AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032560 MtrunA17_Chr7g0254481 91.877 357 7 1 1 357 1 335 0.0 645
Msa1032560 MtrunA17_Chr3g0115281 41.702 235 109 3 103 333 84 294 5.22e-52 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032560 AT5G17710.2 55.689 334 112 7 1 327 1 305 4.52e-104 309
Msa1032560 AT5G17710.3 55.090 334 112 7 1 327 1 303 2.42e-102 305
Msa1032560 AT5G17710.1 55.090 334 112 7 1 327 1 303 2.42e-102 305
Msa1032560 AT1G36390.1 46.154 208 90 1 115 322 78 263 1.32e-58 191
Msa1032560 AT1G36390.2 46.154 208 90 1 115 322 78 263 1.32e-58 191

Find 146 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCCAGGAACGTAATTA+TGG 0.202120 7_1:-67512136 Msa1032560:three_prime_UTR
CTCATAATTTCTGTATTCTT+TGG 0.228496 7_1:-67511871 Msa1032560:three_prime_UTR
TAATACTAATTCCCCTTAAA+AGG 0.236252 7_1:+67512076 None:intergenic
ACTTCTTGCTCCGGCTTTGC+AGG 0.275813 7_1:+67512291 None:intergenic
CGTCATTCTCTTTACTGTCC+TGG 0.299850 7_1:+67512235 None:intergenic
TGCTCCGGCTTTGCAGGTCC+TGG 0.309086 7_1:+67512297 None:intergenic
TTCACCTGAGGTTCAGGTTC+TGG 0.325601 7_1:-67516987 Msa1032560:intron
TCAAGATTCACCTGAGGTTC+AGG 0.330277 7_1:-67516993 Msa1032560:CDS
GACGGAAACGCGTGAGGTTC+TGG 0.344746 7_1:+67517135 None:intergenic
GCTGATACCTTCACCATTGA+TGG 0.346148 7_1:+67512324 None:intergenic
CGGCGGTGGTGAGAAGGGTT+GGG 0.348997 7_1:+67517176 None:intergenic
AAGAGGTGAAGGTCTTCTTC+TGG 0.355726 7_1:+67517105 None:intergenic
AGTGTTTGGCACCTGGAGTT+AGG 0.357552 7_1:-67511936 Msa1032560:three_prime_UTR
GTGCAGACTTTGACAATTAT+CGG 0.363290 7_1:-67514401 Msa1032560:CDS
GCGGCGGTGGTGAGAAGGGT+TGG 0.378634 7_1:+67517175 None:intergenic
ACTGTCCTGGGAAGTTTCAT+TGG 0.386463 7_1:+67512248 None:intergenic
GGAGAGTTTGTTGCCTGTAT+TGG 0.387083 7_1:-67514322 Msa1032560:CDS
TTTATGCCCTTGCATGGCTT+TGG 0.387458 7_1:-67512026 Msa1032560:three_prime_UTR
GTTGCAATTGTTCAAGTGTT+TGG 0.393480 7_1:-67511950 Msa1032560:three_prime_UTR
ATCTCCAGGAACGTAATTAT+GGG 0.395601 7_1:-67512135 Msa1032560:three_prime_UTR
ATGGCCGGAATGTGGGAGTT+CGG 0.396663 7_1:+67517200 None:intergenic
TGTTGAAGAGGAAATGAAAT+TGG 0.400551 7_1:+67517274 None:intergenic
GGTTGGGGATGGCCGGAATG+TGG 0.403395 7_1:+67517192 None:intergenic
CTTGAAAGGACAACTTTGCC+TGG 0.404934 7_1:-67512191 Msa1032560:exon
AAGGTACTAACTTGACGAAC+CGG 0.414480 7_1:+67517050 None:intergenic
GGCGGTGGTGAGAAGGGTTG+GGG 0.414826 7_1:+67517177 None:intergenic
AACACCCATAATTACGTTCC+TGG 0.419126 7_1:+67512131 None:intergenic
TATTGATAACTCTTCGGATA+AGG 0.421690 7_1:+67514449 None:intergenic
TCCTCCGAACTCCCACATTC+CGG 0.425268 7_1:-67517204 Msa1032560:CDS
TCCTGTGGTACTTCTTGCTC+CGG 0.427586 7_1:+67512282 None:intergenic
CTCTCAAAATTATCCAATAC+AGG 0.430687 7_1:+67514309 None:intergenic
TAACTTACCATTGGATCAAA+GGG 0.441395 7_1:+67514156 None:intergenic
TTGTTCAAGTGTTTGGCACC+TGG 0.444360 7_1:-67511943 Msa1032560:three_prime_UTR
CCTCTTAAATCCCACCGGTT+CGG 0.449999 7_1:-67517088 Msa1032560:CDS
GTCATTCTCTTTACTGTCCT+GGG 0.450604 7_1:+67512236 None:intergenic
GATGAGATAGTAGGTCTTGA+AGG 0.461337 7_1:-67514483 Msa1032560:CDS
TGGTCCAGGACCTGCAAAGC+CGG 0.475014 7_1:-67512301 Msa1032560:CDS
AGGTGGCGGCGGTGGTGAGA+AGG 0.476821 7_1:+67517170 None:intergenic
GATGATGAGGTCAGCGACGC+TGG 0.477103 7_1:-67514618 Msa1032560:CDS
CGATTGAATTTCGAGCCAAC+TGG 0.479280 7_1:+67512840 None:intergenic
CCTTTCAGAAACATGGTACC+TGG 0.480611 7_1:+67511984 None:intergenic
ATGAAATTGGTGGGAAATGA+GGG 0.480912 7_1:+67517287 None:intergenic
ACCTACTATCTCATCATCAA+TGG 0.481367 7_1:+67514491 None:intergenic
CCCTTAAAAGGAAACTTGGC+AGG 0.483349 7_1:+67512088 None:intergenic
TTGAACAATTGCAACTCACT+CGG 0.485267 7_1:+67511958 None:intergenic
TGAACAATTGCAACTCACTC+GGG 0.486245 7_1:+67511959 None:intergenic
ATTAGAAGAGGTGGCGGCGG+TGG 0.488636 7_1:+67517162 None:intergenic
GCCGGAGCAAGAAGTACCAC+AGG 0.489513 7_1:-67512283 Msa1032560:CDS
CGATAGAGACCGCCTTTCAC+TGG 0.489615 7_1:-67514370 Msa1032560:CDS
TGGAGTTGAGCCAGTGGATA+CGG 0.491468 7_1:-67514187 Msa1032560:CDS
TGAGAAGGGTTGGGGATGGC+CGG 0.493613 7_1:+67517185 None:intergenic
ATTCCCCTTAAAAGGAAACT+TGG 0.493670 7_1:+67512084 None:intergenic
TTAACTTACCATTGGATCAA+AGG 0.494416 7_1:+67514155 None:intergenic
TATCTATCAGTTTAATCTCC+AGG 0.498081 7_1:-67512149 Msa1032560:three_prime_UTR
CCGCCTCTTACGTCCATCAA+TGG 0.498736 7_1:-67512337 Msa1032560:CDS
GTTGGGGATGGCCGGAATGT+GGG 0.500157 7_1:+67517193 None:intergenic
CAGTGAAAGGCGGTCTCTAT+CGG 0.505259 7_1:+67514371 None:intergenic
CCGAACCGGTGGGATTTAAG+AGG 0.507744 7_1:+67517088 None:intergenic
GTTCGGAGGACGGTGGCCAT+CGG 0.508967 7_1:+67517217 None:intergenic
CAAGGTGGAGACAGAGGGAG+AGG 0.511028 7_1:-67514271 Msa1032560:CDS
TCGGTTCAATTCCCACTCCC+CGG 0.511973 7_1:-67517069 Msa1032560:CDS
ATTGAAATTCTAAACTCACT+TGG 0.514285 7_1:-67514207 Msa1032560:CDS
AACTTGACGAACCGGGGAGT+GGG 0.515310 7_1:+67517058 None:intergenic
TCACCATTGATGGACGTAAG+AGG 0.516147 7_1:+67512334 None:intergenic
ATACTTCAAGAATTCAGAAA+GGG 0.518433 7_1:-67512375 Msa1032560:CDS
GGTGGCGGCGGTGGTGAGAA+GGG 0.521742 7_1:+67517171 None:intergenic
AGAAACAGAGTCCGCTTGAA+AGG 0.521889 7_1:-67512205 Msa1032560:exon
AATACTATCAGAGGTGAAGC+AGG 0.523830 7_1:+67514588 None:intergenic
GTGGTGAGAAGGGTTGGGGA+TGG 0.524363 7_1:+67517181 None:intergenic
AGGTACTAACTTGACGAACC+GGG 0.524465 7_1:+67517051 None:intergenic
GAGAGCTAAAGCTCAGATCA+AGG 0.525781 7_1:-67514289 Msa1032560:CDS
