCAAAATTACAATGAAC+GGG 0.464652 1_1:+61290618 None:intergenic
TCCAGTTGGGATTTGACCCA+TGG 0.465033 1_1:+61290979 None:intergenic
ACCATGGGTCAAATCCCAAC+TGG 0.466020 1_1:-61290980 Msa0033670:CDS
CAAGCTTTCTTTGCCAACCC+AGG 0.471812 1_1:-61294582 Msa0033670:CDS
TTGAAATGGAACATTACATT+GGG 0.476213 1_1:+61290847 None:intergenic
TCTTTGCCAACCCAGGGGAG+TGG 0.478438 1_1:-61294575 Msa0033670:CDS
TATTGTCCCACCACTCCCCT+GGG 0.482045 1_1:+61294565 None:intergenic
TCCAGCAAAATTACAATGAA+CGG 0.484357 1_1:+61290617 None:intergenic
ATCTGCGCTCACCATATCTA+CGG 0.486147 1_1:+61290906 None:intergenic
GGAAGGTGTTTGATTTCGAC+CGG 0.488766 1_1:+61295419 None:intergenic
AATTCTAAACAATGGTAGCC+AGG 0.505181 1_1:+61290706 None:intergenic
TATGCTTCAAATGGTATGAC+TGG 0.505920 1_1:-61294624 Msa0033670:CDS
AAGCTTTCTTTGCCAACCCA+GGG 0.515795 1_1:-61294581 Msa0033670:CDS
AAGGTGAGTTATGCTTCAAA+TGG 0.517186 1_1:-61294633 Msa0033670:CDS
TGTTATTGTTTCAGGCAAGA+AGG 0.517890 1_1:-61294652 Msa0033670:intron
ATGAGGATGGGGTCTTATAC+CGG 0.520447 1_1:-61290946 Msa0033670:CDS
TCATGTCTAATATTTCCAGT+TGG 0.522776 1_1:+61290965 None:intergenic
GGGAGTGGTGGGACAATAGG+AGG 0.525627 1_1:-61294560 Msa0033670:CDS
GTCCCACCACTCCCCTGGGT+TGG 0.526435 1_1:+61294569 None:intergenic
AAGAGAGTGTTGTGGAAACT+GGG 0.531350 1_1:+61295585 None:intergenic
ATGGAACATTACATTGGGCA+AGG 0.536143 1_1:+61290852 None:intergenic
GAAATATTAGACATGAGGAT+GGG 0.536442 1_1:-61290958 Msa0033670:CDS
TGCTGCTCCATTATTGGTGA+TGG 0.540830 1_1:+61295520 None:intergenic
GCTTCTCAACATGTTCAGAA+AGG 0.542292 1_1:-61295296 Msa0033670:CDS
CTTATACCGGTCAAAATGGT+AGG 0.543946 1_1:-61290933 Msa0033670:CDS
AAACTGGGAGTTTGAATTTG+GGG 0.544519 1_1:+61295600 None:intergenic
GTTGAAATGGAACATTACAT+TGG 0.549390 1_1:+61290846 None:intergenic
GGAAATATTAGACATGAGGA+TGG 0.554921 1_1:-61290959 Msa0033670:CDS
AATCGGCTTCGTCGCAAACC+CGG 0.555320 1_1:-61295438 Msa0033670:CDS
TGCCAACCCAGGGGAGTGGT+GGG 0.556445 1_1:-61294571 Msa0033670:CDS
AGTTGGGATTTGACCCATGG+TGG 0.556762 1_1:+61290982 None:intergenic
CCCTGAAATTTCATGGAACA+AGG 0.559947 1_1:-61295483 Msa0033670:CDS
CAACAACTTTCCCGGAAGGA+AGG 0.564641 1_1:+61295402 None:intergenic
CTTGTTCCATGAAATTTCAG+GGG 0.564810 1_1:+61295484 None:intergenic
GGATTTGACCCATGGTGGAG+TGG 0.565295 1_1:+61290987 None:intergenic
AAATGGTATGACTGGTTCTG+TGG 0.565847 1_1:-61294616 Msa0033670:CDS
TGGTAGATCCACTCCACCAT+GGG 0.571714 1_1:-61290995 Msa0033670:CDS
TCTGCGCTCACCATATCTAC+GGG 0.572725 1_1:+61290907 None:intergenic
TGAACGGGTAGGATCACTCT+TGG 0.576354 1_1:+61290633 None:intergenic
ATCAGATTCATGTTTCCGGT+CGG 0.580777 1_1:-61295271 Msa0033670:CDS
TCGTTTCACTCGATGATAAG+GGG 0.584716 1_1:+61295714 None:intergenic
TTGTTCCATGAAATTTCAGG+GGG 0.591210 1_1:+61295485 None:intergenic
GCTTAAAATCAGGAGCTTTG+GGG 0.595796 1_1:+61291049 None:intergenic
AAAACGCTTCGCAAATGTCG+TGG 0.597891 1_1:-61295355 Msa0033670:CDS
CAAAATTACAATGAACGGGT+AGG 0.598641 1_1:+61290622 None:intergenic
AGTATCAGTAACAAGCCGAC+CGG 0.612026 1_1:+61295256 None:intergenic
AAATATTAGACATGAGGATG+GGG 0.613312 1_1:-61290957 Msa0033670:CDS
ACTTCAAGTTGAAATTTCTG+TGG 0.615724 1_1:+61295552 None:intergenic
TTAAATTGACGGAGTTGCTG+AGG 0.615841 1_1:+61295459 None:intergenic
TGGTTTGGAAGAGAGTGTTG+TGG 0.623476 1_1:+61295577 None:intergenic
AACTGGAAATATTAGACATG+AGG 0.632652 1_1:-61290963 Msa0033670:CDS
CAAGCAACAACTTTCCCGGA+AGG 0.636873 1_1:+61295398 None:intergenic
ATGGTAGATCCACTCCACCA+TGG 0.638276 1_1:-61290996 Msa0033670:CDS
TGGTATGACTGGTTCTGTGG+TGG 0.639075 1_1:-61294613 Msa0033670:CDS
CGTTTCACTCGATGATAAGG+GGG 0.647632 1_1:+61295715 None:intergenic
GAAGGTGTTTGATTTCGACC+GGG 0.654745 1_1:+61295420 None:intergenic
AGCTTTCTTTGCCAACCCAG+GGG 0.662573 1_1:-61294580 Msa0033670:CDS
AGGATACTGGAGAAGCTCTG+TGG 0.677895 1_1:-61291023 Msa0033670:CDS
GTGGGACAATAGGAGGAACA+AGG 0.691913 1_1:-61294553 Msa0033670:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAAAAAAATAATTTGA+GGG + chr1_1:61292017-61292036 None:intergenic 10.0%
!! ATATGAAAAAAAATAATTTG+AGG + chr1_1:61292018-61292037 None:intergenic 10.0%
!! AACTAAATTGAATAATAAAA+TGG - chr1_1:61292562-61292581 Msa0033670:intron 10.0%
!! ACTAAATTGAATAATAAAAT+GGG - chr1_1:61292563-61292582 Msa0033670:intron 10.0%
!!! TCATTAATTCTTTAAAAAAA+TGG + chr1_1:61292603-61292622 None:intergenic 10.0%
!!! TTTTATTTATATAATGATCT+GGG + chr1_1:61293558-61293577 None:intergenic 10.0%
