Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925330 | XP_003620949.2 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.61e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925330 | sp|Q8S8N6|PLA2A_ARATH | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 1.98e-70 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0925330 | 0.808721 | 2.695043e-50 | -8.615850e-47 |
| Msa0032130 | Msa0925330 | 0.807349 | 5.278382e-50 | -8.615850e-47 |
| Msa0032390 | Msa0925330 | 0.811147 | 8.095237e-51 | -8.615850e-47 |
| Msa0036810 | Msa0925330 | 0.809672 | 1.685538e-50 | -8.615850e-47 |
| Msa0045620 | Msa0925330 | 0.869608 | 2.725562e-66 | -8.615850e-47 |
| Msa0050530 | Msa0925330 | 0.806216 | 9.162294e-50 | -8.615850e-47 |
| Msa0063190 | Msa0925330 | 0.811353 | 7.304851e-51 | -8.615850e-47 |
| Msa0073270 | Msa0925330 | 0.815137 | 1.078639e-51 | -8.615850e-47 |
| Msa0080370 | Msa0925330 | 0.831876 | 1.301848e-55 | -8.615850e-47 |
| Msa0089540 | Msa0925330 | 0.820550 | 6.466051e-53 | -8.615850e-47 |
| Msa0100600 | Msa0925330 | 0.831248 | 1.858564e-55 | -8.615850e-47 |
| Msa0100890 | Msa0925330 | 0.825163 | 5.446192e-54 | -8.615850e-47 |
| Msa0108630 | Msa0925330 | 0.826270 | 2.974532e-54 | -8.615850e-47 |
| Msa0114600 | Msa0925330 | 0.805045 | 1.613231e-49 | -8.615850e-47 |
| Msa0605520 | Msa0925330 | 0.831081 | 2.042795e-55 | -8.615850e-47 |
| Msa0623310 | Msa0925330 | 0.859935 | 2.931740e-63 | -8.615850e-47 |
| Msa0626980 | Msa0925330 | 0.818573 | 1.827098e-52 | -8.615850e-47 |
| Msa0627360 | Msa0925330 | 0.809125 | 2.208894e-50 | -8.615850e-47 |
| Msa0658120 | Msa0925330 | 0.824764 | 6.761997e-54 | -8.615850e-47 |
| Msa0673940 | Msa0925330 | 0.817624 | 2.993971e-52 | -8.615850e-47 |
| Msa0685390 | Msa0925330 | -0.828314 | 9.632140e-55 | -8.615850e-47 |
| Msa0689830 | Msa0925330 | 0.819238 | 1.289878e-52 | -8.615850e-47 |
| Msa0702970 | Msa0925330 | 0.812397 | 4.327062e-51 | -8.615850e-47 |
| Msa0751720 | Msa0925330 | 0.830804 | 2.389691e-55 | -8.615850e-47 |
| Msa0756330 | Msa0925330 | 0.815861 | 7.439829e-52 | -8.615850e-47 |
| Msa0767280 | Msa0925330 | 0.810718 | 1.002530e-50 | -8.615850e-47 |
| Msa0771910 | Msa0925330 | 0.821821 | 3.292424e-53 | -8.615850e-47 |
| Msa0774060 | Msa0925330 | 0.801799 | 7.592655e-49 | -8.615850e-47 |
| Msa0831820 | Msa0925330 | 0.827883 | 1.223311e-54 | -8.615850e-47 |
| Msa0835750 | Msa0925330 | 0.812343 | 4.446230e-51 | -8.615850e-47 |
| Msa0121470 | Msa0925330 | 0.821510 | 3.886197e-53 | -8.615850e-47 |
| Msa0121490 | Msa0925330 | 0.816858 | 4.452107e-52 | -8.615850e-47 |
| Msa0131810 | Msa0925330 | 0.825632 | 4.216438e-54 | -8.615850e-47 |
| Msa0168380 | Msa0925330 | 0.810864 | 9.324002e-51 | -8.615850e-47 |
| Msa0173250 | Msa0925330 | 0.856727 | 2.646281e-62 | -8.615850e-47 |
| Msa0185690 | Msa0925330 | 0.813960 | 1.964512e-51 | -8.615850e-47 |
| Msa0206370 | Msa0925330 | 0.839497 | 1.529919e-57 | -8.615850e-47 |
| Msa0368920 | Msa0925330 | 0.820357 | 7.158099e-53 | -8.615850e-47 |
| Msa0372100 | Msa0925330 | 0.815591 | 8.549096e-52 | -8.615850e-47 |
| Msa0388250 | Msa0925330 | 0.806787 | 6.941579e-50 | -8.615850e-47 |
| Msa0396000 | Msa0925330 | 0.803394 | 3.559856e-49 | -8.615850e-47 |
| Msa0401060 | Msa0925330 | 0.863667 | 2.113470e-64 | -8.615850e-47 |
| Msa0416210 | Msa0925330 | 0.849233 | 3.687975e-60 | -8.615850e-47 |
| Msa0419710 | Msa0925330 | 0.810399 | 1.175497e-50 | -8.615850e-47 |
| Msa0433630 | Msa0925330 | 0.822921 | 1.829122e-53 | -8.615850e-47 |