TGCAGTCAAAGTTGCTGAGT+TGG 0.525898 7_1:-67514529 Msa1032560:CDS
TACAGATGGTGCTGCTGATG+TGG 0.527477 7_1:-67514655 Msa1032560:CDS
GTATCTCCGTCAAAAGCAAA+AGG 0.528487 7_1:+67517031 None:intergenic
TGGAAGTCCCTTTGATCCAA+TGG 0.531419 7_1:-67514163 Msa1032560:intron
CACTGGTCACAAATGCTCAA+GGG 0.535412 7_1:-67514353 Msa1032560:CDS
AATGAAATTGGTGGGAAATG+AGG 0.537988 7_1:+67517286 None:intergenic
TAACTTGACGAACCGGGGAG+TGG 0.538642 7_1:+67517057 None:intergenic
GAGTGGGAATTGAACCGAAC+CGG 0.540147 7_1:+67517074 None:intergenic
CTTACCAGAACCTGAACCTC+AGG 0.544704 7_1:+67516983 None:intergenic
CATACTTCAAGAATTCAGAA+AGG 0.546520 7_1:-67512376 Msa1032560:CDS
CCAGGTACCATGTTTCTGAA+AGG 0.546524 7_1:-67511984 Msa1032560:three_prime_UTR
GTGAAGGTATCAGCTGGTCC+AGG 0.550393 7_1:-67512315 Msa1032560:CDS
GTGGCCATCGGAAGAAGATA+AGG 0.551051 7_1:+67517229 None:intergenic
GATTCTGATGAATTTGAAGA+TGG 0.552865 7_1:-67512402 Msa1032560:CDS
ATCTTGAACTTGAGGTGCCT+CGG 0.553813 7_1:+67517009 None:intergenic
GAGCATTTGTGACCAGTGAA+AGG 0.557793 7_1:+67514358 None:intergenic
TCCATTGATGATGAGATAGT+AGG 0.558085 7_1:-67514492 Msa1032560:CDS
TCAGGTGAATCTTGAACTTG+AGG 0.558414 7_1:+67517001 None:intergenic
CTTACCTTATCTTCTTCCGA+TGG 0.561511 7_1:-67517233 Msa1032560:exon
AGATAAGGTAAGGTGGCGAT+TGG 0.562247 7_1:+67517244 None:intergenic
ATGCAGGGGCGCAAACCAGT+TGG 0.567238 7_1:-67512855 Msa1032560:intron
TCACTGGTCACAAATGCTCA+AGG 0.568684 7_1:-67514354 Msa1032560:CDS
GGCAAAGTTGTCCTTTCAAG+CGG 0.568729 7_1:+67512194 None:intergenic
GAATGTGGGAGTTCGGAGGA+CGG 0.572182 7_1:+67517207 None:intergenic
CGGTGGGATTTAAGAGGTGA+AGG 0.573354 7_1:+67517094 None:intergenic
ACACTGATTCTCCTAACTCC+AGG 0.573651 7_1:+67511925 None:intergenic
TGGGAATTGAACCGAACCGG+TGG 0.574334 7_1:+67517077 None:intergenic
TTGGTGACTTGTTCTTCCTG+TGG 0.575510 7_1:+67512267 None:intergenic
CAGATCAAGGTGGAGACAGA+GGG 0.576696 7_1:-67514276 Msa1032560:CDS
ATGAGATAGTAGGTCTTGAA+GGG 0.578111 7_1:-67514482 Msa1032560:CDS
GGAGAGTACAGGCGATGATG+AGG 0.580094 7_1:-67514631 Msa1032560:CDS
TCTTCTTCTGGAGGATGCGA+CGG 0.580174 7_1:+67517117 None:intergenic
ACTTGTACAAAACTGAATCC+AGG 0.580787 7_1:+67512173 None:intergenic
TCAGATCAAGGTGGAGACAG+AGG 0.582701 7_1:-67514277 Msa1032560:CDS
ATATCTACCAAAGCCATGCA+AGG 0.584445 7_1:+67512019 None:intergenic
CATCGGAAGAAGATAAGGTA+AGG 0.589405 7_1:+67517234 None:intergenic
GTTGAGCCAGTGGATACGGT+TGG 0.590743 7_1:-67514183 Msa1032560:CDS
GGACTTCCAACCGTATCCAC+TGG 0.596990 7_1:+67514177 None:intergenic
TCAATGGTGAAGGTATCAGC+TGG 0.597135 7_1:-67512321 Msa1032560:CDS
CTTCACCTCTTAAATCCCAC+CGG 0.598298 7_1:-67517093 Msa1032560:CDS
GCTGATGTGGAGGAGAGTAC+AGG 0.601575 7_1:-67514642 Msa1032560:CDS
GACTGAAGTAATACTATCAG+AGG 0.601933 7_1:+67514579 None:intergenic
AAATGCTCAAGGGGAAGTTG+TGG 0.607604 7_1:-67514343 Msa1032560:CDS
GGTTCTGGAGTGATTAGAAG+AGG 0.608963 7_1:+67517150 None:intergenic
AAAGATCGAAAACTAAGGAT+CGG 0.611204 7_1:-67514423 Msa1032560:CDS
ATTGGCGAATTGTGTTGAAG+AGG 0.611554 7_1:+67517262 None:intergenic
GTGATTAGAAGAGGTGGCGG+CGG 0.615055 7_1:+67517159 None:intergenic
AGTCACCAATGAAACTTCCC+AGG 0.615111 7_1:-67512253 Msa1032560:CDS
CGAGTGTTAATGTTAAGCTG+TGG 0.617060 7_1:+67511780 None:intergenic
GGAGTGATTAGAAGAGGTGG+CGG 0.618399 7_1:+67517156 None:intergenic
ACTGGTCACAAATGCTCAAG+GGG 0.619416 7_1:-67514352 Msa1032560:CDS
CTTACGTCCATCAATGGTGA+AGG 0.622403 7_1:-67512331 Msa1032560:CDS
CTTTCAGAAACATGGTACCT+GGG 0.628287 7_1:+67511985 None:intergenic
ATTCAACAGGACTCTACAGA+TGG 0.628787 7_1:-67514669 Msa1032560:intron
TGAAGAGGAAATGAAATTGG+TGG 0.633608 7_1:+67517277 None:intergenic
GCCGGAATGTGGGAGTTCGG+AGG 0.636031 7_1:+67517203 None:intergenic
TCTGGAGTGATTAGAAGAGG+TGG 0.641074 7_1:+67517153 None:intergenic
CTCACTTGGAGTTGAGCCAG+TGG 0.641190 7_1:-67514193 Msa1032560:CDS
CGGAAGAAGATAAGGTAAGG+TGG 0.641744 7_1:+67517237 None:intergenic
TGTGGGAGTTCGGAGGACGG+TGG 0.642626 7_1:+67517210 None:intergenic
TCGGGGTCCTTTCAGAAACA+TGG 0.644196 7_1:+67511977 None:intergenic
GGATGCGACGGAAACGCGTG+AGG 0.644324 7_1:+67517129 None:intergenic
AGATGGTGCTGCTGATGTGG+AGG 0.644434 7_1:-67514652 Msa1032560:CDS
GAAGAGGAAATGAAATTGGT+GGG 0.646373 7_1:+67517278 None:intergenic
AGGTGAAGGTCTTCTTCTGG+AGG 0.646515 7_1:+67517108 None:intergenic
ACATGAAGCAATTATGCGTG+AGG 0.649725 7_1:-67512424 Msa1032560:CDS
GAACAATTGCAACTCACTCG+GGG 0.651509 7_1:+67511960 None:intergenic
TATCTACCAAAGCCATGCAA+GGG 0.656555 7_1:+67512020 None:intergenic
GGTACTAACTTGACGAACCG+GGG 0.661706 7_1:+67517052 None:intergenic
GGGAATTGAACCGAACCGGT+GGG 0.665597 7_1:+67517078 None:intergenic
CAGGACAGTAAAGAGAATGA+CGG 0.668315 7_1:-67512234 Msa1032560:CDS
CATTTGTGACCAGTGAAAGG+CGG 0.686573 7_1:+67514361 None:intergenic
CCATTGATGGACGTAAGAGG+CGG 0.691889 7_1:+67512337 None:intergenic
TCAAGTTCAAGATTCACCTG+AGG 0.703232 7_1:-67516999 Msa1032560:CDS
AGCTAAAGCTCAGATCAAGG+TGG 0.719934 7_1:-67514286 Msa1032560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAAGAAAAATAAAAAA+TGG + chr7_1:67512877-67512896 None:intergenic 10.0%
!! AAATTAAAGTATAGAAATAT+TGG + chr7_1:67513072-67513091 None:intergenic 10.0%
!!! TTTTTATTTTTTTGTTTGTT+TGG - chr7_1:67514326-67514345 Msa1032560:CDS 10.0%
!!! TTTTATTTTTTTGTTTGTTT+GGG - chr7_1:67514327-67514346 Msa1032560:CDS 10.0%
!!! ATATTGTTGTTTTTATTGAT+TGG - chr7_1:67512749-67512768 Msa1032560:intron 15.0%
!! AAAGAAAAATAAAAAATGGA+GGG + chr7_1:67512873-67512892 None:intergenic 15.0%
