AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145590 MtrunA17_Chr1g0154431 97.073 205 6 0 1 205 1 205 1.28e-142 395
Msa0145590 MtrunA17_Chr3g0118021 46.875 128 59 4 82 205 283 405 7.24e-22 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145590 AT1G74970.1 73.786 206 50 1 4 205 3 208 3.81e-100 288
Msa0145590 AT3G49080.1 46.094 128 60 4 82 205 308 430 2.41e-21 91.3

Find 92 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTATCTGTAAAATTTC+TGG 0.180911 1_4:-5290950 Msa0145590:three_prime_UTR
TTCATATCCCAAAGTTAATA+AGG 0.207962 1_4:+5291492 None:intergenic
GCGAGAGAGGGAGAAGGTTC+TGG 0.263181 1_4:+5293083 None:intergenic
TACAGTGAGAGAGGGGAGTT+TGG 0.295949 1_4:+5293056 None:intergenic
GAGGAAATAACATATATTTC+AGG 0.295972 1_4:+5291026 None:intergenic
TTCACTGAGGCCTTTGTATT+CGG 0.318413 1_4:-5291157 Msa0145590:three_prime_UTR
AAACCTTCAGCATAGTAAAA+AGG 0.330437 1_4:+5291058 None:intergenic
TCCATACTATCAAAAGAATA+AGG 0.334748 1_4:+5291117 None:intergenic
CTTCCTTGTATCTCTGTAGT+TGG 0.337655 1_4:-5291213 Msa0145590:three_prime_UTR
TAAGGTGCCCTTATTAACTT+TGG 0.349914 1_4:-5291500 Msa0145590:CDS
GGAAGAGATGTTGGAGGAGA+AGG 0.354247 1_4:+5293128 None:intergenic
TACTATGCTGAAGGTTTCTC+TGG 0.363809 1_4:-5291052 Msa0145590:three_prime_UTR
GCTATGGCTTCAATACATTA+AGG 0.364577 1_4:-5291518 Msa0145590:CDS
GTTTCAGAACCATTGATTGT+AGG 0.372926 1_4:-5291181 Msa0145590:three_prime_UTR
ACAGTGAGAGAGGGGAGTTT+GGG 0.373337 1_4:+5293057 None:intergenic
GCCGAGGGTGGTGGCCTCTC+TGG 0.385356 1_4:-5291445 Msa0145590:CDS
TCAGCGATTTCGGGTTCGGC+AGG 0.386590 1_4:+5293012 None:intergenic
GGAAGATGTGAGAGATGATA+AGG 0.391926 1_4:+5293164 None:intergenic
TACGTCAAATCTAGACTTCC+TGG 0.398636 1_4:-5292979 Msa0145590:CDS
GAGGTCAGCGATTTCGGGTT+CGG 0.399549 1_4:+5293008 None:intergenic
CGAGAGAGGGAGAAGGTTCT+GGG 0.402856 1_4:+5293084 None:intergenic
GAGAGAAAGAGTGGTTGGTT+TGG 0.411001 1_4:+5293107 None:intergenic
TCATATCCCAAAGTTAATAA+GGG 0.425774 1_4:+5291493 None:intergenic
GGAGTTTGGGAGAGCGAGAG+AGG 0.434020 1_4:+5293070 None:intergenic
GTTGTTCTTCAAGAAGGAAC+TGG 0.437149 1_4:-5292898 Msa0145590:CDS
TTCAATGTGTTAGCTATGAA+TGG 0.440360 1_4:+5293201 None:intergenic
AAGGTGCCCTTATTAACTTT+GGG 0.444377 1_4:-5291499 Msa0145590:CDS
AGCGATTTCGGGTTCGGCAG+GGG 0.451024 1_4:+5293014 None:intergenic
GGTTGGTTTGGAAGAGATGT+TGG 0.453798 1_4:+5293119 None:intergenic
GAACGAAGAAGATAGAGAAA+GGG 0.455707 1_4:+5293242 None:intergenic
CTGGGGAGAGAAAGAGTGGT+TGG 0.457943 1_4:+5293102 None:intergenic
TGAACGAAGAAGATAGAGAA+AGG 0.460529 1_4:+5293241 None:intergenic
TGGCCTCTCTGGTCAAGCTC+AGG 0.465015 1_4:-5291434 Msa0145590:CDS
GCTCGTGTTGTTCTTCAAGA+AGG 0.466362 1_4:-5292904 Msa0145590:CDS
CTCAATATTCTAAACGTTGA+GGG 0.468618 1_4:-5291270 Msa0145590:exon
AGTATGGAATTGGGAAATGC+AGG 0.468643 1_4:-5291102 Msa0145590:three_prime_UTR
GAGTTTGGGAGAGCGAGAGA+GGG 0.493027 1_4:+5293071 None:intergenic
CAAAAGAATAAGGAAACAAA+GGG 0.497081 1_4:+5291127 None:intergenic
AAGACTCAGAAATTACTGAT+TGG 0.498709 1_4:+5290881 None:intergenic
ACCAGAGAGGCCACCACCCT+CGG 0.499426 1_4:+5291444 None:intergenic
GGAGAAGGAGAGTGAAGAGA+GGG 0.500055 1_4:+5293143 None:intergenic
GTTGTACAGGAATATCTTCA+AGG 0.503982 1_4:-5291547 Msa0145590:intron
GGTTCTGGGGAGAGAAAGAG+TGG 0.505468 1_4:+5293098 None:intergenic
TACACATAATCAATTAAAAG+AGG 0.518003 1_4:+5291007 None:intergenic
CATTAATTACCGTGATGCTA+AGG 0.519189 1_4:-5292866 Msa0145590:intron
AACGAAGAAGATAGAGAAAG+GGG 0.520760 1_4:+5293243 None:intergenic
CCTCAACGTTTAGAATATTG+AGG 0.522813 1_4:+5291271 None:intergenic
CAGCGATTTCGGGTTCGGCA+GGG 0.530065 1_4:+5293013 None:intergenic
TCAGTGAAACCTACAATCAA+TGG 0.532080 1_4:+5291172 None:intergenic
TCAAAAGAATAAGGAAACAA+AGG 0.537009 1_4:+5291126 None:intergenic
CAAGCTCAGGCAATCACCCT+TGG 0.537358 1_4:-5291421 Msa0145590:CDS
TTTGTTAAAGCCGAGGGTGG+TGG 0.539681 1_4:-5291454 Msa0145590:CDS
AGGAGAAGGAGAGTGAAGAG+AGG 0.540862 1_4:+5293142 None:intergenic
GGGAGAGCGAGAGAGGGAGA+AGG 0.555061 1_4:+5293077 None:intergenic
TATTGCTCGTGCTTTGCTGA+AGG 0.555282 1_4:-5291398 Msa0145590:CDS
AGAAGCCCTTGTTGTCTCAA+AGG 0.556232 1_4:+5291355 None:intergenic