!!! TTTTTATTTATATAATGATC+TGG + chr1_1:61293559-61293578 None:intergenic 10.0%
!! TCATATATACAATAAATAAA+TGG - chr1_1:61294203-61294222 Msa0033670:intron 10.0%
!! TATTAAAACTTATAATTAGA+TGG - chr1_1:61294695-61294714 Msa0033670:intron 10.0%
!!! CAATTTTTTATAAAATGAAA+TGG + chr1_1:61295157-61295176 None:intergenic 10.0%
!!! TAATTTTTGCTTTGTTTTTT+TGG - chr1_1:61291095-61291114 Msa0033670:intron 15.0%
!!! TTATATATTAAGTGTACTTT+TGG - chr1_1:61291280-61291299 Msa0033670:intron 15.0%
!!! TATCAATATGTTGATTTTTT+TGG - chr1_1:61292219-61292238 Msa0033670:intron 15.0%
!! ACAATATTCAATTTACATAT+TGG + chr1_1:61292812-61292831 None:intergenic 15.0%
!! TTTAAATAACTTATCCATTA+AGG - chr1_1:61293050-61293069 Msa0033670:intron 15.0%
!! AAGAGATATTAAAATAATCT+TGG + chr1_1:61293234-61293253 None:intergenic 15.0%
!!! GTTTTTATTTTAAAAACTTG+AGG - chr1_1:61293879-61293898 Msa0033670:intron 15.0%
!!! GAATAATTATAAGTTTTTAG+GGG + chr1_1:61294645-61294664 None:intergenic 15.0%
!!! GGAATAATTATAAGTTTTTA+GGG + chr1_1:61294646-61294665 None:intergenic 15.0%
!!! TGGAATAATTATAAGTTTTT+AGG + chr1_1:61293214-61293233 None:intergenic 15.0%
!!! TTTTTTATAAAATGAAATGG+AGG + chr1_1:61295154-61295173 None:intergenic 15.0%
!! AAAAATCTAATTCTAAACAA+TGG + chr1_1:61295589-61295608 None:intergenic 15.0%
!!! ATTGTTTAGAATTAGATTTT+TGG - chr1_1:61295588-61295607 Msa0033670:CDS 15.0%
!! AAGTTGAATTAAATGTAAAG+TGG - chr1_1:61291337-61291356 Msa0033670:intron 20.0%
!! AGTTGAATTAAATGTAAAGT+GGG - chr1_1:61291338-61291357 Msa0033670:intron 20.0%
!! TATCTTCAAATTATCAATTC+TGG - chr1_1:61291444-61291463 Msa0033670:intron 20.0%
!!! GAATTGATTTTGACATTATT+TGG + chr1_1:61291498-61291517 None:intergenic 20.0%
!!! AAATTCTGTTCAAATTTTAC+AGG + chr1_1:61291538-61291557 None:intergenic 20.0%
!! AAAAAAAATAATTTGAGGGT+TGG + chr1_1:61292013-61292032 None:intergenic 20.0%
!! TTCAAAATGCAAAAACAATA+GGG + chr1_1:61292045-61292064 None:intergenic 20.0%
!! GCAAAAAAAATAAAATTAGG+AGG + chr1_1:61292068-61292087 None:intergenic 20.0%
!! GGTGCAAAAAAAATAAAATT+AGG + chr1_1:61292071-61292090 None:intergenic 20.0%
!! TTTATATAGTCAAAATTGAG+TGG - chr1_1:61292257-61292276 Msa0033670:intron 20.0%
!! TCATTAGTGTAATAACAAAA+CGG + chr1_1:61292283-61292302 None:intergenic 20.0%
!! TATTACACTAATGAATTCTA+TGG - chr1_1:61292289-61292308 Msa0033670:intron 20.0%
!!! AAAAAATTCTTTTCTGAACA+AGG - chr1_1:61293359-61293378 Msa0033670:intron 20.0%
!!! TTTTATTTTTTAATGGCAGT+TGG + chr1_1:61294001-61294020 None:intergenic 20.0%
!!! AGAATTATCTGAAATTATGA+TGG - chr1_1:61294320-61294339 Msa0033670:intron 20.0%
!! GAAAATTGAAGTAATAAAGA+AGG - chr1_1:61294486-61294505 Msa0033670:intron 20.0%
!! AAGAGATATTAAAACAGTAT+TGG + chr1_1:61294667-61294686 None:intergenic 20.0%
!!! ATTTTCTCATTAATGCAAAA+GGG + chr1_1:61294736-61294755 None:intergenic 20.0%
!!! AATTTTCTCATTAATGCAAA+AGG + chr1_1:61294737-61294756 None:intergenic 20.0%
!!! CTGAAAAGGTTTTTATTTTT+TGG + chr1_1:61294768-61294787 None:intergenic 20.0%
!! TTTGTAGAACCAAAATTTAT+GGG + chr1_1:61295495-61295514 None:intergenic 20.0%
!! ATTTGTAGAACCAAAATTTA+TGG + chr1_1:61295496-61295515 None:intergenic 20.0%
!!! TAAATTTTGGTTCTACAAAT+AGG - chr1_1:61295496-61295515 Msa0033670:CDS 20.0%
! CAAACAACAAACTTACTATA+AGG - chr1_1:61291068-61291087 Msa0033670:intron 25.0%
!!! TGAGTTGAACAATAATTTTG+AGG - chr1_1:61291385-61291404 Msa0033670:intron 25.0%
! AGAAAAAGCTCAAAGTTATA+TGG + chr1_1:61291613-61291632 None:intergenic 25.0%
! AGAATTAACTCCAAATACAA+TGG + chr1_1:61291897-61291916 None:intergenic 25.0%
! GTTCAAAATGCAAAAACAAT+AGG + chr1_1:61292046-61292065 None:intergenic 25.0%
!!! TGATTTTTTTGGATATGCAA+TGG - chr1_1:61292230-61292249 Msa0033670:intron 25.0%
! TTCATACTTATCCAATATTG+CGG - chr1_1:61293613-61293632 Msa0033670:intron 25.0%
! TTCAGTGCATAAAAAAGAAA+TGG + chr1_1:61293645-61293664 None:intergenic 25.0%
!!! TTTTTTATGCACTGAAGTTT+AGG - chr1_1:61293649-61293668 Msa0033670:intron 25.0%
! AATTTATAGTTCTTCACGTT+TGG - chr1_1:61293762-61293781 Msa0033670:intron 25.0%
!!! TCATTTCTAGAATGGTAAAA+AGG + chr1_1:61294044-61294063 None:intergenic 25.0%
! CATAAGTGGTTTATAGATTT+GGG + chr1_1:61294092-61294111 None:intergenic 25.0%
!!! TATATGATTTGTTCTGAACA+TGG + chr1_1:61294190-61294209 None:intergenic 25.0%
! GAAAAGCTTACGATAATAAT+AGG - chr1_1:61294373-61294392 Msa0033670:intron 25.0%