!! AAAAGAAAAATAAAAAATGG+AGG + chr7_1:67512874-67512893 None:intergenic 15.0%
!!! TTCTAAAACATCAAATATTT+TGG + chr7_1:67512922-67512941 None:intergenic 15.0%
!! AAACATCAAAAGATAAAAAA+CGG - chr7_1:67513118-67513137 Msa1032560:intron 15.0%
!! AAAATCTTGTAATTTATATG+TGG + chr7_1:67513804-67513823 None:intergenic 15.0%
!!! ACATATAAATTACAAGATTT+TGG - chr7_1:67513803-67513822 Msa1032560:intron 15.0%
!!! ATATACAAACACAATAATTT+TGG + chr7_1:67514019-67514038 None:intergenic 15.0%
!!! ATTTAAAATGTCTCTAAATT+AGG + chr7_1:67514097-67514116 None:intergenic 15.0%
!!! TTTATTTTTTTGTTTGTTTG+GGG - chr7_1:67514328-67514347 Msa1032560:CDS 15.0%
!!! ATTTTTTATTAACTTACCAT+TGG + chr7_1:67514928-67514947 None:intergenic 15.0%
!!! GTCTTTTAATAAAACTTTAA+GGG + chr7_1:67515033-67515052 None:intergenic 15.0%
!!! TGTCTTTTAATAAAACTTTA+AGG + chr7_1:67515034-67515053 None:intergenic 15.0%
!! ATCAATCATGAAATAATTAA+GGG + chr7_1:67515093-67515112 None:intergenic 15.0%
!!! TTTTTTTTGTATGGAAAATA+TGG - chr7_1:67515238-67515257 Msa1032560:intron 15.0%
!!! AATAGATGATTAGTAATTTT+TGG - chr7_1:67515439-67515458 Msa1032560:intron 15.0%
!!! TTTCATATTCATAGTTTTTT+GGG - chr7_1:67515699-67515718 Msa1032560:intron 15.0%
!!! TAATGTTTTTTCTAAACTAA+AGG - chr7_1:67515804-67515823 Msa1032560:intron 15.0%
!!! AATGTTTTTTCTAAACTAAA+GGG - chr7_1:67515805-67515824 Msa1032560:intron 15.0%
!!! AAATTTCTTTTTTTTGCAAA+TGG - chr7_1:67515930-67515949 Msa1032560:intron 15.0%
!! TAAGACAATGTAAATATAAA+AGG + chr7_1:67515971-67515990 None:intergenic 15.0%
!! AAATTATCTAAAAAATTCGT+TGG + chr7_1:67517258-67517277 None:intergenic 15.0%
!! CATAGTTGTTAATTAGAAAA+AGG - chr7_1:67512216-67512235 Msa1032560:CDS 20.0%
!! ACAAACAATAGCAAAAAATA+CGG + chr7_1:67512577-67512596 None:intergenic 20.0%
!! TTTGTAATTAAAACAGACAA+TGG - chr7_1:67512642-67512661 Msa1032560:intron 20.0%
!! ACCGAAAAAATTAAAATCAA+AGG - chr7_1:67512666-67512685 Msa1032560:intron 20.0%
!!! CCCTTTGATTTTAATTTTTT+CGG + chr7_1:67512670-67512689 None:intergenic 20.0%
!! CCGAAAAAATTAAAATCAAA+GGG - chr7_1:67512667-67512686 Msa1032560:intron 20.0%
!! CGAAAAAATTAAAATCAAAG+GGG - chr7_1:67512668-67512687 Msa1032560:intron 20.0%
!! GAAAAAATTAAAATCAAAGG+GGG - chr7_1:67512669-67512688 Msa1032560:intron 20.0%
!!! CATGGTTTAAATTTTGAATT+GGG - chr7_1:67512805-67512824 Msa1032560:intron 20.0%
!! ATAGAAATATTGGTATGTAT+TGG + chr7_1:67513062-67513081 None:intergenic 20.0%
!!! ATTAAAATGACTTCTTTTTC+TGG - chr7_1:67513195-67513214 Msa1032560:intron 20.0%
!!! TTATAGAACTACAAAGTTTT+AGG - chr7_1:67513604-67513623 Msa1032560:intron 20.0%
!! AAAATGAATACAACAATTTG+TGG + chr7_1:67513842-67513861 None:intergenic 20.0%
!!! CAATAATTTTGGCAAAAAAA+CGG + chr7_1:67514008-67514027 None:intergenic 20.0%
!!! CTGTTAAATTTTATATCTTC+CGG - chr7_1:67514149-67514168 Msa1032560:intron 20.0%
!!! TGTTAGTATTATTTTGTTGT+TGG - chr7_1:67514258-67514277 Msa1032560:CDS 20.0%
!!! TTTTTCTATTGATAACTCTT+CGG + chr7_1:67514632-67514651 None:intergenic 20.0%
!! TATATAGAAAGAAAGAAAGA+AGG + chr7_1:67514979-67514998 None:intergenic 20.0%
!!! TTTTAATAAAACTTTAAGGG+AGG + chr7_1:67515030-67515049 None:intergenic 20.0%
!! CATCAATCATGAAATAATTA+AGG + chr7_1:67515094-67515113 None:intergenic 20.0%
!!! GAAAAAATTAAAACGACTTT+TGG + chr7_1:67515164-67515183 None:intergenic 20.0%
!! AATGATTACTTCATATGTAT+GGG + chr7_1:67515308-67515327 None:intergenic 20.0%
!! TAATGATTACTTCATATGTA+TGG + chr7_1:67515309-67515328 None:intergenic 20.0%
!! ATACATATGAAGTAATCATT+AGG - chr7_1:67515308-67515327 Msa1032560:intron 20.0%
!! CAAAAAACTATGAATATGAA+AGG + chr7_1:67515700-67515719 None:intergenic 20.0%
!!! CTTTCATATTCATAGTTTTT+TGG - chr7_1:67515698-67515717 Msa1032560:intron 20.0%
!!! ATGTTTTTTCTAAACTAAAG+GGG - chr7_1:67515806-67515825 Msa1032560:intron 20.0%
!!! GTTAAAGAATTATTTTCAGT+TGG - chr7_1:67516453-67516472 Msa1032560:intron 20.0%
!!! TCTAGTGAATTTTTGTTTTG+TGG - chr7_1:67512115-67512134 Msa1032560:three_prime_UTR 25.0%
! AACAAATTGGATACTAGAAA+AGG - chr7_1:67512617-67512636 Msa1032560:intron 25.0%
!! GCATGGTTTAAATTTTGAAT+TGG - chr7_1:67512804-67512823 Msa1032560:intron 25.0%
!!! ATGTGAGTTGATCATAAATA+AGG - chr7_1:67513026-67513045 Msa1032560:intron 25.0%
! ATCAAAAGATAAAAAACGGA+GGG - chr7_1:67513122-67513141 Msa1032560:intron 25.0%
! ATCTCTAGTCTCTATTTAAT+GGG - chr7_1:67513433-67513452 Msa1032560:intron 25.0%
! TAATTCCAATTGGAATTTCT+AGG + chr7_1:67513587-67513606 None:intergenic 25.0%
!! TGTAGTTCTATAATTCCAAT+TGG + chr7_1:67513597-67513616 None:intergenic 25.0%
! TAAAAGAAACCAAGTTACAA+GGG - chr7_1:67513634-67513653 Msa1032560:intron 25.0%
! TCATTGTATACTTTCTTTCA+AGG + chr7_1:67513924-67513943 None:intergenic 25.0%
!! AGAAAGTATACAATGATGTT+TGG - chr7_1:67513928-67513947 Msa1032560:intron 25.0%
!!! ATTTTGAGTAACTCAAACAA+AGG - chr7_1:67514179-67514198 Msa1032560:CDS 25.0%
!!! TATTATTTTGTTGTTGGTGT+TGG - chr7_1:67514264-67514283 Msa1032560:CDS 25.0%
! TAGAAAAAGATCGAAAACTA+AGG - chr7_1:67514644-67514663 Msa1032560:CDS 25.0%
! ATTGAAATTCTAAACTCACT+TGG - chr7_1:67514865-67514884 Msa1032560:intron 25.0%
!!! AATGTTTTTTCCAAACTAGA+GGG + chr7_1:67515065-67515084 None:intergenic 25.0%
!!! TAATGTTTTTTCCAAACTAG+AGG + chr7_1:67515066-67515085 None:intergenic 25.0%
! AATCATGAAATAATTAAGGG+AGG + chr7_1:67515090-67515109 None:intergenic 25.0%
!! TACAAAAAAAACAGAAGCAT+TGG + chr7_1:67515229-67515248 None:intergenic 25.0%