CCTCAATATTCTAAACGTTG+AGG 0.561139 1_4:-5291271 Msa0145590:exon
GTTTGAGCGGCGAATCCACC+AGG 0.564283 1_4:+5292961 None:intergenic
CTATCATCGGTACCGGTCGT+CGG 0.573481 1_4:-5292939 Msa0145590:CDS
GCTGTTGAGAGGAAGAAAGT+TGG 0.577966 1_4:-5291316 Msa0145590:CDS
AGAATAAGGAAACAAAGGGC+AGG 0.578550 1_4:+5291131 None:intergenic
TGGTTTGGAAGAGATGTTGG+AGG 0.581447 1_4:+5293122 None:intergenic
ATCTTCAAGGAAATCCGCTA+TGG 0.582748 1_4:-5291534 Msa0145590:CDS
ATGAATAAACCTTAGCATCA+CGG 0.583868 1_4:+5292857 None:intergenic
GTTGCAGTTACAGTGAGAGA+GGG 0.585075 1_4:+5293048 None:intergenic
GCTCAAACTATCATCGGTAC+CGG 0.599214 1_4:-5292946 Msa0145590:CDS
TTGCAGTTACAGTGAGAGAG+GGG 0.601983 1_4:+5293049 None:intergenic
ATGTGTTAGCTATGAATGGA+TGG 0.603428 1_4:+5293205 None:intergenic
TTCGCCGCTCAAACTATCAT+CGG 0.609487 1_4:-5292952 Msa0145590:CDS
AGCTAACACATTGAAAACAA+TGG 0.610537 1_4:-5293193 Msa0145590:exon
TGTTGCAGTTACAGTGAGAG+AGG 0.613247 1_4:+5293047 None:intergenic
GAGAGAGGGAGAAGGTTCTG+GGG 0.622430 1_4:+5293085 None:intergenic
TAACCAACTACAGAGATACA+AGG 0.623387 1_4:+5291210 None:intergenic
GAGATTCTAGAGCTGTTGAG+AGG 0.623504 1_4:-5291327 Msa0145590:CDS
GTTAGCTATGAATGGATGGA+TGG 0.627566 1_4:+5293209 None:intergenic
GCAAAGCACGAGCAATACCA+AGG 0.631053 1_4:+5291404 None:intergenic
AATATTCTAAACGTTGAGGG+TGG 0.633829 1_4:-5291267 Msa0145590:exon
AGAGTACCTTTGAGACAACA+AGG 0.639079 1_4:-5291361 Msa0145590:CDS
AGATACAAGGAAGAATAATG+AGG 0.640925 1_4:+5291223 None:intergenic
TGATGTGTTTGTTAAAGCCG+AGG 0.644634 1_4:-5291461 Msa0145590:CDS
GCTTTGCTGAAGGTTAGTGA+AGG 0.657687 1_4:-5291388 Msa0145590:CDS
GTGTTTGTTAAAGCCGAGGG+TGG 0.665062 1_4:-5291457 Msa0145590:CDS
GGGCAGGATTCCGAATACAA+AGG 0.665424 1_4:+5291147 None:intergenic
GATGTGTTTGTTAAAGCCGA+GGG 0.678212 1_4:-5291460 Msa0145590:CDS
TATTGAGATACACTTGAACA+AGG 0.681885 1_4:+5290975 None:intergenic
CAAAGCACGAGCAATACCAA+GGG 0.695483 1_4:+5291405 None:intergenic
GTCAAATCTAGACTTCCTGG+TGG 0.704409 1_4:-5292976 Msa0145590:CDS
GAGTACCTTTGAGACAACAA+GGG 0.708894 1_4:-5291360 Msa0145590:CDS
TTGCCTGAGCTTGACCAGAG+AGG 0.719687 1_4:+5291431 None:intergenic
TTAATGTATTGAAGCCATAG+CGG 0.725178 1_4:+5291520 None:intergenic
ATTGATTGTAGGTTTCACTG+AGG 0.737800 1_4:-5291170 Msa0145590:three_prime_UTR
GGTACCGATGATAGTTTGAG+CGG 0.743280 1_4:+5292948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATAAAAACTGAAATAA+TGG - chr1_4:5291909-5291928 Msa0145590:intron 15.0%
!! TTATTTATCCGAAAAATATA+AGG - chr1_4:5292164-5292183 Msa0145590:intron 15.0%
!! TAGAATAAAAACTGAAATAA+TGG - chr1_4:5291909-5291928 Msa0145590:intron 15.0%
!! TTATTTATCCGAAAAATATA+AGG - chr1_4:5292164-5292183 Msa0145590:intron 15.0%
!!! TGAGTATTTTTAATTACGTT+AGG - chr1_4:5291307-5291326 Msa0145590:CDS 20.0%
!! AAGATAAGATTTACTTGAAA+TGG + chr1_4:5291561-5291580 None:intergenic 20.0%
!! TCGGATAAATAACATTATAT+TGG + chr1_4:5292156-5292175 None:intergenic 20.0%
!! ATATAATGTGAAAACAAACA+CGG - chr1_4:5292337-5292356 Msa0145590:intron 20.0%
!! GAAGAAAGAAAAAAAATGTT+TGG + chr1_4:5292427-5292446 None:intergenic 20.0%
!!! TTTAGAATTTAATGTTGTAC+AGG - chr1_4:5292518-5292537 Msa0145590:intron 20.0%
!! TACACATAATCAATTAAAAG+AGG + chr1_4:5293074-5293093 None:intergenic 20.0%
!!! TGAGTATTTTTAATTACGTT+AGG - chr1_4:5291307-5291326 Msa0145590:CDS 20.0%
!! AAGATAAGATTTACTTGAAA+TGG + chr1_4:5291561-5291580 None:intergenic 20.0%
!! TCGGATAAATAACATTATAT+TGG + chr1_4:5292156-5292175 None:intergenic 20.0%
!! ATATAATGTGAAAACAAACA+CGG - chr1_4:5292337-5292356 Msa0145590:intron 20.0%
!! GAAGAAAGAAAAAAAATGTT+TGG + chr1_4:5292427-5292446 None:intergenic 20.0%
!!! TTTAGAATTTAATGTTGTAC+AGG - chr1_4:5292518-5292537 Msa0145590:intron 20.0%
!! TACACATAATCAATTAAAAG+AGG + chr1_4:5293074-5293093 None:intergenic 20.0%
! ACGTTAGGAAAATTATAATG+TGG - chr1_4:5291322-5291341 Msa0145590:CDS 25.0%
! GGAAAATTATAATGTGGTAT+TGG - chr1_4:5291328-5291347 Msa0145590:CDS 25.0%
!! TATAATGTGGTATTGGATTT+AGG - chr1_4:5291335-5291354 Msa0145590:CDS 25.0%
!! ATAATGTGGTATTGGATTTA+GGG - chr1_4:5291336-5291355 Msa0145590:CDS 25.0%
! TGAATAAGTTAATGCTGAAA+AGG - chr1_4:5291390-5291409 Msa0145590:CDS 25.0%