! TATCTATTTGAAAAGACCTT+AGG - chr1_1:61294554-61294573 Msa0033670:CDS 25.0%
! ATCTATTTGAAAAGACCTTA+GGG - chr1_1:61294555-61294574 Msa0033670:CDS 25.0%
! TGTCTACTACAAAATTAGAT+GGG - chr1_1:61294586-61294605 Msa0033670:CDS 25.0%
!!! ACTGTTTTAATATCTCTTTC+TGG - chr1_1:61294669-61294688 Msa0033670:intron 25.0%
!! TTTTCTCATTAATGCAAAAG+GGG + chr1_1:61294735-61294754 None:intergenic 25.0%
!! ATAAAAACCTTTTCAGAACA+AGG - chr1_1:61294772-61294791 Msa0033670:intron 25.0%
! TATTCATCAGTGGTTATAAA+CGG + chr1_1:61295112-61295131 None:intergenic 25.0%
! AACAAAATCTTATTCATCAG+TGG + chr1_1:61295122-61295141 None:intergenic 25.0%
! TTGAAATGGAACATTACATT+GGG + chr1_1:61295440-61295459 None:intergenic 25.0%
! CAGATATTGATACTTTAATC+TGG - chr1_1:61295619-61295638 Msa0033670:CDS 25.0%
TGAATTTGGGGATGAAATTA+GGG + chr1_1:61290675-61290694 None:intergenic 30.0%
TTGAATTTGGGGATGAAATT+AGG + chr1_1:61290676-61290695 None:intergenic 30.0%
AAGTTGAAATTTCTGTGGAT+TGG + chr1_1:61290730-61290749 None:intergenic 30.0%
!! ACTTCAAGTTGAAATTTCTG+TGG + chr1_1:61290735-61290754 None:intergenic 30.0%
! GTGGATTCATTTGACATTTT+GGG - chr1_1:61290948-61290967 Msa0033670:CDS 30.0%
!! GATACTATTGATTCTCTTGA+TGG - chr1_1:61291045-61291064 Msa0033670:CDS 30.0%
AATTGAATGACAATGTGTTG+TGG - chr1_1:61291146-61291165 Msa0033670:intron 30.0%
!! TGTGTTGTGGATTTTTGTTT+AGG - chr1_1:61291159-61291178 Msa0033670:intron 30.0%
TTCATTATGTCTGATGACAA+TGG - chr1_1:61291253-61291272 Msa0033670:intron 30.0%
GCGACAAAAATGAATTGATT+CGG - chr1_1:61291310-61291329 Msa0033670:intron 30.0%
! AATGTAAAGTGGGTATTGTT+TGG - chr1_1:61291348-61291367 Msa0033670:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr1_1:61291405-61291424 Msa0033670:intron 30.0%
CTTCAAATTATCAATTCTGG+AGG - chr1_1:61291447-61291466 Msa0033670:intron 30.0%
ATTTGAACAGAATTTACCAG+TGG - chr1_1:61291543-61291562 Msa0033670:intron 30.0%
!! GCTTTTTCTGTTATTGTTTC+AGG - chr1_1:61291624-61291643 Msa0033670:intron 30.0%
TGTTAACATGCCATTGTATT+TGG - chr1_1:61291884-61291903 Msa0033670:intron 30.0%
GAATGAAGAGAAAGTTGTTT+GGG + chr1_1:61292107-61292126 None:intergenic 30.0%
TGAATGAAGAGAAAGTTGTT+TGG + chr1_1:61292108-61292127 None:intergenic 30.0%
TCTCTAACCTATATGCAATT+TGG - chr1_1:61292146-61292165 Msa0033670:intron 30.0%
CTCTAACCTATATGCAATTT+GGG - chr1_1:61292147-61292166 Msa0033670:intron 30.0%
TCTAACCTATATGCAATTTG+GGG - chr1_1:61292148-61292167 Msa0033670:intron 30.0%
GATACATTCTTGATACTTAG+TGG + chr1_1:61292346-61292365 None:intergenic 30.0%
AAGTATCAAGAATGTATCGT+AGG - chr1_1:61292348-61292367 Msa0033670:intron 30.0%
AGTATCAAGAATGTATCGTA+GGG - chr1_1:61292349-61292368 Msa0033670:intron 30.0%
! TCATAAACTTGCTTCAAACA+AGG + chr1_1:61292391-61292410 None:intergenic 30.0%
TGCAATCTTTATCTGATTCT+TGG - chr1_1:61292421-61292440 Msa0033670:intron 30.0%
TTTGTTTGTATGATATGTGC+TGG - chr1_1:61292465-61292484 Msa0033670:intron 30.0%
AATTAACACGAAACTCCATA+GGG - chr1_1:61292513-61292532 Msa0033670:intron 30.0%
TATACCAAGAGATATGTGTT+CGG - chr1_1:61292641-61292660 Msa0033670:intron 30.0%
! TTTAGAACATTAAACCTCGT+AGG - chr1_1:61292696-61292715 Msa0033670:intron 30.0%
AGACATTCGTAAAGTATGTT+TGG - chr1_1:61292719-61292738 Msa0033670:intron 30.0%
TCAGTGCATGAAAAATGAAA+TGG + chr1_1:61292950-61292969 None:intergenic 30.0%
! TTTTTCATGCACTGAAGTTT+AGG - chr1_1:61292955-61292974 Msa0033670:intron 30.0%
!! ATCCATTAAGGATTAGTTTC+TGG - chr1_1:61293062-61293081 Msa0033670:intron 30.0%
AAAGTTCTCATTAATGCAGA+AGG + chr1_1:61293322-61293341 None:intergenic 30.0%
! TCTTAATGGAAAAGGTACAA+AGG + chr1_1:61293422-61293441 None:intergenic 30.0%
! TAGCTGACTCAATATAATAC+AGG + chr1_1:61293512-61293531 None:intergenic 30.0%
AGTGCATAAAAAAGAAATGG+AGG + chr1_1:61293642-61293661 None:intergenic 30.0%
ATTGTGAAATAGTTGAGATG+CGG - chr1_1:61293834-61293853 Msa0033670:intron 30.0%
! GGGTGTATATGTTGTTTAAT+AGG + chr1_1:61293930-61293949 None:intergenic 30.0%
!!! ATTTTTTAATGGCAGTTGGA+TGG + chr1_1:61293997-61294016 None:intergenic 30.0%
! CCTAAGTATCATTTCTAGAA+TGG + chr1_1:61294052-61294071 None:intergenic 30.0%
! CCATTCTAGAAATGATACTT+AGG - chr1_1:61294049-61294068 Msa0033670:intron 30.0%
! GAAATGATACTTAGGCTTTT+CGG - chr1_1:61294057-61294076 Msa0033670:intron 30.0%
CCATAAGTGGTTTATAGATT+TGG + chr1_1:61294093-61294112 None:intergenic 30.0%
