AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526840 MtrunA17_Chr7g0231891 96.875 32 1 0 56 87 109 140 3.59e-16 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526840 AT4G00030.1 52.727 55 18 1 33 87 163 209 2.01e-11 57.8

Find 28 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCATTCTTTCCAGTTAT+AGG 0.262596 3_4:+80974847 None:intergenic
CTTTGCACTTAACTAGTCTT+TGG 0.275001 3_4:-80974746 Msa0526840:three_prime_UTR
TTCGAGTTGCAAAGGATATC+AGG 0.283632 3_4:-80974898 Msa0526840:CDS
TTTCTACTCAACTGCCTCTA+TGG 0.328123 3_4:-80974781 Msa0526840:three_prime_UTR
TGTTCTGCCAACTGAGCTTC+AGG 0.339771 3_4:-80975940 Msa0526840:CDS
TGTTATATCTTTCATTCTGC+TGG 0.367200 3_4:+80974507 None:intergenic
GTTGAAAGAGTACAAGATTC+AGG 0.368354 3_4:+80974529 None:intergenic
TCGACCGAGCTTCCTATAAC+TGG 0.375626 3_4:-80974859 Msa0526840:CDS
TCTCCTCGAACTTGACGTTT+AGG 0.387091 3_4:+80975903 None:intergenic
GACGTTTAGGAACTGAAGTC+TGG 0.467429 3_4:+80975916 None:intergenic
GTTGGCAGAACAGCTTCTAC+TGG 0.477097 3_4:+80975951 None:intergenic
GTTCCTAAACGTCAAGTTCG+AGG 0.481390 3_4:-80975906 Msa0526840:CDS
TTACTTTGAGGTGTATAAGA+TGG 0.494744 3_4:+80975621 None:intergenic
CTTTCCAGTTATAGGAAGCT+CGG 0.498636 3_4:+80974855 None:intergenic
GTCTGGTCCTGAAGCTCAGT+TGG 0.499975 3_4:+80975933 None:intergenic
CATTAAAGAAGACAAACAAA+TGG 0.527590 3_4:+80974809 None:intergenic
AAACGTCAAGTTCGAGGAGA+AGG 0.534103 3_4:-80975900 Msa0526840:intron
GTATAAGATGGCAGCAAGCA+AGG 0.537412 3_4:+80975633 None:intergenic
AAGATGGCAGCAAGCAAGGA+TGG 0.545895 3_4:+80975637 None:intergenic
TCGAGTTGCAAAGGATATCA+GGG 0.552456 3_4:-80974897 Msa0526840:CDS
CTATAACTGGAAAGAATGAG+AGG 0.590449 3_4:-80974846 Msa0526840:exon
TGATATCCTTTGCAACTCGA+AGG 0.591269 3_4:+80974900 None:intergenic
TGATGACCTTCGAGTTGCAA+AGG 0.605710 3_4:-80974906 Msa0526840:CDS
AGACATAATTGATACCATAG+AGG 0.607702 3_4:+80974767 None:intergenic
AAGGATGGAAATAATACAAG+TGG 0.612165 3_4:+80975652 None:intergenic
ACAAACAATATGATATACAA+AGG 0.628535 3_4:+80974631 None:intergenic
CGAGTTGCAAAGGATATCAG+GGG 0.685935 3_4:-80974896 Msa0526840:CDS
CAACTCGAAGGTCATCATCG+AGG 0.731436 3_4:+80974912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTGATAAAAAAAAAAAA+GGG + chr3_4:80975324-80975343 None:intergenic 10.0%
!! ACAATTGATAAAAAAAAAAA+AGG + chr3_4:80975325-80975344 None:intergenic 10.0%
!! CAATTGATAAAAAAAAAAAA+GGG + chr3_4:80975324-80975343 None:intergenic 10.0%
!! ACAATTGATAAAAAAAAAAA+AGG + chr3_4:80975325-80975344 None:intergenic 10.0%
!!! TGCAAAATATTAGATTTTAT+TGG - chr3_4:80974730-80974749 Msa0526840:three_prime_UTR 15.0%
!! TACAATTTATTAATAACCAA+AGG + chr3_4:80974801-80974820 None:intergenic 15.0%