| Msa0437480 | Msa0925330 | 0.816150 | 6.415363e-52 | -8.615850e-47 |
| Msa0440350 | Msa0925330 | 0.809157 | 2.174212e-50 | -8.615850e-47 |
| Msa0447870 | Msa0925330 | 0.848741 | 5.052228e-60 | -8.615850e-47 |
| Msa0450150 | Msa0925330 | 0.823115 | 1.647441e-53 | -8.615850e-47 |
| Msa0467250 | Msa0925330 | 0.821136 | 4.739308e-53 | -8.615850e-47 |
| Msa0260980 | Msa0925330 | 0.815452 | 9.177554e-52 | -8.615850e-47 |
| Msa0331110 | Msa0925330 | 0.804186 | 2.437476e-49 | -8.615850e-47 |
| Msa0336460 | Msa0925330 | 0.812612 | 3.884462e-51 | -8.615850e-47 |
| Msa0336520 | Msa0925330 | 0.807493 | 4.921333e-50 | -8.615850e-47 |
| Msa0354840 | Msa0925330 | 0.818317 | 2.087353e-52 | -8.615850e-47 |
| Msa0356640 | Msa0925330 | 0.834242 | 3.357131e-56 | -8.615850e-47 |
| Msa0495620 | Msa0925330 | 0.842680 | 2.230560e-58 | -8.615850e-47 |
| Msa0521510 | Msa0925330 | 0.817633 | 2.980109e-52 | -8.615850e-47 |
| Msa0530660 | Msa0925330 | 0.813161 | 2.943989e-51 | -8.615850e-47 |
| Msa0552570 | Msa0925330 | 0.800906 | 1.156721e-48 | -8.615850e-47 |
| Msa0553750 | Msa0925330 | 0.811806 | 5.821988e-51 | -8.615850e-47 |
| Msa0566460 | Msa0925330 | 0.831534 | 1.580605e-55 | -8.615850e-47 |
| Msa0568460 | Msa0925330 | -0.801014 | 1.099248e-48 | -8.615850e-47 |
| Msa0573550 | Msa0925330 | 0.804478 | 2.118684e-49 | -8.615850e-47 |
| Msa0587180 | Msa0925330 | 0.825065 | 5.743926e-54 | -8.615850e-47 |
| Msa0846900 | Msa0925330 | 0.837936 | 3.872900e-57 | -8.615850e-47 |
| Msa0850600 | Msa0925330 | 0.811757 | 5.966248e-51 | -8.615850e-47 |
| Msa0925330 | Msa0966120 | 0.980935 | 2.216895e-151 | -8.615850e-47 |
| Msa0925330 | Msa0987670 | 0.810363 | 1.196378e-50 | -8.615850e-47 |
| Msa0925330 | Msa1001620 | 0.916913 | 1.003727e-85 | -8.615850e-47 |
| Msa0925330 | Msa1019180 | 0.812204 | 4.769592e-51 | -8.615850e-47 |
| Msa0925330 | Msa1021560 | 0.812753 | 3.617921e-51 | -8.615850e-47 |
| Msa0925330 | Msa1025200 | 0.824016 | 1.014040e-53 | -8.615850e-47 |
| Msa0925330 | Msa1025220 | 0.805528 | 1.278323e-49 | -8.615850e-47 |
| Msa0925330 | Msa1038860 | 0.809180 | 2.149624e-50 | -8.615850e-47 |
| Msa0925330 | Msa1078080 | 0.804559 | 2.038225e-49 | -8.615850e-47 |
| Msa0925330 | Msa1127200 | 0.834771 | 2.471240e-56 | -8.615850e-47 |
| Msa0925330 | Msa1148930 | 0.807108 | 5.938435e-50 | -8.615850e-47 |
| Msa0925330 | Msa1165460 | 0.815036 | 1.135321e-51 | -8.615850e-47 |
| Msa0925330 | Msa1166670 | 0.820693 | 5.993172e-53 | -8.615850e-47 |
| Msa0925330 | Msa1180840 | 0.826297 | 2.930736e-54 | -8.615850e-47 |
| Msa0925330 | Msa1186260 | 0.801791 | 7.622246e-49 | -8.615850e-47 |
| Msa0925330 | Msa1188340 | 0.803815 | 2.911598e-49 | -8.615850e-47 |
| Msa0925330 | Msa1206040 | 0.816514 | 5.317997e-52 | -8.615850e-47 |
| Msa0925330 | Msa1217890 | 0.802812 | 4.697700e-49 | -8.615850e-47 |
| Msa0925330 | Msa1220580 | 0.838279 | 3.161231e-57 | -8.615850e-47 |
| Msa0925330 | Msa1231490 | 0.810693 | 1.015467e-50 | -8.615850e-47 |
| Msa0925330 | Msa1240940 | 0.820306 | 7.354009e-53 | -8.615850e-47 |
| Msa0925330 | Msa1254420 | 0.803202 | 3.900410e-49 | -8.615850e-47 |
| Msa0925330 | Msa1282300 | 0.833125 | 6.383101e-56 | -8.615850e-47 |
| Msa0925330 | Msa1297070 | 0.818044 | 2.406339e-52 | -8.615850e-47 |
| Msa0925330 | Msa1328870 | 0.813604 | 2.352863e-51 | -8.615850e-47 |
| Msa0925330 | Msa1334560 | 0.850376 | 1.767764e-60 | -8.615850e-47 |
| Msa0925330 | Msa1342760 | 0.803167 | 3.966296e-49 | -8.615850e-47 |
| Msa0925330 | Msa1368170 | 0.834721 | 2.543834e-56 | -8.615850e-47 |
