Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058580 | XP_012569335.1 | 76.779 | 267 | 60 | 2 | 1 | 267 | 1 | 265 | 2.98e-140 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058580 | A0A1S3E0R6 | 76.779 | 267 | 60 | 2 | 1 | 267 | 1 | 265 | 1.43e-140 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa1058580 | -0.805085 | 1.582467e-49 | -8.615850e-47 |
| Msa0006390 | Msa1058580 | 0.818459 | 1.938415e-52 | -8.615850e-47 |
| Msa0011500 | Msa1058580 | 0.804623 | 1.976949e-49 | -8.615850e-47 |
| Msa0014710 | Msa1058580 | 0.811515 | 6.736776e-51 | -8.615850e-47 |
| Msa0043560 | Msa1058580 | 0.803267 | 3.783061e-49 | -8.615850e-47 |
| Msa0048000 | Msa1058580 | 0.804186 | 2.437750e-49 | -8.615850e-47 |
| Msa0064110 | Msa1058580 | 0.816109 | 6.550093e-52 | -8.615850e-47 |
| Msa0077450 | Msa1058580 | 0.805195 | 1.501075e-49 | -8.615850e-47 |
| Msa0078610 | Msa1058580 | 0.812976 | 3.233311e-51 | -8.615850e-47 |
| Msa0626220 | Msa1058580 | 0.835104 | 2.038076e-56 | -8.615850e-47 |
| Msa0626280 | Msa1058580 | 0.826617 | 2.459060e-54 | -8.615850e-47 |
| Msa0627350 | Msa1058580 | 0.805403 | 1.357563e-49 | -8.615850e-47 |
| Msa0648520 | Msa1058580 | 0.803360 | 3.618616e-49 | -8.615850e-47 |
| Msa0679550 | Msa1058580 | 0.809902 | 1.503943e-50 | -8.615850e-47 |
| Msa0682550 | Msa1058580 | 0.837644 | 4.601578e-57 | -8.615850e-47 |
| Msa0685750 | Msa1058580 | 0.805104 | 1.567938e-49 | -8.615850e-47 |
| Msa0688070 | Msa1058580 | 0.809723 | 1.643790e-50 | -8.615850e-47 |
| Msa0691050 | Msa1058580 | 0.811274 | 7.598413e-51 | -8.615850e-47 |
| Msa0693380 | Msa1058580 | 0.822799 | 1.952636e-53 | -8.615850e-47 |
| Msa0760130 | Msa1058580 | 0.807467 | 4.983454e-50 | -8.615850e-47 |
| Msa0794510 | Msa1058580 | -0.814648 | 1.384119e-51 | -8.615850e-47 |
| Msa0821800 | Msa1058580 | 0.806482 | 8.052240e-50 | -8.615850e-47 |
| Msa0123100 | Msa1058580 | 0.817570 | 3.079037e-52 | -8.615850e-47 |
| Msa0139700 | Msa1058580 | 0.803327 | 3.676007e-49 | -8.615850e-47 |
| Msa0170140 | Msa1058580 | 0.811001 | 8.709132e-51 | -8.615850e-47 |
| Msa0178510 | Msa1058580 | 0.804520 | 2.076361e-49 | -8.615850e-47 |
| Msa0200560 | Msa1058580 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
| Msa0210450 | Msa1058580 | 0.808654 | 2.785680e-50 | -8.615850e-47 |
| Msa0220580 | Msa1058580 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
| Msa0220740 | Msa1058580 | 0.813420 | 2.582863e-51 | -8.615850e-47 |
| Msa0223410 | Msa1058580 | -0.835223 | 1.901807e-56 | -8.615850e-47 |
| Msa0234440 | Msa1058580 | 0.816423 | 5.573437e-52 | -8.615850e-47 |
| Msa0365490 | Msa1058580 | 0.846928 | 1.595990e-59 | -8.615850e-47 |
| Msa0376590 | Msa1058580 | 0.807784 | 4.266941e-50 | -8.615850e-47 |
| Msa0381600 | Msa1058580 | -0.801408 | 9.134128e-49 | -8.615850e-47 |
| Msa0388030 | Msa1058580 | -0.807729 | 4.384859e-50 | -8.615850e-47 |
| Msa0397460 | Msa1058580 | 0.809417 | 1.912249e-50 | -8.615850e-47 |
| Msa0436370 | Msa1058580 | 0.827629 | 1.407391e-54 | -8.615850e-47 |
| Msa0439970 | Msa1058580 | 0.805421 | 1.345581e-49 | -8.615850e-47 |
| Msa0448550 | Msa1058580 | -0.823259 | 1.524999e-53 | -8.615850e-47 |
| Msa0452960 | Msa1058580 | 0.810030 | 1.411447e-50 | -8.615850e-47 |
| Msa0458440 | Msa1058580 | 0.856835 | 2.458466e-62 | -8.615850e-47 |
| Msa1012590 | Msa1058580 | -0.804523 | 2.073326e-49 | -8.615850e-47 |
| Msa1030970 | Msa1058580 | 0.804844 | 1.777551e-49 | -8.615850e-47 |
| Msa1037650 | Msa1058580 | -0.811442 | 6.988106e-51 | -8.615850e-47 |
| Msa1058580 | Msa1068200 | -0.809570 | 1.772532e-50 | -8.615850e-47 |
| Msa1058580 | Msa1075220 | -0.802270 | 6.074476e-49 | -8.615850e-47 |
| Msa1058580 | Msa1082500 | 0.827982 | 1.157930e-54 | -8.615850e-47 |
| Msa1058580 | Msa1113590 | 0.800081 | 1.703485e-48 | -8.615850e-47 |
| Msa1058580 | Msa1130270 | -0.803848 | 2.865324e-49 | -8.615850e-47 |
| Msa1058580 | Msa1156070 | 0.857801 | 1.274215e-62 | -8.615850e-47 |
| Msa1058580 | Msa1162550 | -0.800926 | 1.145733e-48 | -8.615850e-47 |
| Msa1058580 | Msa1185980 | 0.808566 | 2.907781e-50 | -8.615850e-47 |
| Msa1058580 | Msa1192990 | 0.818686 | 1.722331e-52 | -8.615850e-47 |
| Msa1058580 | Msa1205370 | 0.823361 | 1.443373e-53 | -8.615850e-47 |
| Msa1058580 | Msa1220150 | 0.809772 | 1.604379e-50 | -8.615850e-47 |
| Msa1058580 | Msa1224480 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
| Msa1058580 | Msa1239720 | 0.829400 | 5.257394e-55 | -8.615850e-47 |
| Msa1058580 | Msa1249920 | 0.808180 | 3.515961e-50 | -8.615850e-47 |
| Msa1058580 | Msa1267610 | 0.812621 | 3.867374e-51 | -8.615850e-47 |
| Msa1058580 | Msa1278840 | 0.819966 | 8.799754e-53 | -8.615850e-47 |