!! TTTGGTTATTAATAAATTGT+AGG - chr3_4:80974800-80974819 Msa0526840:three_prime_UTR 15.0%
!! TTGGTTATTAATAAATTGTA+GGG - chr3_4:80974801-80974820 Msa0526840:three_prime_UTR 15.0%
!!! TGCAAAATATTAGATTTTAT+TGG - chr3_4:80974730-80974749 Msa0526840:three_prime_UTR 15.0%
!! TACAATTTATTAATAACCAA+AGG + chr3_4:80974801-80974820 None:intergenic 15.0%
!! TTTGGTTATTAATAAATTGT+AGG - chr3_4:80974800-80974819 Msa0526840:three_prime_UTR 15.0%
!! TTGGTTATTAATAAATTGTA+GGG - chr3_4:80974801-80974820 Msa0526840:three_prime_UTR 15.0%
!!! ATTTTTCAAAGATTACTTTG+AGG + chr3_4:80974885-80974904 None:intergenic 20.0%
!! TTACAATAATATACTTGAAG+AGG - chr3_4:80975194-80975213 Msa0526840:intron 20.0%
!! ACAAACAATATGATATACAA+AGG + chr3_4:80975863-80975882 None:intergenic 20.0%
!!! ATTTTTCAAAGATTACTTTG+AGG + chr3_4:80974885-80974904 None:intergenic 20.0%
!! TTACAATAATATACTTGAAG+AGG - chr3_4:80975194-80975213 Msa0526840:intron 20.0%
!! ACAAACAATATGATATACAA+AGG + chr3_4:80975863-80975882 None:intergenic 20.0%
!!! TAGATTTTATTGGTTTTAGC+CGG - chr3_4:80974740-80974759 Msa0526840:three_prime_UTR 25.0%
!!! CTCTTATTTATCTTTTCCTT+TGG - chr3_4:80974782-80974801 Msa0526840:three_prime_UTR 25.0%
! ATAGAGAAACATCTTTATTG+AGG + chr3_4:80975231-80975250 None:intergenic 25.0%
! ATTTATGATCGTAAAACTAC+TGG + chr3_4:80975390-80975409 None:intergenic 25.0%
!! ACATTTTGCTAAAACAATCA+AGG + chr3_4:80975466-80975485 None:intergenic 25.0%
! CATTAAAGAAGACAAACAAA+TGG + chr3_4:80975685-80975704 None:intergenic 25.0%
!!! TAGATTTTATTGGTTTTAGC+CGG - chr3_4:80974740-80974759 Msa0526840:three_prime_UTR 25.0%
!!! CTCTTATTTATCTTTTCCTT+TGG - chr3_4:80974782-80974801 Msa0526840:three_prime_UTR 25.0%
! ATAGAGAAACATCTTTATTG+AGG + chr3_4:80975231-80975250 None:intergenic 25.0%
! ATTTATGATCGTAAAACTAC+TGG + chr3_4:80975390-80975409 None:intergenic 25.0%
!! ACATTTTGCTAAAACAATCA+AGG + chr3_4:80975466-80975485 None:intergenic 25.0%
! CATTAAAGAAGACAAACAAA+TGG + chr3_4:80975685-80975704 None:intergenic 25.0%
AAGGATGGAAATAATACAAG+TGG + chr3_4:80974842-80974861 None:intergenic 30.0%
!! TTACTTTGAGGTGTATAAGA+TGG + chr3_4:80974873-80974892 None:intergenic 30.0%
ATGCTACTACAAATGATGAA+AGG + chr3_4:80975103-80975122 None:intergenic 30.0%
TTCCTCTATGTGCTATAAAT+TGG + chr3_4:80975162-80975181 None:intergenic 30.0%
!! TGATCTTTACTGATAATGGT+TGG + chr3_4:80975258-80975277 None:intergenic 30.0%
! GCATTGATCTTTACTGATAA+TGG + chr3_4:80975262-80975281 None:intergenic 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr3_4:80975316-80975335 None:intergenic 30.0%
!! GATCATAAATCTTAGCTTTG+TGG - chr3_4:80975400-80975419 Msa0526840:intron 30.0%