| Msa0925330 | Msa1371800 | 0.865647 | 5.075037e-65 | -8.615850e-47 |
| Msa0925330 | Msa1372030 | 0.810158 | 1.324731e-50 | -8.615850e-47 |
| Msa0925330 | Msa1376310 | 0.869929 | 2.142267e-66 | -8.615850e-47 |
| Msa0925330 | Msa1385570 | 0.819590 | 1.072373e-52 | -8.615850e-47 |
| Msa0925330 | Msa1389820 | 0.802947 | 4.404676e-49 | -8.615850e-47 |
| Msa0925330 | Msa1395050 | 0.821660 | 3.587922e-53 | -8.615850e-47 |
| Msa0925330 | Msa1398490 | 0.806616 | 7.545494e-50 | -8.615850e-47 |
| Msa0925330 | Msa1402010 | 0.842031 | 3.314386e-58 | -8.615850e-47 |
| Msa0925330 | Msa1420830 | 0.808202 | 3.477906e-50 | -8.615850e-47 |
| Msa0925330 | Msa1438510 | 0.819690 | 1.017573e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925330 | MtrunA17_Chr6g0488641 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.48e-115 | 323 |
| Msa0925330 | MtrunA17_Chr8g0389171 | 62.676 | 142 | 53 | 0 | 12 | 153 | 4 | 145 | 4.43e-65 | 196 |
| Msa0925330 | MtrunA17_Chr6g0488021 | 45.679 | 81 | 34 | 2 | 39 | 119 | 113 | 183 | 2.89e-17 | 75.5 |
| Msa0925330 | MtrunA17_Chr6g0488001 | 42.391 | 92 | 43 | 2 | 4 | 95 | 50 | 131 | 3.93e-15 | 69.3 |
| Msa0925330 | MtrunA17_Chr6g0488031 | 37.500 | 88 | 52 | 2 | 62 | 149 | 3 | 87 | 1.07e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925330 | AT2G06925.1 | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 2.02e-71 | 212 |
| Msa0925330 | AT2G06925.2 | 65.306 | 147 | 44 | 1 | 7 | 153 | 5 | 144 | 2.26e-68 | 204 |
| Msa0925330 | AT2G19690.3 | 54.839 | 62 | 27 | 1 | 39 | 100 | 23 | 83 | 2.91e-18 | 75.5 |
| Msa0925330 | AT2G19690.1 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 4.98e-18 | 76.3 |
| Msa0925330 | AT2G19690.2 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 5.49e-18 | 75.9 |
| Msa0925330 | AT4G29460.1 | 46.914 | 81 | 40 | 2 | 41 | 121 | 23 | 100 | 7.78e-18 | 76.6 |
| Msa0925330 | AT4G29470.1 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
| Msa0925330 | AT4G29470.2 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
Find 32 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGAGAGTAATTGAAATT+TGG | 0.260893 | 6_2:+68313200 | None:intergenic |
| TGTCATGGAAGCTGCTTTAC+TGG | 0.266457 | 6_2:-68311684 | Msa0925330:CDS |
| AAATTTGGTTTCGGATTTAT+AGG | 0.284707 | 6_2:+68313215 | None:intergenic |
| CCATGCAGTCTATGAATGTT+TGG | 0.339978 | 6_2:+68311786 | None:intergenic |
| AGTAGGCAAGATTACTGCTT+AGG | 0.360692 | 6_2:+68311640 | None:intergenic |
| GTGCCTCCATTGTTGAGATA+TGG | 0.393871 | 6_2:-68312808 | Msa0925330:CDS |
| TGCCTACTAATCAAGTCTTA+TGG | 0.394596 | 6_2:-68311625 | Msa0925330:three_prime_UTR |
| GAGTAATTGAAATTTGGTTT+CGG | 0.430357 | 6_2:+68313206 | None:intergenic |
| TGTGAGTCAAGTTTCTGTTC+AGG | 0.441225 | 6_2:-68312902 | Msa0925330:intron |
| AAGAAAGCTTTGTTTGTGGC+AGG | 0.453156 | 6_2:+68313299 | None:intergenic |
| CATGTGTTTCCTTTGAATGT+AGG | 0.457173 | 6_2:+68311740 | None:intergenic |
| TGCCATAAGACTTGATTAGT+AGG | 0.462270 | 6_2:+68311623 | None:intergenic |
| GTAGGCAAGATTACTGCTTA+GGG | 0.479026 | 6_2:+68311641 | None:intergenic |
| TTTGGCTGCACTGCTGACTT+AGG | 0.479097 | 6_2:+68311804 | None:intergenic |
| CTCAAAGAAAGCTTTGTTTG+TGG | 0.481367 | 6_2:+68313295 | None:intergenic |
| CATGTTTATGCACTTAACAT+AGG | 0.509197 | 6_2:-68313070 | Msa0925330:CDS |
| ATGGAAGCTGCTTTACTGGC+TGG | 0.510582 | 6_2:-68311680 | Msa0925330:CDS |
| ACAAAGGCTCCTACATTCAA+AGG | 0.530546 | 6_2:-68311749 | Msa0925330:CDS |
| TACTGTGGACTATTGTATAG+TGG | 0.545854 | 6_2:-68312781 | Msa0925330:CDS |