!! ACACTTATAATCTAAAGTCT+CGG + chr1_4:5291952-5291971 None:intergenic 25.0%
! ACTTTAGATTATAAGTGTGT+CGG - chr1_4:5291954-5291973 Msa0145590:intron 25.0%
!! TTGGAGATCCTTATATTTTT+CGG + chr1_4:5292175-5292194 None:intergenic 25.0%
! TCATATCCCAAAGTTAATAA+GGG + chr1_4:5292588-5292607 None:intergenic 25.0%
! TTCATATCCCAAAGTTAATA+AGG + chr1_4:5292589-5292608 None:intergenic 25.0%
! CAAAAGAATAAGGAAACAAA+GGG + chr1_4:5292954-5292973 None:intergenic 25.0%
! TCAAAAGAATAAGGAAACAA+AGG + chr1_4:5292955-5292974 None:intergenic 25.0%
!!! TCCTTATTCTTTTGATAGTA+TGG - chr1_4:5292960-5292979 Msa0145590:CDS 25.0%
! TCCATACTATCAAAAGAATA+AGG + chr1_4:5292964-5292983 None:intergenic 25.0%
!!! TTCTTTTGATAGTATGGAAT+TGG - chr1_4:5292966-5292985 Msa0145590:CDS 25.0%
!!! TCTTTTGATAGTATGGAATT+GGG - chr1_4:5292967-5292986 Msa0145590:CDS 25.0%
!! CATAGTAAAAAGGTGTATTT+GGG + chr1_4:5293013-5293032 None:intergenic 25.0%
! GAGGAAATAACATATATTTC+AGG + chr1_4:5293055-5293074 None:intergenic 25.0%
! TCAACTATCTGTAAAATTTC+TGG - chr1_4:5293128-5293147 Msa0145590:CDS 25.0%
! ACGTTAGGAAAATTATAATG+TGG - chr1_4:5291322-5291341 Msa0145590:CDS 25.0%
! GGAAAATTATAATGTGGTAT+TGG - chr1_4:5291328-5291347 Msa0145590:CDS 25.0%
!! TATAATGTGGTATTGGATTT+AGG - chr1_4:5291335-5291354 Msa0145590:CDS 25.0%
!! ATAATGTGGTATTGGATTTA+GGG - chr1_4:5291336-5291355 Msa0145590:CDS 25.0%
! TGAATAAGTTAATGCTGAAA+AGG - chr1_4:5291390-5291409 Msa0145590:CDS 25.0%
!! ACACTTATAATCTAAAGTCT+CGG + chr1_4:5291952-5291971 None:intergenic 25.0%
! ACTTTAGATTATAAGTGTGT+CGG - chr1_4:5291954-5291973 Msa0145590:intron 25.0%
!! TTGGAGATCCTTATATTTTT+CGG + chr1_4:5292175-5292194 None:intergenic 25.0%
! TCATATCCCAAAGTTAATAA+GGG + chr1_4:5292588-5292607 None:intergenic 25.0%
! TTCATATCCCAAAGTTAATA+AGG + chr1_4:5292589-5292608 None:intergenic 25.0%
! CAAAAGAATAAGGAAACAAA+GGG + chr1_4:5292954-5292973 None:intergenic 25.0%
! TCAAAAGAATAAGGAAACAA+AGG + chr1_4:5292955-5292974 None:intergenic 25.0%
!!! TCCTTATTCTTTTGATAGTA+TGG - chr1_4:5292960-5292979 Msa0145590:CDS 25.0%
! TCCATACTATCAAAAGAATA+AGG + chr1_4:5292964-5292983 None:intergenic 25.0%
!!! TTCTTTTGATAGTATGGAAT+TGG - chr1_4:5292966-5292985 Msa0145590:CDS 25.0%
!!! TCTTTTGATAGTATGGAATT+GGG - chr1_4:5292967-5292986 Msa0145590:CDS 25.0%
!! CATAGTAAAAAGGTGTATTT+GGG + chr1_4:5293013-5293032 None:intergenic 25.0%
! GAGGAAATAACATATATTTC+AGG + chr1_4:5293055-5293074 None:intergenic 25.0%
! TCAACTATCTGTAAAATTTC+TGG - chr1_4:5293128-5293147 Msa0145590:CDS 25.0%
TTCAATGTGTTAGCTATGAA+TGG + chr1_4:5290880-5290899 None:intergenic 30.0%
AGCTAACACATTGAAAACAA+TGG - chr1_4:5290885-5290904 Msa0145590:three_prime_UTR 30.0%
! TAGATTTGACGTATGTTTTG+AGG + chr1_4:5291092-5291111 None:intergenic 30.0%
ATGAATAAACCTTAGCATCA+CGG + chr1_4:5291224-5291243 None:intergenic 30.0%
!!! GCTGAAAAGGTTTTGTTAAT+TGG - chr1_4:5291403-5291422 Msa0145590:CDS 30.0%
! TCAAATTACCAAGAGTGTAT+GGG - chr1_4:5291725-5291744 Msa0145590:intron 30.0%
GTGATTACCCAAAAAACAAA+AGG - chr1_4:5291782-5291801 Msa0145590:intron 30.0%
!!! ACAAGCTCCTTTTGTTTTTT+GGG + chr1_4:5291792-5291811 None:intergenic 30.0%
!!! AACAAGCTCCTTTTGTTTTT+TGG + chr1_4:5291793-5291812 None:intergenic 30.0%
!! AGCTTGTTATCAAACATAAG+TGG - chr1_4:5291805-5291824 Msa0145590:intron 30.0%
!! GCTTGTTATCAAACATAAGT+GGG - chr1_4:5291806-5291825 Msa0145590:intron 30.0%
CTTTAGATTATAAGTGTGTC+GGG - chr1_4:5291955-5291974 Msa0145590:intron 30.0%
!!! TTTTTTTTCTTTCTTCCCAC+TGG - chr1_4:5292431-5292450 Msa0145590:intron 30.0%
TTAATGTATTGAAGCCATAG+CGG + chr1_4:5292561-5292580 None:intergenic 30.0%
CTCAATATTCTAAACGTTGA+GGG - chr1_4:5292808-5292827 Msa0145590:intron 30.0%
AGATACAAGGAAGAATAATG+AGG + chr1_4:5292858-5292877 None:intergenic 30.0%
! GCATAGTAAAAAGGTGTATT+TGG + chr1_4:5293014-5293033 None:intergenic 30.0%
AAACCTTCAGCATAGTAAAA+AGG + chr1_4:5293023-5293042 None:intergenic 30.0%
TATTGAGATACACTTGAACA+AGG + chr1_4:5293106-5293125 None:intergenic 30.0%
!!! ACTGATTGGTGTTTTAATGA+TGG + chr1_4:5293186-5293205 None:intergenic 30.0%
AAGACTCAGAAATTACTGAT+TGG + chr1_4:5293200-5293219 None:intergenic 30.0%
TTCAATGTGTTAGCTATGAA+TGG + chr1_4:5290880-5290899 None:intergenic 30.0%