GGTGTAGAAAAAGGTAAAAT+GGG + chr3_4:80975445-80975464 None:intergenic 30.0%
AGGTGTAGAAAAAGGTAAAA+TGG + chr3_4:80975446-80975465 None:intergenic 30.0%
AACAATCAAGGTGTAGAAAA+AGG + chr3_4:80975454-80975473 None:intergenic 30.0%
!!! TAGTTGCATCTTGTTTTTGT+AGG - chr3_4:80975542-80975561 Msa0526840:intron 30.0%
AGACATAATTGATACCATAG+AGG + chr3_4:80975727-80975746 None:intergenic 30.0%
! ATCTAATCTGTATTTTGCAC+TGG + chr3_4:80975919-80975938 None:intergenic 30.0%
AAGGATGGAAATAATACAAG+TGG + chr3_4:80974842-80974861 None:intergenic 30.0%
!! TTACTTTGAGGTGTATAAGA+TGG + chr3_4:80974873-80974892 None:intergenic 30.0%
ATGCTACTACAAATGATGAA+AGG + chr3_4:80975103-80975122 None:intergenic 30.0%
TTCCTCTATGTGCTATAAAT+TGG + chr3_4:80975162-80975181 None:intergenic 30.0%
!! TGATCTTTACTGATAATGGT+TGG + chr3_4:80975258-80975277 None:intergenic 30.0%
! GCATTGATCTTTACTGATAA+TGG + chr3_4:80975262-80975281 None:intergenic 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr3_4:80975316-80975335 None:intergenic 30.0%
!! GATCATAAATCTTAGCTTTG+TGG - chr3_4:80975400-80975419 Msa0526840:intron 30.0%
GGTGTAGAAAAAGGTAAAAT+GGG + chr3_4:80975445-80975464 None:intergenic 30.0%
AGGTGTAGAAAAAGGTAAAA+TGG + chr3_4:80975446-80975465 None:intergenic 30.0%
AACAATCAAGGTGTAGAAAA+AGG + chr3_4:80975454-80975473 None:intergenic 30.0%
!!! TAGTTGCATCTTGTTTTTGT+AGG - chr3_4:80975542-80975561 Msa0526840:intron 30.0%
AGACATAATTGATACCATAG+AGG + chr3_4:80975727-80975746 None:intergenic 30.0%
! ATCTAATCTGTATTTTGCAC+TGG + chr3_4:80975919-80975938 None:intergenic 30.0%
AGGAGAAGGTTGAATTAGAA+GGG - chr3_4:80974605-80974624 Msa0526840:three_prime_UTR 35.0%
GTTGTTCGAATTTCTGTCTT+AGG - chr3_4:80974634-80974653 Msa0526840:three_prime_UTR 35.0%
AACTTGACAGAATCCTCTAA+TGG - chr3_4:80975051-80975070 Msa0526840:intron 35.0%
ACTACAAATGATGAAAGGAG+TGG + chr3_4:80975098-80975117 None:intergenic 35.0%
GACCAATTTATAGCACATAG+AGG - chr3_4:80975157-80975176 Msa0526840:intron 35.0%
ATCAGTAAAGATCAATGCAC+CGG - chr3_4:80975264-80975283 Msa0526840:intron 35.0%
AACATGAAATGTAGCTATGG+GGG + chr3_4:80975367-80975386 None:intergenic 35.0%
GAACATGAAATGTAGCTATG+GGG + chr3_4:80975368-80975387 None:intergenic 35.0%
GGAACATGAAATGTAGCTAT+GGG + chr3_4:80975369-80975388 None:intergenic 35.0%
TGGAACATGAAATGTAGCTA+TGG + chr3_4:80975370-80975389 None:intergenic 35.0%
CTCTCATTCTTTCCAGTTAT+AGG + chr3_4:80975647-80975666 None:intergenic 35.0%
CTATAACTGGAAAGAATGAG+AGG - chr3_4:80975645-80975664 Msa0526840:CDS 35.0%
!! CTTTGCACTTAACTAGTCTT+TGG - chr3_4:80975745-80975764 Msa0526840:intron 35.0%