!!! ATGCTTCTGTTTTTTTTGTA+TGG - chr7_1:67515229-67515248 Msa1032560:intron 25.0%
! ATCATTAGGCAACATAAAAA+TGG - chr7_1:67515322-67515341 Msa1032560:intron 25.0%
!!! TAAAAGTATTTCACTTCTCA+AGG - chr7_1:67515383-67515402 Msa1032560:intron 25.0%
!!! TTTTAATGGTTACTTTTGAC+AGG + chr7_1:67515544-67515563 None:intergenic 25.0%
! TAGTTAACAGTGTTAATCTA+AGG - chr7_1:67515776-67515795 Msa1032560:intron 25.0%
! AGTTAACAGTGTTAATCTAA+GGG - chr7_1:67515777-67515796 Msa1032560:intron 25.0%
!!! TGTTTTTTCTAAACTAAAGG+GGG - chr7_1:67515807-67515826 Msa1032560:intron 25.0%
!! TGTCTTTTAATAAAACCTCA+AGG - chr7_1:67515836-67515855 Msa1032560:intron 25.0%
!! GTCTTTTAATAAAACCTCAA+GGG - chr7_1:67515837-67515856 Msa1032560:intron 25.0%
! TCAAAATCTTATTATCATGC+AGG - chr7_1:67515877-67515896 Msa1032560:intron 25.0%
! GAAATTTATCAGCTTCATTA+CGG + chr7_1:67515917-67515936 None:intergenic 25.0%
! GACAAAAATTATACTTCAGA+AGG + chr7_1:67516079-67516098 None:intergenic 25.0%
!!! TAAGAGATTTTTCAGAGAAT+GGG + chr7_1:67516128-67516147 None:intergenic 25.0%
!!! TTAAGAGATTTTTCAGAGAA+TGG + chr7_1:67516129-67516148 None:intergenic 25.0%
! AAAATATAAACGAAAGAGGT+CGG + chr7_1:67516171-67516190 None:intergenic 25.0%
!! ACCTCTTTCGTTTATATTTT+TGG - chr7_1:67516171-67516190 Msa1032560:intron 25.0%
! TATTCTTATACACATTTGTG+AGG + chr7_1:67516417-67516436 None:intergenic 25.0%
! TTACACGTTTCTTAAGATAT+AGG - chr7_1:67516566-67516585 Msa1032560:intron 25.0%
! ATACTTCAAGAATTCAGAAA+GGG - chr7_1:67516697-67516716 Msa1032560:intron 25.0%
! TAATACTAATTCCCCTTAAA+AGG + chr7_1:67516999-67517018 None:intergenic 25.0%
! CTCATAATTTCTGTATTCTT+TGG - chr7_1:67517201-67517220 Msa1032560:CDS 25.0%
TGTTGAAGAGGAAATGAAAT+TGG + chr7_1:67511801-67511820 None:intergenic 30.0%
!! TTAGTACCTTTTGCTTTTGA+CGG - chr7_1:67512035-67512054 Msa1032560:three_prime_UTR 30.0%
TCAACTATTACGTTAAGCTT+TGG - chr7_1:67512280-67512299 Msa1032560:CDS 30.0%
!!! CAGTAGTTTTGAATTTTGCT+TGG - chr7_1:67512312-67512331 Msa1032560:CDS 30.0%
TTGATATTGCGACAAATAGT+AGG - chr7_1:67512426-67512445 Msa1032560:CDS 30.0%
TGATATTGCGACAAATAGTA+GGG - chr7_1:67512427-67512446 Msa1032560:CDS 30.0%
ATCGAGAACAAGAAACAAAT+TGG - chr7_1:67512604-67512623 Msa1032560:intron 30.0%
! TTTTCAACAAGGGTAAACTT+GGG + chr7_1:67512960-67512979 None:intergenic 30.0%
!! TTTTTCAACAAGGGTAAACT+TGG + chr7_1:67512961-67512980 None:intergenic 30.0%
!! TATGGTGTGTTTTTCAACAA+GGG + chr7_1:67512970-67512989 None:intergenic 30.0%
!! TTATGGTGTGTTTTTCAACA+AGG + chr7_1:67512971-67512990 None:intergenic 30.0%
ACACACCATAAAACTATTCA+AGG - chr7_1:67512980-67512999 Msa1032560:intron 30.0%
!! CAACTCCTTGAATAGTTTTA+TGG + chr7_1:67512988-67513007 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG + chr7_1:67513111-67513130 None:intergenic 30.0%
CATCAAAAGATAAAAAACGG+AGG - chr7_1:67513121-67513140 Msa1032560:intron 30.0%
TGTTAGTAAAGAGTAGAGAA+GGG - chr7_1:67513151-67513170 Msa1032560:intron 30.0%
! GCTTGTTTGAACTTGATTTT+TGG - chr7_1:67513304-67513323 Msa1032560:intron 30.0%
CATCTCTAGTCTCTATTTAA+TGG - chr7_1:67513432-67513451 Msa1032560:intron 30.0%
AGTCTCTATTTAATGGGAAA+AGG - chr7_1:67513439-67513458 Msa1032560:intron 30.0%
! TCTTTGGGTTAACTTATTAC+AGG + chr7_1:67513552-67513571 None:intergenic 30.0%
! AATTGGAATTTCTAGGAGAT+TGG + chr7_1:67513580-67513599 None:intergenic 30.0%
AATCTCCTAGAAATTCCAAT+TGG - chr7_1:67513579-67513598 Msa1032560:intron 30.0%
! CTTGTAACTTGGTTTCTTTT+AGG + chr7_1:67513635-67513654 None:intergenic 30.0%
CTAAAAGAAACCAAGTTACA+AGG - chr7_1:67513633-67513652 Msa1032560:intron 30.0%
TATATGTGGTTTCTGTCTAT+GGG + chr7_1:67513790-67513809 None:intergenic 30.0%
TTATATGTGGTTTCTGTCTA+TGG + chr7_1:67513791-67513810 None:intergenic 30.0%
AGTTCAAGTAAACTTATGGA+GGG + chr7_1:67513889-67513908 None:intergenic 30.0%
AGAGAGTTCAAGTAAACTTA+TGG + chr7_1:67513893-67513912 None:intergenic 30.0%
! GAGATACAATGATAACGATA+GGG + chr7_1:67514066-67514085 None:intergenic 30.0%
! AGAGATACAATGATAACGAT+AGG + chr7_1:67514067-67514086 None:intergenic 30.0%
GTTACTCAAAATTCAAATGC+CGG + chr7_1:67514171-67514190 None:intergenic 30.0%
ACTCAAACAAAGGAAATAGT+TGG - chr7_1:67514189-67514208 Msa1032560:CDS 30.0%
CTCAAACAAAGGAAATAGTT+GGG - chr7_1:67514190-67514209 Msa1032560:CDS 30.0%
! TATTGATAACTCTTCGGATA+AGG + chr7_1:67514626-67514645 None:intergenic 30.0%
AAAGATCGAAAACTAAGGAT+CGG - chr7_1:67514649-67514668 Msa1032560:CDS 30.0%
CTCTCAAAATTATCCAATAC+AGG + chr7_1:67514766-67514785 None:intergenic 30.0%
TAACTTACCATTGGATCAAA+GGG + chr7_1:67514919-67514938 None:intergenic 30.0%
TTAACTTACCATTGGATCAA+AGG + chr7_1:67514920-67514939 None:intergenic 30.0%
!!! ATGTTTTTTCCAAACTAGAG+GGG + chr7_1:67515064-67515083 None:intergenic 30.0%
TTTGTATGGAAAATATGGTC+TGG - chr7_1:67515243-67515262 Msa1032560:intron 30.0%
GCTTGACATGTACAAAATTA+AGG + chr7_1:67515362-67515381 None:intergenic 30.0%
!!! AGCGTGATGTTGATTTTTAA+TGG + chr7_1:67515504-67515523 None:intergenic 30.0%
AAAAATCAACATCACGCTTT+CGG - chr7_1:67515506-67515525 Msa1032560:intron 30.0%
GTAACCATTAAAAACGAGAA+CGG - chr7_1:67515551-67515570 Msa1032560:intron 30.0%
TGTTTGTATGAGATTAAGCA+AGG - chr7_1:67515605-67515624 Msa1032560:intron 30.0%
TTTGGGAGAAAAAGCAAATT+AGG - chr7_1:67515716-67515735 Msa1032560:intron 30.0%
TTGGGAGAAAAAGCAAATTA+GGG - chr7_1:67515717-67515736 Msa1032560:intron 30.0%
TATATGTTAGAGCTAAGTAC+TGG - chr7_1:67515740-67515759 Msa1032560:intron 30.0%