AGCTAACACATTGAAAACAA+TGG - chr1_4:5290885-5290904 Msa0145590:three_prime_UTR 30.0%
! TAGATTTGACGTATGTTTTG+AGG + chr1_4:5291092-5291111 None:intergenic 30.0%
ATGAATAAACCTTAGCATCA+CGG + chr1_4:5291224-5291243 None:intergenic 30.0%
!!! GCTGAAAAGGTTTTGTTAAT+TGG - chr1_4:5291403-5291422 Msa0145590:CDS 30.0%
! TCAAATTACCAAGAGTGTAT+GGG - chr1_4:5291725-5291744 Msa0145590:intron 30.0%
GTGATTACCCAAAAAACAAA+AGG - chr1_4:5291782-5291801 Msa0145590:intron 30.0%
!!! ACAAGCTCCTTTTGTTTTTT+GGG + chr1_4:5291792-5291811 None:intergenic 30.0%
!!! AACAAGCTCCTTTTGTTTTT+TGG + chr1_4:5291793-5291812 None:intergenic 30.0%
!! AGCTTGTTATCAAACATAAG+TGG - chr1_4:5291805-5291824 Msa0145590:intron 30.0%
!! GCTTGTTATCAAACATAAGT+GGG - chr1_4:5291806-5291825 Msa0145590:intron 30.0%
CTTTAGATTATAAGTGTGTC+GGG - chr1_4:5291955-5291974 Msa0145590:intron 30.0%
!!! TTTTTTTTCTTTCTTCCCAC+TGG - chr1_4:5292431-5292450 Msa0145590:intron 30.0%
TTAATGTATTGAAGCCATAG+CGG + chr1_4:5292561-5292580 None:intergenic 30.0%
CTCAATATTCTAAACGTTGA+GGG - chr1_4:5292808-5292827 Msa0145590:intron 30.0%
AGATACAAGGAAGAATAATG+AGG + chr1_4:5292858-5292877 None:intergenic 30.0%
! GCATAGTAAAAAGGTGTATT+TGG + chr1_4:5293014-5293033 None:intergenic 30.0%
AAACCTTCAGCATAGTAAAA+AGG + chr1_4:5293023-5293042 None:intergenic 30.0%
TATTGAGATACACTTGAACA+AGG + chr1_4:5293106-5293125 None:intergenic 30.0%
!!! ACTGATTGGTGTTTTAATGA+TGG + chr1_4:5293186-5293205 None:intergenic 30.0%
AAGACTCAGAAATTACTGAT+TGG + chr1_4:5293200-5293219 None:intergenic 30.0%
ATGTGTTAGCTATGAATGGA+TGG + chr1_4:5290876-5290895 None:intergenic 35.0%
CATTAATTACCGTGATGCTA+AGG - chr1_4:5291212-5291231 Msa0145590:three_prime_UTR 35.0%
! CTCAAATTACCAAGAGTGTA+TGG - chr1_4:5291724-5291743 Msa0145590:intron 35.0%
TGTGGTTACGTTCAATTTAC+AGG - chr1_4:5292018-5292037 Msa0145590:intron 35.0%
AATTGAATTCATCCAACGAC+TGG + chr1_4:5292221-5292240 None:intergenic 35.0%
TCTCGGTTGTTAGAATCTAA+CGG - chr1_4:5292263-5292282 Msa0145590:intron 35.0%
!! GTTTGGATGAAGAGTTTTGA+AGG + chr1_4:5292410-5292429 None:intergenic 35.0%
GGACTAATAAGAAAACCAGT+GGG + chr1_4:5292449-5292468 None:intergenic 35.0%
AGGACTAATAAGAAAACCAG+TGG + chr1_4:5292450-5292469 None:intergenic 35.0%
TGATGACAGATAGCAACATA+AGG + chr1_4:5292470-5292489 None:intergenic 35.0%
GTTGTACAGGAATATCTTCA+AGG - chr1_4:5292531-5292550 Msa0145590:intron 35.0%
GCTATGGCTTCAATACATTA+AGG - chr1_4:5292560-5292579 Msa0145590:intron 35.0%
! TAAGGTGCCCTTATTAACTT+TGG - chr1_4:5292578-5292597 Msa0145590:intron 35.0%
! AAGGTGCCCTTATTAACTTT+GGG - chr1_4:5292579-5292598 Msa0145590:intron 35.0%
! CCTCAACGTTTAGAATATTG+AGG + chr1_4:5292810-5292829 None:intergenic 35.0%
CCTCAATATTCTAAACGTTG+AGG - chr1_4:5292807-5292826 Msa0145590:intron 35.0%
AATATTCTAAACGTTGAGGG+TGG - chr1_4:5292811-5292830 Msa0145590:intron 35.0%
TAACCAACTACAGAGATACA+AGG + chr1_4:5292871-5292890 None:intergenic 35.0%
! GTTTCAGAACCATTGATTGT+AGG - chr1_4:5292897-5292916 Msa0145590:CDS 35.0%
TCAGTGAAACCTACAATCAA+TGG + chr1_4:5292909-5292928 None:intergenic 35.0%
ATTGATTGTAGGTTTCACTG+AGG - chr1_4:5292908-5292927 Msa0145590:CDS 35.0%
! GTAAAAAGGTGTATTTGGGT+TGG + chr1_4:5293009-5293028 None:intergenic 35.0%
! ACACCTTTTTACTATGCTGA+AGG - chr1_4:5293017-5293036 Msa0145590:CDS 35.0%
ATGTGTTAGCTATGAATGGA+TGG + chr1_4:5290876-5290895 None:intergenic 35.0%
CATTAATTACCGTGATGCTA+AGG - chr1_4:5291212-5291231 Msa0145590:three_prime_UTR 35.0%
! CTCAAATTACCAAGAGTGTA+TGG - chr1_4:5291724-5291743 Msa0145590:intron 35.0%
TGTGGTTACGTTCAATTTAC+AGG - chr1_4:5292018-5292037 Msa0145590:intron 35.0%
AATTGAATTCATCCAACGAC+TGG + chr1_4:5292221-5292240 None:intergenic 35.0%
TCTCGGTTGTTAGAATCTAA+CGG - chr1_4:5292263-5292282 Msa0145590:intron 35.0%
!! GTTTGGATGAAGAGTTTTGA+AGG + chr1_4:5292410-5292429 None:intergenic 35.0%
GGACTAATAAGAAAACCAGT+GGG + chr1_4:5292449-5292468 None:intergenic 35.0%
AGGACTAATAAGAAAACCAG+TGG + chr1_4:5292450-5292469 None:intergenic 35.0%
TGATGACAGATAGCAACATA+AGG + chr1_4:5292470-5292489 None:intergenic 35.0%
GTTGTACAGGAATATCTTCA+AGG - chr1_4:5292531-5292550 Msa0145590:intron 35.0%