! GTTGAAAGAGTACAAGATTC+AGG + chr3_4:80975965-80975984 None:intergenic 35.0%
AGGAGAAGGTTGAATTAGAA+GGG - chr3_4:80974605-80974624 Msa0526840:three_prime_UTR 35.0%
GTTGTTCGAATTTCTGTCTT+AGG - chr3_4:80974634-80974653 Msa0526840:three_prime_UTR 35.0%
AACTTGACAGAATCCTCTAA+TGG - chr3_4:80975051-80975070 Msa0526840:intron 35.0%
ACTACAAATGATGAAAGGAG+TGG + chr3_4:80975098-80975117 None:intergenic 35.0%
GACCAATTTATAGCACATAG+AGG - chr3_4:80975157-80975176 Msa0526840:intron 35.0%
ATCAGTAAAGATCAATGCAC+CGG - chr3_4:80975264-80975283 Msa0526840:intron 35.0%
AACATGAAATGTAGCTATGG+GGG + chr3_4:80975367-80975386 None:intergenic 35.0%
GAACATGAAATGTAGCTATG+GGG + chr3_4:80975368-80975387 None:intergenic 35.0%
GGAACATGAAATGTAGCTAT+GGG + chr3_4:80975369-80975388 None:intergenic 35.0%
TGGAACATGAAATGTAGCTA+TGG + chr3_4:80975370-80975389 None:intergenic 35.0%
CTCTCATTCTTTCCAGTTAT+AGG + chr3_4:80975647-80975666 None:intergenic 35.0%
CTATAACTGGAAAGAATGAG+AGG - chr3_4:80975645-80975664 Msa0526840:CDS 35.0%
!! CTTTGCACTTAACTAGTCTT+TGG - chr3_4:80975745-80975764 Msa0526840:intron 35.0%
! GTTGAAAGAGTACAAGATTC+AGG + chr3_4:80975965-80975984 None:intergenic 35.0%
GAGGAGAAGGTTGAATTAGA+AGG - chr3_4:80974604-80974623 Msa0526840:three_prime_UTR 40.0%
AGAAGGTTGAATTAGAAGGG+CGG - chr3_4:80974608-80974627 Msa0526840:three_prime_UTR 40.0%
! AGACTTCCATCCTTGTTTGA+AGG - chr3_4:80974701-80974720 Msa0526840:three_prime_UTR 40.0%
! GACTTCCATCCTTGTTTGAA+GGG - chr3_4:80974702-80974721 Msa0526840:three_prime_UTR 40.0%
AAAGACCCTTCAAACAAGGA+TGG + chr3_4:80974710-80974729 None:intergenic 40.0%
TGCAAAAGACCCTTCAAACA+AGG + chr3_4:80974714-80974733 None:intergenic 40.0%
TGTTCATCTGATGAGAGGAA+CGG + chr3_4:80974974-80974993 None:intergenic 40.0%
AGCAATGTTCATCTGATGAG+AGG + chr3_4:80974979-80974998 None:intergenic 40.0%
TGAACATTGCTCCAGTAACT+TGG - chr3_4:80974988-80975007 Msa0526840:intron 40.0%
GTTGGAAATGACCAAGTTAC+TGG + chr3_4:80975002-80975021 None:intergenic 40.0%
!!! AGTTTTCGATGGTGGAGTTT+CGG + chr3_4:80975035-80975054 None:intergenic 40.0%
! TTCTGTCAAGTTTTCGATGG+TGG + chr3_4:80975043-80975062 None:intergenic 40.0%
! GGATTCTGTCAAGTTTTCGA+TGG + chr3_4:80975046-80975065 None:intergenic 40.0%
GAAGAAGTTCACACCATTAG+AGG + chr3_4:80975067-80975086 None:intergenic 40.0%
ATGGTGTGAACTTCTTCCAA+CGG - chr3_4:80975070-80975089 Msa0526840:intron 40.0%
TCAGTAAAGATCAATGCACC+GGG - chr3_4:80975265-80975284 Msa0526840:intron 40.0%
TGATATCCTTTGCAACTCGA+AGG + chr3_4:80975594-80975613 None:intergenic 40.0%
!! TTCGAGTTGCAAAGGATATC+AGG - chr3_4:80975593-80975612 Msa0526840:intron 40.0%
! TCGAGTTGCAAAGGATATCA+GGG - chr3_4:80975594-80975613 Msa0526840:intron 40.0%
CTTTCCAGTTATAGGAAGCT+CGG + chr3_4:80975639-80975658 None:intergenic 40.0%
TTTCTACTCAACTGCCTCTA+TGG - chr3_4:80975710-80975729 Msa0526840:intron 40.0%
GAGGAGAAGGTTGAATTAGA+AGG - chr3_4:80974604-80974623 Msa0526840:three_prime_UTR 40.0%
AGAAGGTTGAATTAGAAGGG+CGG - chr3_4:80974608-80974627 Msa0526840:three_prime_UTR 40.0%
! AGACTTCCATCCTTGTTTGA+AGG - chr3_4:80974701-80974720 Msa0526840:three_prime_UTR 40.0%
! GACTTCCATCCTTGTTTGAA+GGG - chr3_4:80974702-80974721 Msa0526840:three_prime_UTR 40.0%
AAAGACCCTTCAAACAAGGA+TGG + chr3_4:80974710-80974729 None:intergenic 40.0%
TGCAAAAGACCCTTCAAACA+AGG + chr3_4:80974714-80974733 None:intergenic 40.0%
TGTTCATCTGATGAGAGGAA+CGG + chr3_4:80974974-80974993 None:intergenic 40.0%
AGCAATGTTCATCTGATGAG+AGG + chr3_4:80974979-80974998 None:intergenic 40.0%
TGAACATTGCTCCAGTAACT+TGG - chr3_4:80974988-80975007 Msa0526840:intron 40.0%
GTTGGAAATGACCAAGTTAC+TGG + chr3_4:80975002-80975021 None:intergenic 40.0%
!!! AGTTTTCGATGGTGGAGTTT+CGG + chr3_4:80975035-80975054 None:intergenic 40.0%
! TTCTGTCAAGTTTTCGATGG+TGG + chr3_4:80975043-80975062 None:intergenic 40.0%
! GGATTCTGTCAAGTTTTCGA+TGG + chr3_4:80975046-80975065 None:intergenic 40.0%
GAAGAAGTTCACACCATTAG+AGG + chr3_4:80975067-80975086 None:intergenic 40.0%
ATGGTGTGAACTTCTTCCAA+CGG - chr3_4:80975070-80975089 Msa0526840:intron 40.0%
TCAGTAAAGATCAATGCACC+GGG - chr3_4:80975265-80975284 Msa0526840:intron 40.0%
TGATATCCTTTGCAACTCGA+AGG + chr3_4:80975594-80975613 None:intergenic 40.0%
!! TTCGAGTTGCAAAGGATATC+AGG - chr3_4:80975593-80975612 Msa0526840:intron 40.0%
! TCGAGTTGCAAAGGATATCA+GGG - chr3_4:80975594-80975613 Msa0526840:intron 40.0%
CTTTCCAGTTATAGGAAGCT+CGG + chr3_4:80975639-80975658 None:intergenic 40.0%
TTTCTACTCAACTGCCTCTA+TGG - chr3_4:80975710-80975729 Msa0526840:intron 40.0%
GACGTTTAGGAACTGAAGTC+TGG + chr3_4:80974578-80974597 None:intergenic 45.0%
GTTCCTAAACGTCAAGTTCG+AGG - chr3_4:80974585-80974604 Msa0526840:three_prime_UTR 45.0%
TCTCCTCGAACTTGACGTTT+AGG + chr3_4:80974591-80974610 None:intergenic 45.0%
AAACGTCAAGTTCGAGGAGA+AGG - chr3_4:80974591-80974610 Msa0526840:three_prime_UTR 45.0%
GAAGGTTGAATTAGAAGGGC+GGG - chr3_4:80974609-80974628 Msa0526840:three_prime_UTR 45.0%
AAGGTTGAATTAGAAGGGCG+GGG - chr3_4:80974610-80974629 Msa0526840:three_prime_UTR 45.0%
!!! TTGGTTTTAGCCGGTGCAAA+AGG - chr3_4:80974749-80974768 Msa0526840:three_prime_UTR 45.0%
! AGAATGCTCTCCTTTTGCAC+CGG + chr3_4:80974762-80974781 None:intergenic 45.0%
GTATAAGATGGCAGCAAGCA+AGG + chr3_4:80974861-80974880 None:intergenic 45.0%
! GGAGTAGGGCGTAGTATTTT+GGG + chr3_4:80974921-80974940 None:intergenic 45.0%
! TGGAGTAGGGCGTAGTATTT+TGG + chr3_4:80974922-80974941 None:intergenic 45.0%
AATACTACGCCCTACTCCAT+TGG - chr3_4:80974923-80974942 Msa0526840:CDS 45.0%
AATTGGTCCTACCTGTCTGT+CGG + chr3_4:80975145-80975164 None:intergenic 45.0%
ATGTCTGAACAATGCTGCGT+TGG - chr3_4:80975482-80975501 Msa0526840:intron 45.0%
!! TGATGACCTTCGAGTTGCAA+AGG - chr3_4:80975585-80975604 Msa0526840:intron 45.0%
CGAGTTGCAAAGGATATCAG+GGG - chr3_4:80975595-80975614 Msa0526840:intron 45.0%
GACGTTTAGGAACTGAAGTC+TGG + chr3_4:80974578-80974597 None:intergenic 45.0%
GTTCCTAAACGTCAAGTTCG+AGG - chr3_4:80974585-80974604 Msa0526840:three_prime_UTR 45.0%
TCTCCTCGAACTTGACGTTT+AGG + chr3_4:80974591-80974610 None:intergenic 45.0%
AAACGTCAAGTTCGAGGAGA+AGG - chr3_4:80974591-80974610 Msa0526840:three_prime_UTR 45.0%
GAAGGTTGAATTAGAAGGGC+GGG - chr3_4:80974609-80974628 Msa0526840:three_prime_UTR 45.0%
AAGGTTGAATTAGAAGGGCG+GGG - chr3_4:80974610-80974629 Msa0526840:three_prime_UTR 45.0%
!!! TTGGTTTTAGCCGGTGCAAA+AGG - chr3_4:80974749-80974768 Msa0526840:three_prime_UTR 45.0%
! AGAATGCTCTCCTTTTGCAC+CGG + chr3_4:80974762-80974781 None:intergenic 45.0%
GTATAAGATGGCAGCAAGCA+AGG + chr3_4:80974861-80974880 None:intergenic 45.0%
! GGAGTAGGGCGTAGTATTTT+GGG + chr3_4:80974921-80974940 None:intergenic 45.0%
! TGGAGTAGGGCGTAGTATTT+TGG + chr3_4:80974922-80974941 None:intergenic 45.0%
AATACTACGCCCTACTCCAT+TGG - chr3_4:80974923-80974942 Msa0526840:CDS 45.0%
AATTGGTCCTACCTGTCTGT+CGG + chr3_4:80975145-80975164 None:intergenic 45.0%
ATGTCTGAACAATGCTGCGT+TGG - chr3_4:80975482-80975501 Msa0526840:intron 45.0%
!! TGATGACCTTCGAGTTGCAA+AGG - chr3_4:80975585-80975604 Msa0526840:intron 45.0%
CGAGTTGCAAAGGATATCAG+GGG - chr3_4:80975595-80975614 Msa0526840:intron 45.0%
GTTGGCAGAACAGCTTCTAC+TGG + chr3_4:80974543-80974562 None:intergenic 50.0%
TGTTCTGCCAACTGAGCTTC+AGG - chr3_4:80974551-80974570 Msa0526840:three_prime_UTR 50.0%
AAGATGGCAGCAAGCAAGGA+TGG + chr3_4:80974857-80974876 None:intergenic 50.0%
!! GTAGGGCGTAGTATTTTGGG+AGG + chr3_4:80974918-80974937 None:intergenic 50.0%
GAGGCACAACCAATGGAGTA+GGG + chr3_4:80974935-80974954 None:intergenic 50.0%
AGGAACGGAGCAAAAGTGGT+CGG + chr3_4:80974959-80974978 None:intergenic 50.0%
TGAGAGGAACGGAGCAAAAG+TGG + chr3_4:80974963-80974982 None:intergenic 50.0%
AGTTTCGGTTGCTTGGCTGT+TGG + chr3_4:80975020-80975039 None:intergenic 50.0%
! ATGGTGGAGTTTCGGTTGCT+TGG + chr3_4:80975027-80975046 None:intergenic 50.0%
GATGAAAGGAGTGGATCCGT+TGG + chr3_4:80975089-80975108 None:intergenic 50.0%
ATTGGTCCTACCTGTCTGTC+GGG + chr3_4:80975144-80975163 None:intergenic 50.0%
AATGTAGCTATGGGGGAGAG+TGG + chr3_4:80975360-80975379 None:intergenic 50.0%
CAACTCGAAGGTCATCATCG+AGG + chr3_4:80975582-80975601 None:intergenic 50.0%
TCGACCGAGCTTCCTATAAC+TGG - chr3_4:80975632-80975651 Msa0526840:CDS 50.0%
GTTGGCAGAACAGCTTCTAC+TGG + chr3_4:80974543-80974562 None:intergenic 50.0%
TGTTCTGCCAACTGAGCTTC+AGG - chr3_4:80974551-80974570 Msa0526840:three_prime_UTR 50.0%
AAGATGGCAGCAAGCAAGGA+TGG + chr3_4:80974857-80974876 None:intergenic 50.0%
!! GTAGGGCGTAGTATTTTGGG+AGG + chr3_4:80974918-80974937 None:intergenic 50.0%
GAGGCACAACCAATGGAGTA+GGG + chr3_4:80974935-80974954 None:intergenic 50.0%
AGGAACGGAGCAAAAGTGGT+CGG + chr3_4:80974959-80974978 None:intergenic 50.0%
TGAGAGGAACGGAGCAAAAG+TGG + chr3_4:80974963-80974982 None:intergenic 50.0%
AGTTTCGGTTGCTTGGCTGT+TGG + chr3_4:80975020-80975039 None:intergenic 50.0%
! ATGGTGGAGTTTCGGTTGCT+TGG + chr3_4:80975027-80975046 None:intergenic 50.0%
GATGAAAGGAGTGGATCCGT+TGG + chr3_4:80975089-80975108 None:intergenic 50.0%
ATTGGTCCTACCTGTCTGTC+GGG + chr3_4:80975144-80975163 None:intergenic 50.0%
AATGTAGCTATGGGGGAGAG+TGG + chr3_4:80975360-80975379 None:intergenic 50.0%
CAACTCGAAGGTCATCATCG+AGG + chr3_4:80975582-80975601 None:intergenic 50.0%
TCGACCGAGCTTCCTATAAC+TGG - chr3_4:80975632-80975651 Msa0526840:CDS 50.0%
GTCTGGTCCTGAAGCTCAGT+TGG + chr3_4:80974561-80974580 None:intergenic 55.0%
! GGAGGCACAACCAATGGAGT+AGG + chr3_4:80974936-80974955 None:intergenic 55.0%
GAACGGAGCAAAAGTGGTCG+GGG + chr3_4:80974957-80974976 None:intergenic 55.0%
GGAACGGAGCAAAAGTGGTC+GGG + chr3_4:80974958-80974977 None:intergenic 55.0%
TCCAGTAGAACCCGACAGAC+AGG - chr3_4:80975131-80975150 Msa0526840:intron 55.0%
ACCTGTCTGTCGGGTTCTAC+TGG + chr3_4:80975135-80975154 None:intergenic 55.0%
GTAGAACCCGACAGACAGGT+AGG - chr3_4:80975135-80975154 Msa0526840:intron 55.0%
AATGCACCGGGTTGCGTATG+CGG - chr3_4:80975277-80975296 Msa0526840:intron 55.0%
TATGGGGGAGAGTGGCAAAG+GGG + chr3_4:80975352-80975371 None:intergenic 55.0%
CTATGGGGGAGAGTGGCAAA+GGG + chr3_4:80975353-80975372 None:intergenic 55.0%
GTCTGGTCCTGAAGCTCAGT+TGG + chr3_4:80974561-80974580 None:intergenic 55.0%
! GGAGGCACAACCAATGGAGT+AGG + chr3_4:80974936-80974955 None:intergenic 55.0%
GAACGGAGCAAAAGTGGTCG+GGG + chr3_4:80974957-80974976 None:intergenic 55.0%
GGAACGGAGCAAAAGTGGTC+GGG + chr3_4:80974958-80974977 None:intergenic 55.0%
TCCAGTAGAACCCGACAGAC+AGG - chr3_4:80975131-80975150 Msa0526840:intron 55.0%
ACCTGTCTGTCGGGTTCTAC+TGG + chr3_4:80975135-80975154 None:intergenic 55.0%
GTAGAACCCGACAGACAGGT+AGG - chr3_4:80975135-80975154 Msa0526840:intron 55.0%
AATGCACCGGGTTGCGTATG+CGG - chr3_4:80975277-80975296 Msa0526840:intron 55.0%
TATGGGGGAGAGTGGCAAAG+GGG + chr3_4:80975352-80975371 None:intergenic 55.0%
CTATGGGGGAGAGTGGCAAA+GGG + chr3_4:80975353-80975372 None:intergenic 55.0%
ATGCACCGGGTTGCGTATGC+GGG - chr3_4:80975278-80975297 Msa0526840:intron 60.0%
AAGCTCCCGCATACGCAACC+CGG + chr3_4:80975286-80975305 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_4:80975294-80975313 Msa0526840:intron 60.0%
GCTATGGGGGAGAGTGGCAA+AGG + chr3_4:80975354-80975373 None:intergenic 60.0%
ATGCACCGGGTTGCGTATGC+GGG - chr3_4:80975278-80975297 Msa0526840:intron 60.0%
AAGCTCCCGCATACGCAACC+CGG + chr3_4:80975286-80975305 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_4:80975294-80975313 Msa0526840:intron 60.0%
GCTATGGGGGAGAGTGGCAA+AGG + chr3_4:80975354-80975373 None:intergenic 60.0%
! GGTCGGGGAGGCACAACCAA+TGG + chr3_4:80974942-80974961 None:intergenic 65.0%
CGGAGCAAAAGTGGTCGGGG+AGG + chr3_4:80974954-80974973 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_4:80975295-80975314 Msa0526840:intron 65.0%
! GGTCGGGGAGGCACAACCAA+TGG + chr3_4:80974942-80974961 None:intergenic 65.0%
CGGAGCAAAAGTGGTCGGGG+AGG + chr3_4:80974954-80974973 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_4:80975295-80975314 Msa0526840:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 80974516 80975997 80974516 ID=Msa0526840;Name=Msa0526840
chr3_4 mRNA 80974516 80975997 80974516 ID=Msa0526840-mRNA-1;Parent=Msa0526840;Name=Msa0526840-mRNA-1;_AED=0.35;_eAED=0.43;_QI=0|0|0.33|0.66|1|1|3|334|87
chr3_4 exon 80974516 80974949 80974516 ID=Msa0526840-mRNA-1:exon:24344;Parent=Msa0526840-mRNA-1
chr3_4 exon 80975625 80975691 80975625 ID=Msa0526840-mRNA-1:exon:24343;Parent=Msa0526840-mRNA-1
chr3_4 exon 80975901 80975997 80975901 ID=Msa0526840-mRNA-1:exon:24342;Parent=Msa0526840-mRNA-1
chr3_4 CDS 80975901 80975997 80975901 ID=Msa0526840-mRNA-1:cds;Parent=Msa0526840-mRNA-1
chr3_4 CDS 80975625 80975691 80975625 ID=Msa0526840-mRNA-1:cds;Parent=Msa0526840-mRNA-1
chr3_4 CDS 80974850 80974949 80974850 ID=Msa0526840-mRNA-1:cds;Parent=Msa0526840-mRNA-1
chr3_4 three_prime_UTR 80974516 80974849 80974516 ID=Msa0526840-mRNA-1:three_prime_utr;Parent=Msa0526840-mRNA-1
Gene Sequence

>Msa0526840

ATGCACTATGCAGTAGAAAATCATCCAGTAGAAGCTGTTCTGCCAACTGAGCTTCAGGACCAGACTTCAGTTCCTAAACGTCAAGTTCGAGGAGAAGGGAAGAATAATTCTTTTCCACTTGTATTATTTCCATCCTTGCTTGCTGCCATCTTATACACCTCAAAGTTTGATACTGTATACCTCGATGATGACCTTCGAGTTGCAAAGGATATCAGGGGAGACTATTTAGTTGTCGACCGAGCTTCCTATAACTGGAAAGAATGA

Protein sequence

>Msa0526840

MHYAVENHPVEAVLPTELQDQTSVPKRQVRGEGKNNSFPLVLFPSLLAAILYTSKFDTVYLDDDLRVAKDIRGDYLVVDRASYNWKE*