! TTTTAATAAAACCTCAAGGG+AGG - chr7_1:67515840-67515859 Msa1032560:intron 30.0%
TACCTGTCTTTCAATATTGT+TGG - chr7_1:67515992-67516011 Msa1032560:intron 30.0%
GCCAAAAATATAAACGAAAG+AGG + chr7_1:67516175-67516194 None:intergenic 30.0%
TGTCATCTATGATTTATGCA+GGG - chr7_1:67516202-67516221 Msa1032560:intron 30.0%
ACACTATATCAAGTTTCTTC+AGG - chr7_1:67516277-67516296 Msa1032560:intron 30.0%
!! TAAGAGTTAAAAGTGTTTCC+AGG + chr7_1:67516314-67516333 None:intergenic 30.0%
GATTCTGATGAATTTGAAGA+TGG - chr7_1:67516670-67516689 Msa1032560:intron 30.0%
CATACTTCAAGAATTCAGAA+AGG - chr7_1:67516696-67516715 Msa1032560:intron 30.0%
!!! TTCAGAAAGGGTTTTAAACT+TGG - chr7_1:67516709-67516728 Msa1032560:intron 30.0%
TATCTATCAGTTTAATCTCC+AGG - chr7_1:67516923-67516942 Msa1032560:intron 30.0%
! AGATATGACTATATTTTCCC+AGG - chr7_1:67517070-67517089 Msa1032560:CDS 30.0%
ATGAAATTGGTGGGAAATGA+GGG + chr7_1:67511788-67511807 None:intergenic 35.0%
AATGAAATTGGTGGGAAATG+AGG + chr7_1:67511789-67511808 None:intergenic 35.0%
GAAGAGGAAATGAAATTGGT+GGG + chr7_1:67511797-67511816 None:intergenic 35.0%
TGAAGAGGAAATGAAATTGG+TGG + chr7_1:67511798-67511817 None:intergenic 35.0%
!!! GTGTCACTTATTTTCAGACA+TGG - chr7_1:67512376-67512395 Msa1032560:CDS 35.0%
CGGTATAACAACTACAATTG+TGG + chr7_1:67512470-67512489 None:intergenic 35.0%
TTGTAGTTGTTATACCGTTG+CGG - chr7_1:67512473-67512492 Msa1032560:intron 35.0%
! CAGACTGCAATTTAAAACCA+TGG - chr7_1:67512536-67512555 Msa1032560:intron 35.0%
! GGAAAACAAGTTGAAAACCA+TGG + chr7_1:67512556-67512575 None:intergenic 35.0%
!!! AAGGGGGAATTTGTTTTTTC+TGG - chr7_1:67512685-67512704 Msa1032560:intron 35.0%
ATTGGCTATCATGTAGTGTA+AGG - chr7_1:67512767-67512786 Msa1032560:intron 35.0%
ACTCACATGTGATAAGCTAA+AGG + chr7_1:67513014-67513033 None:intergenic 35.0%
CTGTTAGTAAAGAGTAGAGA+AGG - chr7_1:67513150-67513169 Msa1032560:intron 35.0%
! TTAATGGGAAAAGGCTTTGA+TGG - chr7_1:67513448-67513467 Msa1032560:intron 35.0%
CAAGGACTTATGATGCTAAT+GGG + chr7_1:67513705-67513724 None:intergenic 35.0%
CATTAGCATCATAAGTCCTT+GGG - chr7_1:67513704-67513723 Msa1032560:intron 35.0%
ATTAGCATCATAAGTCCTTG+GGG - chr7_1:67513705-67513724 Msa1032560:intron 35.0%
GAGTTCAAGTAAACTTATGG+AGG + chr7_1:67513890-67513909 None:intergenic 35.0%
GGAAAAGATATTGAGAGAGA+TGG + chr7_1:67513987-67514006 None:intergenic 35.0%
CCAGCAAATTAACACAAACA+AGG + chr7_1:67514376-67514395 None:intergenic 35.0%
!! CCTTGTTTGTGTTAATTTGC+TGG - chr7_1:67514373-67514392 Msa1032560:CDS 35.0%
GACTGAAGTAATACTATCAG+AGG + chr7_1:67514496-67514515 None:intergenic 35.0%
!! TCCATTGATGATGAGATAGT+AGG - chr7_1:67514580-67514599 Msa1032560:CDS 35.0%
ACCTACTATCTCATCATCAA+TGG + chr7_1:67514584-67514603 None:intergenic 35.0%
ATGAGATAGTAGGTCTTGAA+GGG - chr7_1:67514590-67514609 Msa1032560:CDS 35.0%
GTGCAGACTTTGACAATTAT+CGG - chr7_1:67514671-67514690 Msa1032560:intron 35.0%
!!! TGTTTTTTCCAAACTAGAGG+GGG + chr7_1:67515063-67515082 None:intergenic 35.0%
TAACAGCTGTTAGTGTCTAT+GGG + chr7_1:67515125-67515144 None:intergenic 35.0%
!! ATACAGCTAAAGCATTGTAG+TGG - chr7_1:67515475-67515494 Msa1032560:intron 35.0%
!!! AATGGTTACTTTTGACAGGA+AGG + chr7_1:67515540-67515559 None:intergenic 35.0%
!! CATTCCGTTCTCGTTTTTAA+TGG + chr7_1:67515558-67515577 None:intergenic 35.0%
CATTAAAAACGAGAACGGAA+TGG - chr7_1:67515556-67515575 Msa1032560:intron 35.0%
TTTGGTGGAAAACTGATGAA+AGG - chr7_1:67515664-67515683 Msa1032560:intron 35.0%
TAACAGTGTTAATCTAAGGG+AGG - chr7_1:67515780-67515799 Msa1032560:intron 35.0%
! TTGTTGGCGATCAATGTTTT+TGG - chr7_1:67516008-67516027 Msa1032560:intron 35.0%
CTGTCATCTATGATTTATGC+AGG - chr7_1:67516201-67516220 Msa1032560:intron 35.0%
GTCATCTATGATTTATGCAG+GGG - chr7_1:67516203-67516222 Msa1032560:intron 35.0%
CATTCTTAAACTCACCAAGT+TGG + chr7_1:67516358-67516377 None:intergenic 35.0%
ACTGCCTCAAATGAAACATT+TGG - chr7_1:67516516-67516535 Msa1032560:intron 35.0%
AGCACCAAATGTTTCATTTG+AGG + chr7_1:67516523-67516542 None:intergenic 35.0%
!! CAAATGAAACATTTGGTGCT+TGG - chr7_1:67516523-67516542 Msa1032560:intron 35.0%
ACTTGTACAAAACTGAATCC+AGG + chr7_1:67516902-67516921 None:intergenic 35.0%
AATCTCCAGGAACGTAATTA+TGG - chr7_1:67516936-67516955 Msa1032560:intron 35.0%
ATCTCCAGGAACGTAATTAT+GGG - chr7_1:67516937-67516956 Msa1032560:intron 35.0%
ATTCCCCTTAAAAGGAAACT+TGG + chr7_1:67516991-67517010 None:intergenic 35.0%
TTGAACAATTGCAACTCACT+CGG + chr7_1:67517117-67517136 None:intergenic 35.0%
GTTGCAATTGTTCAAGTGTT+TGG - chr7_1:67517122-67517141 Msa1032560:CDS 35.0%
ATTGGCGAATTGTGTTGAAG+AGG + chr7_1:67511813-67511832 None:intergenic 40.0%
CATCGGAAGAAGATAAGGTA+AGG + chr7_1:67511841-67511860 None:intergenic 40.0%
CTTACCTTATCTTCTTCCGA+TGG - chr7_1:67511839-67511858 Msa1032560:three_prime_UTR 40.0%
! AAGGTACTAACTTGACGAAC+CGG + chr7_1:67512025-67512044 None:intergenic 40.0%
GTATCTCCGTCAAAAGCAAA+AGG + chr7_1:67512044-67512063 None:intergenic 40.0%
TCAGGTGAATCTTGAACTTG+AGG + chr7_1:67512074-67512093 None:intergenic 40.0%
TCAAGTTCAAGATTCACCTG+AGG - chr7_1:67512073-67512092 Msa1032560:three_prime_UTR 40.0%
TGTAGTTGTTATACCGTTGC+GGG - chr7_1:67512474-67512493 Msa1032560:intron 40.0%
CAATCGCGGCTGTAATATAA+AGG + chr7_1:67512510-67512529 None:intergenic 40.0%
TGAATTGGGTGTAGAAGTGA+TGG - chr7_1:67512819-67512838 Msa1032560:CDS 40.0%
GTCCTGTAAAGAAGACAGTT+TGG - chr7_1:67513225-67513244 Msa1032560:intron 40.0%