GCTATGGCTTCAATACATTA+AGG - chr1_4:5292560-5292579 Msa0145590:intron 35.0%
! TAAGGTGCCCTTATTAACTT+TGG - chr1_4:5292578-5292597 Msa0145590:intron 35.0%
! AAGGTGCCCTTATTAACTTT+GGG - chr1_4:5292579-5292598 Msa0145590:intron 35.0%
! CCTCAACGTTTAGAATATTG+AGG + chr1_4:5292810-5292829 None:intergenic 35.0%
CCTCAATATTCTAAACGTTG+AGG - chr1_4:5292807-5292826 Msa0145590:intron 35.0%
AATATTCTAAACGTTGAGGG+TGG - chr1_4:5292811-5292830 Msa0145590:intron 35.0%
TAACCAACTACAGAGATACA+AGG + chr1_4:5292871-5292890 None:intergenic 35.0%
! GTTTCAGAACCATTGATTGT+AGG - chr1_4:5292897-5292916 Msa0145590:CDS 35.0%
TCAGTGAAACCTACAATCAA+TGG + chr1_4:5292909-5292928 None:intergenic 35.0%
ATTGATTGTAGGTTTCACTG+AGG - chr1_4:5292908-5292927 Msa0145590:CDS 35.0%
! GTAAAAAGGTGTATTTGGGT+TGG + chr1_4:5293009-5293028 None:intergenic 35.0%
! ACACCTTTTTACTATGCTGA+AGG - chr1_4:5293017-5293036 Msa0145590:CDS 35.0%
GTTAGCTATGAATGGATGGA+TGG + chr1_4:5290872-5290891 None:intergenic 40.0%
GGAAGATGTGAGAGATGATA+AGG + chr1_4:5290917-5290936 None:intergenic 40.0%
!!! TGTTTTGAGGTCAGCGATTT+CGG + chr1_4:5291079-5291098 None:intergenic 40.0%
TACGTCAAATCTAGACTTCC+TGG - chr1_4:5291099-5291118 Msa0145590:three_prime_UTR 40.0%
GTTGTTCTTCAAGAAGGAAC+TGG - chr1_4:5291180-5291199 Msa0145590:three_prime_UTR 40.0%
!! AGAGCTGAGTTGAGTGTTTT+TGG - chr1_4:5291498-5291517 Msa0145590:CDS 40.0%
!! GAGCTGAGTTGAGTGTTTTT+GGG - chr1_4:5291499-5291518 Msa0145590:CDS 40.0%
!!! TGAGTTGAGTGTTTTTGGGA+GGG - chr1_4:5291503-5291522 Msa0145590:CDS 40.0%
ATATGAAGCCCATACACTCT+TGG + chr1_4:5291736-5291755 None:intergenic 40.0%
TATCAAACATAAGTGGGAGC+CGG - chr1_4:5291812-5291831 Msa0145590:intron 40.0%
GAGATTGATACTCTGAGTCT+CGG - chr1_4:5292246-5292265 Msa0145590:intron 40.0%
CTCGGTTGTTAGAATCTAAC+GGG - chr1_4:5292264-5292283 Msa0145590:intron 40.0%
!!! AGTTTTGAAGGCAAAGTCGA+AGG + chr1_4:5292398-5292417 None:intergenic 40.0%
ATCTTCAAGGAAATCCGCTA+TGG - chr1_4:5292544-5292563 Msa0145590:intron 40.0%
! TGATGTGTTTGTTAAAGCCG+AGG - chr1_4:5292617-5292636 Msa0145590:intron 40.0%
! GATGTGTTTGTTAAAGCCGA+GGG - chr1_4:5292618-5292637 Msa0145590:intron 40.0%
!! AGAGTACCTTTGAGACAACA+AGG - chr1_4:5292717-5292736 Msa0145590:intron 40.0%
!! GAGTACCTTTGAGACAACAA+GGG - chr1_4:5292718-5292737 Msa0145590:intron 40.0%
CTTCCTTGTATCTCTGTAGT+TGG - chr1_4:5292865-5292884 Msa0145590:intron 40.0%
TTCACTGAGGCCTTTGTATT+CGG - chr1_4:5292921-5292940 Msa0145590:CDS 40.0%
AGAATAAGGAAACAAAGGGC+AGG + chr1_4:5292950-5292969 None:intergenic 40.0%
AGTATGGAATTGGGAAATGC+AGG - chr1_4:5292976-5292995 Msa0145590:CDS 40.0%
TACTATGCTGAAGGTTTCTC+TGG - chr1_4:5293026-5293045 Msa0145590:CDS 40.0%
GTTAGCTATGAATGGATGGA+TGG + chr1_4:5290872-5290891 None:intergenic 40.0%
GGAAGATGTGAGAGATGATA+AGG + chr1_4:5290917-5290936 None:intergenic 40.0%
!!! TGTTTTGAGGTCAGCGATTT+CGG + chr1_4:5291079-5291098 None:intergenic 40.0%
TACGTCAAATCTAGACTTCC+TGG - chr1_4:5291099-5291118 Msa0145590:three_prime_UTR 40.0%
GTTGTTCTTCAAGAAGGAAC+TGG - chr1_4:5291180-5291199 Msa0145590:three_prime_UTR 40.0%
!! AGAGCTGAGTTGAGTGTTTT+TGG - chr1_4:5291498-5291517 Msa0145590:CDS 40.0%
!! GAGCTGAGTTGAGTGTTTTT+GGG - chr1_4:5291499-5291518 Msa0145590:CDS 40.0%
!!! TGAGTTGAGTGTTTTTGGGA+GGG - chr1_4:5291503-5291522 Msa0145590:CDS 40.0%
ATATGAAGCCCATACACTCT+TGG + chr1_4:5291736-5291755 None:intergenic 40.0%
TATCAAACATAAGTGGGAGC+CGG - chr1_4:5291812-5291831 Msa0145590:intron 40.0%
GAGATTGATACTCTGAGTCT+CGG - chr1_4:5292246-5292265 Msa0145590:intron 40.0%
CTCGGTTGTTAGAATCTAAC+GGG - chr1_4:5292264-5292283 Msa0145590:intron 40.0%
!!! AGTTTTGAAGGCAAAGTCGA+AGG + chr1_4:5292398-5292417 None:intergenic 40.0%
ATCTTCAAGGAAATCCGCTA+TGG - chr1_4:5292544-5292563 Msa0145590:intron 40.0%
! TGATGTGTTTGTTAAAGCCG+AGG - chr1_4:5292617-5292636 Msa0145590:intron 40.0%
! GATGTGTTTGTTAAAGCCGA+GGG - chr1_4:5292618-5292637 Msa0145590:intron 40.0%
!! AGAGTACCTTTGAGACAACA+AGG - chr1_4:5292717-5292736 Msa0145590:intron 40.0%
!! GAGTACCTTTGAGACAACAA+GGG - chr1_4:5292718-5292737 Msa0145590:intron 40.0%
CTTCCTTGTATCTCTGTAGT+TGG - chr1_4:5292865-5292884 Msa0145590:intron 40.0%