CCAAATCTATAAACCACTTA+TGG - chr1_1:61294090-61294109 Msa0033670:intron 30.0%
! CATTGGGTTTCAAGTATTAT+CGG - chr1_1:61294134-61294153 Msa0033670:intron 30.0%
AGCTTCAATAGAATAGCTAA+CGG - chr1_1:61294436-61294455 Msa0033670:intron 30.0%
GGTTATGAATTCAATTTCTC+AGG - chr1_1:61294507-61294526 Msa0033670:intron 30.0%
TCTATTTGAAAAGACCTTAG+GGG - chr1_1:61294556-61294575 Msa0033670:CDS 30.0%
GTGTCTACTACAAAATTAGA+TGG - chr1_1:61294585-61294604 Msa0033670:CDS 30.0%
!! AAAAGAACCTTGTTCTGAAA+AGG + chr1_1:61294782-61294801 None:intergenic 30.0%
!!! GGTTCTTTTGATTTCATTCT+TGG - chr1_1:61294793-61294812 Msa0033670:intron 30.0%
TTGTCAATAAAACTGTGCTT+TGG - chr1_1:61294821-61294840 Msa0033670:intron 30.0%
AAAGCACATATCAAAAGTGA+AGG - chr1_1:61294877-61294896 Msa0033670:intron 30.0%
TAATGCAAGCTGCAAAATAT+TGG + chr1_1:61294911-61294930 None:intergenic 30.0%
TTTGCAGCTTGCATTATATT+TGG - chr1_1:61294915-61294934 Msa0033670:intron 30.0%
CTTGCATTATATTTGGTCAA+TGG - chr1_1:61294922-61294941 Msa0033670:intron 30.0%
ATCCAATATTATCGTTACCT+TGG - chr1_1:61295026-61295045 Msa0033670:intron 30.0%
TTTCTTTATCTGGATCAACA+TGG - chr1_1:61295050-61295069 Msa0033670:intron 30.0%
CATGTCTAATATTTCCAGTT+GGG + chr1_1:61295321-61295340 None:intergenic 30.0%
TCATGTCTAATATTTCCAGT+TGG + chr1_1:61295322-61295341 None:intergenic 30.0%
AACTGGAAATATTAGACATG+AGG - chr1_1:61295321-61295340 Msa0033670:CDS 30.0%
GAAATATTAGACATGAGGAT+GGG - chr1_1:61295326-61295345 Msa0033670:CDS 30.0%
AAATATTAGACATGAGGATG+GGG - chr1_1:61295327-61295346 Msa0033670:CDS 30.0%
GTTGAAATGGAACATTACAT+TGG + chr1_1:61295441-61295460 None:intergenic 30.0%
! AAGAAGTTTCTAGGTTGAAA+TGG + chr1_1:61295454-61295473 None:intergenic 30.0%
! TGCATTTTGCCCATAAATTT+TGG - chr1_1:61295483-61295502 Msa0033670:CDS 30.0%
TCCAGCAAAATTACAATGAA+CGG + chr1_1:61295670-61295689 None:intergenic 30.0%
! TAATTTTGCTGGAGAAGAAT+TGG - chr1_1:61295677-61295696 Msa0033670:CDS 30.0%
GAGAAGAATTGGTGAAAATT+TGG - chr1_1:61295688-61295707 Msa0033670:exon 30.0%
AAACTGGGAGTTTGAATTTG+GGG + chr1_1:61290687-61290706 None:intergenic 35.0%
GAAACTGGGAGTTTGAATTT+GGG + chr1_1:61290688-61290707 None:intergenic 35.0%
!! GAAATTTCTGTGGATTGGTT+TGG + chr1_1:61290725-61290744 None:intergenic 35.0%
TCCAATTCCATCACCAATAA+TGG - chr1_1:61290757-61290776 Msa0033670:three_prime_UTR 35.0%
!! TCCATTATTGGTGATGGAAT+TGG + chr1_1:61290761-61290780 None:intergenic 35.0%
ATGAAATTTCAGGGGGTTTA+GGG + chr1_1:61290795-61290814 None:intergenic 35.0%
TTGTTCCATGAAATTTCAGG+GGG + chr1_1:61290802-61290821 None:intergenic 35.0%
CTTGTTCCATGAAATTTCAG+GGG + chr1_1:61290803-61290822 None:intergenic 35.0%
CCTTGTTCCATGAAATTTCA+GGG + chr1_1:61290804-61290823 None:intergenic 35.0%
TCCTTGTTCCATGAAATTTC+AGG + chr1_1:61290805-61290824 None:intergenic 35.0%
AGCAACTCCGTCAATTTAAT+CGG - chr1_1:61290829-61290848 Msa0033670:three_prime_UTR 35.0%
! CGTGGATTCATTTGACATTT+TGG - chr1_1:61290947-61290966 Msa0033670:CDS 35.0%
!! GTTGTGGATTTTTGTTTAGG+TGG - chr1_1:61291162-61291181 Msa0033670:intron 35.0%
AGCAGCTGAATTTCATTGAT+AGG - chr1_1:61291191-61291210 Msa0033670:intron 35.0%
TACTACATACTACAATCCAC+TGG + chr1_1:61291562-61291581 None:intergenic 35.0%
ATGTAGTATCTACCTTTAGC+TGG - chr1_1:61291574-61291593 Msa0033670:intron 35.0%
TGTAGTATCTACCTTTAGCT+GGG - chr1_1:61291575-61291594 Msa0033670:intron 35.0%
TGTTATTGTTTCAGGCAAGA+AGG - chr1_1:61291632-61291651 Msa0033670:intron 35.0%
AAGGTGAGTTATGCTTCAAA+TGG - chr1_1:61291651-61291670 Msa0033670:intron 35.0%
TATGCTTCAAATGGTATGAC+TGG - chr1_1:61291660-61291679 Msa0033670:intron 35.0%
!! GAGAAAGTTGTTTGGGTTTT+TGG + chr1_1:61292100-61292119 None:intergenic 35.0%
CACAACACAGACATATCATT+AGG + chr1_1:61292175-61292194 None:intergenic 35.0%
TATGATATGTGCTGGAAACA+TGG - chr1_1:61292473-61292492 Msa0033670:intron 35.0%
TGGAGTTTCGTGTTAATTGA+AGG + chr1_1:61292511-61292530 None:intergenic 35.0%
CAATTAACACGAAACTCCAT+AGG - chr1_1:61292512-61292531 Msa0033670:intron 35.0%
GTGCATGAAAAATGAAATGG+AGG + chr1_1:61292947-61292966 None:intergenic 35.0%
! ATGCACTGAAGTTTAGGATT+AGG - chr1_1:61292961-61292980 Msa0033670:intron 35.0%
! TGAAGTTTAGGATTAGGAAG+AGG - chr1_1:61292967-61292986 Msa0033670:intron 35.0%
! GAAGTTTAGGATTAGGAAGA+GGG - chr1_1:61292968-61292987 Msa0033670:intron 35.0%
CTCCAGAAACTAATCCTTAA+TGG + chr1_1:61293067-61293086 None:intergenic 35.0%