| Msa1058580 | Msa1291660 | 0.826141 | 3.192776e-54 | -8.615850e-47 |
| Msa1058580 | Msa1306850 | 0.804953 | 1.686685e-49 | -8.615850e-47 |
| Msa1058580 | Msa1307550 | 0.823144 | 1.622093e-53 | -8.615850e-47 |
| Msa1058580 | Msa1333680 | 0.808947 | 2.411325e-50 | -8.615850e-47 |
| Msa1058580 | Msa1333730 | 0.829535 | 4.875557e-55 | -8.615850e-47 |
| Msa1058580 | Msa1341570 | 0.822894 | 1.855508e-53 | -8.615850e-47 |
| Msa1058580 | Msa1372150 | 0.800713 | 1.266681e-48 | -8.615850e-47 |
| Msa1058580 | Msa1379850 | 0.829477 | 5.036230e-55 | -8.615850e-47 |
| Msa1058580 | Msa1390120 | 0.801624 | 8.245442e-49 | -8.615850e-47 |
| Msa1058580 | Msa1395530 | 0.801789 | 7.627993e-49 | -8.615850e-47 |
| Msa1058580 | Msa1404540 | 0.800997 | 1.108339e-48 | -8.615850e-47 |
| Msa1058580 | Msa1424680 | 0.832346 | 9.964911e-56 | -8.615850e-47 |
| Msa1058580 | Msa1433220 | 0.800792 | 1.220680e-48 | -8.615850e-47 |
| Msa1058580 | Msa1451620 | -0.809190 | 2.138946e-50 | -8.615850e-47 |
| Msa1058580 | Msa1453560 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa1058580 | Msa1457430 | 0.817084 | 3.961471e-52 | -8.615850e-47 |
| Msa0242430 | Msa1058580 | 0.806877 | 6.643610e-50 | -8.615850e-47 |
| Msa0243250 | Msa1058580 | 0.821294 | 4.357685e-53 | -8.615850e-47 |
| Msa0260810 | Msa1058580 | 0.800439 | 1.440499e-48 | -8.615850e-47 |
| Msa0264780 | Msa1058580 | 0.822389 | 2.431881e-53 | -8.615850e-47 |
| Msa0272730 | Msa1058580 | 0.819588 | 1.073500e-52 | -8.615850e-47 |
| Msa0276920 | Msa1058580 | 0.821474 | 3.962028e-53 | -8.615850e-47 |
| Msa0281640 | Msa1058580 | 0.807557 | 4.767945e-50 | -8.615850e-47 |
| Msa0284520 | Msa1058580 | 0.800507 | 1.395262e-48 | -8.615850e-47 |
| Msa0285450 | Msa1058580 | 0.806381 | 8.455961e-50 | -8.615850e-47 |
| Msa0299730 | Msa1058580 | 0.800405 | 1.463658e-48 | -8.615850e-47 |
| Msa0316800 | Msa1058580 | 0.809760 | 1.613280e-50 | -8.615850e-47 |
| Msa0317740 | Msa1058580 | 0.805831 | 1.104081e-49 | -8.615850e-47 |
| Msa0320800 | Msa1058580 | 0.812375 | 4.376185e-51 | -8.615850e-47 |
| Msa0333920 | Msa1058580 | 0.801961 | 7.031240e-49 | -8.615850e-47 |
| Msa0335040 | Msa1058580 | 0.829626 | 4.633315e-55 | -8.615850e-47 |
| Msa0350870 | Msa1058580 | 0.801756 | 7.749279e-49 | -8.615850e-47 |
| Msa0356890 | Msa1058580 | -0.816644 | 4.971371e-52 | -8.615850e-47 |
| Msa0357020 | Msa1058580 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
| Msa0484780 | Msa1058580 | 0.829992 | 3.773240e-55 | -8.615850e-47 |
| Msa0488270 | Msa1058580 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0503060 | Msa1058580 | 0.819046 | 1.426238e-52 | -8.615850e-47 |
| Msa0505060 | Msa1058580 | 0.810813 | 9.563044e-51 | -8.615850e-47 |
| Msa0530650 | Msa1058580 | 0.807559 | 4.763737e-50 | -8.615850e-47 |
| Msa0572480 | Msa1058580 | 0.831482 | 1.628005e-55 | -8.615850e-47 |
| Msa0579100 | Msa1058580 | 0.807293 | 5.425350e-50 | -8.615850e-47 |
| Msa0581050 | Msa1058580 | 0.818478 | 1.920080e-52 | -8.615850e-47 |
| Msa0587190 | Msa1058580 | 0.808413 | 3.135222e-50 | -8.615850e-47 |
| Msa0861130 | Msa1058580 | 0.800329 | 1.516850e-48 | -8.615850e-47 |
| Msa0870530 | Msa1058580 | 0.811635 | 6.344622e-51 | -8.615850e-47 |
| Msa0873860 | Msa1058580 | 0.801438 | 9.004816e-49 | -8.615850e-47 |
| Msa0907070 | Msa1058580 | 0.808776 | 2.623364e-50 | -8.615850e-47 |
| Msa0924310 | Msa1058580 | 0.818668 | 1.737935e-52 | -8.615850e-47 |
| Msa0925290 | Msa1058580 | 0.809380 | 1.947242e-50 | -8.615850e-47 |
| Msa0927290 | Msa1058580 | 0.806207 | 9.202227e-50 | -8.615850e-47 |
| Msa0936210 | Msa1058580 | 0.823654 | 1.233057e-53 | -8.615850e-47 |
| Msa0964130 | Msa1058580 | 0.807518 | 4.860586e-50 | -8.615850e-47 |
| Msa0969520 | Msa1058580 | 0.820819 | 5.606222e-53 | -8.615850e-47 |
| Msa0977180 | Msa1058580 | -0.806893 | 6.594908e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058580 | MtrunA17_Chr8g0382051 | 68.165 | 267 | 84 | 1 | 1 | 267 | 1 | 266 | 2.01e-127 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058580 | AT3G57360.1 | 45.977 | 261 | 124 | 7 | 1 | 260 | 1 | 245 | 5.54e-67 | 209 |
| Msa1058580 | AT3G02370.4 | 45.320 | 203 | 104 | 3 | 60 | 261 | 1 | 197 | 2.23e-54 | 175 |
| Msa1058580 | AT3G02370.2 | 45.320 | 203 | 104 | 3 | 60 | 261 | 1 | 197 | 2.23e-54 | 175 |
| Msa1058580 | AT3G02370.3 | 45.320 | 203 | 104 | 3 | 60 | 261 | 1 | 197 | 2.23e-54 | 175 |
| Msa1058580 | AT3G02370.1 | 48.485 | 165 | 79 | 2 | 60 | 223 | 1 | 160 | 1.81e-47 | 155 |
Find 76 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGATCAGAAGATTTA+AGG | 0.117924 | 7_2:-43562209 | None:intergenic |