TTCACTGAGGCCTTTGTATT+CGG - chr1_4:5292921-5292940 Msa0145590:CDS 40.0%
AGAATAAGGAAACAAAGGGC+AGG + chr1_4:5292950-5292969 None:intergenic 40.0%
AGTATGGAATTGGGAAATGC+AGG - chr1_4:5292976-5292995 Msa0145590:CDS 40.0%
TACTATGCTGAAGGTTTCTC+TGG - chr1_4:5293026-5293045 Msa0145590:CDS 40.0%
! TGGTTTGGAAGAGATGTTGG+AGG + chr1_4:5290959-5290978 None:intergenic 45.0%
!! GGTTGGTTTGGAAGAGATGT+TGG + chr1_4:5290962-5290981 None:intergenic 45.0%
! GAGAGAAAGAGTGGTTGGTT+TGG + chr1_4:5290974-5290993 None:intergenic 45.0%
TTGCAGTTACAGTGAGAGAG+GGG + chr1_4:5291032-5291051 None:intergenic 45.0%
GTTGCAGTTACAGTGAGAGA+GGG + chr1_4:5291033-5291052 None:intergenic 45.0%
TGTTGCAGTTACAGTGAGAG+AGG + chr1_4:5291034-5291053 None:intergenic 45.0%
!!! GTTTTGAGGTCAGCGATTTC+GGG + chr1_4:5291078-5291097 None:intergenic 45.0%
GTCAAATCTAGACTTCCTGG+TGG - chr1_4:5291102-5291121 Msa0145590:three_prime_UTR 45.0%
TTCGCCGCTCAAACTATCAT+CGG - chr1_4:5291126-5291145 Msa0145590:three_prime_UTR 45.0%
!! GGTACCGATGATAGTTTGAG+CGG + chr1_4:5291133-5291152 None:intergenic 45.0%
GCTCAAACTATCATCGGTAC+CGG - chr1_4:5291132-5291151 Msa0145590:three_prime_UTR 45.0%
! AATAGCAGTTTTCCGACGAC+CGG + chr1_4:5291154-5291173 None:intergenic 45.0%
! GCTCGTGTTGTTCTTCAAGA+AGG - chr1_4:5291174-5291193 Msa0145590:three_prime_UTR 45.0%
!!! CTGAGTTGAGTGTTTTTGGG+AGG - chr1_4:5291502-5291521 Msa0145590:CDS 45.0%
!!! TTGAGTGTTTTTGGGAGGGA+GGG - chr1_4:5291507-5291526 Msa0145590:CDS 45.0%
!!! GGGAGGGTTTTAGAAAGGAA+TGG - chr1_4:5291523-5291542 Msa0145590:CDS 45.0%
GTCTGATGTTCAACAAGCGT+CGG - chr1_4:5291645-5291664 Msa0145590:intron 45.0%
ATCAAACATAAGTGGGAGCC+GGG - chr1_4:5291813-5291832 Msa0145590:intron 45.0%
!! CTTTCTAAAACCCTTCCTCC+CGG + chr1_4:5291834-5291853 None:intergenic 45.0%
GACATTAACACGAACGCATG+TGG - chr1_4:5292000-5292019 Msa0145590:intron 45.0%
!!! CAACGACTGGCTTTTGATTG+AGG + chr1_4:5292208-5292227 None:intergenic 45.0%
CTCAATCAAAAGCCAGTCGT+TGG - chr1_4:5292206-5292225 Msa0145590:intron 45.0%
CAAAGCACGAGCAATACCAA+GGG + chr1_4:5292676-5292695 None:intergenic 45.0%
TATTGCTCGTGCTTTGCTGA+AGG - chr1_4:5292680-5292699 Msa0145590:intron 45.0%
GCTTTGCTGAAGGTTAGTGA+AGG - chr1_4:5292690-5292709 Msa0145590:intron 45.0%
! AGAAGCCCTTGTTGTCTCAA+AGG + chr1_4:5292726-5292745 None:intergenic 45.0%
!! GAGATTCTAGAGCTGTTGAG+AGG - chr1_4:5292751-5292770 Msa0145590:intron 45.0%
GCTGTTGAGAGGAAGAAAGT+TGG - chr1_4:5292762-5292781 Msa0145590:intron 45.0%
! TGGTTTGGAAGAGATGTTGG+AGG + chr1_4:5290959-5290978 None:intergenic 45.0%
!! GGTTGGTTTGGAAGAGATGT+TGG + chr1_4:5290962-5290981 None:intergenic 45.0%
! GAGAGAAAGAGTGGTTGGTT+TGG + chr1_4:5290974-5290993 None:intergenic 45.0%
TTGCAGTTACAGTGAGAGAG+GGG + chr1_4:5291032-5291051 None:intergenic 45.0%
GTTGCAGTTACAGTGAGAGA+GGG + chr1_4:5291033-5291052 None:intergenic 45.0%
TGTTGCAGTTACAGTGAGAG+AGG + chr1_4:5291034-5291053 None:intergenic 45.0%
!!! GTTTTGAGGTCAGCGATTTC+GGG + chr1_4:5291078-5291097 None:intergenic 45.0%
GTCAAATCTAGACTTCCTGG+TGG - chr1_4:5291102-5291121 Msa0145590:three_prime_UTR 45.0%
TTCGCCGCTCAAACTATCAT+CGG - chr1_4:5291126-5291145 Msa0145590:three_prime_UTR 45.0%
!! GGTACCGATGATAGTTTGAG+CGG + chr1_4:5291133-5291152 None:intergenic 45.0%
GCTCAAACTATCATCGGTAC+CGG - chr1_4:5291132-5291151 Msa0145590:three_prime_UTR 45.0%
! AATAGCAGTTTTCCGACGAC+CGG + chr1_4:5291154-5291173 None:intergenic 45.0%
! GCTCGTGTTGTTCTTCAAGA+AGG - chr1_4:5291174-5291193 Msa0145590:three_prime_UTR 45.0%
!!! CTGAGTTGAGTGTTTTTGGG+AGG - chr1_4:5291502-5291521 Msa0145590:CDS 45.0%
!!! TTGAGTGTTTTTGGGAGGGA+GGG - chr1_4:5291507-5291526 Msa0145590:CDS 45.0%
!!! GGGAGGGTTTTAGAAAGGAA+TGG - chr1_4:5291523-5291542 Msa0145590:CDS 45.0%
GTCTGATGTTCAACAAGCGT+CGG - chr1_4:5291645-5291664 Msa0145590:intron 45.0%
ATCAAACATAAGTGGGAGCC+GGG - chr1_4:5291813-5291832 Msa0145590:intron 45.0%
!! CTTTCTAAAACCCTTCCTCC+CGG + chr1_4:5291834-5291853 None:intergenic 45.0%
GACATTAACACGAACGCATG+TGG - chr1_4:5292000-5292019 Msa0145590:intron 45.0%
!!! CAACGACTGGCTTTTGATTG+AGG + chr1_4:5292208-5292227 None:intergenic 45.0%
CTCAATCAAAAGCCAGTCGT+TGG - chr1_4:5292206-5292225 Msa0145590:intron 45.0%