! TCTGAACAAGGTTTTTACGT+CGG - chr1_1:61293371-61293390 Msa0033670:intron 35.0%
TATTGGAATTGTTCCCTTCA+CGG + chr1_1:61293481-61293500 None:intergenic 35.0%
TAATACAGGCAGCAAGATAT+TGG + chr1_1:61293498-61293517 None:intergenic 35.0%
CCAAAGGATGAGATTTATGT+CGG - chr1_1:61293709-61293728 Msa0033670:intron 35.0%
! TGTTGTTTAATAGGACCTCA+GGG + chr1_1:61293921-61293940 None:intergenic 35.0%
! ATGTTGTTTAATAGGACCTC+AGG + chr1_1:61293922-61293941 None:intergenic 35.0%
TTGGATGGAATTTAACAGCA+GGG + chr1_1:61293982-61294001 None:intergenic 35.0%
AAGTGGTTTATAGATTTGGG+TGG + chr1_1:61294089-61294108 None:intergenic 35.0%
TACTTGAAACCCAATGCTAT+GGG + chr1_1:61294130-61294149 None:intergenic 35.0%
ATACTTGAAACCCAATGCTA+TGG + chr1_1:61294131-61294150 None:intergenic 35.0%
TGGTATCTTCATTCGTTATG+TGG + chr1_1:61294170-61294189 None:intergenic 35.0%
GAATATTCAGTGTTCGTCAA+TGG - chr1_1:61294395-61294414 Msa0033670:intron 35.0%
GCTTCAATAGAATAGCTAAC+GGG - chr1_1:61294437-61294456 Msa0033670:intron 35.0%
CTTCAATAGAATAGCTAACG+GGG - chr1_1:61294438-61294457 Msa0033670:intron 35.0%
TTCAATAGAATAGCTAACGG+GGG - chr1_1:61294439-61294458 Msa0033670:intron 35.0%
! ATTTCTCAGGTGTTAAGTTG+AGG - chr1_1:61294520-61294539 Msa0033670:intron 35.0%
! ATGGGTTGTTTATACCTCAA+GGG - chr1_1:61294604-61294623 Msa0033670:CDS 35.0%
AAAACTGTGCTTTGGTACAT+AGG - chr1_1:61294829-61294848 Msa0033670:intron 35.0%
AGCCAAGGTAACGATAATAT+TGG + chr1_1:61295031-61295050 None:intergenic 35.0%
! TTACCTTGGCTTTCTTTATC+TGG - chr1_1:61295040-61295059 Msa0033670:intron 35.0%
GTTATAAACGGAGTTAGACA+TGG + chr1_1:61295100-61295119 None:intergenic 35.0%
TGCTTAAAATCAGGAGCTTT+GGG + chr1_1:61295239-61295258 None:intergenic 35.0%
GTATCCTTGTGCTTAAAATC+AGG + chr1_1:61295248-61295267 None:intergenic 35.0%
! GATTTTAAGCACAAGGATAC+TGG - chr1_1:61295248-61295267 Msa0033670:CDS 35.0%
GGAAATATTAGACATGAGGA+TGG - chr1_1:61295325-61295344 Msa0033670:CDS 35.0%
AACTGCACAAAGAAGTTTCT+AGG + chr1_1:61295463-61295482 None:intergenic 35.0%
GGAACATTGTTTATAGTCTC+TGG - chr1_1:61295517-61295536 Msa0033670:CDS 35.0%
! TCTAGTCTATTTTATCAGCC+TGG - chr1_1:61295560-61295579 Msa0033670:CDS 35.0%
AATTCTAAACAATGGTAGCC+AGG + chr1_1:61295581-61295600 None:intergenic 35.0%
CAAAATTACAATGAACGGGT+AGG + chr1_1:61295665-61295684 None:intergenic 35.0%
CCAGCAAAATTACAATGAAC+GGG + chr1_1:61295669-61295688 None:intergenic 35.0%
TCGTTTCACTCGATGATAAG+GGG + chr1_1:61290573-61290592 None:intergenic 40.0%
GTCGTTTCACTCGATGATAA+GGG + chr1_1:61290574-61290593 None:intergenic 40.0%
! TGTCGTTTCACTCGATGATA+AGG + chr1_1:61290575-61290594 None:intergenic 40.0%
TGAAACGACAACAGCAGAAA+TGG - chr1_1:61290585-61290604 Msa0033670:three_prime_UTR 40.0%
!! GGATGAAATTAGGGTTTTGG+GGG + chr1_1:61290666-61290685 None:intergenic 40.0%
! GGGATGAAATTAGGGTTTTG+GGG + chr1_1:61290667-61290686 None:intergenic 40.0%
! GGGGATGAAATTAGGGTTTT+GGG + chr1_1:61290668-61290687 None:intergenic 40.0%
! TGGGGATGAAATTAGGGTTT+TGG + chr1_1:61290669-61290688 None:intergenic 40.0%
GGAAACTGGGAGTTTGAATT+TGG + chr1_1:61290689-61290708 None:intergenic 40.0%
!! AAGAGAGTGTTGTGGAAACT+GGG + chr1_1:61290702-61290721 None:intergenic 40.0%
GTATGATGCTGCTCCATTAT+TGG + chr1_1:61290773-61290792 None:intergenic 40.0%
CATGAAATTTCAGGGGGTTT+AGG + chr1_1:61290796-61290815 None:intergenic 40.0%
CTAAACCCCCTGAAATTTCA+TGG - chr1_1:61290794-61290813 Msa0033670:three_prime_UTR 40.0%
CCCTGAAATTTCATGGAACA+AGG - chr1_1:61290801-61290820 Msa0033670:three_prime_UTR 40.0%
TTAAATTGACGGAGTTGCTG+AGG + chr1_1:61290828-61290847 None:intergenic 40.0%
GACGAAGCCGATTAAATTGA+CGG + chr1_1:61290839-61290858 None:intergenic 40.0%
GAAATCAAACACCTTCCTTC+CGG - chr1_1:61290871-61290890 Msa0033670:exon 40.0%
AAATCAAACACCTTCCTTCC+GGG - chr1_1:61290872-61290891 Msa0033670:exon 40.0%
!! TTGCGAAGCGTTTTTCTTGA+CGG + chr1_1:61290923-61290942 None:intergenic 40.0%
GCTTCTCAACATGTTCAGAA+AGG - chr1_1:61290988-61291007 Msa0033670:CDS 40.0%
GGTCATCAGATTCATGTTTC+CGG - chr1_1:61291009-61291028 Msa0033670:CDS 40.0%
ATCAGATTCATGTTTCCGGT+CGG - chr1_1:61291013-61291032 Msa0033670:CDS 40.0%
AAAAAGCGAAACCCAGCTAA+AGG + chr1_1:61291589-61291608 None:intergenic 40.0%
!! AAATGGTATGACTGGTTCTG+TGG - chr1_1:61291668-61291687 Msa0033670:intron 40.0%
!! TCTACTAGCCTTTCAATCAG+TGG - chr1_1:61291955-61291974 Msa0033670:intron 40.0%