| CTTCAATAACATCATCTGCT+TGG | 0.548099 | 6_2:+68311717 | None:intergenic |
| TGAAGTTATCAAGATTGTCA+TGG | 0.550055 | 6_2:-68311699 | Msa0925330:CDS |
| AAAGCTTTGTTTGTGGCAGG+TGG | 0.556158 | 6_2:+68313302 | None:intergenic |
| CCAAACATTCATAGACTGCA+TGG | 0.586577 | 6_2:-68311786 | Msa0925330:CDS |
| CTATTGTATAGTGGATGCCC+TGG | 0.587699 | 6_2:-68312772 | Msa0925330:CDS |
| AACATAGGTGCTGAAACCAC+TGG | 0.598513 | 6_2:-68313055 | Msa0925330:CDS |
| CTCACACATGAAAATAAACA+TGG | 0.610697 | 6_2:-68313152 | Msa0925330:exon |
| TACTTTCCATATCTCAACAA+TGG | 0.617587 | 6_2:+68312802 | None:intergenic |
| GTTAAGTGCATAAACATGAG+TGG | 0.652688 | 6_2:+68313075 | None:intergenic |
| AACTGAAACAGCTACTCCAG+TGG | 0.671963 | 6_2:+68313039 | None:intergenic |
| TTTCCATATCTCAACAATGG+AGG | 0.673712 | 6_2:+68312805 | None:intergenic |
| TTGAGATATGGAAAGTACTG+TGG | 0.689516 | 6_2:-68312796 | Msa0925330:CDS |
| CAAGCATCTAGACCATCACA+AGG | 0.698237 | 6_2:+68312742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_2:68311842-68311861 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_2:68312411-68312430 | Msa0925330:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_2:68312537-68312556 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_2:68313320-68313339 | Msa0925330:five_prime_UTR | 10.0% |
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_2:68311842-68311861 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_2:68312411-68312430 | Msa0925330:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_2:68312537-68312556 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_2:68313320-68313339 | Msa0925330:five_prime_UTR | 10.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_2:68312487-68312506 | Msa0925330:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_2:68312491-68312510 | Msa0925330:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_2:68313244-68313263 | None:intergenic | 15.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_2:68312487-68312506 | Msa0925330:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_2:68312491-68312510 | Msa0925330:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_2:68313244-68313263 | None:intergenic | 15.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_2:68312244-68312263 | Msa0925330:intron | 20.0% |
| !! | TATGGATAGTCAAAAAATTT+AGG | - | chr6_2:68312307-68312326 | Msa0925330:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+AGG | + | chr6_2:68312336-68312355 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_2:68312547-68312566 | Msa0925330:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_2:68312600-68312619 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_2:68312625-68312644 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_2:68312729-68312748 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_2:68312770-68312789 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_2:68312771-68312790 | None:intergenic | 20.0% |
| !!! | TTTTTTGCTATACTTTATGT+TGG | - | chr6_2:68312805-68312824 | Msa0925330:CDS | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_2:68312835-68312854 | None:intergenic | 20.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_2:68312244-68312263 | Msa0925330:intron | 20.0% |