CAAAGCACGAGCAATACCAA+GGG + chr1_4:5292676-5292695 None:intergenic 45.0%
TATTGCTCGTGCTTTGCTGA+AGG - chr1_4:5292680-5292699 Msa0145590:intron 45.0%
GCTTTGCTGAAGGTTAGTGA+AGG - chr1_4:5292690-5292709 Msa0145590:intron 45.0%
! AGAAGCCCTTGTTGTCTCAA+AGG + chr1_4:5292726-5292745 None:intergenic 45.0%
!! GAGATTCTAGAGCTGTTGAG+AGG - chr1_4:5292751-5292770 Msa0145590:intron 45.0%
GCTGTTGAGAGGAAGAAAGT+TGG - chr1_4:5292762-5292781 Msa0145590:intron 45.0%
GGAGAAGGAGAGTGAAGAGA+GGG + chr1_4:5290938-5290957 None:intergenic 50.0%
AGGAGAAGGAGAGTGAAGAG+AGG + chr1_4:5290939-5290958 None:intergenic 50.0%
GGAAGAGATGTTGGAGGAGA+AGG + chr1_4:5290953-5290972 None:intergenic 50.0%
ACAGTGAGAGAGGGGAGTTT+GGG + chr1_4:5291024-5291043 None:intergenic 50.0%
TACAGTGAGAGAGGGGAGTT+TGG + chr1_4:5291025-5291044 None:intergenic 50.0%
!!! GTTGAGTGTTTTTGGGAGGG+AGG - chr1_4:5291506-5291525 Msa0145590:CDS 50.0%
!!! TGGGAGGGAGGGTTTTAGAA+AGG - chr1_4:5291518-5291537 Msa0145590:CDS 50.0%
!!! CGGGAGGAAGGGTTTTAGAA+AGG - chr1_4:5291832-5291851 Msa0145590:intron 50.0%
TGATTGAGGCAGGAGAGGAT+TGG + chr1_4:5292194-5292213 None:intergenic 50.0%
!! GCTTTTGATTGAGGCAGGAG+AGG + chr1_4:5292199-5292218 None:intergenic 50.0%
!!! GACTGGCTTTTGATTGAGGC+AGG + chr1_4:5292204-5292223 None:intergenic 50.0%
! GTGTTTGTTAAAGCCGAGGG+TGG - chr1_4:5292621-5292640 Msa0145590:intron 50.0%
TTTGTTAAAGCCGAGGGTGG+TGG - chr1_4:5292624-5292643 Msa0145590:intron 50.0%
GCAAAGCACGAGCAATACCA+AGG + chr1_4:5292677-5292696 None:intergenic 50.0%
GGGCAGGATTCCGAATACAA+AGG + chr1_4:5292934-5292953 None:intergenic 50.0%
GGAGAAGGAGAGTGAAGAGA+GGG + chr1_4:5290938-5290957 None:intergenic 50.0%
AGGAGAAGGAGAGTGAAGAG+AGG + chr1_4:5290939-5290958 None:intergenic 50.0%
GGAAGAGATGTTGGAGGAGA+AGG + chr1_4:5290953-5290972 None:intergenic 50.0%
ACAGTGAGAGAGGGGAGTTT+GGG + chr1_4:5291024-5291043 None:intergenic 50.0%
TACAGTGAGAGAGGGGAGTT+TGG + chr1_4:5291025-5291044 None:intergenic 50.0%
!!! GTTGAGTGTTTTTGGGAGGG+AGG - chr1_4:5291506-5291525 Msa0145590:CDS 50.0%
!!! TGGGAGGGAGGGTTTTAGAA+AGG - chr1_4:5291518-5291537 Msa0145590:CDS 50.0%
!!! CGGGAGGAAGGGTTTTAGAA+AGG - chr1_4:5291832-5291851 Msa0145590:intron 50.0%
TGATTGAGGCAGGAGAGGAT+TGG + chr1_4:5292194-5292213 None:intergenic 50.0%
!! GCTTTTGATTGAGGCAGGAG+AGG + chr1_4:5292199-5292218 None:intergenic 50.0%
!!! GACTGGCTTTTGATTGAGGC+AGG + chr1_4:5292204-5292223 None:intergenic 50.0%
! GTGTTTGTTAAAGCCGAGGG+TGG - chr1_4:5292621-5292640 Msa0145590:intron 50.0%
TTTGTTAAAGCCGAGGGTGG+TGG - chr1_4:5292624-5292643 Msa0145590:intron 50.0%
GCAAAGCACGAGCAATACCA+AGG + chr1_4:5292677-5292696 None:intergenic 50.0%
GGGCAGGATTCCGAATACAA+AGG + chr1_4:5292934-5292953 None:intergenic 50.0%
CTGGGGAGAGAAAGAGTGGT+TGG + chr1_4:5290979-5290998 None:intergenic 55.0%
!! GGTTCTGGGGAGAGAAAGAG+TGG + chr1_4:5290983-5291002 None:intergenic 55.0%
GAGAGAGGGAGAAGGTTCTG+GGG + chr1_4:5290996-5291015 None:intergenic 55.0%
CGAGAGAGGGAGAAGGTTCT+GGG + chr1_4:5290997-5291016 None:intergenic 55.0%
GAGTTTGGGAGAGCGAGAGA+GGG + chr1_4:5291010-5291029 None:intergenic 55.0%
!! GAGGTCAGCGATTTCGGGTT+CGG + chr1_4:5291073-5291092 None:intergenic 55.0%
!! CTATCATCGGTACCGGTCGT+CGG - chr1_4:5291139-5291158 Msa0145590:three_prime_UTR 55.0%
AAACATAAGTGGGAGCCGGG+AGG - chr1_4:5291816-5291835 Msa0145590:intron 55.0%
CAGCTACCTCTGCAGTTCAG+AGG + chr1_4:5292293-5292312 None:intergenic 55.0%
CTGAACTGCAGAGGTAGCTG+AGG - chr1_4:5292293-5292312 Msa0145590:intron 55.0%
TTGCCTGAGCTTGACCAGAG+AGG + chr1_4:5292650-5292669 None:intergenic 55.0%
CAAGCTCAGGCAATCACCCT+TGG - chr1_4:5292657-5292676 Msa0145590:intron 55.0%
CTGGGGAGAGAAAGAGTGGT+TGG + chr1_4:5290979-5290998 None:intergenic 55.0%
!! GGTTCTGGGGAGAGAAAGAG+TGG + chr1_4:5290983-5291002 None:intergenic 55.0%
GAGAGAGGGAGAAGGTTCTG+GGG + chr1_4:5290996-5291015 None:intergenic 55.0%
CGAGAGAGGGAGAAGGTTCT+GGG + chr1_4:5290997-5291016 None:intergenic 55.0%
GAGTTTGGGAGAGCGAGAGA+GGG + chr1_4:5291010-5291029 None:intergenic 55.0%
!! GAGGTCAGCGATTTCGGGTT+CGG + chr1_4:5291073-5291092 None:intergenic 55.0%