TAGGACCCCAAATTGCATAT+AGG + chr1_1:61292156-61292175 None:intergenic 40.0%
CACAATCTTCAGAGCAAAAG+AGG + chr1_1:61292540-61292559 None:intergenic 40.0%
GAGGAAATCATTGAAAGCAG+TGG + chr1_1:61292928-61292947 None:intergenic 40.0%
! TTTAGGATTAGGAAGAGGGT+AGG - chr1_1:61292972-61292991 Msa0033670:intron 40.0%
CCACAGTACAAGGTTTATGT+CGG - chr1_1:61293024-61293043 Msa0033670:intron 40.0%
! GCTAAGCTTTATGTTTGCAG+AGG - chr1_1:61293093-61293112 Msa0033670:intron 40.0%
! CAGCTGACTCTTAATGGAAA+AGG + chr1_1:61293430-61293449 None:intergenic 40.0%
! TACAGTCAGCTGACTCTTAA+TGG + chr1_1:61293436-61293455 None:intergenic 40.0%
AAAGCACATATCAACCGTGA+AGG - chr1_1:61293464-61293483 Msa0033670:intron 40.0%
AAGCACATATCAACCGTGAA+GGG - chr1_1:61293465-61293484 Msa0033670:intron 40.0%
AATGGAGGAAACCGCAATAT+TGG + chr1_1:61293627-61293646 None:intergenic 40.0%
! TGCACTGAAGTTTAGGACAA+TGG - chr1_1:61293656-61293675 Msa0033670:intron 40.0%
! CTGAAGTTTAGGACAATGGT+AGG - chr1_1:61293660-61293679 Msa0033670:intron 40.0%
TGGTAGGTTTCCCTATTACA+AGG - chr1_1:61293676-61293695 Msa0033670:intron 40.0%
AGGTTTCCCTATTACAAGGT+TGG - chr1_1:61293680-61293699 Msa0033670:intron 40.0%
GGTTTCCCTATTACAAGGTT+GGG - chr1_1:61293681-61293700 Msa0033670:intron 40.0%
CAAGTCCCAACCTTGTAATA+GGG + chr1_1:61293689-61293708 None:intergenic 40.0%
CCGACATAAATCTCATCCTT+TGG + chr1_1:61293712-61293731 None:intergenic 40.0%
TGAAATAGTTGAGATGCGGA+AGG - chr1_1:61293838-61293857 Msa0033670:intron 40.0%
GTTGTTTAATAGGACCTCAG+GGG + chr1_1:61293920-61293939 None:intergenic 40.0%
TGTCTACTGTGAAAGTAGAG+GGG + chr1_1:61293951-61293970 None:intergenic 40.0%
GTGTCTACTGTGAAAGTAGA+GGG + chr1_1:61293952-61293971 None:intergenic 40.0%
TGTGTCTACTGTGAAAGTAG+AGG + chr1_1:61293953-61293972 None:intergenic 40.0%
TGGATGGAATTTAACAGCAG+GGG + chr1_1:61293981-61294000 None:intergenic 40.0%
GTTGGATGGAATTTAACAGC+AGG + chr1_1:61293983-61294002 None:intergenic 40.0%
! CTTGTGCTCTTTTCCATAAG+TGG + chr1_1:61294106-61294125 None:intergenic 40.0%
TAGTGTTTGCATGAGACATC+TGG - chr1_1:61294246-61294265 Msa0033670:intron 40.0%
AGTGTTTGCATGAGACATCT+GGG - chr1_1:61294247-61294266 Msa0033670:intron 40.0%
AGTGTTCGTCAATGGAAAAC+TGG - chr1_1:61294403-61294422 Msa0033670:intron 40.0%
!! GATGGGTTGTTTATACCTCA+AGG - chr1_1:61294603-61294622 Msa0033670:CDS 40.0%
GTACATAGGCCAATAAGAAC+TGG - chr1_1:61294843-61294862 Msa0033670:intron 40.0%
TGCAAGTAGCCAGTTCTTAT+TGG + chr1_1:61294855-61294874 None:intergenic 40.0%
GATCCAGATAAAGAAAGCCA+AGG + chr1_1:61295046-61295065 None:intergenic 40.0%
TGCGTCTTCACAAACATTTC+TGG - chr1_1:61295196-61295215 Msa0033670:intron 40.0%
!! CATTTCTGGTAACTTCACAG+AGG - chr1_1:61295210-61295229 Msa0033670:intron 40.0%
GCTTAAAATCAGGAGCTTTG+GGG + chr1_1:61295238-61295257 None:intergenic 40.0%
GTGCTTAAAATCAGGAGCTT+TGG + chr1_1:61295240-61295259 None:intergenic 40.0%
! AGCTCCTGATTTTAAGCACA+AGG - chr1_1:61295241-61295260 Msa0033670:CDS 40.0%
CTTATACCGGTCAAAATGGT+AGG - chr1_1:61295351-61295370 Msa0033670:CDS 40.0%
ACATTACATTGGGCAAGGTT+TGG + chr1_1:61295430-61295449 None:intergenic 40.0%
ATGGAACATTACATTGGGCA+AGG + chr1_1:61295435-61295454 None:intergenic 40.0%
! CCCGTTCATTGTAATTTTGC+TGG - chr1_1:61295666-61295685 Msa0033670:CDS 40.0%
ACTCGATGATAAGGGGGAAT+TGG + chr1_1:61290566-61290585 None:intergenic 45.0%
CGTTTCACTCGATGATAAGG+GGG + chr1_1:61290572-61290591 None:intergenic 45.0%
!!! ATTAGGGTTTTGGGGGAAAG+TGG + chr1_1:61290659-61290678 None:intergenic 45.0%
!! GAAGAGAGTGTTGTGGAAAC+TGG + chr1_1:61290703-61290722 None:intergenic 45.0%
!! TGGTTTGGAAGAGAGTGTTG+TGG + chr1_1:61290710-61290729 None:intergenic 45.0%
TGCTGCTCCATTATTGGTGA+TGG + chr1_1:61290767-61290786 None:intergenic 45.0%
!! GAAGGTGTTTGATTTCGACC+GGG + chr1_1:61290867-61290886 None:intergenic 45.0%
!! GGAAGGTGTTTGATTTCGAC+CGG + chr1_1:61290868-61290887 None:intergenic 45.0%
AGTCCAAGCAACAACTTTCC+CGG + chr1_1:61290893-61290912 None:intergenic 45.0%
AAAACGCTTCGCAAATGTCG+TGG - chr1_1:61290929-61290948 Msa0033670:CDS 45.0%
AGTATCAGTAACAAGCCGAC+CGG + chr1_1:61291031-61291050 None:intergenic 45.0%
!! CTGGTTCTGTGGTGGAATTA+TGG - chr1_1:61291679-61291698 Msa0033670:intron 45.0%
AAGCTTTCTTTGCCAACCCA+GGG - chr1_1:61291703-61291722 Msa0033670:intron 45.0%
! TAGTAGAAAGAGCGTGGTTG+AGG + chr1_1:61291942-61291961 None:intergenic 45.0%