| CATTCCATTGATAAGTTATT+TGG | 0.155844 | 7_2:+43562279 | Msa1058580:CDS |
| GAAGCTTTCTTGCACATAAT+TGG | 0.174578 | 7_2:-43563117 | None:intergenic |
| GACAAGCACATGAGAAAATT+TGG | 0.212952 | 7_2:-43562384 | None:intergenic |
| CAATTGTTCAATTACGATAT+TGG | 0.215158 | 7_2:+43563276 | Msa1058580:three_prime_UTR |
| ACAATCCTGTATTTGCATTC+TGG | 0.217227 | 7_2:+43563046 | Msa1058580:three_prime_UTR |
| GATTTGGCACAGGTATCTTA+TGG | 0.264509 | 7_2:+43561996 | Msa1058580:intron |
| GTTTAAACCTCAACTGTAAA+AGG | 0.266288 | 7_2:+43563148 | Msa1058580:three_prime_UTR |
| AAAGTTGATGGTCGGAAGTT+TGG | 0.269564 | 7_2:+43562084 | Msa1058580:CDS |
| CCTGGCCCAACTTGCAATTC+AGG | 0.275772 | 7_2:+43560895 | Msa1058580:CDS |
| CAATCCTGTATTTGCATTCT+GGG | 0.314898 | 7_2:+43563047 | Msa1058580:three_prime_UTR |
| TTCAAGATCAGAAGATTTAA+GGG | 0.330837 | 7_2:-43562208 | None:intergenic |
| CTTAAATCTTCTGATCTTGA+AGG | 0.344176 | 7_2:+43562210 | Msa1058580:CDS |
| GTAGCTCTTGAGAGAAAATA+TGG | 0.344246 | 7_2:+43562931 | Msa1058580:CDS |
| GAACTATGGAAGAAAAGGTT+TGG | 0.353007 | 7_2:+43560775 | Msa1058580:exon |
| ACCATTATCTAATAGATCTA+AGG | 0.353230 | 7_2:-43562028 | None:intergenic |
| GGAAGATAAACATCAAAATC+TGG | 0.353821 | 7_2:-43562327 | None:intergenic |
| AAGCAGACAATTAGTAGATA+TGG | 0.368214 | 7_2:+43562242 | Msa1058580:CDS |
| AACTATGGAAGAAAAGGTTT+GGG | 0.368802 | 7_2:+43560776 | Msa1058580:exon |
| GACTTTCTAAACCTCTTGTT+TGG | 0.373355 | 7_2:-43562348 | None:intergenic |
| AAGGTGGAAGCGGCCGTGTT+GGG | 0.393173 | 7_2:-43559692 | None:intergenic |
| TTTCTCTATCTCTTCTCTCC+TGG | 0.405905 | 7_2:+43559723 | Msa1058580:five_prime_UTR |
| GCCTTAGATCTATTAGATAA+TGG | 0.413209 | 7_2:+43562027 | Msa1058580:CDS |
| TTTGCGAGGTCACTGATAGA+AGG | 0.426366 | 7_2:+43562971 | Msa1058580:CDS |
| CTTTACCTGAATTGCAAGTT+GGG | 0.426982 | 7_2:-43560900 | None:intergenic |
| GCTACAATGTCTGCATTAGA+TGG | 0.433477 | 7_2:-43562913 | None:intergenic |
| GTCGGAAGTTTGGATGTTGT+TGG | 0.440117 | 7_2:+43562094 | Msa1058580:CDS |
| TTCGGCGGCATGGTGTTGCT+TGG | 0.440523 | 7_2:+43562163 | Msa1058580:CDS |
| CAAGGTGGAAGCGGCCGTGT+TGG | 0.443886 | 7_2:-43559693 | None:intergenic |
| CATTCTGGGATGACATGAAA+AGG | 0.444894 | 7_2:+43563061 | Msa1058580:three_prime_UTR |
| AGTCTCTTGGCTACATAGTT+CGG | 0.448906 | 7_2:+43562145 | Msa1058580:CDS |
| TGAAGCACACGTTGTGATCA+AGG | 0.453286 | 7_2:-43563174 | None:intergenic |
| CAAGATTTACACTTCAATTG+AGG | 0.454593 | 7_2:+43561740 | Msa1058580:CDS |
| GTCACCAAATAACTTATCAA+TGG | 0.481135 | 7_2:-43562283 | None:intergenic |
| CCTGAATTGCAAGTTGGGCC+AGG | 0.481566 | 7_2:-43560895 | None:intergenic |
| ACTTTACCTGAATTGCAAGT+TGG | 0.486911 | 7_2:-43560901 | None:intergenic |
| TCGGAAGTTTGGATGTTGTT+GGG | 0.490686 | 7_2:+43562095 | Msa1058580:CDS |
| TGCAAGTTGGGCCAGGAAGT+TGG | 0.490903 | 7_2:-43560888 | None:intergenic |
| TTGCAAAATGCAAGTGATGA+TGG | 0.492703 | 7_2:+43560846 | Msa1058580:CDS |
| ATAGATTGAACAACATATGT+AGG | 0.500909 | 7_2:-43563207 | None:intergenic |
| TCATCCCAGAATGCAAATAC+AGG | 0.506672 | 7_2:-43563051 | None:intergenic |
| GGCAGATGGAATGAAGAGAT+GGG | 0.508846 | 7_2:+43561654 | Msa1058580:CDS |
| AATTATGTGCAAGAAAGCTT+CGG | 0.515213 | 7_2:+43563119 | Msa1058580:three_prime_UTR |
| AAGCGACAGCAAGGTGGAAG+CGG | 0.516178 | 7_2:-43559702 | None:intergenic |
| CGGCCGTGTTGGGTCCTCTA+CGG | 0.518068 | 7_2:-43559682 | None:intergenic |
| GCAGAAGTGTATGAAAAGAA+AGG | 0.520348 | 7_2:+43561681 | Msa1058580:CDS |
| GGCTACATAGTTCGGCGGCA+TGG | 0.523179 | 7_2:+43562153 | Msa1058580:CDS |
| AGGCAGATGGAATGAAGAGA+TGG | 0.524534 | 7_2:+43561653 | Msa1058580:CDS |
| AGGTTTAGAAAGTCTTCTCC+TGG | 0.525155 | 7_2:+43562357 | Msa1058580:CDS |
| GTGGCGGTGCTGTTTACAAA+GGG | 0.532803 | 7_2:-43559601 | None:intergenic |
| TATAGGCACCTCAAGTCTCT+TGG | 0.537490 | 7_2:+43562132 | Msa1058580:CDS |
| CTACTAAAACGCCGCCGTAG+AGG | 0.538981 | 7_2:+43559668 | Msa1058580:five_prime_UTR |
| ATGTTTATCTTCCAAACAAG+AGG | 0.541371 | 7_2:+43562337 | Msa1058580:CDS |
| ATGAGAAAATTTGGAATACC+AGG | 0.550816 | 7_2:-43562375 | None:intergenic |
| TGCAAGAAAGCTTCGGATGG+TGG | 0.559741 | 7_2:+43563126 | Msa1058580:three_prime_UTR |
| ACACAAAATCGAAAGGCAGA+TGG | 0.564175 | 7_2:+43561640 | Msa1058580:CDS |
| ACAACTGGAATAGTTCGTAA+TGG | 0.568611 | 7_2:+43561717 | Msa1058580:CDS |
| ATGGAATGAAGAGATGGGAA+TGG | 0.574705 | 7_2:+43561659 | Msa1058580:CDS |
| AGATAGAGAAAGCGACAGCA+AGG | 0.582580 | 7_2:-43559711 | None:intergenic |
| GGTGGCGGTGCTGTTTACAA+AGG | 0.585258 | 7_2:-43559602 | None:intergenic |
| ATGTCTGCATTAGATGGAGG+AGG | 0.597256 | 7_2:-43562907 | None:intergenic |
| TAGATGTTCATCCTTGTCAA+AGG | 0.597660 | 7_2:-43563007 | None:intergenic |