| !! | TATGGATAGTCAAAAAATTT+AGG | - | chr6_2:68312307-68312326 | Msa0925330:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+AGG | + | chr6_2:68312336-68312355 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_2:68312547-68312566 | Msa0925330:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_2:68312600-68312619 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_2:68312625-68312644 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_2:68312729-68312748 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_2:68312770-68312789 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_2:68312771-68312790 | None:intergenic | 20.0% |
| !!! | TTTTTTGCTATACTTTATGT+TGG | - | chr6_2:68312805-68312824 | Msa0925330:CDS | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_2:68312835-68312854 | None:intergenic | 20.0% |
| !! | AAATTTGGTTTCGGATTTAT+AGG | + | chr6_2:68311618-68311637 | None:intergenic | 25.0% |
| !! | GAGTAATTGAAATTTGGTTT+CGG | + | chr6_2:68311627-68311646 | None:intergenic | 25.0% |
| ! | AAGTGAGAGTAATTGAAATT+TGG | + | chr6_2:68311633-68311652 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_2:68311991-68312010 | Msa0925330:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_2:68312218-68312237 | None:intergenic | 25.0% |
| !!! | ATAGCTTTTAGGATTGAATT+AGG | + | chr6_2:68312288-68312307 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_2:68312289-68312308 | Msa0925330:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_2:68312494-68312513 | Msa0925330:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_2:68312601-68312620 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_2:68312626-68312645 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_2:68312626-68312645 | Msa0925330:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_2:68312795-68312814 | None:intergenic | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_2:68312917-68312936 | None:intergenic | 25.0% |
| !! | AAATTTGGTTTCGGATTTAT+AGG | + | chr6_2:68311618-68311637 | None:intergenic | 25.0% |
| !! | GAGTAATTGAAATTTGGTTT+CGG | + | chr6_2:68311627-68311646 | None:intergenic | 25.0% |
| ! | AAGTGAGAGTAATTGAAATT+TGG | + | chr6_2:68311633-68311652 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_2:68311991-68312010 | Msa0925330:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_2:68312218-68312237 | None:intergenic | 25.0% |
| !!! | ATAGCTTTTAGGATTGAATT+AGG | + | chr6_2:68312288-68312307 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_2:68312289-68312308 | Msa0925330:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_2:68312494-68312513 | Msa0925330:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_2:68312601-68312620 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_2:68312626-68312645 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_2:68312626-68312645 | Msa0925330:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_2:68312795-68312814 | None:intergenic | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_2:68312917-68312936 | None:intergenic | 25.0% |
| !! | TTTATTTTCATGTGTGAGTG+TGG | + | chr6_2:68311676-68311695 | None:intergenic | 30.0% |
| CTCACACATGAAAATAAACA+TGG | - | chr6_2:68311678-68311697 | Msa0925330:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_2:68311760-68311779 | Msa0925330:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_2:68311896-68311915 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_2:68312031-68312050 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_2:68312129-68312148 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_2:68312299-68312318 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_2:68312441-68312460 | Msa0925330:intron | 30.0% | |