AAAGGCTAGTAGAAAGAGCG+TGG + chr1_1:61291948-61291967 None:intergenic 45.0%
!! ACTAGCCTTTCAATCAGTGG+CGG - chr1_1:61291958-61291977 Msa0033670:intron 45.0%
!!! TGTTTGGGTTTTTGGCTAGC+TGG + chr1_1:61292092-61292111 None:intergenic 45.0%
GTTGCCGAACACATATCTCT+TGG + chr1_1:61292648-61292667 None:intergenic 45.0%
CTTTACGAATGTCTCCTACG+AGG + chr1_1:61292713-61292732 None:intergenic 45.0%
AAGTCCTAAGCCTAGAAACC+GGG + chr1_1:61293001-61293020 None:intergenic 45.0%
CAAGTCCTAAGCCTAGAAAC+CGG + chr1_1:61293002-61293021 None:intergenic 45.0%
CCGACATAAACCTTGTACTG+TGG + chr1_1:61293027-61293046 None:intergenic 45.0%
GAGTATGCAGTATGCCAACA+GGG + chr1_1:61293300-61293319 None:intergenic 45.0%
GCAAGTCCCAACCTTGTAAT+AGG + chr1_1:61293690-61293709 None:intergenic 45.0%
!! AATTACACTGACTTCCCCTG+AGG - chr1_1:61293903-61293922 Msa0033670:intron 45.0%
GTCTACTGTGAAAGTAGAGG+GGG + chr1_1:61293950-61293969 None:intergenic 45.0%
AGCACAAGACCCATAGCATT+GGG - chr1_1:61294118-61294137 Msa0033670:intron 45.0%
!! TCTCAGGTGTTAAGTTGAGG+AGG - chr1_1:61294523-61294542 Msa0033670:intron 45.0%
!! CTCAGGTGTTAAGTTGAGGA+GGG - chr1_1:61294524-61294543 Msa0033670:intron 45.0%
GTAGACACTAATCTCCCCTA+AGG + chr1_1:61294573-61294592 None:intergenic 45.0%
GGTTGTTTATACCTCAAGGG+AGG - chr1_1:61294607-61294626 Msa0033670:CDS 45.0%
AATTACACTGACCTCCCTTG+AGG + chr1_1:61294621-61294640 None:intergenic 45.0%
! ATGAGGATGGGGTCTTATAC+CGG - chr1_1:61295338-61295357 Msa0033670:CDS 45.0%
! GGGTCTTATACCGGTCAAAA+TGG - chr1_1:61295347-61295366 Msa0033670:CDS 45.0%
ATCTGCGCTCACCATATCTA+CGG + chr1_1:61295381-61295400 None:intergenic 45.0%
!! TTGAATATAATATTATTATA+AGG - chr1_1:61292784-61292803 Msa0033670:intron 5.0%
!!! TTTTTGTTTTTATTTTTTAA+TGG + chr1_1:61294008-61294027 None:intergenic 5.0%
!!! GGTTTTGGGGGAAAGTGGTA+AGG + chr1_1:61290654-61290673 None:intergenic 50.0%
CAACAACTTTCCCGGAAGGA+AGG + chr1_1:61290885-61290904 None:intergenic 50.0%
CAAGCAACAACTTTCCCGGA+AGG + chr1_1:61290889-61290908 None:intergenic 50.0%
CTTCCGGGAAAGTTGTTGCT+TGG - chr1_1:61290887-61290906 Msa0033670:exon 50.0%
TCTTGATCATGTGACCGCAC+CGG + chr1_1:61291226-61291245 None:intergenic 50.0%
!! TGGTATGACTGGTTCTGTGG+TGG - chr1_1:61291671-61291690 Msa0033670:intron 50.0%
CAAGCTTTCTTTGCCAACCC+AGG - chr1_1:61291702-61291721 Msa0033670:intron 50.0%
AGCTTTCTTTGCCAACCCAG+GGG - chr1_1:61291704-61291723 Msa0033670:intron 50.0%
GTGGGACAATAGGAGGAACA+AGG - chr1_1:61291731-61291750 Msa0033670:intron 50.0%
CAGAGCAAAAGAGGTCCCTA+TGG + chr1_1:61292531-61292550 None:intergenic 50.0%
AAATCGAACCCCCTGATCCA+AGG - chr1_1:61292891-61292910 Msa0033670:intron 50.0%
AATCGAACCCCCTGATCCAA+GGG - chr1_1:61292892-61292911 Msa0033670:intron 50.0%
CAGTATGCCAACAGGGTTGA+CGG + chr1_1:61293293-61293312 None:intergenic 50.0%
GGAGTATGCAGTATGCCAAC+AGG + chr1_1:61293301-61293320 None:intergenic 50.0%
ACAAGGTTGGGACTTGCCAA+AGG - chr1_1:61293693-61293712 Msa0033670:intron 50.0%
GAGCACAAGACCCATAGCAT+TGG - chr1_1:61294117-61294136 Msa0033670:intron 50.0%
!! AGGTGTTAAGTTGAGGAGGG+AGG - chr1_1:61294527-61294546 Msa0033670:intron 50.0%
AGGATACTGGAGAAGCTCTG+TGG - chr1_1:61295261-61295280 Msa0033670:CDS 50.0%
! GGAGAAGCTCTGTGGATTGA+TGG - chr1_1:61295269-61295288 Msa0033670:CDS 50.0%
ATGGTAGATCCACTCCACCA+TGG - chr1_1:61295288-61295307 Msa0033670:CDS 50.0%
TGGTAGATCCACTCCACCAT+GGG - chr1_1:61295289-61295308 Msa0033670:CDS 50.0%
AGTTGGGATTTGACCCATGG+TGG + chr1_1:61295305-61295324 None:intergenic 50.0%
ACCATGGGTCAAATCCCAAC+TGG - chr1_1:61295304-61295323 Msa0033670:CDS 50.0%
TCCAGTTGGGATTTGACCCA+TGG + chr1_1:61295308-61295327 None:intergenic 50.0%
!! GGGCATCCTACCATTTTGAC+CGG + chr1_1:61295360-61295379 None:intergenic 50.0%
TGGTAGGATGCCCGTAGATA+TGG - chr1_1:61295367-61295386 Msa0033670:CDS 50.0%
TCTGCGCTCACCATATCTAC+GGG + chr1_1:61295380-61295399 None:intergenic 50.0%
TGAACGGGTAGGATCACTCT+TGG + chr1_1:61295654-61295673 None:intergenic 50.0%
! AATCGGCTTCGTCGCAAACC+CGG - chr1_1:61290846-61290865 Msa0033670:three_prime_UTR 55.0%
CATTGATAGGAGTGACGCGC+CGG - chr1_1:61291204-61291223 Msa0033670:intron 55.0%
TATTGTCCCACCACTCCCCT+GGG + chr1_1:61291722-61291741 None:intergenic 55.0%
! TGGCTCCGCCACTGATTGAA+AGG + chr1_1:61291966-61291985 None:intergenic 55.0%
TGCATCCCCTCACCACAATG+TGG + chr1_1:61291986-61292005 None:intergenic 55.0%