AGCCAAACTGTCTTCTTTAC+AGG + chr7_1:67513230-67513249 None:intergenic 40.0%
!!! TTTTTTGTCAGCTTCTCGAG+AGG + chr7_1:67513510-67513529 None:intergenic 40.0%
!! AGGAGATTGGAAGCATCTTT+GGG + chr7_1:67513567-67513586 None:intergenic 40.0%
!! TAGGAGATTGGAAGCATCTT+TGG + chr7_1:67513568-67513587 None:intergenic 40.0%
AGTGCTAAGGATTACGATTC+AGG + chr7_1:67513667-67513686 None:intergenic 40.0%
CCAAGGACTTATGATGCTAA+TGG + chr7_1:67513706-67513725 None:intergenic 40.0%
CCATTAGCATCATAAGTCCT+TGG - chr7_1:67513703-67513722 Msa1032560:intron 40.0%
TTAGCATCATAAGTCCTTGG+GGG - chr7_1:67513706-67513725 Msa1032560:intron 40.0%
TCTGTAGAGTCCTGTTGAAT+TGG + chr7_1:67514403-67514422 None:intergenic 40.0%
ATTCAACAGGACTCTACAGA+TGG - chr7_1:67514403-67514422 Msa1032560:CDS 40.0%
AATACTATCAGAGGTGAAGC+AGG + chr7_1:67514487-67514506 None:intergenic 40.0%
GATGAGATAGTAGGTCTTGA+AGG - chr7_1:67514589-67514608 Msa1032560:CDS 40.0%
AACAGCTGTTAGTGTCTATG+GGG + chr7_1:67515124-67515143 None:intergenic 40.0%
GTAACAGCTGTTAGTGTCTA+TGG + chr7_1:67515126-67515145 None:intergenic 40.0%
AGAGTTGAAGAGACGAACAT+TGG + chr7_1:67515186-67515205 None:intergenic 40.0%
TATGGTCTGGTCAAAATCCT+CGG - chr7_1:67515256-67515275 Msa1032560:intron 40.0%
AGTATTTCACTTCTCAAGGC+AGG - chr7_1:67515387-67515406 Msa1032560:intron 40.0%
CTTCTCAAGGCAGGAAAAAA+TGG - chr7_1:67515396-67515415 Msa1032560:intron 40.0%
AACGGAATGGTTCAGTACAA+GGG - chr7_1:67515569-67515588 Msa1032560:intron 40.0%
TTAAGCAAGGTGTAAGAGAC+AGG - chr7_1:67515618-67515637 Msa1032560:intron 40.0%
AAGGTGTAAGAGACAGGTAA+TGG - chr7_1:67515624-67515643 Msa1032560:intron 40.0%
GTGGAAAACTGATGAAAGGT+CGG - chr7_1:67515668-67515687 Msa1032560:intron 40.0%
!! TAGAGCTAAGTACTGGATGT+AGG - chr7_1:67515747-67515766 Msa1032560:intron 40.0%
CGCCAACAATATTGAAAGAC+AGG + chr7_1:67515997-67516016 None:intergenic 40.0%
!!! TTGGCGATCAATGTTTTTGG+TGG - chr7_1:67516011-67516030 Msa1032560:intron 40.0%
!! AAAAGTGTTTCCAGGTCTTC+AGG + chr7_1:67516306-67516325 None:intergenic 40.0%
TGTCAGAGTCGAGAAAAAGT+AGG - chr7_1:67516378-67516397 Msa1032560:intron 40.0%
ACATGAAGCAATTATGCGTG+AGG - chr7_1:67516648-67516667 Msa1032560:intron 40.0%
GTCATTCTCTTTACTGTCCT+GGG + chr7_1:67516839-67516858 None:intergenic 40.0%
CAGGACAGTAAAGAGAATGA+CGG - chr7_1:67516838-67516857 Msa1032560:intron 40.0%
AACACCCATAATTACGTTCC+TGG + chr7_1:67516944-67516963 None:intergenic 40.0%
! TCCTGCCAAGTTTCCTTTTA+AGG - chr7_1:67516983-67517002 Msa1032560:intron 40.0%
! CCTGCCAAGTTTCCTTTTAA+GGG - chr7_1:67516984-67517003 Msa1032560:intron 40.0%
! CTGCCAAGTTTCCTTTTAAG+GGG - chr7_1:67516985-67517004 Msa1032560:intron 40.0%
! CAGATTTTTATGCCCTTGCA+TGG - chr7_1:67517040-67517059 Msa1032560:CDS 40.0%
TATCTACCAAAGCCATGCAA+GGG + chr7_1:67517055-67517074 None:intergenic 40.0%
ATATCTACCAAAGCCATGCA+AGG + chr7_1:67517056-67517075 None:intergenic 40.0%
CTTTCAGAAACATGGTACCT+GGG + chr7_1:67517090-67517109 None:intergenic 40.0%
TGAACAATTGCAACTCACTC+GGG + chr7_1:67517116-67517135 None:intergenic 40.0%
AGATAAGGTAAGGTGGCGAT+TGG + chr7_1:67511831-67511850 None:intergenic 45.0%
CGGAAGAAGATAAGGTAAGG+TGG + chr7_1:67511838-67511857 None:intergenic 45.0%
! TCTGGAGTGATTAGAAGAGG+TGG + chr7_1:67511922-67511941 None:intergenic 45.0%
!! GGTTCTGGAGTGATTAGAAG+AGG + chr7_1:67511925-67511944 None:intergenic 45.0%
AAGAGGTGAAGGTCTTCTTC+TGG + chr7_1:67511970-67511989 None:intergenic 45.0%
CTTCACCTCTTAAATCCCAC+CGG - chr7_1:67511979-67511998 Msa1032560:three_prime_UTR 45.0%
AGGTACTAACTTGACGAACC+GGG + chr7_1:67512024-67512043 None:intergenic 45.0%
! ATCTTGAACTTGAGGTGCCT+CGG + chr7_1:67512066-67512085 None:intergenic 45.0%
TCAAGATTCACCTGAGGTTC+AGG - chr7_1:67512079-67512098 Msa1032560:three_prime_UTR 45.0%
GTAGTTGTTATACCGTTGCG+GGG - chr7_1:67512475-67512494 Msa1032560:intron 45.0%
TAGTTGTTATACCGTTGCGG+GGG - chr7_1:67512476-67512495 Msa1032560:intron 45.0%
AGGTGTCTGAGAGAAATGCA+TGG - chr7_1:67512787-67512806 Msa1032560:intron 45.0%
ATTGGGTGTAGAAGTGATGG+AGG - chr7_1:67512822-67512841 Msa1032560:CDS 45.0%
! TTGGGTGTAGAAGTGATGGA+GGG - chr7_1:67512823-67512842 Msa1032560:CDS 45.0%
! GTGATGGAGGGTAGAATCTA+AGG - chr7_1:67512835-67512854 Msa1032560:CDS 45.0%
! TGGAGGGTAGAATCTAAGGT+AGG - chr7_1:67512839-67512858 Msa1032560:CDS 45.0%
AGCTCTTGGCACAAGTCTTA+AGG + chr7_1:67513097-67513116 None:intergenic 45.0%
GTAAAGAGTAGAGAAGGGTC+TGG - chr7_1:67513156-67513175 Msa1032560:intron 45.0%
CAAACAAGCGTGCACTACAT+TGG + chr7_1:67513293-67513312 None:intergenic 45.0%
GGAGTTGTTCCCTTGTAACT+TGG + chr7_1:67513646-67513665 None:intergenic 45.0%
!! GGCGTTGGTAATAAGTGCTA+AGG + chr7_1:67513680-67513699 None:intergenic 45.0%
! GACTTATGATGCTAATGGGC+TGG + chr7_1:67513701-67513720 None:intergenic 45.0%
AGGGAGAGTAGCAGATATAG+TGG + chr7_1:67513870-67513889 None:intergenic 45.0%
TGCTGGTACACCAATTCAAC+AGG - chr7_1:67514390-67514409 Msa1032560:CDS 45.0%
TGCAGTCAAAGTTGCTGAGT+TGG - chr7_1:67514543-67514562 Msa1032560:CDS 45.0%
CATTTGTGACCAGTGAAAGG+CGG + chr7_1:67514714-67514733 None:intergenic 45.0%
GAGCATTTGTGACCAGTGAA+AGG + chr7_1:67514717-67514736 None:intergenic 45.0%
TCACTGGTCACAAATGCTCA+AGG - chr7_1:67514718-67514737 Msa1032560:intron 45.0%
CACTGGTCACAAATGCTCAA+GGG - chr7_1:67514719-67514738 Msa1032560:intron 45.0%
ACTGGTCACAAATGCTCAAG+GGG - chr7_1:67514720-67514739 Msa1032560:intron 45.0%
AAATGCTCAAGGGGAAGTTG+TGG - chr7_1:67514729-67514748 Msa1032560:intron 45.0%