| CATTCAATTGAAAATTTGCG+AGG | 0.600948 | 7_2:+43562957 | Msa1058580:CDS |
| TCCAGGAACACAAAATCGAA+AGG | 0.612133 | 7_2:+43561633 | Msa1058580:intron |
| CTCTTGGCTACATAGTTCGG+CGG | 0.631908 | 7_2:+43562148 | Msa1058580:CDS |
| TAAGTGAGAGAATGTGTTGG+TGG | 0.633588 | 7_2:-43559620 | None:intergenic |
| CCGCCGTAGAGGACCCAACA+CGG | 0.644737 | 7_2:+43559679 | Msa1058580:five_prime_UTR |
| CTATGTAGCCAAGAGACTTG+AGG | 0.654136 | 7_2:-43562140 | None:intergenic |
| ACAATGTCTGCATTAGATGG+AGG | 0.656582 | 7_2:-43562910 | None:intergenic |
| CCGTGTTGGGTCCTCTACGG+CGG | 0.657313 | 7_2:-43559679 | None:intergenic |
| ATATAAGTGAGAGAATGTGT+TGG | 0.665180 | 7_2:-43559623 | None:intergenic |
| GTGAGAGAATGTGTTGGTGG+CGG | 0.665331 | 7_2:-43559617 | None:intergenic |
| ATGTGCAAGAAAGCTTCGGA+TGG | 0.666807 | 7_2:+43563123 | Msa1058580:three_prime_UTR |
| TAGAGAAAGCGACAGCAAGG+TGG | 0.669933 | 7_2:-43559708 | None:intergenic |
| ATCAATGGAATGCTTGACTG+TGG | 0.707373 | 7_2:-43562268 | None:intergenic |
| GCTCTTGAGAGAAAATATGG+TGG | 0.725754 | 7_2:+43562934 | Msa1058580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTTTTTTTAATT+TGG | + | chr7_2:43561166-43561185 | Msa1058580:intron | 0.0% |
| !! | AACTATTAAGAAATATTTAA+AGG | + | chr7_2:43559975-43559994 | Msa1058580:intron | 10.0% |
| !!! | TTATTTTTTACTAAATTTAC+AGG | + | chr7_2:43561280-43561299 | Msa1058580:intron | 10.0% |
| !!! | TATTTTTTACTAAATTTACA+GGG | + | chr7_2:43561281-43561300 | Msa1058580:intron | 10.0% |
| !! | TCTTGTATTTAATAAAGTTA+AGG | + | chr7_2:43559881-43559900 | Msa1058580:intron | 15.0% |
| !! | AAAACTAACATTTATTATGA+GGG | - | chr7_2:43560314-43560333 | None:intergenic | 15.0% |
| !! | ATTCAACATTTATTTATGAT+TGG | + | chr7_2:43560520-43560539 | Msa1058580:intron | 15.0% |
| !!! | ATGGTTGATATTTTTTTTTT+AGG | + | chr7_2:43560935-43560954 | Msa1058580:intron | 15.0% |
| !!! | GAGTTAATTTTAAGTTTAAA+CGG | + | chr7_2:43561032-43561051 | Msa1058580:intron | 15.0% |
| !!! | TAAATAATTTAATTTAGTGC+TGG | + | chr7_2:43561345-43561364 | Msa1058580:intron | 15.0% |
| !! | AAGAAACAAATTATTTAGTT+AGG | + | chr7_2:43561867-43561886 | Msa1058580:intron | 15.0% |
| !!! | TTTTGGAAAATCTATTTAAT+CGG | + | chr7_2:43562857-43562876 | Msa1058580:intron | 15.0% |
| !! | AATTGAAACATAATAACAGT+GGG | + | chr7_2:43559938-43559957 | Msa1058580:intron | 20.0% |
| !! | TAATGAGTTAGATTTAAACT+TGG | + | chr7_2:43559999-43560018 | Msa1058580:intron | 20.0% |
| !! | TATATGAATTAAATTGTGTC+AGG | - | chr7_2:43560040-43560059 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr7_2:43560133-43560152 | None:intergenic | 20.0% |
| !! | CAAAACTAACATTTATTATG+AGG | - | chr7_2:43560315-43560334 | None:intergenic | 20.0% |
| !! | TGTCTCTTTATAATAGAATT+AGG | + | chr7_2:43560360-43560379 | Msa1058580:intron | 20.0% |
| !!! | AAATCATCTCTCTAAAAAAA+TGG | + | chr7_2:43560587-43560606 | Msa1058580:intron | 20.0% |
| !!! | AATCATCTCTCTAAAAAAAT+GGG | + | chr7_2:43560588-43560607 | Msa1058580:intron | 20.0% |
| !! | AATTGTTAACCAACAAAATA+GGG | - | chr7_2:43560687-43560706 | None:intergenic | 20.0% |
| !! | TAATTGTTAACCAACAAAAT+AGG | - | chr7_2:43560688-43560707 | None:intergenic | 20.0% |
| !!! | TATTTTGTTGGTTAACAATT+AGG | + | chr7_2:43560687-43560706 | Msa1058580:intron | 20.0% |
| !!! | ATTTTGTTGGTTAACAATTA+GGG | + | chr7_2:43560688-43560707 | Msa1058580:intron | 20.0% |
| !!! | TTTTTTTTTTAGGAGAACAA+TGG | + | chr7_2:43560945-43560964 | Msa1058580:intron | 20.0% |
| !!! | ATGATGTGTATTTTTTTGTA+TGG | + | chr7_2:43561233-43561252 | Msa1058580:intron | 20.0% |
| !!! | TTTTGTATGGATTTTTGTTT+AGG | + | chr7_2:43561246-43561265 | Msa1058580:intron | 20.0% |
| !! | AGTAAAAAATAATCATAGAG+AGG | - | chr7_2:43561272-43561291 | None:intergenic | 20.0% |
| !!! | AGAAGGTATATATAAAAAGA+TGG | - | chr7_2:43561790-43561809 | None:intergenic | 20.0% |
| !!! | ATTATTACGAATTCCTTTTT+CGG | - | chr7_2:43561927-43561946 | None:intergenic | 20.0% |
| !! | GAAATGTATAAAAAAGTTGA+TGG | + | chr7_2:43562072-43562091 | Msa1058580:CDS | 20.0% |
| !! | TCTTAATGAAAAGAAATGAA+AGG | - | chr7_2:43562668-43562687 | None:intergenic | 20.0% |
| !! | AGTAAAAAATGAAAGAATGT+TGG | - | chr7_2:43562826-43562845 | None:intergenic | 20.0% |
| ! | AAAGAAATAAAACCTAAACC+TGG | - | chr7_2:43559820-43559839 | None:intergenic | 25.0% |
| !!! | AGGTTTAGGTTTTATTTCTT+TGG | + | chr7_2:43559819-43559838 | Msa1058580:intron | 25.0% |
| ! | CAATTGAAACATAATAACAG+TGG | + | chr7_2:43559937-43559956 | Msa1058580:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr7_2:43560128-43560147 | None:intergenic | 25.0% |
| !!! | TAAGAAACAGTTGACTTTTT+TGG | - | chr7_2:43560227-43560246 | None:intergenic | 25.0% |