| TTTGTGTGTTTGATATCAAG+TGG | + | chr6_2:68312474-68312493 | None:intergenic | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_2:68312777-68312796 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_2:68312774-68312793 | Msa0925330:CDS | 30.0% |
| ! | TTTGCTATACTTTATGTTGG+TGG | - | chr6_2:68312808-68312827 | Msa0925330:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_2:68312911-68312930 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_2:68313055-68313074 | Msa0925330:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_2:68313065-68313084 | Msa0925330:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_2:68313131-68313150 | Msa0925330:CDS | 30.0% | |
| !! | TTTATTTTCATGTGTGAGTG+TGG | + | chr6_2:68311676-68311695 | None:intergenic | 30.0% |
| CTCACACATGAAAATAAACA+TGG | - | chr6_2:68311678-68311697 | Msa0925330:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_2:68311760-68311779 | Msa0925330:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_2:68311896-68311915 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_2:68312031-68312050 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_2:68312129-68312148 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_2:68312299-68312318 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_2:68312441-68312460 | Msa0925330:intron | 30.0% | |
| TTTGTGTGTTTGATATCAAG+TGG | + | chr6_2:68312474-68312493 | None:intergenic | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_2:68312777-68312796 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_2:68312774-68312793 | Msa0925330:CDS | 30.0% |
| ! | TTTGCTATACTTTATGTTGG+TGG | - | chr6_2:68312808-68312827 | Msa0925330:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_2:68312911-68312930 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_2:68313055-68313074 | Msa0925330:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_2:68313065-68313084 | Msa0925330:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_2:68313131-68313150 | Msa0925330:CDS | 30.0% | |
| !! | CTCAAAGAAAGCTTTGTTTG+TGG | + | chr6_2:68311538-68311557 | None:intergenic | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_2:68311758-68311777 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_2:68312028-68312047 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_2:68312034-68312053 | Msa0925330:intron | 35.0% |
| ! | TACTGTGGACTATTGTATAG+TGG | - | chr6_2:68312049-68312068 | Msa0925330:intron | 35.0% |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_2:68312557-68312576 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_2:68312573-68312592 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_2:68312618-68312637 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_2:68312685-68312704 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_2:68312865-68312884 | Msa0925330:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_2:68312984-68313003 | Msa0925330:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_2:68313093-68313112 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_2:68313116-68313135 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_2:68313205-68313224 | Msa0925330:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_2:68313210-68313229 | None:intergenic | 35.0% | |
| !! | CTCAAAGAAAGCTTTGTTTG+TGG | + | chr6_2:68311538-68311557 | None:intergenic | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_2:68311758-68311777 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_2:68312028-68312047 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_2:68312034-68312053 | Msa0925330:intron | 35.0% |