!! GGAGAGTTTGTTGCCTGTAT+TGG - chr7_1:67514750-67514769 Msa1032560:intron 45.0%
GAGAGCTAAAGCTCAGATCA+AGG - chr7_1:67514783-67514802 Msa1032560:intron 45.0%
AGCTAAAGCTCAGATCAAGG+TGG - chr7_1:67514786-67514805 Msa1032560:intron 45.0%
TGGAAGTCCCTTTGATCCAA+TGG - chr7_1:67514909-67514928 Msa1032560:intron 45.0%
ACAGCTGTTAGTGTCTATGG+GGG + chr7_1:67515123-67515142 None:intergenic 45.0%
ATGGTCTGGTCAAAATCCTC+GGG - chr7_1:67515257-67515276 Msa1032560:intron 45.0%
GAACGGAATGGTTCAGTACA+AGG - chr7_1:67515568-67515587 Msa1032560:intron 45.0%
! AAGAGACAGGTAATGGTGTG+AGG - chr7_1:67515631-67515650 Msa1032560:intron 45.0%
!! GTGTGAGGCTAGTTGTGTTT+TGG - chr7_1:67515646-67515665 Msa1032560:intron 45.0%
!! TGAGGCTAGTTGTGTTTTGG+TGG - chr7_1:67515649-67515668 Msa1032560:intron 45.0%
CGATTGAATTTCGAGCCAAC+TGG + chr7_1:67516235-67516254 None:intergenic 45.0%
TCGATTGTTTCGAGCCAACT+TGG - chr7_1:67516341-67516360 Msa1032560:intron 45.0%
! TTCATTTGAGGCAGTAGCTG+AGG + chr7_1:67516511-67516530 None:intergenic 45.0%
! TCACCATTGATGGACGTAAG+AGG + chr7_1:67516741-67516760 None:intergenic 45.0%
CTTACGTCCATCAATGGTGA+AGG - chr7_1:67516741-67516760 Msa1032560:intron 45.0%
GCTGATACCTTCACCATTGA+TGG + chr7_1:67516751-67516770 None:intergenic 45.0%
!! TCAATGGTGAAGGTATCAGC+TGG - chr7_1:67516751-67516770 Msa1032560:intron 45.0%
!! TTGGTGACTTGTTCTTCCTG+TGG + chr7_1:67516808-67516827 None:intergenic 45.0%
AGTCACCAATGAAACTTCCC+AGG - chr7_1:67516819-67516838 Msa1032560:intron 45.0%
ACTGTCCTGGGAAGTTTCAT+TGG + chr7_1:67516827-67516846 None:intergenic 45.0%
CGTCATTCTCTTTACTGTCC+TGG + chr7_1:67516840-67516859 None:intergenic 45.0%
AGAAACAGAGTCCGCTTGAA+AGG - chr7_1:67516867-67516886 Msa1032560:intron 45.0%
GGCAAAGTTGTCCTTTCAAG+CGG + chr7_1:67516881-67516900 None:intergenic 45.0%
CTTGAAAGGACAACTTTGCC+TGG - chr7_1:67516881-67516900 Msa1032560:intron 45.0%
CCCTTAAAAGGAAACTTGGC+AGG + chr7_1:67516987-67517006 None:intergenic 45.0%
TTTATGCCCTTGCATGGCTT+TGG - chr7_1:67517046-67517065 Msa1032560:CDS 45.0%
CCTTTCAGAAACATGGTACC+TGG + chr7_1:67517091-67517110 None:intergenic 45.0%
! CCAGGTACCATGTTTCTGAA+AGG - chr7_1:67517088-67517107 Msa1032560:CDS 45.0%
GAACAATTGCAACTCACTCG+GGG + chr7_1:67517115-67517134 None:intergenic 45.0%
TTGTTCAAGTGTTTGGCACC+TGG - chr7_1:67517129-67517148 Msa1032560:CDS 45.0%
!! ACACTGATTCTCCTAACTCC+AGG + chr7_1:67517150-67517169 None:intergenic 45.0%
GTGGCCATCGGAAGAAGATA+AGG + chr7_1:67511846-67511865 None:intergenic 50.0%
GGAGTGATTAGAAGAGGTGG+CGG + chr7_1:67511919-67511938 None:intergenic 50.0%
! TCTTCTTCTGGAGGATGCGA+CGG + chr7_1:67511958-67511977 None:intergenic 50.0%
AGGTGAAGGTCTTCTTCTGG+AGG + chr7_1:67511967-67511986 None:intergenic 50.0%
CGGTGGGATTTAAGAGGTGA+AGG + chr7_1:67511981-67512000 None:intergenic 50.0%
! CCTCTTAAATCCCACCGGTT+CGG - chr7_1:67511984-67512003 Msa1032560:three_prime_UTR 50.0%
GAGTGGGAATTGAACCGAAC+CGG + chr7_1:67512001-67512020 None:intergenic 50.0%
GGTACTAACTTGACGAACCG+GGG + chr7_1:67512023-67512042 None:intergenic 50.0%
! TGCTTTTGACGGAGATACCG+AGG - chr7_1:67512046-67512065 Msa1032560:three_prime_UTR 50.0%
! TTCACCTGAGGTTCAGGTTC+TGG - chr7_1:67512085-67512104 Msa1032560:three_prime_UTR 50.0%
CTTACCAGAACCTGAACCTC+AGG + chr7_1:67512092-67512111 None:intergenic 50.0%
!!! AGGTTTTAGATCCCCCGCAA+CGG + chr7_1:67512490-67512509 None:intergenic 50.0%
AAGAGTAGAGAAGGGTCTGG+CGG - chr7_1:67513159-67513178 Msa1032560:intron 50.0%
TGCACTACATTGGACGGTCA+TGG + chr7_1:67513283-67513302 None:intergenic 50.0%
CAAGCGTGCACTACATTGGA+CGG + chr7_1:67513289-67513308 None:intergenic 50.0%
CTAGTACTTGTAAGCCCCCA+AGG + chr7_1:67513723-67513742 None:intergenic 50.0%
!! TACAGATGGTGCTGCTGATG+TGG - chr7_1:67514417-67514436 Msa1032560:CDS 50.0%
CAGTGAAAGGCGGTCTCTAT+CGG + chr7_1:67514704-67514723 None:intergenic 50.0%
TCAGATCAAGGTGGAGACAG+AGG - chr7_1:67514795-67514814 Msa1032560:intron 50.0%
CAGATCAAGGTGGAGACAGA+GGG - chr7_1:67514796-67514815 Msa1032560:intron 50.0%
TGGAGTTGAGCCAGTGGATA+CGG - chr7_1:67514885-67514904 Msa1032560:intron 50.0%
AATTGCACTCACCTCCCTTG+AGG + chr7_1:67515854-67515873 None:intergenic 50.0%
! CTTCAGGTTTCCTGAAGACC+TGG - chr7_1:67516293-67516312 Msa1032560:intron 50.0%
! CCATTGATGGACGTAAGAGG+CGG + chr7_1:67516738-67516757 None:intergenic 50.0%
TCCTGTGGTACTTCTTGCTC+CGG + chr7_1:67516793-67516812 None:intergenic 50.0%
TCGGGGTCCTTTCAGAAACA+TGG + chr7_1:67517098-67517117 None:intergenic 50.0%
AGTGTTTGGCACCTGGAGTT+AGG - chr7_1:67517136-67517155 Msa1032560:CDS 50.0%
GAATGTGGGAGTTCGGAGGA+CGG + chr7_1:67511868-67511887 None:intergenic 55.0%
TCCTCCGAACTCCCACATTC+CGG - chr7_1:67511868-67511887 Msa1032560:three_prime_UTR 55.0%
ATGGCCGGAATGTGGGAGTT+CGG + chr7_1:67511875-67511894 None:intergenic 55.0%
! GTGATTAGAAGAGGTGGCGG+CGG + chr7_1:67511916-67511935 None:intergenic 55.0%
CCGAACCGGTGGGATTTAAG+AGG + chr7_1:67511987-67512006 None:intergenic 55.0%
GGGAATTGAACCGAACCGGT+GGG + chr7_1:67511997-67512016 None:intergenic 55.0%
TGGGAATTGAACCGAACCGG+TGG + chr7_1:67511998-67512017 None:intergenic 55.0%
TCGGTTCAATTCCCACTCCC+CGG - chr7_1:67512003-67512022 Msa1032560:three_prime_UTR 55.0%
AACTTGACGAACCGGGGAGT+GGG + chr7_1:67512017-67512036 None:intergenic 55.0%
TAACTTGACGAACCGGGGAG+TGG + chr7_1:67512018-67512037 None:intergenic 55.0%
GCAGTCTGCAACTGCAATCG+CGG + chr7_1:67512524-67512543 None:intergenic 55.0%