| !! | GTCAACTGTTTCTTATAATA+AGG | + | chr7_2:43560232-43560251 | Msa1058580:intron | 25.0% |
| !!! | GATTTTCTAAAATTCTTGTG+TGG | - | chr7_2:43560572-43560591 | None:intergenic | 25.0% |
| ! | GAGTTTAAACAAACAATGAA+AGG | - | chr7_2:43560660-43560679 | None:intergenic | 25.0% |
| !! | TCAATGGATTTATGAAAAGT+TGG | - | chr7_2:43560729-43560748 | None:intergenic | 25.0% |
| !! | GCTGTAATTTGAAATATCAA+TGG | - | chr7_2:43560745-43560764 | None:intergenic | 25.0% |
| !! | ATTTTGAACTATGGAAGAAA+AGG | + | chr7_2:43560770-43560789 | Msa1058580:exon | 25.0% |
| ! | TTAAATAAGCCAATCCATAT+AGG | + | chr7_2:43561527-43561546 | Msa1058580:intron | 25.0% |
| ! | ATGAAAAGAAAGGAAAAATG+TGG | + | chr7_2:43561691-43561710 | Msa1058580:CDS | 25.0% |
| ! | TGAAAAGAAAGGAAAAATGT+GGG | + | chr7_2:43561692-43561711 | Msa1058580:CDS | 25.0% |
| !! | CGTAATAATACATTTTTGCT+AGG | + | chr7_2:43561938-43561957 | Msa1058580:intron | 25.0% |
| !!! | TAGGATAAAGTTTTGAAAAC+TGG | + | chr7_2:43561957-43561976 | Msa1058580:intron | 25.0% |
| !!! | TGCATATGTGAATTTTGATT+TGG | + | chr7_2:43561980-43561999 | Msa1058580:intron | 25.0% |
| ! | ACCATTATCTAATAGATCTA+AGG | - | chr7_2:43562031-43562050 | None:intergenic | 25.0% |
| !!! | TGTATAAAAAAGTTGATGGT+CGG | + | chr7_2:43562076-43562095 | Msa1058580:CDS | 25.0% |
| ! | TTCAAGATCAGAAGATTTAA+GGG | - | chr7_2:43562211-43562230 | None:intergenic | 25.0% |
| ! | CATTCCATTGATAAGTTATT+TGG | + | chr7_2:43562279-43562298 | Msa1058580:CDS | 25.0% |
| ! | CACATAAATTACCATAGAAA+TGG | - | chr7_2:43562601-43562620 | None:intergenic | 25.0% |
| ! | AAATGCCTAATAATTACTCA+AGG | - | chr7_2:43562635-43562654 | None:intergenic | 25.0% |
| !! | TGAGTAATTATTAGGCATTT+TGG | + | chr7_2:43562635-43562654 | Msa1058580:intron | 25.0% |
| !!! | TTTACTCCTTTATCTTGTTT+TGG | + | chr7_2:43562840-43562859 | Msa1058580:intron | 25.0% |
| !! | GATTTTCCAAAACAAGATAA+AGG | - | chr7_2:43562849-43562868 | None:intergenic | 25.0% |
| ! | ATAGATTGAACAACATATGT+AGG | - | chr7_2:43563210-43563229 | None:intergenic | 25.0% |
| ! | CAATTGTTCAATTACGATAT+TGG | + | chr7_2:43563276-43563295 | Msa1058580:three_prime_UTR | 25.0% |
| ATATAAGTGAGAGAATGTGT+TGG | - | chr7_2:43559626-43559645 | None:intergenic | 30.0% | |
| !!! | AGTTGACTTTTTTGGTTCAT+AGG | - | chr7_2:43560219-43560238 | None:intergenic | 30.0% |
| ! | CTGTTTCTTATAATAAGGAC+CGG | + | chr7_2:43560237-43560256 | Msa1058580:intron | 30.0% |
| TAACATTTATTATGAGGGCT+CGG | - | chr7_2:43560309-43560328 | None:intergenic | 30.0% | |
| ACTACTTAGAGAAAAAGAGT+TGG | + | chr7_2:43560400-43560419 | Msa1058580:intron | 30.0% | |
| TTGGTTAACAATTAGGGAAA+AGG | + | chr7_2:43560694-43560713 | Msa1058580:intron | 30.0% | |
| TGGTTAACAATTAGGGAAAA+GGG | + | chr7_2:43560695-43560714 | Msa1058580:intron | 30.0% | |
| !!! | CAGCTTTTGATTTTGAACTA+TGG | + | chr7_2:43560761-43560780 | Msa1058580:intron | 30.0% |
| AACTATGGAAGAAAAGGTTT+GGG | + | chr7_2:43560776-43560795 | Msa1058580:exon | 30.0% | |
| !! | TATTGATGATGATGATGATG+AGG | + | chr7_2:43560818-43560837 | Msa1058580:CDS | 30.0% |
| GGTAAAGTATGTTTGAACAA+TGG | + | chr7_2:43560916-43560935 | Msa1058580:intron | 30.0% | |
| TACTAAATTTACAGGGACTT+AGG | + | chr7_2:43561288-43561307 | Msa1058580:intron | 30.0% | |
| ACTAAATTTACAGGGACTTA+GGG | + | chr7_2:43561289-43561308 | Msa1058580:intron | 30.0% | |
| CTTATTTCCATAAACTCTCT+AGG | - | chr7_2:43561429-43561448 | None:intergenic | 30.0% | |
| ! | CAGAGATATTTTCAGTACTA+AGG | - | chr7_2:43561553-43561572 | None:intergenic | 30.0% |
| !!! | TTTTTTGCATTTCATCTTCC+AGG | + | chr7_2:43561616-43561635 | Msa1058580:intron | 30.0% |
| CAAGATTTACACTTCAATTG+AGG | + | chr7_2:43561740-43561759 | Msa1058580:CDS | 30.0% | |
| TGGTAAAATTTCACAACAGA+AGG | - | chr7_2:43561807-43561826 | None:intergenic | 30.0% | |
| ! | TGTTGTGAAATTTTACCAGT+AGG | + | chr7_2:43561809-43561828 | Msa1058580:intron | 30.0% |
| ! | GTTGTGAAATTTTACCAGTA+GGG | + | chr7_2:43561810-43561829 | Msa1058580:intron | 30.0% |
| GCCTTAGATCTATTAGATAA+TGG | + | chr7_2:43562027-43562046 | Msa1058580:CDS | 30.0% | |
| CTTCAAGATCAGAAGATTTA+AGG | - | chr7_2:43562212-43562231 | None:intergenic | 30.0% | |
| CTTAAATCTTCTGATCTTGA+AGG | + | chr7_2:43562210-43562229 | Msa1058580:CDS | 30.0% | |
| AAGCAGACAATTAGTAGATA+TGG | + | chr7_2:43562242-43562261 | Msa1058580:CDS | 30.0% | |
| GTCACCAAATAACTTATCAA+TGG | - | chr7_2:43562286-43562305 | None:intergenic | 30.0% | |
| GGAAGATAAACATCAAAATC+TGG | - | chr7_2:43562330-43562349 | None:intergenic | 30.0% | |
| ATGTTTATCTTCCAAACAAG+AGG | + | chr7_2:43562337-43562356 | Msa1058580:CDS | 30.0% | |
| ! | ATGAGAAAATTTGGAATACC+AGG | - | chr7_2:43562378-43562397 | None:intergenic | 30.0% |
| TAAATTGTAATTTCGTAGCG+TGG | - | chr7_2:43562545-43562564 | None:intergenic | 30.0% | |
| ! | AGATACAATTGCCATTTCTA+TGG | + | chr7_2:43562587-43562606 | Msa1058580:intron | 30.0% |
| GACTTCCTTGAGTAATTATT+AGG | + | chr7_2:43562627-43562646 | Msa1058580:intron | 30.0% | |
| ! | TTTTCATTAAGAGTGATGTG+TGG | + | chr7_2:43562676-43562695 | Msa1058580:intron | 30.0% |
| CATTGCATTTGTAATCTGTT+AGG | + | chr7_2:43562881-43562900 | Msa1058580:intron | 30.0% | |
| CATTCAATTGAAAATTTGCG+AGG | + | chr7_2:43562957-43562976 | Msa1058580:CDS | 30.0% | |
| ! | AAGTTTCTTTTCCTTTGACA+AGG | + | chr7_2:43562996-43563015 | Msa1058580:CDS | 30.0% |
| GGATTGTTACCAAAAATTCA+GGG | - | chr7_2:43563033-43563052 | None:intergenic | 30.0% | |
| AGGATTGTTACCAAAAATTC+AGG | - | chr7_2:43563034-43563053 | None:intergenic | 30.0% | |
| AATTATGTGCAAGAAAGCTT+CGG | + | chr7_2:43563119-43563138 | Msa1058580:three_prime_UTR | 30.0% | |
| GTTTAAACCTCAACTGTAAA+AGG | + | chr7_2:43563148-43563167 | Msa1058580:three_prime_UTR | 30.0% | |
| !!! | AGTAGTTTTTTGTGGAAGCT+TGG | - | chr7_2:43559653-43559672 | None:intergenic | 35.0% |
| !! | GGCGTTTTAGTAGTTTTTTG+TGG | - | chr7_2:43559661-43559680 | None:intergenic | 35.0% |
| ! | TCTTTGGAAGCTTTCAGAAT+AGG | + | chr7_2:43559835-43559854 | Msa1058580:intron | 35.0% |
| TGTTTCAATTGAACAACAGC+AGG | - | chr7_2:43559928-43559947 | None:intergenic | 35.0% | |
| ATATAACTGACCCTATTGAG+TGG | + | chr7_2:43560055-43560074 | Msa1058580:intron | 35.0% | |
| TATAACTGACCCTATTGAGT+GGG | + | chr7_2:43560056-43560075 | Msa1058580:intron | 35.0% | |
| ! | AAGTCTTATCCCACTCAATA+GGG | - | chr7_2:43560068-43560087 | None:intergenic | 35.0% |
| ! | AAAGTCTTATCCCACTCAAT+AGG | - | chr7_2:43560069-43560088 | None:intergenic | 35.0% |
| TTCTTATAATAAGGACCGGA+GGG | - | chr7_2:43560241-43560260 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7_2:43560240-43560259 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7_2:43560240-43560259 | Msa1058580:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7_2:43560241-43560260 | Msa1058580:intron | 35.0% | |
| AACATTTATTATGAGGGCTC+GGG | - | chr7_2:43560308-43560327 | None:intergenic | 35.0% | |
| ACTTAGAGAAAAAGAGTTGG+AGG | + | chr7_2:43560403-43560422 | Msa1058580:intron | 35.0% | |
| TTCTTGTGTGGTTTCACTAT+AGG | - | chr7_2:43560560-43560579 | None:intergenic | 35.0% | |
| ACAAACAATGAAAGGAAGTG+AGG | - | chr7_2:43560652-43560671 | None:intergenic | 35.0% | |
| ! | AACTCTGAACCCTATTTTGT+TGG | + | chr7_2:43560675-43560694 | Msa1058580:intron | 35.0% |
| GAACTATGGAAGAAAAGGTT+TGG | + | chr7_2:43560775-43560794 | Msa1058580:exon | 35.0% | |
| TTGCAAAATGCAAGTGATGA+TGG | + | chr7_2:43560846-43560865 | Msa1058580:CDS | 35.0% | |
| CTTTACCTGAATTGCAAGTT+GGG | - | chr7_2:43560903-43560922 | None:intergenic | 35.0% | |
| ACTTTACCTGAATTGCAAGT+TGG | - | chr7_2:43560904-43560923 | None:intergenic | 35.0% | |
| ! | CACACAACTATAAGTTGAGA+AGG | + | chr7_2:43561002-43561021 | Msa1058580:intron | 35.0% |
| !! | TGGAATCTTTAAAGAGTGTC+TGG | + | chr7_2:43561186-43561205 | Msa1058580:intron | 35.0% |
| !! | GGAATCTTTAAAGAGTGTCT+GGG | + | chr7_2:43561187-43561206 | Msa1058580:intron | 35.0% |
| !! | GAATCTTTAAAGAGTGTCTG+GGG | + | chr7_2:43561188-43561207 | Msa1058580:intron | 35.0% |
| CAAACATGCCTAAGTAACTA+AGG | - | chr7_2:43561323-43561342 | None:intergenic | 35.0% | |
| CTTAGTTACTTAGGCATGTT+TGG | + | chr7_2:43561321-43561340 | Msa1058580:intron | 35.0% | |
| AACCTATCCTAGAGAGTTTA+TGG | + | chr7_2:43561419-43561438 | Msa1058580:intron | 35.0% | |
| !! | TTCCATAAACTCTCTAGGAT+AGG | - | chr7_2:43561424-43561443 | None:intergenic | 35.0% |
| AGACTGTTTGAAAGAGCTTA+AGG | - | chr7_2:43561480-43561499 | None:intergenic | 35.0% | |
| TTTCAGTACTAAGGCCTATA+TGG | - | chr7_2:43561544-43561563 | None:intergenic | 35.0% | |
| ! | GCAGAAGTGTATGAAAAGAA+AGG | + | chr7_2:43561681-43561700 | Msa1058580:CDS | 35.0% |
| ACAACTGGAATAGTTCGTAA+TGG | + | chr7_2:43561717-43561736 | Msa1058580:CDS | 35.0% | |
| GATGCAAAATTAGCCGAAAA+AGG | + | chr7_2:43561911-43561930 | Msa1058580:intron | 35.0% | |
| !!! | TGTGAATTTTGATTTGGCAC+AGG | + | chr7_2:43561986-43562005 | Msa1058580:intron | 35.0% |
| GACTTTCTAAACCTCTTGTT+TGG | - | chr7_2:43562351-43562370 | None:intergenic | 35.0% | |
| GACAAGCACATGAGAAAATT+TGG | - | chr7_2:43562387-43562406 | None:intergenic | 35.0% | |
| ! | ATTTTCTCATGTGCTTGTCT+AGG | + | chr7_2:43562388-43562407 | Msa1058580:CDS | 35.0% |
| ! | ATGTGTGGAGTCTATCTTTT+TGG | + | chr7_2:43562691-43562710 | Msa1058580:intron | 35.0% |
| ! | TCTATCTTTTTGGACCACTT+TGG | + | chr7_2:43562701-43562720 | Msa1058580:intron | 35.0% |
| ATGAAAGAATGTTGGAGCTA+CGG | - | chr7_2:43562818-43562837 | None:intergenic | 35.0% | |
| GTAGCTCTTGAGAGAAAATA+TGG | + | chr7_2:43562931-43562950 | Msa1058580:CDS | 35.0% | |
| TAGATGTTCATCCTTGTCAA+AGG | - | chr7_2:43563010-43563029 | None:intergenic | 35.0% | |
| ! | GAACATCTACCCTGAATTTT+TGG | + | chr7_2:43563021-43563040 | Msa1058580:exon | 35.0% |
| ACAATCCTGTATTTGCATTC+TGG | + | chr7_2:43563046-43563065 | Msa1058580:three_prime_UTR | 35.0% | |
| CAATCCTGTATTTGCATTCT+GGG | + | chr7_2:43563047-43563066 | Msa1058580:three_prime_UTR | 35.0% | |
| GAAGCTTTCTTGCACATAAT+TGG | - | chr7_2:43563120-43563139 | None:intergenic | 35.0% | |
| ! | AAGGATTCCTTTTACAGTTG+AGG | - | chr7_2:43563158-43563177 | None:intergenic | 35.0% |
| TAAGTGAGAGAATGTGTTGG+TGG | - | chr7_2:43559623-43559642 | None:intergenic | 40.0% | |
| TTTCTCTATCTCTTCTCTCC+TGG | + | chr7_2:43559723-43559742 | Msa1058580:five_prime_UTR | 40.0% | |
| GGTTACAAAGAGAACTAACC+AGG | - | chr7_2:43559744-43559763 | None:intergenic | 40.0% | |
| GTACAAGAGAGCGAAAAGAA+GGG | - | chr7_2:43559765-43559784 | None:intergenic | 40.0% | |
| TGGTTGAAGACTCCTTCTTA+GGG | - | chr7_2:43559800-43559819 | None:intergenic | 40.0% | |
| TGTTTGTTTGATACTCCCTC+CGG | + | chr7_2:43560106-43560125 | Msa1058580:intron | 40.0% | |
| CTTGAGTATAATACTCCCTC+CGG | - | chr7_2:43560259-43560278 | None:intergenic | 40.0% | |
| GAGAAAAAGAGTTGGAGGTT+TGG | + | chr7_2:43560408-43560427 | Msa1058580:intron | 40.0% | |
| ! | TTGGAGGTTTGGTTGAAACT+TGG | + | chr7_2:43560419-43560438 | Msa1058580:intron | 40.0% |
| CGGAAATTTCAGAAACGTGA+GGG | - | chr7_2:43560621-43560640 | None:intergenic | 40.0% | |
| TCGGAAATTTCAGAAACGTG+AGG | - | chr7_2:43560622-43560641 | None:intergenic | 40.0% | |
| AATGAAAGGAAGTGAGGAAC+GGG | - | chr7_2:43560646-43560665 | None:intergenic | 40.0% | |
| CAATGAAAGGAAGTGAGGAA+CGG | - | chr7_2:43560647-43560666 | None:intergenic | 40.0% | |
| ! | TTGACTTTTCACCAACTTCC+TGG | + | chr7_2:43560877-43560896 | Msa1058580:CDS | 40.0% |
| GAAATGCTAACGAGTACTCT+TGG | + | chr7_2:43561058-43561077 | Msa1058580:intron | 40.0% | |
| TCACCATGCCTTAGTTACTT+AGG | + | chr7_2:43561312-43561331 | Msa1058580:intron | 40.0% | |
| ATGCCTAAGTAACTAAGGCA+TGG | - | chr7_2:43561318-43561337 | None:intergenic | 40.0% | |
| GTACTAAGGCCTATATGGAT+TGG | - | chr7_2:43561539-43561558 | None:intergenic | 40.0% | |
| CAATGCTAAAGTGAAGCGAA+GGG | - | chr7_2:43561579-43561598 | None:intergenic | 40.0% | |
| ACAATGCTAAAGTGAAGCGA+AGG | - | chr7_2:43561580-43561599 | None:intergenic | 40.0% | |
| TCCAGGAACACAAAATCGAA+AGG | + | chr7_2:43561633-43561652 | Msa1058580:intron | 40.0% | |
| ACACAAAATCGAAAGGCAGA+TGG | + | chr7_2:43561640-43561659 | Msa1058580:CDS | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | + | chr7_2:43561659-43561678 | Msa1058580:CDS | 40.0% | |
| GGAAAAATGTGGGTAACAAC+TGG | + | chr7_2:43561702-43561721 | Msa1058580:CDS | 40.0% | |
| ! | GTACTGTGAATTTTCCCTAC+TGG | - | chr7_2:43561827-43561846 | None:intergenic | 40.0% |
| GATTTGGCACAGGTATCTTA+TGG | + | chr7_2:43561996-43562015 | Msa1058580:intron | 40.0% | |
| !! | AAAGTTGATGGTCGGAAGTT+TGG | + | chr7_2:43562084-43562103 | Msa1058580:CDS | 40.0% |
| TCGGAAGTTTGGATGTTGTT+GGG | + | chr7_2:43562095-43562114 | Msa1058580:CDS | 40.0% | |
| ! | ATGTTGTTGGGAGCTTTTTG+AGG | + | chr7_2:43562107-43562126 | Msa1058580:CDS | 40.0% |
| AGTCTCTTGGCTACATAGTT+CGG | + | chr7_2:43562145-43562164 | Msa1058580:CDS | 40.0% | |
| ATCAATGGAATGCTTGACTG+TGG | - | chr7_2:43562271-43562290 | None:intergenic | 40.0% | |
| AGGTTTAGAAAGTCTTCTCC+TGG | + | chr7_2:43562357-43562376 | Msa1058580:CDS | 40.0% | |
| TGCACATAATGTGTCCAAAG+TGG | - | chr7_2:43562718-43562737 | None:intergenic | 40.0% | |
| AAACGACTGAAAAATCAGCG+TGG | - | chr7_2:43562770-43562789 | None:intergenic | 40.0% | |
| ACAATGTCTGCATTAGATGG+AGG | - | chr7_2:43562913-43562932 | None:intergenic | 40.0% | |
| GCTACAATGTCTGCATTAGA+TGG | - | chr7_2:43562916-43562935 | None:intergenic | 40.0% | |
| GCTCTTGAGAGAAAATATGG+TGG | + | chr7_2:43562934-43562953 | Msa1058580:CDS | 40.0% | |
| TCATCCCAGAATGCAAATAC+AGG | - | chr7_2:43563054-43563073 | None:intergenic | 40.0% | |
| !! | CATTCTGGGATGACATGAAA+AGG | + | chr7_2:43563061-43563080 | Msa1058580:three_prime_UTR | 40.0% |
| AGATAGAGAAAGCGACAGCA+AGG | - | chr7_2:43559714-43559733 | None:intergenic | 45.0% | |
| CGTACAAGAGAGCGAAAAGA+AGG | - | chr7_2:43559766-43559785 | None:intergenic | 45.0% | |
| GTTCAACACGAACCCTAAGA+AGG | + | chr7_2:43559785-43559804 | Msa1058580:intron | 45.0% | |
| CTGGTTGAAGACTCCTTCTT+AGG | - | chr7_2:43559801-43559820 | None:intergenic | 45.0% | |
| CTAAGAAGGAGTCTTCAACC+AGG | + | chr7_2:43559799-43559818 | Msa1058580:intron | 45.0% | |
| AGGAGTCTTCAACCAGGTTT+AGG | + | chr7_2:43559805-43559824 | Msa1058580:intron | 45.0% | |
| !! | CGGAGGGAGTATTATACTCA+AGG | + | chr7_2:43560257-43560276 | Msa1058580:intron | 45.0% |
| ! | GCCTTTCGATTTTGTGTTCC+TGG | - | chr7_2:43561637-43561656 | None:intergenic | 45.0% |
| AGGCAGATGGAATGAAGAGA+TGG | + | chr7_2:43561653-43561672 | Msa1058580:CDS | 45.0% | |
| GGCAGATGGAATGAAGAGAT+GGG | + | chr7_2:43561654-43561673 | Msa1058580:CDS | 45.0% | |
| GTCGGAAGTTTGGATGTTGT+TGG | + | chr7_2:43562094-43562113 | Msa1058580:CDS | 45.0% | |
| !!! | GGGAGCTTTTTGAGGCTTAT+AGG | + | chr7_2:43562115-43562134 | Msa1058580:CDS | 45.0% |
| TATAGGCACCTCAAGTCTCT+TGG | + | chr7_2:43562132-43562151 | Msa1058580:CDS | 45.0% | |
| CTATGTAGCCAAGAGACTTG+AGG | - | chr7_2:43562143-43562162 | None:intergenic | 45.0% | |
| ATGTCTGCATTAGATGGAGG+AGG | - | chr7_2:43562910-43562929 | None:intergenic | 45.0% | |
| TTTGCGAGGTCACTGATAGA+AGG | + | chr7_2:43562971-43562990 | Msa1058580:CDS | 45.0% | |
| ATGTGCAAGAAAGCTTCGGA+TGG | + | chr7_2:43563123-43563142 | Msa1058580:three_prime_UTR | 45.0% | |
| TGAAGCACACGTTGTGATCA+AGG | - | chr7_2:43563177-43563196 | None:intergenic | 45.0% | |
| !! | ATTAAAACTTATATTATTTA+AGG | - | chr7_2:43561099-43561118 | None:intergenic | 5.0% |
| ! | GTGAGAGAATGTGTTGGTGG+CGG | - | chr7_2:43559620-43559639 | None:intergenic | 50.0% |
| TAGAGAAAGCGACAGCAAGG+TGG | - | chr7_2:43559711-43559730 | None:intergenic | 50.0% | |
| ! | AAGGAAGTGAGGAACGGGTT+CGG | - | chr7_2:43560641-43560660 | None:intergenic | 50.0% |
| TGCTAAAGTGAAGCGAAGGG+AGG | - | chr7_2:43561576-43561595 | None:intergenic | 50.0% | |
| CTCTTGGCTACATAGTTCGG+CGG | + | chr7_2:43562148-43562167 | Msa1058580:CDS | 50.0% | |
| TGCAAGAAAGCTTCGGATGG+TGG | + | chr7_2:43563126-43563145 | Msa1058580:three_prime_UTR | 50.0% | |
| CTACTAAAACGCCGCCGTAG+AGG | + | chr7_2:43559668-43559687 | Msa1058580:five_prime_UTR | 55.0% | |
| AAGCGACAGCAAGGTGGAAG+CGG | - | chr7_2:43559705-43559724 | None:intergenic | 55.0% | |
| ! | TGCAAGTTGGGCCAGGAAGT+TGG | - | chr7_2:43560891-43560910 | None:intergenic | 55.0% |
| ! | CCTGAATTGCAAGTTGGGCC+AGG | - | chr7_2:43560898-43560917 | None:intergenic | 55.0% |
| CCTGGCCCAACTTGCAATTC+AGG | + | chr7_2:43560895-43560914 | Msa1058580:CDS | 55.0% | |
| AAGGTGGAAGCGGCCGTGTT+GGG | - | chr7_2:43559695-43559714 | None:intergenic | 60.0% | |
| GGCTACATAGTTCGGCGGCA+TGG | + | chr7_2:43562153-43562172 | Msa1058580:CDS | 60.0% | |
| !! | TTCGGCGGCATGGTGTTGCT+TGG | + | chr7_2:43562163-43562182 | Msa1058580:CDS | 60.0% |
| CCGTGTTGGGTCCTCTACGG+CGG | - | chr7_2:43559682-43559701 | None:intergenic | 65.0% | |
| CCGCCGTAGAGGACCCAACA+CGG | + | chr7_2:43559679-43559698 | Msa1058580:five_prime_UTR | 65.0% | |
| CGGCCGTGTTGGGTCCTCTA+CGG | - | chr7_2:43559685-43559704 | None:intergenic | 65.0% | |
| CAAGGTGGAAGCGGCCGTGT+TGG | - | chr7_2:43559696-43559715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 43559604 | 43563377 | 43559604 | ID=Msa1058580;Name=Msa1058580 |
| chr7_2 | mRNA | 43559604 | 43563377 | 43559604 | ID=Msa1058580-mRNA-1;Parent=Msa1058580;Name=Msa1058580-mRNA-1;_AED=0.25;_eAED=0.25;_QI=157|1|1|1|0.75|0.6|5|342|267 |
| chr7_2 | exon | 43559604 | 43559744 | 43559604 | ID=Msa1058580-mRNA-1:exon:7794;Parent=Msa1058580-mRNA-1 |
| chr7_2 | exon | 43560764 | 43560916 | 43560764 | ID=Msa1058580-mRNA-1:exon:7795;Parent=Msa1058580-mRNA-1 |
| chr7_2 | exon | 43561638 | 43561769 | 43561638 | ID=Msa1058580-mRNA-1:exon:7796;Parent=Msa1058580-mRNA-1 |
| chr7_2 | exon | 43562008 | 43562409 | 43562008 | ID=Msa1058580-mRNA-1:exon:7797;Parent=Msa1058580-mRNA-1 |
| chr7_2 | exon | 43562903 | 43563377 | 43562903 | ID=Msa1058580-mRNA-1:exon:7798;Parent=Msa1058580-mRNA-1 |
| chr7_2 | five_prime_UTR | 43559604 | 43559744 | 43559604 | ID=Msa1058580-mRNA-1:five_prime_utr;Parent=Msa1058580-mRNA-1 |
| chr7_2 | five_prime_UTR | 43560764 | 43560779 | 43560764 | ID=Msa1058580-mRNA-1:five_prime_utr;Parent=Msa1058580-mRNA-1 |
| chr7_2 | CDS | 43560780 | 43560916 | 43560780 | ID=Msa1058580-mRNA-1:cds;Parent=Msa1058580-mRNA-1 |
| chr7_2 | CDS | 43561638 | 43561769 | 43561638 | ID=Msa1058580-mRNA-1:cds;Parent=Msa1058580-mRNA-1 |
| chr7_2 | CDS | 43562008 | 43562409 | 43562008 | ID=Msa1058580-mRNA-1:cds;Parent=Msa1058580-mRNA-1 |
| chr7_2 | CDS | 43562903 | 43563035 | 43562903 | ID=Msa1058580-mRNA-1:cds;Parent=Msa1058580-mRNA-1 |
| chr7_2 | three_prime_UTR | 43563036 | 43563377 | 43563036 | ID=Msa1058580-mRNA-1:three_prime_utr;Parent=Msa1058580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