TTGCCAAGCCCTTGGATCAG+GGG + chr1_1:61292903-61292922 None:intergenic 55.0%
GTTGCCAAGCCCTTGGATCA+GGG + chr1_1:61292904-61292923 None:intergenic 55.0%
TAGGAAGAGGGTAGGTTGCC+CGG - chr1_1:61292980-61292999 Msa0033670:intron 55.0%
! GTTGCCCGGTTTCTAGGCTT+AGG - chr1_1:61292994-61293013 Msa0033670:intron 55.0%
AGGACTTGCGCCACAGTACA+AGG - chr1_1:61293014-61293033 Msa0033670:intron 55.0%
CAAACAGCCGTCAACCCTGT+TGG - chr1_1:61293283-61293302 Msa0033670:intron 55.0%
! GGATTTGACCCATGGTGGAG+TGG + chr1_1:61295300-61295319 None:intergenic 55.0%
TCTTTGCCAACCCAGGGGAG+TGG - chr1_1:61291709-61291728 Msa0033670:intron 60.0%
CTATTGTCCCACCACTCCCC+TGG + chr1_1:61291723-61291742 None:intergenic 60.0%
! CAGGGGAGTGGTGGGACAAT+AGG - chr1_1:61291721-61291740 Msa0033670:intron 60.0%
! GGGAGTGGTGGGACAATAGG+AGG - chr1_1:61291724-61291743 Msa0033670:intron 60.0%
! TCAGTGGCGGAGCCACATTG+TGG - chr1_1:61291971-61291990 Msa0033670:intron 60.0%
GCGGAGCCACATTGTGGTGA+GGG - chr1_1:61291977-61291996 Msa0033670:intron 60.0%
CGGAGCCACATTGTGGTGAG+GGG - chr1_1:61291978-61291997 Msa0033670:intron 60.0%
AACCCCCTGATCCAAGGGCT+TGG - chr1_1:61292897-61292916 Msa0033670:intron 60.0%
TGCCAAGCCCTTGGATCAGG+GGG + chr1_1:61292902-61292921 None:intergenic 60.0%
CGTTGCCAAGCCCTTGGATC+AGG + chr1_1:61292905-61292924 None:intergenic 60.0%
GGGTAGGTTGCCCGGTTTCT+AGG - chr1_1:61292988-61293007 Msa0033670:intron 60.0%
! ATAGGAGTGACGCGCCGGTG+CGG - chr1_1:61291209-61291228 Msa0033670:intron 65.0%
TTGCCAACCCAGGGGAGTGG+TGG - chr1_1:61291712-61291731 Msa0033670:intron 65.0%
TGCCAACCCAGGGGAGTGGT+GGG - chr1_1:61291713-61291732 Msa0033670:intron 65.0%
GGCGGAGCCACATTGTGGTG+AGG - chr1_1:61291976-61291995 Msa0033670:intron 65.0%
CAGTGGCGTTGCCAAGCCCT+TGG + chr1_1:61292911-61292930 None:intergenic 65.0%
GTCCCACCACTCCCCTGGGT+TGG + chr1_1:61291718-61291737 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61290561 61295745 61290561 ID=Msa0033670;Name=Msa0033670
chr1_1 mRNA 61290561 61295745 61290561 ID=Msa0033670-mRNA-1;Parent=Msa0033670;Name=Msa0033670-mRNA-1;_AED=0.21;_eAED=0.21;_QI=43|0.66|0.75|1|1|1|4|327|271
chr1_1 exon 61290561 61291076 61290561 ID=Msa0033670-mRNA-1:exon:19279;Parent=Msa0033670-mRNA-1
chr1_1 exon 61294554 61294660 61294554 ID=Msa0033670-mRNA-1:exon:19278;Parent=Msa0033670-mRNA-1
chr1_1 exon 61295092 61295125 61295092 ID=Msa0033670-mRNA-1:exon:19277;Parent=Msa0033670-mRNA-1
chr1_1 exon 61295217 61295745 61295217 ID=Msa0033670-mRNA-1:exon:19276;Parent=Msa0033670-mRNA-1
chr1_1 five_prime_UTR 61295703 61295745 61295703 ID=Msa0033670-mRNA-1:five_prime_utr;Parent=Msa0033670-mRNA-1
chr1_1 CDS 61295217 61295702 61295217 ID=Msa0033670-mRNA-1:cds;Parent=Msa0033670-mRNA-1
chr1_1 CDS 61295092 61295125 61295092 ID=Msa0033670-mRNA-1:cds;Parent=Msa0033670-mRNA-1
chr1_1 CDS 61294554 61294660 61294554 ID=Msa0033670-mRNA-1:cds;Parent=Msa0033670-mRNA-1
chr1_1 CDS 61290888 61291076 61290888 ID=Msa0033670-mRNA-1:cds;Parent=Msa0033670-mRNA-1
chr1_1 three_prime_UTR 61290561 61290887 61290561 ID=Msa0033670-mRNA-1:three_prime_utr;Parent=Msa0033670-mRNA-1
Gene Sequence

>Msa0033670

ATGGCGTTAGAGCAAGCAGTTTCACTTTCATCAACTCGCTTCAGAAACCTTACCACTTTCCCCCAAAACCCTAATTTCATCCCCAAATTCAAACTCCCAGTTTCCACAACACTCTCTTCCAAACCAATCCACAGAAATTTCAACTTGAAGTGCTCCAATTCCATCACCAATAATGGAGCAGCATCATACCCTAAACCCCCTGAAATTTCATGGAACAAGGACCTCAGCAACTCCGTCAATTTAATCGGCTTCGTCGCAAACCCGGTCGAAATCAAACACCTTCCTTCCGGGAAAGTTGTTGCTTGGACTCGTCTCTCCGTCAAGAAAAACGCTTCGCAAATGTCGTGGATTCATTTGACATTTTGGGATGAACTTGCTCATGTTGCTTCTCAACATGTTCAGAAAGGTCATCAGATTCATGTTTCCGGTCGGCTTGTTACTGATACTATTGATTCTCTTGATGGCAAACAACAAACTTACTATAAGGTGGTTGCTCAGCAGCTGAATTTCATTGATAGGAGCAAGAAGGTGAGTTATGCTTCAAATGGTATGACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCCAACCCAGGGGAGTGGTGGGACAATAGGAGGAACAAGAGGAACCCCAAAGCTCCTGATTTTAAGCACAAGGATACTGGAGAAGCTCTGTGGATTGATGGTAGATCCACTCCACCATGGGTCAAATCCCAACTGGAAATATTAGACATGAGGATGGGGTCTTATACCGGTCAAAATGGTAGGATGCCCGTAGATATGGTGAGCGCAGATGAAATGTTGTCTTTCTAA

Protein sequence

>Msa0033670

MALEQAVSLSSTRFRNLTTFPQNPNFIPKFKLPVSTTLSSKPIHRNFNLKCSNSITNNGAASYPKPPEISWNKDLSNSVNLIGFVANPVEIKHLPSGKVVAWTRLSVKKNASQMSWIHLTFWDELAHVASQHVQKGHQIHVSGRLVTDTIDSLDGKQQTYYKVVAQQLNFIDRSKKVSYASNGMTGSVVELWQAFFANPGEWWDNRRNKRNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEMLSF*