AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367200 MtrunA17_Chr3g0108331 90.493 568 14 1 1 528 1 568 0.0 1048
Msa0367200 MtrunA17_Chr5g0432861 67.414 580 129 8 4 528 5 579 0.0 777
Msa0367200 MtrunA17_Chr5g0401451 38.235 612 280 9 8 526 24 630 1.12e-135 407
Msa0367200 MtrunA17_Chr4g0053841 37.333 600 288 10 12 528 1 595 8.23e-127 383
Msa0367200 MtrunA17_Chr4g0010091 36.475 573 277 11 8 499 16 582 1.16e-117 360
Msa0367200 MtrunA17_Chr1g0195911 34.967 612 298 16 7 528 20 621 1.14e-110 342
Msa0367200 MtrunA17_Chr7g0245201 34.247 584 303 10 23 528 60 640 1.05e-104 327
Msa0367200 MtrunA17_Chr7g0268781 33.443 610 301 16 7 523 20 617 6.61e-104 325
Msa0367200 MtrunA17_Chr2g0303541 33.846 585 287 13 11 497 12 594 1.95e-98 311
Msa0367200 MtrunA17_Chr8g0374011 32.970 643 294 15 16 523 11 651 5.02e-97 308
Msa0367200 MtrunA17_Chr2g0285511 32.675 557 261 10 11 460 12 561 3.70e-94 299
Msa0367200 MtrunA17_Chr1g0181181 34.409 465 244 8 18 423 20 482 1.99e-87 280
Msa0367200 MtrunA17_Chr2g0320691 31.083 563 292 12 3 470 2 563 6.76e-80 262
Msa0367200 MtrunA17_Chr8g0382231 31.021 519 273 8 24 468 52 559 1.64e-79 261
Msa0367200 MtrunA17_Chr5g0401341 33.909 463 236 8 23 420 26 483 7.91e-77 254
Msa0367200 MtrunA17_Chr1g0207461 31.224 474 252 8 21 425 25 493 3.83e-76 252
Msa0367200 MtrunA17_Chr1g0150191 32.285 477 254 7 11 419 12 487 8.44e-76 251
Msa0367200 MtrunA17_Chr4g0076521 30.635 457 258 4 20 420 22 475 4.66e-74 246
Msa0367200 MtrunA17_Chr5g0412591 33.538 489 234 8 19 429 21 496 3.77e-73 243
Msa0367200 MtrunA17_Chr1g0199631 32.244 459 229 8 42 423 8 461 6.67e-72 239
Msa0367200 MtrunA17_Chr1g0191711 29.320 515 299 9 1 470 34 528 4.93e-70 234
Msa0367200 MtrunA17_Chr8g0367891 33.264 478 255 8 27 442 29 504 1.68e-67 228
Msa0367200 MtrunA17_Chr2g0290741 28.855 454 254 6 23 420 25 465 7.51e-64 218
Msa0367200 MtrunA17_Chr4g0050021 37.736 212 105 2 13 197 33 244 2.09e-43 163
Msa0367200 MtrunA17_Chr4g0050021 32.288 319 185 7 210 501 326 640 4.85e-39 151
Msa0367200 MtrunA17_Chr2g0279481 37.500 216 105 2 12 197 32 247 4.68e-43 162
Msa0367200 MtrunA17_Chr2g0279481 31.875 320 188 4 209 501 330 646 1.75e-40 155
Msa0367200 MtrunA17_Chr2g0332281 37.615 218 127 1 209 426 91 299 8.77e-43 157
Msa0367200 MtrunA17_Chr4g0003891 31.715 309 159 4 156 421 15 314 1.03e-42 158
Msa0367200 MtrunA17_Chr4g0037661 25.612 531 285 14 33 467 13 529 4.96e-40 152
Msa0367200 MtrunA17_Chr1g0206621 44.079 152 79 3 28 177 72 219 3.87e-37 137
Msa0367200 MtrunA17_Chr4g0023801 25.692 506 293 14 33 468 14 506 3.93e-36 141
Msa0367200 MtrunA17_Chr1g0163311 26.577 523 272 17 34 469 14 511 5.59e-36 140
Msa0367200 MtrunA17_Chr2g0280541 26.133 375 200 12 91 406 2 358 1.72e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367200 AT2G30520.1 63.014 584 157 7 4 528 10 593 0.0 721
Msa0367200 AT2G30520.2 62.569 545 145 7 43 528 1 545 0.0 658
Msa0367200 AT2G30520.3 62.569 545 145 7 43 528 1 545 0.0 658
Msa0367200 AT5G67385.1 36.678 608 298 12 2 528 3 604 3.72e-121 369
Msa0367200 AT5G48800.1 37.234 564 277 11 7 499 22 579 5.91e-118 361
Msa0367200 AT1G03010.1 33.446 592 284 13 7 499 20 600 2.02e-105 329
Msa0367200 AT1G03010.2 33.681 576 273 12 23 499 8 573 4.43e-104 325
Msa0367200 AT1G03010.3 33.681 576 273 12 23 499 34 599 1.47e-103 324
Msa0367200 AT5G67385.4 35.044 565 280 12 45 528 1 559 7.12e-103 320
Msa0367200 AT5G67385.5 35.044 565 280 12 45 528 1 559 7.12e-103 320
Msa0367200 AT5G67385.2 35.044 565 280 12 45 528 1 559 7.12e-103 320
Msa0367200 AT5G67385.3 35.044 565 280 12 45 528 1 559 7.12e-103 320
Msa0367200 AT2G47860.1 35.209 551 259 11 7 469 21 561 9.01e-102 320
Msa0367200 AT3G08570.1 34.392 567 287 12 19 507 30 589 1.00e-97 308
Msa0367200 AT1G30440.1 32.263 623 302 13 11 515 12 632 3.44e-97 308
Msa0367200 AT2G47860.3 33.798 574 259 12 7 469 21 584 1.50e-96 306
Msa0367200 AT3G08660.1 35.568 537 290 15 19 505 30 560 3.66e-96 303
Msa0367200 AT5G03250.1 34.661 502 235 10 9 423 10 505 5.58e-90 288
Msa0367200 AT3G08660.3 34.257 505 277 13 51 505 1 500 6.77e-88 280
Msa0367200 AT5G13600.1 33.271 538 273 12 18 471 20 555 1.04e-87 282
Msa0367200 AT3G49970.1 33.394 554 262 16 37 528 7 515 1.39e-83 269
Msa0367200 AT3G49970.2 33.394 554 262 16 37 528 7 515 1.39e-83 269
Msa0367200 AT5G66560.1 31.183 651 284 15 16 507 10 655 4.00e-79 261
Msa0367200 AT3G50840.1 33.650 526 269 12 10 470 1 511 3.67e-77 253
Msa0367200 AT2G47860.4 35.499 431 204 9 7 370 21 444 4.68e-77 249
Msa0367200 AT2G14820.2 31.924 473 249 6 22 425 25 493 1.02e-76 254
Msa0367200 AT2G14820.1 31.924 473 249 6 22 425 25 493 1.02e-76 254
Msa0367200 AT5G66560.4 32.734 556 255 12 66 507 66 616 5.40e-75 249
Msa0367200 AT5G66560.3 32.734 556 255 12 66 507 76 626 6.39e-75 249
Msa0367200 AT2G47860.6 33.700 454 204 10 7 370 21 467 1.04e-71 236
Msa0367200 AT1G67900.5 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT1G67900.1 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT1G67900.3 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT1G67900.6 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT1G67900.2 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT1G67900.4 31.864 499 247 5 21 429 23 518 1.06e-68 233
Msa0367200 AT3G50840.2 33.469 490 247 11 45 470 1 475 1.07e-68 230
Msa0367200 AT3G50840.3 33.469 490 247 11 45 470 1 475 1.07e-68 230
Msa0367200 AT4G31820.1 30.501 459 242 7 23 420 26 468 3.07e-68 230
Msa0367200 AT3G44820.1 28.495 558 293 11 18 470 17 573 1.36e-67 230
Msa0367200 AT3G08660.2 35.533 394 207 11 19 371 30 417 3.62e-67 223
Msa0367200 AT2G47860.5 32.816 451 205 10 109 469 1 443 6.63e-67 225
Msa0367200 AT2G47860.2 32.816 451 205 10 109 469 1 443 6.63e-67 225
Msa0367200 AT5G67440.3 32.328 464 239 9 21 420 24 476 1.20e-66 226
Msa0367200 AT5G67440.1 32.328 464 239 9 21 420 24 476 1.20e-66 226
Msa0367200 AT5G47800.3 28.692 474 277 7 19 436 21 489 7.86e-64 218
Msa0367200 AT5G47800.1 28.692 474 277 7 19 436 21 489 7.86e-64 218
Msa0367200 AT5G47800.4 28.692 474 277 7 19 436 21 489 7.86e-64 218
Msa0367200 AT4G37590.1 30.689 479 244 9 21 435 24 478 2.46e-63 217
Msa0367200 AT2G23050.1 30.283 459 244 7 21 428 24 457 2.65e-63 214
Msa0367200 AT5G47800.2 28.936 470 273 7 23 436 138 602 2.12e-62 216
Msa0367200 AT5G67440.2 31.390 446 231 9 39 420 5 439 1.87e-59 206
Msa0367200 AT5G03250.2 31.830 399 182 8 109 423 1 393 1.08e-58 202
Msa0367200 AT5G66560.2 31.723 476 199 11 16 370 10 480 3.05e-58 201
Msa0367200 AT4G31820.2 29.234 431 228 7 51 420 1 415 3.10e-58 202
Msa0367200 AT3G26490.1 29.485 485 253 9 21 418 23 505 1.16e-56 199
Msa0367200 AT3G26490.3 29.485 485 253 9 21 418 23 505 1.16e-56 199
Msa0367200 AT3G26490.4 29.485 485 253 9 21 418 23 505 1.16e-56 199
Msa0367200 AT1G52770.1 34.177 316 174 7 209 503 101 403 2.32e-43 160
Msa0367200 AT3G15570.1 40.553 217 112 2 209 421 106 309 3.18e-43 160
Msa0367200 AT5G48130.1 28.205 468 254 14 18 427 33 476 1.75e-42 160
Msa0367200 AT3G26490.2 28.731 449 229 10 21 380 23 469 4.37e-42 157
Msa0367200 AT3G19850.1 25.383 457 258 7 37 419 17 464 1.04e-41 157
Msa0367200 AT5G64330.2 36.889 225 101 3 14 197 42 266 6.19e-41 157
Msa0367200 AT5G64330.2 35.470 234 129 1 210 421 373 606 7.63e-40 154
Msa0367200 AT5G64330.1 36.889 225 101 3 14 197 42 266 7.99e-41 157
Msa0367200 AT5G64330.1 28.693 352 203 3 210 513 373 724 8.63e-41 157
Msa0367200 AT5G64330.3 35.470 234 129 1 210 421 314 547 6.40e-40 153
Msa0367200 AT5G64330.3 36.634 202 87 3 37 197 6 207 2.85e-32 131
Msa0367200 AT2G23050.2 27.596 366 194 6 109 428 1 341 1.43e-36 139
Msa0367200 AT1G50280.1 26.535 456 253 10 33 414 13 460 4.63e-36 141
Msa0367200 AT1G50280.2 27.033 418 228 9 66 414 18 427 8.48e-35 137
Msa0367200 AT5G10250.2 30.035 283 164 5 209 472 293 560 1.98e-33 134
Msa0367200 AT5G10250.2 35.676 185 113 3 18 197 44 227 1.63e-31 129
Msa0367200 AT5G10250.1 31.502 273 158 6 209 472 293 545 2.55e-32 131
Msa0367200 AT5G10250.1 35.676 185 113 3 18 197 44 227 1.61e-31 129
Msa0367200 AT3G03510.1 25.893 448 288 12 74 497 4 431 2.49e-31 126
Msa0367200 AT5G17580.2 25.446 448 273 11 26 422 22 459 2.32e-29 122
Msa0367200 AT5G17580.1 25.446 448 273 11 26 422 7 444 3.67e-29 121
Msa0367200 AT3G22104.1 25.977 435 247 16 26 405 6 420 1.23e-26 113
Msa0367200 AT3G22104.4 25.485 361 197 13 96 404 4 344 1.81e-18 88.2
Msa0367200 AT3G22104.2 25.485 361 197 13 96 404 4 344 1.81e-18 88.2
Msa0367200 AT3G22104.3 25.485 361 197 13 96 404 4 344 1.81e-18 88.2
Msa0367200 AT3G49900.2 32.934 167 89 7 9 163 49 204 4.56e-13 72.0
Msa0367200 AT3G49900.1 32.934 167 89 7 9 163 49 204 4.57e-13 72.0

Find 130 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGCCCATCTTCTAAA+TGG 0.198824 3_1:+62770256 None:intergenic
GTTAATATATAAGGACATTT+TGG 0.214594 3_1:+62772714 None:intergenic
TGAACTTCTATGGTTGGTTT+TGG 0.265183 3_1:+62772599 None:intergenic
ATTCGCCTCGCTGCAGGCCT+TGG 0.302123 3_1:+62771765 None:intergenic
GAACTCACCGACGTCGTTCC+AGG 0.323263 3_1:+62770357 None:intergenic
CACAATACTGATCAGTCATT+TGG 0.343048 3_1:+62771941 None:intergenic
CTACATCAGAAAACTAATAA+TGG 0.343477 3_1:-62772115 Msa0367200:CDS
CTTTCGATTTCATCTAGCTT+TGG 0.349959 3_1:+62770666 None:intergenic
AACATTGAACTTTGTGTTTG+TGG 0.357568 3_1:+62772794 None:intergenic
CACAGCGTTCCACGATGTTT+AGG 0.358430 3_1:+62771803 None:intergenic
ATGGCAAGAGAAAGTCTATT+AGG 0.360996 3_1:+62772565 None:intergenic
GATTGATAATTGATTCTAGA+AGG 0.367450 3_1:+62771245 None:intergenic
GCTGCTTTCTCAAAGATTCC+AGG 0.370649 3_1:+62772039 None:intergenic
TTAGCCGCCATGAACTTCTA+TGG 0.375043 3_1:+62772589 None:intergenic
AGAGAAAGTATGCAGTATAA+TGG 0.385082 3_1:-62770643 Msa0367200:CDS
GGTGGGTGGGTTAATATATA+AGG 0.390757 3_1:+62772705 None:intergenic
GCCGCTCACCCGCGAATTGG+TGG 0.411115 3_1:-62771735 Msa0367200:CDS
ATCGTAAAACTGCGACATTA+TGG 0.413061 3_1:+62771980 None:intergenic
CTAGCCGCTCACCCGCGAAT+TGG 0.415900 3_1:-62771738 Msa0367200:CDS
TGAGATTCGTTTCTCGAGTT+CGG 0.432245 3_1:+62771129 None:intergenic
CTCAGCATCTCAAAATTCAA+TGG 0.447229 3_1:-62770872 Msa0367200:CDS
TCTGACATACCAGGAGGTCC+TGG 0.459917 3_1:-62772057 Msa0367200:CDS
AATTCGCGGGTGAGCGGCTA+GGG 0.462163 3_1:+62771740 None:intergenic
AGGGAAATTCGCCTCGCTGC+AGG 0.464006 3_1:+62771759 None:intergenic
TCTCTTGCCATGGAGAGAAC+TGG 0.465318 3_1:-62772553 Msa0367200:CDS
CACAGGCCCATCTTCTAAAT+GGG 0.466417 3_1:+62770257 None:intergenic
TCAAAGATTCCAGGACCTCC+TGG 0.468786 3_1:+62772048 None:intergenic
CCGCCATGAACTTCTATGGT+TGG 0.474905 3_1:+62772593 None:intergenic
GATGTTTAGGTCATCGGCAT+AGG 0.480481 3_1:+62771816 None:intergenic
AATAGAGAACCTTCTTCTCC+TGG 0.481171 3_1:+62770221 None:intergenic
GACAATGAATTGCATGGTGG+TGG 0.482861 3_1:+62772687 None:intergenic
CATCGACGGTTACGTGTTCA+AGG 0.483329 3_1:+62771101 None:intergenic
CTGGGCTTTGTCAAATCCAC+AGG 0.488999 3_1:+62770240 None:intergenic
GTCACAGAATAAACGGTTAC+CGG 0.491294 3_1:-62770583 Msa0367200:CDS
TGACAAAGCCCAGGAGAAGA+AGG 0.492154 3_1:-62770230 Msa0367200:CDS
AATGATTCTTTGAGTTCTCC+CGG 0.492260 3_1:+62770965 None:intergenic
CATCTCAGGATTCGTTGAAA+AGG 0.493684 3_1:-62771011 Msa0367200:CDS
AGACGGTGGAGGCGCGGAGG+TGG 0.493981 3_1:+62771158 None:intergenic
AAACCAACCATAGAAGTTCA+TGG 0.495006 3_1:-62772596 Msa0367200:exon
TGCATGCGTCACAGAATAAA+CGG 0.496682 3_1:-62770590 Msa0367200:CDS
GATACGGCCCATTTAGAAGA+TGG 0.496730 3_1:-62770264 Msa0367200:CDS
TAGAGAGAAATTCATCGGTC+CGG 0.497651 3_1:+62771902 None:intergenic
GAAGATGAAGATGTACATTA+CGG 0.501299 3_1:-62770406 Msa0367200:CDS
ATCAAGAACAGCTAGTTCTT+CGG 0.501513 3_1:+62771711 None:intergenic
CGCAACGGAGGAGGCAGCAG+AGG 0.501740 3_1:+62771185 None:intergenic
CTCGCTGAAATCGCCGCGTA+CGG 0.501994 3_1:-62770899 Msa0367200:CDS
TTCTTCGGTCCACCAATTCG+CGG 0.505119 3_1:+62771726 None:intergenic
TGTTGAAGCTGCAAGCGCCA+AGG 0.505313 3_1:-62771782 Msa0367200:CDS
GGAAAAGCTGCTTTCTCCGA+TGG 0.507789 3_1:+62771217 None:intergenic
TAATAGACTTTCTCTTGCCA+TGG 0.513045 3_1:-62772563 Msa0367200:CDS
GGTGGATTGCGCAACGGAGG+AGG 0.517135 3_1:+62771176 None:intergenic
CAATTCGCGGGTGAGCGGCT+AGG 0.520783 3_1:+62771739 None:intergenic
AAATTTATGACTGAGTTAGC+TGG 0.521430 3_1:+62772665 None:intergenic
TCTTCGGTCCACCAATTCGC+GGG 0.531063 3_1:+62771727 None:intergenic
AAAGCAGCTAAATTCTGTTA+CGG 0.532489 3_1:-62772024 Msa0367200:CDS
GGTCATCGGCATAGGGAAGA+AGG 0.536469 3_1:+62771824 None:intergenic
TCCACCAATTCGCGGGTGAG+CGG 0.536505 3_1:+62771734 None:intergenic
TTCCACGATGTTTAGGTCAT+CGG 0.543178 3_1:+62771810 None:intergenic
GACGGATGTGTCGTTGGTGA+GGG 0.544324 3_1:-62770457 Msa0367200:CDS
AGAATGCGACGGAGCTTCGA+CGG 0.544942 3_1:-62770496 Msa0367200:CDS
CAGCAGAAGAACGTTACGCC+TGG 0.545309 3_1:-62770375 Msa0367200:CDS
CGACGGATGTGTCGTTGGTG+AGG 0.545411 3_1:-62770458 Msa0367200:CDS
TTTAGCGACGGATGTGTCGT+TGG 0.546279 3_1:-62770463 Msa0367200:CDS
ACTGATGTTATAGTTGAAGT+AGG 0.549573 3_1:-62772404 Msa0367200:CDS
ACTTCAACTATAACATCAGT+TGG 0.549705 3_1:+62772407 None:intergenic
CGCCACACGCAGCATAGCGA+CGG 0.549727 3_1:+62770940 None:intergenic
AGCGTTCGCAGAGTCATCTC+AGG 0.551426 3_1:-62771025 Msa0367200:CDS
GGAGCCGGTGAGAGTGAAGA+AGG 0.553408 3_1:+62771873 None:intergenic
CGGCGTCAACTTCGAGATAA+CGG 0.554901 3_1:-62772004 Msa0367200:CDS
CGCATGCACTCGCGCCTCGT+AGG 0.555314 3_1:+62770605 None:intergenic
GTCGCCTTCTTCACTCTCAC+CGG 0.555603 3_1:-62771877 Msa0367200:CDS
ATAGAGAACCTTCTTCTCCT+GGG 0.555992 3_1:+62770222 None:intergenic
ATGAATTGCATGGTGGTGGG+TGG 0.555992 3_1:+62772691 None:intergenic
GAAGAGTTTCTCGCCGTCGT+AGG 0.556907 3_1:+62771057 None:intergenic
ATGTTTAGGTCATCGGCATA+GGG 0.559679 3_1:+62771817 None:intergenic
GTGACAATAACCTCGCTGGC+CGG 0.561136 3_1:-62771921 Msa0367200:CDS
ATGATTGCAGTTCATGTTGG+TGG 0.563694 3_1:-62772148 Msa0367200:intron
CTTGAGGACTGTAACGGAGC+CGG 0.565412 3_1:+62771858 None:intergenic
CGCCGTTGATATCTATCTCA+AGG 0.566265 3_1:-62770795 Msa0367200:intron
AGGCAGCAGAGGAAGTTGAT+CGG 0.571060 3_1:+62771196 None:intergenic
ATACGGCCCATTTAGAAGAT+GGG 0.571365 3_1:-62770263 Msa0367200:CDS
GACTTTAGAGAGAAATTCAT+CGG 0.574545 3_1:+62771897 None:intergenic
GAAAAGCTGCTTTCTCCGAT+GGG 0.576808 3_1:+62771218 None:intergenic
CGCGGAGGTGGATTGCGCAA+CGG 0.577702 3_1:+62771170 None:intergenic
CCATTGGCCAGTTCTCTCCA+TGG 0.580279 3_1:+62772546 None:intergenic
GCCTCGTAGGAAAGCTTCAA+CGG 0.586218 3_1:+62770618 None:intergenic
GAAGGTGGTGGCAAGACTTG+AGG 0.587288 3_1:+62771842 None:intergenic
CGGCATAGGGAAGAAGGTGG+TGG 0.587751 3_1:+62771830 None:intergenic
CTGTGGATTTGACAAAGCCC+AGG 0.588085 3_1:-62770239 Msa0367200:CDS
GTCGTTGGTGAGGGAGAATG+AGG 0.593999 3_1:-62770448 Msa0367200:CDS
TATTGTGACAATAACCTCGC+TGG 0.595754 3_1:-62771925 Msa0367200:CDS
CTCCGTCGCTATGCTGCGTG+TGG 0.597224 3_1:-62770942 Msa0367200:CDS
TGAATTGCATGGTGGTGGGT+GGG 0.603256 3_1:+62772692 None:intergenic
TGCAGACGGTGGAGGCGCGG+AGG 0.606407 3_1:+62771155 None:intergenic
ACTACGATCAGTTGAAGTTG+AGG 0.608135 3_1:-62770536 Msa0367200:CDS
AATATGATTGCAGTTCATGT+TGG 0.613034 3_1:-62772151 Msa0367200:intron
TACCTTGAGATAGATATCAA+CGG 0.618572 3_1:+62770793 None:intergenic
GGAGAATGAGGAGTTACGAT+CGG 0.618799 3_1:-62770436 Msa0367200:CDS
TTCAGCGAGGTACATGTCGA+CGG 0.620480 3_1:+62770913 None:intergenic
AGCTCGTTTCTGCCTCCACA+AGG 0.622318 3_1:-62772378 Msa0367200:intron
ATAGATCTATCTGACATACC+AGG 0.624439 3_1:-62772066 Msa0367200:CDS
AATTATCAATCTCTTCCCAT+CGG 0.625194 3_1:-62771233 Msa0367200:CDS
TCCGTTGAAGCTTTCCTACG+AGG 0.627491 3_1:-62770619 Msa0367200:CDS
GCGTGTAAAACTATCTGCAC+CGG 0.627565 3_1:+62770564 None:intergenic
GCGACGGAGCTTCGACGGAG+AGG 0.630390 3_1:-62770491 Msa0367200:CDS
CCATGGAGAGAACTGGCCAA+TGG 0.634800 3_1:-62772546 Msa0367200:intron
ACAATGAATTGCATGGTGGT+GGG 0.636959 3_1:+62772688 None:intergenic
CATCACGAGGAGGTCATCGA+CGG 0.639716 3_1:+62771087 None:intergenic
GCAAGACTTGAGGACTGTAA+CGG 0.643560 3_1:+62771852 None:intergenic
GGAGGTGGATTGCGCAACGG+AGG 0.652208 3_1:+62771173 None:intergenic
GGAGAGGAATCGTTTAGCGA+CGG 0.657325 3_1:-62770475 Msa0367200:CDS
ATTCATCGGTCCGGCCAGCG+AGG 0.661189 3_1:+62771911 None:intergenic
GATCAGTTGAAGTTGAGGAG+TGG 0.665109 3_1:-62770531 Msa0367200:CDS
CGTAGGAGAATGACATCACG+AGG 0.666273 3_1:+62771074 None:intergenic
GATGCTGAGTTCACCGTACG+CGG 0.666328 3_1:+62770886 None:intergenic
TCAGACGACGGAGAATGCGA+CGG 0.675092 3_1:-62770507 Msa0367200:CDS
CCATTTAGAAGATGGGCCTG+TGG 0.683204 3_1:-62770256 Msa0367200:CDS
TTGAGGAGTGGATCAGACGA+CGG 0.684167 3_1:-62770519 Msa0367200:CDS
GTGATGTCATTCTCCTACGA+CGG 0.684941 3_1:-62771070 Msa0367200:CDS
TGCCGATGACCTAAACATCG+TGG 0.692060 3_1:-62771812 Msa0367200:CDS
AAGCGCCAAGGCCTGCAGCG+AGG 0.703083 3_1:-62771770 Msa0367200:CDS
CATCGGCATAGGGAAGAAGG+TGG 0.713733 3_1:+62771827 None:intergenic
TAGCTGGACAATGAATTGCA+TGG 0.734784 3_1:+62772681 None:intergenic
CGTTACGCCTGGAACGACGT+CGG 0.742115 3_1:-62770364 Msa0367200:CDS
AGGAGAATGACATCACGAGG+AGG 0.751905 3_1:+62771077 None:intergenic
GATCTATCTGACATACCAGG+AGG 0.759206 3_1:-62772063 Msa0367200:CDS
TGAGATAGATATCAACGGCG+CGG 0.763641 3_1:+62770798 None:intergenic
CGTACGCGGCGATTTCAGCG+AGG 0.778421 3_1:+62770900 None:intergenic
CTGGACAATGAATTGCATGG+TGG 0.791704 3_1:+62772684 None:intergenic
CCAACCATAGAAGTTCATGG+CGG 0.819770 3_1:-62772593 Msa0367200:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTACAAATATTCTAAAT+AGG + chr3_1:62771469-62771488 None:intergenic 15.0%
!!! GTTAATATATAAGGACATTT+TGG + chr3_1:62770311-62770330 None:intergenic 20.0%
!! TCAAAGTACAAAATAGAAAA+TGG + chr3_1:62770564-62770583 None:intergenic 20.0%
!! ATGAACAATATAATTCACAT+GGG + chr3_1:62770684-62770703 None:intergenic 20.0%
!! TATGAACAATATAATTCACA+TGG + chr3_1:62770685-62770704 None:intergenic 20.0%
!! AAAGAATACCTTAACAAATT+TGG - chr3_1:62772257-62772276 Msa0367200:intron 20.0%
!!! ATTCAAATCCAAATTTGTTA+AGG + chr3_1:62772268-62772287 None:intergenic 20.0%
!! AAAATACAAACTCGTTTAAA+CGG + chr3_1:62772322-62772341 None:intergenic 20.0%
! TGTACTTTGATTATTATTCC+AGG - chr3_1:62770574-62770593 Msa0367200:CDS 25.0%
! GTACTTTGATTATTATTCCA+GGG - chr3_1:62770575-62770594 Msa0367200:CDS 25.0%
! CTACATCAGAAAACTAATAA+TGG - chr3_1:62770907-62770926 Msa0367200:CDS 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr3_1:62771455-62771474 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr3_1:62771456-62771475 None:intergenic 25.0%
!! TTCAGTTTAAAATTGTGCAT+TGG - chr3_1:62771631-62771650 Msa0367200:intron 25.0%
!! GATTGATAATTGATTCTAGA+AGG + chr3_1:62771780-62771799 None:intergenic 25.0%
!!! CGAGTTTGTATTTTTTTTTC+AGG - chr3_1:62772328-62772347 Msa0367200:intron 25.0%
AACATTGAACTTTGTGTTTG+TGG + chr3_1:62770231-62770250 None:intergenic 30.0%
AAATTTATGACTGAGTTAGC+TGG + chr3_1:62770360-62770379 None:intergenic 30.0%
ACTTCAACTATAACATCAGT+TGG + chr3_1:62770618-62770637 None:intergenic 30.0%
ACTGATGTTATAGTTGAAGT+AGG - chr3_1:62770618-62770637 Msa0367200:CDS 30.0%
!!! AATTCACATGGGTCATTTTT+TGG + chr3_1:62770673-62770692 None:intergenic 30.0%
GTGATCACATTTATTGATGT+TGG + chr3_1:62770774-62770793 None:intergenic 30.0%
ATAAATGTGATCACATGTGT+CGG - chr3_1:62770780-62770799 Msa0367200:intron 30.0%
AATATGATTGCAGTTCATGT+TGG - chr3_1:62770871-62770890 Msa0367200:CDS 30.0%
AAAGCAGCTAAATTCTGTTA+CGG - chr3_1:62770998-62771017 Msa0367200:CDS 30.0%
! GACTTTAGAGAGAAATTCAT+CGG + chr3_1:62771128-62771147 None:intergenic 30.0%
TCAACTAGGTCAAGTAATAT+GGG - chr3_1:62771668-62771687 Msa0367200:intron 30.0%
AATTATCAATCTCTTCCCAT+CGG - chr3_1:62771789-62771808 Msa0367200:CDS 30.0%
TACCTTGAGATAGATATCAA+CGG + chr3_1:62772232-62772251 None:intergenic 30.0%
! AGAGAAAGTATGCAGTATAA+TGG - chr3_1:62772379-62772398 Msa0367200:CDS 30.0%
GAAGATGAAGATGTACATTA+CGG - chr3_1:62772616-62772635 Msa0367200:five_prime_UTR 30.0%
!!! TGAACTTCTATGGTTGGTTT+TGG + chr3_1:62770426-62770445 None:intergenic 35.0%
AAACCAACCATAGAAGTTCA+TGG - chr3_1:62770426-62770445 Msa0367200:CDS 35.0%
ATGGCAAGAGAAAGTCTATT+AGG + chr3_1:62770460-62770479 None:intergenic 35.0%
TAATAGACTTTCTCTTGCCA+TGG - chr3_1:62770459-62770478 Msa0367200:CDS 35.0%
TTTAGTGTGTTGTGTACCAT+TGG + chr3_1:62770495-62770514 None:intergenic 35.0%
TGCATGCATGGATTTGAAAA+TGG + chr3_1:62770525-62770544 None:intergenic 35.0%
!!! ATTTTTTGGATACCTTGTGG+AGG + chr3_1:62770659-62770678 None:intergenic 35.0%
!!! GTCATTTTTTGGATACCTTG+TGG + chr3_1:62770662-62770681 None:intergenic 35.0%
ATAGATCTATCTGACATACC+AGG - chr3_1:62770956-62770975 Msa0367200:CDS 35.0%
ATCGTAAAACTGCGACATTA+TGG + chr3_1:62771045-62771064 None:intergenic 35.0%
CACAATACTGATCAGTCATT+TGG + chr3_1:62771084-62771103 None:intergenic 35.0%
! ATCAAGAACAGCTAGTTCTT+CGG + chr3_1:62771314-62771333 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr3_1:62771451-62771470 None:intergenic 35.0%
GTCAACTAGGTCAAGTAATA+TGG - chr3_1:62771667-62771686 Msa0367200:intron 35.0%
ATTCACTGTAATCTGATGAC+TGG + chr3_1:62771732-62771751 None:intergenic 35.0%
! AATGATTCTTTGAGTTCTCC+CGG + chr3_1:62772060-62772079 None:intergenic 35.0%
CTCAGCATCTCAAAATTCAA+TGG - chr3_1:62772150-62772169 Msa0367200:intron 35.0%
! CTTTCGATTTCATCTAGCTT+TGG + chr3_1:62772359-62772378 None:intergenic 35.0%
TTCTTCTGTGTCGAAAAAAC+TGG - chr3_1:62772709-62772728 Msa0367200:five_prime_UTR 35.0%
TCTTCTGTGTCGAAAAAACT+GGG - chr3_1:62772710-62772729 Msa0367200:five_prime_UTR 35.0%
CTGGGAAAGTTGTTCAAAAA+TGG - chr3_1:62772728-62772747 Msa0367200:five_prime_UTR 35.0%
!! GGTGGGTGGGTTAATATATA+AGG + chr3_1:62770320-62770339 None:intergenic 40.0%
ACAATGAATTGCATGGTGGT+GGG + chr3_1:62770337-62770356 None:intergenic 40.0%
TAGCTGGACAATGAATTGCA+TGG + chr3_1:62770344-62770363 None:intergenic 40.0%
!!! TTGGTTTTGGTATGTGGACT+TGG + chr3_1:62770413-62770432 None:intergenic 40.0%
!!! CTATGGTTGGTTTTGGTATG+TGG + chr3_1:62770419-62770438 None:intergenic 40.0%
AACTTCTTGAGAGAAAACCC+TGG + chr3_1:62770595-62770614 None:intergenic 40.0%
ATGATTGCAGTTCATGTTGG+TGG - chr3_1:62770874-62770893 Msa0367200:CDS 40.0%
TATTGTGACAATAACCTCGC+TGG - chr3_1:62771097-62771116 Msa0367200:CDS 40.0%
TAGAGAGAAATTCATCGGTC+CGG + chr3_1:62771123-62771142 None:intergenic 40.0%
ATGTTTAGGTCATCGGCATA+GGG + chr3_1:62771208-62771227 None:intergenic 40.0%
TTCCACGATGTTTAGGTCAT+CGG + chr3_1:62771215-62771234 None:intergenic 40.0%
ATCACATGTATGAAACAGCG+CGG - chr3_1:62771355-62771374 Msa0367200:intron 40.0%
CTAGGTCAAGTAATATGGGA+CGG - chr3_1:62771672-62771691 Msa0367200:intron 40.0%
TGAGATTCGTTTCTCGAGTT+CGG + chr3_1:62771896-62771915 None:intergenic 40.0%
CATCTCAGGATTCGTTGAAA+AGG - chr3_1:62772011-62772030 Msa0367200:CDS 40.0%
TGAAAAGGAGAAAAACGCAG+CGG - chr3_1:62772026-62772045 Msa0367200:CDS 40.0%
TGCATGCGTCACAGAATAAA+CGG - chr3_1:62772432-62772451 Msa0367200:intron 40.0%
GTCACAGAATAAACGGTTAC+CGG - chr3_1:62772439-62772458 Msa0367200:intron 40.0%
ACTACGATCAGTTGAAGTTG+AGG - chr3_1:62772486-62772505 Msa0367200:intron 40.0%
GTTGTTCAAAAATGGCGCTA+AGG - chr3_1:62772736-62772755 Msa0367200:five_prime_UTR 40.0%
CAAAAATGGCGCTAAGGATA+CGG - chr3_1:62772742-62772761 Msa0367200:five_prime_UTR 40.0%
ATACGGCCCATTTAGAAGAT+GGG - chr3_1:62772759-62772778 Msa0367200:five_prime_UTR 40.0%
ATAGAGAACCTTCTTCTCCT+GGG + chr3_1:62772803-62772822 None:intergenic 40.0%
AATAGAGAACCTTCTTCTCC+TGG + chr3_1:62772804-62772823 None:intergenic 40.0%
GACAATGAATTGCATGGTGG+TGG + chr3_1:62770338-62770357 None:intergenic 45.0%
CTGGACAATGAATTGCATGG+TGG + chr3_1:62770341-62770360 None:intergenic 45.0%
CCAACCATAGAAGTTCATGG+CGG - chr3_1:62770429-62770448 Msa0367200:CDS 45.0%
TTAGCCGCCATGAACTTCTA+TGG + chr3_1:62770436-62770455 None:intergenic 45.0%
GCATGTGTATGATGCATGCA+TGG + chr3_1:62770537-62770556 None:intergenic 45.0%
GATCTATCTGACATACCAGG+AGG - chr3_1:62770959-62770978 Msa0367200:CDS 45.0%
! GCTGCTTTCTCAAAGATTCC+AGG + chr3_1:62770986-62771005 None:intergenic 45.0%
GCAAGACTTGAGGACTGTAA+CGG + chr3_1:62771173-62771192 None:intergenic 45.0%
GATGTTTAGGTCATCGGCAT+AGG + chr3_1:62771209-62771228 None:intergenic 45.0%
TCACATGTATGAAACAGCGC+GGG - chr3_1:62771356-62771375 Msa0367200:intron 45.0%
CTCTGAGTATGTAATCAGCG+CGG + chr3_1:62771404-62771423 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr3_1:62771676-62771695 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG - chr3_1:62771654-62771673 Msa0367200:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr3_1:62771676-62771695 Msa0367200:intron 45.0%
TGATGACTGGATTCCGTTAC+CGG + chr3_1:62771719-62771738 None:intergenic 45.0%
! GAAAAGCTGCTTTCTCCGAT+GGG + chr3_1:62771807-62771826 None:intergenic 45.0%
GTGATGTCATTCTCCTACGA+CGG - chr3_1:62771952-62771971 Msa0367200:CDS 45.0%
! TCGATTTTACGCGCGTGTTT+AGG + chr3_1:62772192-62772211 None:intergenic 45.0%
TGAGATAGATATCAACGGCG+CGG + chr3_1:62772227-62772246 None:intergenic 45.0%
CGCCGTTGATATCTATCTCA+AGG - chr3_1:62772227-62772246 Msa0367200:intron 45.0%
GCGTGTAAAACTATCTGCAC+CGG + chr3_1:62772461-62772480 None:intergenic 45.0%
GATCAGTTGAAGTTGAGGAG+TGG - chr3_1:62772491-62772510 Msa0367200:intron 45.0%
GGAGAATGAGGAGTTACGAT+CGG - chr3_1:62772586-62772605 Msa0367200:exon 45.0%
GATACGGCCCATTTAGAAGA+TGG - chr3_1:62772758-62772777 Msa0367200:five_prime_UTR 45.0%
CACAGGCCCATCTTCTAAAT+GGG + chr3_1:62772768-62772787 None:intergenic 45.0%
!! TGAATTGCATGGTGGTGGGT+GGG + chr3_1:62770333-62770352 None:intergenic 50.0%
!! ATGAATTGCATGGTGGTGGG+TGG + chr3_1:62770334-62770353 None:intergenic 50.0%
CCGCCATGAACTTCTATGGT+TGG + chr3_1:62770432-62770451 None:intergenic 50.0%
TCTCTTGCCATGGAGAGAAC+TGG - chr3_1:62770469-62770488 Msa0367200:CDS 50.0%
TCAAAGATTCCAGGACCTCC+TGG + chr3_1:62770977-62770996 None:intergenic 50.0%
CGGCGTCAACTTCGAGATAA+CGG - chr3_1:62771018-62771037 Msa0367200:CDS 50.0%
TGCCGATGACCTAAACATCG+TGG - chr3_1:62771210-62771229 Msa0367200:CDS 50.0%
CACAGCGTTCCACGATGTTT+AGG + chr3_1:62771222-62771241 None:intergenic 50.0%
TTCTTCGGTCCACCAATTCG+CGG + chr3_1:62771299-62771318 None:intergenic 50.0%
CACATGTATGAAACAGCGCG+GGG - chr3_1:62771357-62771376 Msa0367200:intron 50.0%
ATACTCAGAGCGATCACTCC+AGG - chr3_1:62771414-62771433 Msa0367200:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr3_1:62771675-62771694 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr3_1:62771675-62771694 Msa0367200:intron 50.0%
GGAGTAGTTCGAAACCACTC+CGG - chr3_1:62771697-62771716 Msa0367200:CDS 50.0%
GTTCGAAACCACTCCGGTAA+CGG - chr3_1:62771703-62771722 Msa0367200:CDS 50.0%
! GGAAAAGCTGCTTTCTCCGA+TGG + chr3_1:62771808-62771827 None:intergenic 50.0%
! AGGCAGCAGAGGAAGTTGAT+CGG + chr3_1:62771829-62771848 None:intergenic 50.0%
! CTCGAGTTCGGTTTTGCAGA+CGG + chr3_1:62771884-62771903 None:intergenic 50.0%
CATCGACGGTTACGTGTTCA+AGG + chr3_1:62771924-62771943 None:intergenic 50.0%
AGGAGAATGACATCACGAGG+AGG + chr3_1:62771948-62771967 None:intergenic 50.0%
CGTAGGAGAATGACATCACG+AGG + chr3_1:62771951-62771970 None:intergenic 50.0%
! AAACGCAGCGGTTTTCACTC+CGG - chr3_1:62772038-62772057 Msa0367200:CDS 50.0%
TTCAGCGAGGTACATGTCGA+CGG + chr3_1:62772112-62772131 None:intergenic 50.0%
TCCGTTGAAGCTTTCCTACG+AGG - chr3_1:62772403-62772422 Msa0367200:CDS 50.0%
GCCTCGTAGGAAAGCTTCAA+CGG + chr3_1:62772407-62772426 None:intergenic 50.0%
TTGAGGAGTGGATCAGACGA+CGG - chr3_1:62772503-62772522 Msa0367200:intron 50.0%
GGAGAGGAATCGTTTAGCGA+CGG - chr3_1:62772547-62772566 Msa0367200:CDS 50.0%
TTTAGCGACGGATGTGTCGT+TGG - chr3_1:62772559-62772578 Msa0367200:CDS 50.0%
CCACAGGCCCATCTTCTAAA+TGG + chr3_1:62772769-62772788 None:intergenic 50.0%
CCATTTAGAAGATGGGCCTG+TGG - chr3_1:62772766-62772785 Msa0367200:five_prime_UTR 50.0%
! CTGGGCTTTGTCAAATCCAC+AGG + chr3_1:62772785-62772804 None:intergenic 50.0%
CTGTGGATTTGACAAAGCCC+AGG - chr3_1:62772783-62772802 Msa0367200:five_prime_UTR 50.0%
TGACAAAGCCCAGGAGAAGA+AGG - chr3_1:62772792-62772811 Msa0367200:five_prime_UTR 50.0%
CCATTGGCCAGTTCTCTCCA+TGG + chr3_1:62770479-62770498 None:intergenic 55.0%
CCATGGAGAGAACTGGCCAA+TGG - chr3_1:62770476-62770495 Msa0367200:CDS 55.0%
AGCTCGTTTCTGCCTCCACA+AGG - chr3_1:62770644-62770663 Msa0367200:CDS 55.0%
GACAAGCCTTCGATCACAGG+CGG + chr3_1:62770728-62770747 None:intergenic 55.0%
CCAGACAAGCCTTCGATCAC+AGG + chr3_1:62770731-62770750 None:intergenic 55.0%
CCTGTGATCGAAGGCTTGTC+TGG - chr3_1:62770728-62770747 Msa0367200:intron 55.0%
TCTGACATACCAGGAGGTCC+TGG - chr3_1:62770965-62770984 Msa0367200:CDS 55.0%
GTGACAATAACCTCGCTGGC+CGG - chr3_1:62771101-62771120 Msa0367200:CDS 55.0%
GTCGCCTTCTTCACTCTCAC+CGG - chr3_1:62771145-62771164 Msa0367200:CDS 55.0%
! CTTGAGGACTGTAACGGAGC+CGG + chr3_1:62771167-62771186 None:intergenic 55.0%
! GAAGGTGGTGGCAAGACTTG+AGG + chr3_1:62771183-62771202 None:intergenic 55.0%
CATCGGCATAGGGAAGAAGG+TGG + chr3_1:62771198-62771217 None:intergenic 55.0%
GGTCATCGGCATAGGGAAGA+AGG + chr3_1:62771201-62771220 None:intergenic 55.0%
TGTTGAAGCTGCAAGCGCCA+AGG - chr3_1:62771240-62771259 Msa0367200:CDS 55.0%
TCTTCGGTCCACCAATTCGC+GGG + chr3_1:62771298-62771317 None:intergenic 55.0%
TGTAATCAGCGCGGCTGCAA+TGG + chr3_1:62771395-62771414 None:intergenic 55.0%
ACTGGATTCCGTTACCGGAG+TGG + chr3_1:62771714-62771733 None:intergenic 55.0%
! TTCGGTTTTGCAGACGGTGG+AGG + chr3_1:62771878-62771897 None:intergenic 55.0%
! GAGTTCGGTTTTGCAGACGG+TGG + chr3_1:62771881-62771900 None:intergenic 55.0%
CATCACGAGGAGGTCATCGA+CGG + chr3_1:62771938-62771957 None:intergenic 55.0%
GAAGAGTTTCTCGCCGTCGT+AGG + chr3_1:62771968-62771987 None:intergenic 55.0%
AGCGTTCGCAGAGTCATCTC+AGG - chr3_1:62771997-62772016 Msa0367200:CDS 55.0%
! AACGCAGCGGTTTTCACTCC+GGG - chr3_1:62772039-62772058 Msa0367200:CDS 55.0%
GATGCTGAGTTCACCGTACG+CGG + chr3_1:62772139-62772158 None:intergenic 55.0%
TCAGACGACGGAGAATGCGA+CGG - chr3_1:62772515-62772534 Msa0367200:intron 55.0%
AGAATGCGACGGAGCTTCGA+CGG - chr3_1:62772526-62772545 Msa0367200:intron 55.0%
! GACGGATGTGTCGTTGGTGA+GGG - chr3_1:62772565-62772584 Msa0367200:CDS 55.0%
! GTCGTTGGTGAGGGAGAATG+AGG - chr3_1:62772574-62772593 Msa0367200:CDS 55.0%
CAGCAGAAGAACGTTACGCC+TGG - chr3_1:62772647-62772666 Msa0367200:five_prime_UTR 55.0%
GGAGCCGGTGAGAGTGAAGA+AGG + chr3_1:62771152-62771171 None:intergenic 60.0%
CGGCATAGGGAAGAAGGTGG+TGG + chr3_1:62771195-62771214 None:intergenic 60.0%
AGGGAAATTCGCCTCGCTGC+AGG + chr3_1:62771266-62771285 None:intergenic 60.0%
AATTCGCGGGTGAGCGGCTA+GGG + chr3_1:62771285-62771304 None:intergenic 60.0%
TCCACCAATTCGCGGGTGAG+CGG + chr3_1:62771291-62771310 None:intergenic 60.0%
ATCAGCGCGGCTGCAATGGT+TGG + chr3_1:62771391-62771410 None:intergenic 60.0%
! TTTTGCAGACGGTGGAGGCG+CGG + chr3_1:62771873-62771892 None:intergenic 60.0%
CTCGCTGAAATCGCCGCGTA+CGG - chr3_1:62772123-62772142 Msa0367200:CDS 60.0%
! CGACGGATGTGTCGTTGGTG+AGG - chr3_1:62772564-62772583 Msa0367200:CDS 60.0%
CGTTACGCCTGGAACGACGT+CGG - chr3_1:62772658-62772677 Msa0367200:five_prime_UTR 60.0%
GAACTCACCGACGTCGTTCC+AGG + chr3_1:62772668-62772687 None:intergenic 60.0%
CTTGCGCCGCCTGTGATCGA+AGG - chr3_1:62770719-62770738 Msa0367200:intron 65.0%
ATTCATCGGTCCGGCCAGCG+AGG + chr3_1:62771114-62771133 None:intergenic 65.0%
ATTCGCCTCGCTGCAGGCCT+TGG + chr3_1:62771260-62771279 None:intergenic 65.0%
CAATTCGCGGGTGAGCGGCT+AGG + chr3_1:62771286-62771305 None:intergenic 65.0%
CTAGCCGCTCACCCGCGAAT+TGG - chr3_1:62771284-62771303 Msa0367200:CDS 65.0%
AGCGCGGCTGCAATGGTTGG+AGG + chr3_1:62771388-62771407 None:intergenic 65.0%
!! GGTGGATTGCGCAACGGAGG+AGG + chr3_1:62771849-62771868 None:intergenic 65.0%
!! GGAGGTGGATTGCGCAACGG+AGG + chr3_1:62771852-62771871 None:intergenic 65.0%
!! CGCGGAGGTGGATTGCGCAA+CGG + chr3_1:62771855-62771874 None:intergenic 65.0%
CTCCGTCGCTATGCTGCGTG+TGG - chr3_1:62772080-62772099 Msa0367200:CDS 65.0%
CGCCACACGCAGCATAGCGA+CGG + chr3_1:62772085-62772104 None:intergenic 65.0%
CGTACGCGGCGATTTCAGCG+AGG + chr3_1:62772125-62772144 None:intergenic 65.0%
AAGCGCCAAGGCCTGCAGCG+AGG - chr3_1:62771252-62771271 Msa0367200:CDS 70.0%
GCCGCTCACCCGCGAATTGG+TGG - chr3_1:62771287-62771306 Msa0367200:CDS 70.0%
GGGACGGAGGGAGTAGCTCC+TGG + chr3_1:62771435-62771454 None:intergenic 70.0%
CGCAACGGAGGAGGCAGCAG+AGG + chr3_1:62771840-62771859 None:intergenic 70.0%
CGCATGCACTCGCGCCTCGT+AGG + chr3_1:62772420-62772439 None:intergenic 70.0%
GCGACGGAGCTTCGACGGAG+AGG - chr3_1:62772531-62772550 Msa0367200:intron 70.0%
! AGACGGTGGAGGCGCGGAGG+TGG + chr3_1:62771867-62771886 None:intergenic 75.0%
! TGCAGACGGTGGAGGCGCGG+AGG + chr3_1:62771870-62771889 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 62770215 62772829 62770215 ID=Msa0367200;Name=Msa0367200
chr3_1 mRNA 62770215 62772829 62770215 ID=Msa0367200-mRNA-1;Parent=Msa0367200;Name=Msa0367200-mRNA-1;_AED=0.29;_eAED=0.29;_QI=230|0.5|0.4|1|1|1|5|0|528
chr3_1 exon 62770215 62770694 62770215 ID=Msa0367200-mRNA-1:exon:12251;Parent=Msa0367200-mRNA-1
chr3_1 exon 62770796 62771311 62770796 ID=Msa0367200-mRNA-1:exon:12250;Parent=Msa0367200-mRNA-1
chr3_1 exon 62771693 62772160 62771693 ID=Msa0367200-mRNA-1:exon:12249;Parent=Msa0367200-mRNA-1
chr3_1 exon 62772379 62772448 62772379 ID=Msa0367200-mRNA-1:exon:12248;Parent=Msa0367200-mRNA-1
chr3_1 exon 62772547 62772829 62772547 ID=Msa0367200-mRNA-1:exon:12247;Parent=Msa0367200-mRNA-1
chr3_1 five_prime_UTR 62772600 62772829 62772600 ID=Msa0367200-mRNA-1:five_prime_utr;Parent=Msa0367200-mRNA-1
chr3_1 CDS 62772547 62772599 62772547 ID=Msa0367200-mRNA-1:cds;Parent=Msa0367200-mRNA-1
chr3_1 CDS 62772379 62772448 62772379 ID=Msa0367200-mRNA-1:cds;Parent=Msa0367200-mRNA-1
chr3_1 CDS 62771693 62772160 62771693 ID=Msa0367200-mRNA-1:cds;Parent=Msa0367200-mRNA-1
chr3_1 CDS 62770796 62771311 62770796 ID=Msa0367200-mRNA-1:cds;Parent=Msa0367200-mRNA-1
chr3_1 CDS 62770215 62770694 62770215 ID=Msa0367200-mRNA-1:cds;Parent=Msa0367200-mRNA-1
Gene Sequence

>Msa0367200

ATGGCGGCTAATCCTAATAGACTTTCTCTTGCCATGGAGAGAACTGGCCAATGGGTTTTCTCTCAAGAAGTTCCAACTGATGTTATAGTTGAAGTAGGAGAAGCTCGTTTCTGCCTCCACAAGTTCATGTTGGTGGCAAAGAGCAACTACATCAGAAAACTAATAATGGAATCAGATGAGACTCATCTCACAAGAATAGATCTATCTGACATACCAGGAGGTCCTGGAATCTTTGAGAAAGCAGCTAAATTCTGTTACGGCGTCAACTTCGAGATAACGGTCCATAATGTCGCAGTTTTACGATGTGCAGCAGAGTTTCTCCAAATGACTGATCAGTATTGTGACAATAACCTCGCTGGCCGGACCGATGAATTTCTCTCTAAAGTCGCCTTCTTCACTCTCACCGGCTCCGTTACAGTCCTCAAGTCTTGCCACCACCTTCTTCCCTATGCCGATGACCTAAACATCGTGGAACGCTGTGTTGAAGCTGCAAGCGCCAAGGCCTGCAGCGAGGCGAATTTCCCTAGCCGCTCACCCGCGAATTGGTGGACCGAAGAACTAGCTGTTCTTGATATCGATTTCTTCAGTAGATCATCAGATTACAGTGAATCAGACATTAGATCAAAACAAAGAAGCCTTCTAGAATCAATTATCAATCTCTTCCCATCGGAGAAAGCAGCTTTTCCGATCAACTTCCTCTGCTGCCTCCTCCGTTGCGCAATCCACCTCCGCGCCTCCACCGTCTGCAAAACCGAACTCGAGAAACGAATCTCAGCAATCCTTGAACACGTAACCGTCGATGACCTCCTCGTGATGTCATTCTCCTACGACGGCGAGAAACTCTTCGATCTAGAAAGCGTTCGCAGAGTCATCTCAGGATTCGTTGAAAAGGAGAAAAACGCAGCGGTTTTCACTCCGGGAGAACTCAAAGAATCATTCTCCGTCGCTATGCTGCGTGTGGCGAAAACCGTCGACATGTACCTCGCTGAAATCGCCGCGTACGGTGAACTCAGCATCTCAAAATTCAATGGAATCGCTGTTCTTATTCCTAAACACGCGCGTAAAATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGCTAGATGAAATCGAAAGAGAGAAAGTATGCAGTATAATGGATCCGTTGAAGCTTTCCTACGAGGCGCGAGTGCATGCGTCACAGAATAAACGGTTACCGGTGCAGATAGTTTTACACGCGCTATACTACGATCAGTTGAAGTTGAGGAGTGGATCAGACGACGGAGAATGCGACGGAGCTTCGACGGAGAGGAATCGTTTAGCGACGGATGTGTCGTTGGTGAGGGAGAATGAGGAGTTACGATCGGAATTGACGAAGATGAAGATGTACATTACGGATATGCAGCAGCAGAAGAACGTTACGCCTGGAACGACGTCGGTGAGTTCGAGTAAGAAGACAACGTTTTTTTCTTCTGTGTCGAAAAAACTGGGAAAGTTGTTCAAAAATGGCGCTAAGGATACGGCCCATTTAGAAGATGGGCCTGTGGATTTGACAAAGCCCAGGAGAAGAAGGTTCTCTATTTCTTAA
Protein sequence

>Msa0367200

MAANPNRLSLAMERTGQWVFSQEVPTDVIVEVGEARFCLHKFMLVAKSNYIRKLIMESDETHLTRIDLSDIPGGPGIFEKAAKFCYGVNFEITVHNVAVLRCAAEFLQMTDQYCDNNLAGRTDEFLSKVAFFTLTGSVTVLKSCHHLLPYADDLNIVERCVEAASAKACSEANFPSRSPANWWTEELAVLDIDFFSRSSDYSESDIRSKQRSLLESIINLFPSEKAAFPINFLCCLLRCAIHLRASTVCKTELEKRISAILEHVTVDDLLVMSFSYDGEKLFDLESVRRVISGFVEKEKNAAVFTPGELKESFSVAMLRVAKTVDMYLAEIAAYGELSISKFNGIAVLIPKHARKIDDDLYRAVDIYLKVHPKLDEIEREKVCSIMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGSDDGECDGASTERNRLATDVSLVRENEELRSELTKMKMYITDMQQQKNVTPGTTSVSSSKKTTFFSSVSKKLGKLFKNGAKDTAHLEDGPVDLTKPRRRRFSIS*