GGACGGTCATGGAGTCTGAA+AGG + chr7_1:67513272-67513291 None:intergenic 55.0%
!! TGATGCTAATGGGCTGGCGT+TGG + chr7_1:67513695-67513714 None:intergenic 55.0%
!! AGATGGTGCTGCTGATGTGG+AGG - chr7_1:67514420-67514439 Msa1032560:CDS 55.0%
! GCTGATGTGGAGGAGAGTAC+AGG - chr7_1:67514430-67514449 Msa1032560:CDS 55.0%
! GGAGAGTACAGGCGATGATG+AGG - chr7_1:67514441-67514460 Msa1032560:CDS 55.0%
CGATAGAGACCGCCTTTCAC+TGG - chr7_1:67514702-67514721 Msa1032560:intron 55.0%
CTCACTTGGAGTTGAGCCAG+TGG - chr7_1:67514879-67514898 Msa1032560:intron 55.0%
GTTGAGCCAGTGGATACGGT+TGG - chr7_1:67514889-67514908 Msa1032560:intron 55.0%
GGACTTCCAACCGTATCCAC+TGG + chr7_1:67514898-67514917 None:intergenic 55.0%
CACTCACACCCCCTCTAGTT+TGG - chr7_1:67515052-67515071 Msa1032560:intron 55.0%
ATCCTCGGGAGCTCCTTCAA+CGG - chr7_1:67515271-67515290 Msa1032560:intron 55.0%
GGTCAGATGTCTCCCGTTGA+AGG + chr7_1:67515287-67515306 None:intergenic 55.0%
CCGCCTCTTACGTCCATCAA+TGG - chr7_1:67516735-67516754 Msa1032560:intron 55.0%
!! GTGAAGGTATCAGCTGGTCC+AGG - chr7_1:67516757-67516776 Msa1032560:intron 55.0%
GTTGGGGATGGCCGGAATGT+GGG + chr7_1:67511882-67511901 None:intergenic 60.0%
TGAGAAGGGTTGGGGATGGC+CGG + chr7_1:67511890-67511909 None:intergenic 60.0%
GTGGTGAGAAGGGTTGGGGA+TGG + chr7_1:67511894-67511913 None:intergenic 60.0%
! ATTAGAAGAGGTGGCGGCGG+TGG + chr7_1:67511913-67511932 None:intergenic 60.0%
GACGGAAACGCGTGAGGTTC+TGG + chr7_1:67511940-67511959 None:intergenic 60.0%
GATGATGAGGTCAGCGACGC+TGG - chr7_1:67514454-67514473 Msa1032560:CDS 60.0%
CAAGGTGGAGACAGAGGGAG+AGG - chr7_1:67514801-67514820 Msa1032560:intron 60.0%
TCCTCGGGAGCTCCTTCAAC+GGG - chr7_1:67515272-67515291 Msa1032560:intron 60.0%
! ATGCAGGGGCGCAAACCAGT+TGG - chr7_1:67516217-67516236 Msa1032560:intron 60.0%
!! GCCGGAGCAAGAAGTACCAC+AGG - chr7_1:67516789-67516808 Msa1032560:intron 60.0%
GTTCGGAGGACGGTGGCCAT+CGG + chr7_1:67511858-67511877 None:intergenic 65.0%
TGTGGGAGTTCGGAGGACGG+TGG + chr7_1:67511865-67511884 None:intergenic 65.0%
GCCGGAATGTGGGAGTTCGG+AGG + chr7_1:67511872-67511891 None:intergenic 65.0%
GGTTGGGGATGGCCGGAATG+TGG + chr7_1:67511883-67511902 None:intergenic 65.0%
GGCGGTGGTGAGAAGGGTTG+GGG + chr7_1:67511898-67511917 None:intergenic 65.0%
CGGCGGTGGTGAGAAGGGTT+GGG + chr7_1:67511899-67511918 None:intergenic 65.0%
GGATGCGACGGAAACGCGTG+AGG + chr7_1:67511946-67511965 None:intergenic 65.0%
TCCCGTTGAAGGAGCTCCCG+AGG + chr7_1:67515276-67515295 None:intergenic 65.0%
GCGGCGGTGGTGAGAAGGGT+TGG + chr7_1:67511900-67511919 None:intergenic 70.0%
! GGTGGCGGCGGTGGTGAGAA+GGG + chr7_1:67511904-67511923 None:intergenic 70.0%
! AGGTGGCGGCGGTGGTGAGA+AGG + chr7_1:67511905-67511924 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67511784 67517310 67511784 ID=Msa1032560;Name=Msa1032560
chr7_1 mRNA 67511784 67517310 67511784 ID=Msa1032560-mRNA-1;Parent=Msa1032560;Name=Msa1032560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|0.66|0.75|1|1|1|4|425|357
chr7_1 exon 67511784 67512448 67511784 ID=Msa1032560-mRNA-1:exon:15524;Parent=Msa1032560-mRNA-1
chr7_1 exon 67512806 67512871 67512806 ID=Msa1032560-mRNA-1:exon:15523;Parent=Msa1032560-mRNA-1
chr7_1 exon 67514164 67514682 67514164 ID=Msa1032560-mRNA-1:exon:15522;Parent=Msa1032560-mRNA-1
chr7_1 exon 67516988 67517310 67516988 ID=Msa1032560-mRNA-1:exon:15521;Parent=Msa1032560-mRNA-1
chr7_1 five_prime_UTR 67517237 67517310 67517237 ID=Msa1032560-mRNA-1:five_prime_utr;Parent=Msa1032560-mRNA-1
chr7_1 CDS 67516988 67517236 67516988 ID=Msa1032560-mRNA-1:cds;Parent=Msa1032560-mRNA-1
chr7_1 CDS 67514164 67514682 67514164 ID=Msa1032560-mRNA-1:cds;Parent=Msa1032560-mRNA-1
chr7_1 CDS 67512806 67512871 67512806 ID=Msa1032560-mRNA-1:cds;Parent=Msa1032560-mRNA-1
chr7_1 CDS 67512209 67512448 67512209 ID=Msa1032560-mRNA-1:cds;Parent=Msa1032560-mRNA-1
chr7_1 three_prime_UTR 67511784 67512208 67511784 ID=Msa1032560-mRNA-1:three_prime_utr;Parent=Msa1032560-mRNA-1
Gene Sequence

>Msa1032560

ATGGCCACCGTCCTCCGAACTCCCACATTCCGGCCATCCCCAACCCTTCTCACCACCGCCGCCACCTCTTCTAATCACTCCAGAACCTCACGCGTTTCCGTCGCATCCTCCAGAAGAAGACCTTCACCTCTTAAATCCCACCGGTTCGGTTCAATTCCCACTCCCCGGTTCGTCAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCACCTCAAGTTCAAGATTCACCTGAGGTTCAGGTTCTGGACTCTACAGATGGTGCTGCTGATGTGGAGGAGAGTACAGGCGATGATGAGGTCAGCGACGCTGGTGAAATACCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCATTAGCTAATAATGATGCAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATTGATGATGAGATAGTAGGTCTTGAAGGGAAAATAGCTTCCTTATCCGAAGAGTTATCAATAGAAAAAGATCGAAAACTAAGGATCGGTGCAGACTTTGACAATTATCGGAAGAGAACCGATAGAGACCGCCTTTCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATCAAGGTGGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAGCCAGTGGATACGGTTGGAAGTCCCTTTGATCCAATGGGGCGCAAACCAGTTGGCTCGAAATTCAATCGTGTACTTGCTGAACTTTTTCAAACACTATATCAACTACATGAAGCAATTATGCGTGAGGATTCTGATGAATTTGAAGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGCCGGAGCAAGAAGTACCACAGGAAGAACAAGTCACCAATGAAACTTCCCAGGACAGTAAAGAGAATGACGGCAACACAGAAACAGAGTCCGCTTGA

Protein sequence

>Msa1032560

MATVLRTPTFRPSPTLLTTAATSSNHSRTSRVSVASSRRRPSPLKSHRFGSIPTPRFVKLVPFAFDGDTEAPQVQDSPEVQVLDSTDGAADVEESTGDDEVSDAGEIPASPLIVLLQSYKEALANNDAVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVDTVGSPFDPMGRKPVGSKFNRVLAELFQTLYQLHEAIMREDSDEFEDGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEVPQEEQVTNETSQDSKENDGNTETESA*