| ! | TACTGTGGACTATTGTATAG+TGG | - | chr6_2:68312049-68312068 | Msa0925330:intron | 35.0% |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_2:68312557-68312576 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_2:68312573-68312592 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_2:68312618-68312637 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_2:68312685-68312704 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_2:68312865-68312884 | Msa0925330:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_2:68312984-68313003 | Msa0925330:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_2:68313093-68313112 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_2:68313116-68313135 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_2:68313205-68313224 | Msa0925330:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_2:68313210-68313229 | None:intergenic | 35.0% | |
| !! | AAGAAAGCTTTGTTTGTGGC+AGG | + | chr6_2:68311534-68311553 | None:intergenic | 40.0% |
| TGTGAGTCAAGTTTCTGTTC+AGG | - | chr6_2:68311928-68311947 | Msa0925330:intron | 40.0% | |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_2:68312078-68312097 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_2:68312580-68312599 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_2:68312677-68312696 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_2:68312679-68312698 | Msa0925330:intron | 40.0% | |
| GTTTGGTATCCTACACATGT+TGG | - | chr6_2:68312882-68312901 | Msa0925330:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_2:68313047-68313066 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_2:68313044-68313063 | Msa0925330:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_2:68313081-68313100 | Msa0925330:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_2:68313192-68313211 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_2:68313193-68313212 | None:intergenic | 40.0% | |
| !! | AAGAAAGCTTTGTTTGTGGC+AGG | + | chr6_2:68311534-68311553 | None:intergenic | 40.0% |
| TGTGAGTCAAGTTTCTGTTC+AGG | - | chr6_2:68311928-68311947 | Msa0925330:intron | 40.0% | |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_2:68312078-68312097 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_2:68312580-68312599 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_2:68312677-68312696 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_2:68312679-68312698 | Msa0925330:intron | 40.0% | |
| GTTTGGTATCCTACACATGT+TGG | - | chr6_2:68312882-68312901 | Msa0925330:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_2:68313047-68313066 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_2:68313044-68313063 | Msa0925330:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_2:68313081-68313100 | Msa0925330:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_2:68313192-68313211 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_2:68313193-68313212 | None:intergenic | 40.0% | |
| !! | AAAGCTTTGTTTGTGGCAGG+TGG | + | chr6_2:68311531-68311550 | None:intergenic | 45.0% |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_2:68311775-68311794 | Msa0925330:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_2:68311794-68311813 | None:intergenic | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_2:68312022-68312041 | Msa0925330:intron | 45.0% | |