!! CTATCATCGGTACCGGTCGT+CGG - chr1_4:5291139-5291158 Msa0145590:three_prime_UTR 55.0%
AAACATAAGTGGGAGCCGGG+AGG - chr1_4:5291816-5291835 Msa0145590:intron 55.0%
CAGCTACCTCTGCAGTTCAG+AGG + chr1_4:5292293-5292312 None:intergenic 55.0%
CTGAACTGCAGAGGTAGCTG+AGG - chr1_4:5292293-5292312 Msa0145590:intron 55.0%
TTGCCTGAGCTTGACCAGAG+AGG + chr1_4:5292650-5292669 None:intergenic 55.0%
CAAGCTCAGGCAATCACCCT+TGG - chr1_4:5292657-5292676 Msa0145590:intron 55.0%
GCGAGAGAGGGAGAAGGTTC+TGG + chr1_4:5290998-5291017 None:intergenic 60.0%
GGAGTTTGGGAGAGCGAGAG+AGG + chr1_4:5291011-5291030 None:intergenic 60.0%
!! AGCGATTTCGGGTTCGGCAG+GGG + chr1_4:5291067-5291086 None:intergenic 60.0%
!! CAGCGATTTCGGGTTCGGCA+GGG + chr1_4:5291068-5291087 None:intergenic 60.0%
!! TCAGCGATTTCGGGTTCGGC+AGG + chr1_4:5291069-5291088 None:intergenic 60.0%
GTTTGAGCGGCGAATCCACC+AGG + chr1_4:5291120-5291139 None:intergenic 60.0%
ATAAGTGGGAGCCGGGAGGA+AGG - chr1_4:5291820-5291839 Msa0145590:intron 60.0%
TAAGTGGGAGCCGGGAGGAA+GGG - chr1_4:5291821-5291840 Msa0145590:intron 60.0%
GGGCAACCTCTGAACTGCAG+AGG - chr1_4:5292284-5292303 Msa0145590:intron 60.0%
TGGCCTCTCTGGTCAAGCTC+AGG - chr1_4:5292644-5292663 Msa0145590:intron 60.0%
GCGAGAGAGGGAGAAGGTTC+TGG + chr1_4:5290998-5291017 None:intergenic 60.0%
GGAGTTTGGGAGAGCGAGAG+AGG + chr1_4:5291011-5291030 None:intergenic 60.0%
!! AGCGATTTCGGGTTCGGCAG+GGG + chr1_4:5291067-5291086 None:intergenic 60.0%
!! CAGCGATTTCGGGTTCGGCA+GGG + chr1_4:5291068-5291087 None:intergenic 60.0%
!! TCAGCGATTTCGGGTTCGGC+AGG + chr1_4:5291069-5291088 None:intergenic 60.0%
GTTTGAGCGGCGAATCCACC+AGG + chr1_4:5291120-5291139 None:intergenic 60.0%
ATAAGTGGGAGCCGGGAGGA+AGG - chr1_4:5291820-5291839 Msa0145590:intron 60.0%
TAAGTGGGAGCCGGGAGGAA+GGG - chr1_4:5291821-5291840 Msa0145590:intron 60.0%
GGGCAACCTCTGAACTGCAG+AGG - chr1_4:5292284-5292303 Msa0145590:intron 60.0%
TGGCCTCTCTGGTCAAGCTC+AGG - chr1_4:5292644-5292663 Msa0145590:intron 60.0%
GGGAGAGCGAGAGAGGGAGA+AGG + chr1_4:5291004-5291023 None:intergenic 65.0%
ACCAGAGAGGCCACCACCCT+CGG + chr1_4:5292637-5292656 None:intergenic 65.0%
GGGAGAGCGAGAGAGGGAGA+AGG + chr1_4:5291004-5291023 None:intergenic 65.0%
ACCAGAGAGGCCACCACCCT+CGG + chr1_4:5292637-5292656 None:intergenic 65.0%
! GCCGAGGGTGGTGGCCTCTC+TGG - chr1_4:5292633-5292652 Msa0145590:intron 75.0%
! GCCGAGGGTGGTGGCCTCTC+TGG - chr1_4:5292633-5292652 Msa0145590:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5290838 5293262 5290838 ID=Msa0145590;Name=Msa0145590
chr1_4 mRNA 5290838 5293262 5290838 ID=Msa0145590-mRNA-1;Parent=Msa0145590;Name=Msa0145590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|2|435|205
chr1_4 exon 5290838 5291560 5290838 ID=Msa0145590-mRNA-1:exon:2216;Parent=Msa0145590-mRNA-1
chr1_4 exon 5292867 5293262 5292867 ID=Msa0145590-mRNA-1:exon:2215;Parent=Msa0145590-mRNA-1
chr1_4 five_prime_UTR 5293197 5293262 5293197 ID=Msa0145590-mRNA-1:five_prime_utr;Parent=Msa0145590-mRNA-1
chr1_4 CDS 5292867 5293196 5292867 ID=Msa0145590-mRNA-1:cds;Parent=Msa0145590-mRNA-1
chr1_4 CDS 5291273 5291560 5291273 ID=Msa0145590-mRNA-1:cds;Parent=Msa0145590-mRNA-1
chr1_4 three_prime_UTR 5290838 5291272 5290838 ID=Msa0145590-mRNA-1:three_prime_utr;Parent=Msa0145590-mRNA-1
Gene Sequence

>Msa0145590

ATGGCAGTTTCCTTATCATCTCTCACATCTTCCCTCTCTTCACTCTCCTTCTCCTCCAACATCTCTTCCAAACCAACCACTCTTTCTCTCCCCAGAACCTTCTCCCTCTCTCGCTCTCCCAAACTCCCCTCTCTCACTGTAACTGCAACAACACTCGCTTCCCCTGCCGAACCCGAAATCGCTGACCTCAAAACATACGTCAAATCTAGACTTCCTGGTGGATTCGCCGCTCAAACTATCATCGGTACCGGTCGTCGGAAAACTGCTATTGCTCGTGTTGTTCTTCAAGAAGGAACTGGAAAAATCGTCATTAATTACCGTGATGCTAAGGAATATCTTCAAGGAAATCCGCTATGGCTTCAATACATTAAGGTGCCCTTATTAACTTTGGGATATGAAACAAGTTATGATGTGTTTGTTAAAGCCGAGGGTGGTGGCCTCTCTGGTCAAGCTCAGGCAATCACCCTTGGTATTGCTCGTGCTTTGCTGAAGGTTAGTGAAGGTCATAGAGTACCTTTGAGACAACAAGGGCTTCTGACTAGAGATTCTAGAGCTGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCTCCTCAATATTCTAAACGTTGA

Protein sequence

>Msa0145590

MAVSLSSLTSSLSSLSFSSNISSKPTTLSLPRTFSLSRSPKLPSLTVTATTLASPAEPEIADLKTYVKSRLPGGFAAQTIIGTGRRKTAIARVVLQEGTGKIVINYRDAKEYLQGNPLWLQYIKVPLLTLGYETSYDVFVKAEGGGLSGQAQAITLGIARALLKVSEGHRVPLRQQGLLTRDSRAVERKKVGLKKARKAPQYSKR*