| !! | CTATTGTATAGTGGATGCCC+TGG | - | chr6_2:68312058-68312077 | Msa0925330:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_2:68312079-68312098 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_2:68312076-68312095 | Msa0925330:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_2:68312091-68312110 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_2:68312670-68312689 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_2:68312671-68312690 | None:intergenic | 45.0% |
| TATCGGACACCAACATGTGT+AGG | + | chr6_2:68312894-68312913 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_2:68313012-68313031 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_2:68313146-68313165 | Msa0925330:CDS | 45.0% |
| !! | AAAGCTTTGTTTGTGGCAGG+TGG | + | chr6_2:68311531-68311550 | None:intergenic | 45.0% |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_2:68311775-68311794 | Msa0925330:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_2:68311794-68311813 | None:intergenic | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_2:68312022-68312041 | Msa0925330:intron | 45.0% | |
| !! | CTATTGTATAGTGGATGCCC+TGG | - | chr6_2:68312058-68312077 | Msa0925330:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_2:68312079-68312098 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_2:68312076-68312095 | Msa0925330:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_2:68312091-68312110 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_2:68312670-68312689 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_2:68312671-68312690 | None:intergenic | 45.0% |
| TATCGGACACCAACATGTGT+AGG | + | chr6_2:68312894-68312913 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_2:68313012-68313031 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_2:68313146-68313165 | Msa0925330:CDS | 45.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_2:68313029-68313048 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_2:68313150-68313169 | Msa0925330:exon | 50.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_2:68313029-68313048 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_2:68313150-68313169 | Msa0925330:exon | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 68311494 | 68313358 | 68311494 | ID=Msa0925330;Name=Msa0925330 |
| chr6_2 | mRNA | 68311494 | 68313358 | 68311494 | ID=Msa0925330-mRNA-1;Parent=Msa0925330;Name=Msa0925330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=191|1|1|1|1|1|4|164|157 |
| chr6_2 | exon | 68311494 | 68311833 | 68311494 | ID=Msa0925330-mRNA-1:exon:10893;Parent=Msa0925330-mRNA-1 |
| chr6_2 | exon | 68312704 | 68312829 | 68312704 | ID=Msa0925330-mRNA-1:exon:10892;Parent=Msa0925330-mRNA-1 |
| chr6_2 | exon | 68312903 | 68312945 | 68312903 | ID=Msa0925330-mRNA-1:exon:10891;Parent=Msa0925330-mRNA-1 |
| chr6_2 | exon | 68313039 | 68313358 | 68313039 | ID=Msa0925330-mRNA-1:exon:10890;Parent=Msa0925330-mRNA-1 |
| chr6_2 | five_prime_UTR | 68313168 | 68313358 | 68313168 | ID=Msa0925330-mRNA-1:five_prime_utr;Parent=Msa0925330-mRNA-1 |
| chr6_2 | CDS | 68313039 | 68313167 | 68313039 | ID=Msa0925330-mRNA-1:cds;Parent=Msa0925330-mRNA-1 |
| chr6_2 | CDS | 68312903 | 68312945 | 68312903 | ID=Msa0925330-mRNA-1:cds;Parent=Msa0925330-mRNA-1 |
| chr6_2 | CDS | 68312704 | 68312829 | 68312704 | ID=Msa0925330-mRNA-1:cds;Parent=Msa0925330-mRNA-1 |
| chr6_2 | CDS | 68311658 | 68311833 | 68311658 | ID=Msa0925330-mRNA-1:cds;Parent=Msa0925330-mRNA-1 |
| chr6_2 | three_prime_UTR | 68311494 | 68311657 | 68311494 | ID=Msa0925330-mRNA-1:three_prime_utr;Parent=Msa0925330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
