AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449690 MtrunA17_Chr1g0193701 77.580 281 26 5 1 279 1 246 1.82e-146 411
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449690 AT4G01650.2 54.000 200 59 4 84 279 16 186 3.05e-66 206
Msa1449690 AT4G01650.1 54.000 200 59 4 84 279 93 263 2.85e-65 206
Msa1449690 AT4G01650.3 54.140 157 41 3 84 238 93 220 8.69e-50 164
Msa1449690 AT5G08720.1 34.118 170 71 5 106 275 97 225 1.75e-17 82.8

Find 76 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 tig0032664:-36230 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 tig0032664:-35972 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 tig0032664:+35977 Msa1449690:CDS
ATAATCTTTAATACGGATAA+TGG 0.263799 tig0032664:-36553 None:intergenic
TTCAGCTCTTTGAAGGAAAA+TGG 0.271309 tig0032664:+38020 Msa1449690:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 tig0032664:+36175 Msa1449690:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 tig0032664:+36205 Msa1449690:CDS
GGAGAGCAGAACTTGGCATT+TGG 0.347544 tig0032664:+37890 Msa1449690:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 tig0032664:+36131 Msa1449690:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 tig0032664:+37891 Msa1449690:CDS
AGAGAAGAAAAGGGTGGAAA+TGG 0.362769 tig0032664:-35852 None:intergenic
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 tig0032664:-35800 None:intergenic
TCACGAGGAACTGTGCTATA+AGG 0.392002 tig0032664:+36599 Msa1449690:CDS
CGAAGATGTGGTTGCCCGTT+GGG 0.403416 tig0032664:+38846 Msa1449690:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 tig0032664:-35965 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 tig0032664:-35964 None:intergenic
GTATTAAAGATTATGTGTAT+TGG 0.406020 tig0032664:+36562 Msa1449690:CDS
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 tig0032664:+36037 Msa1449690:CDS
TAATCTTTAATACGGATAAT+GGG 0.424466 tig0032664:-36552 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 tig0032664:-35954 None:intergenic
CTACCCTCTATCAGCCCAAC+GGG 0.445050 tig0032664:-38877 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 tig0032664:+37911 Msa1449690:CDS
CCAACGGGCAACCACATCTT+CGG 0.447460 tig0032664:-38862 None:intergenic
ATCAGTCAAGATATTCCAAA+TGG 0.452946 tig0032664:-36146 None:intergenic
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 tig0032664:-36229 None:intergenic
GTCGTGTTAATTTCACGAAC+CGG 0.472895 tig0032664:-38814 None:intergenic
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 tig0032664:+36038 Msa1449690:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 tig0032664:+37992 Msa1449690:CDS
TTAACCTGCATTATCAATTG+TGG 0.483192 tig0032664:+35684 Msa1449690:five_prime_UTR
CTTGACTGATTATGAAAGGT+TGG 0.487454 tig0032664:+36159 Msa1449690:CDS
ACGACACCGATGATGATTCT+GGG 0.489661 tig0032664:+35978 Msa1449690:CDS
ATAAGAGAAAGAGAATATAC+AGG 0.491599 tig0032664:+35738 Msa1449690:five_prime_UTR
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 tig0032664:-35878 None:intergenic
TTGCCCACAATTGATAATGC+AGG 0.500345 tig0032664:-35688 None:intergenic
AATACACATAATCTTTAATA+CGG 0.502762 tig0032664:-36560 None:intergenic
TAACCTGCATTATCAATTGT+GGG 0.503628 tig0032664:+35685 Msa1449690:five_prime_UTR
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 tig0032664:-35880 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 tig0032664:-35881 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 tig0032664:-35836 None:intergenic
CCGAAGATGTGGTTGCCCGT+TGG 0.516968 tig0032664:+38845 Msa1449690:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 tig0032664:+36027 Msa1449690:CDS
GAATTGGAGACTCTTCCATC+TGG 0.520472 tig0032664:+37956 Msa1449690:CDS
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 tig0032664:-35879 None:intergenic
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 tig0032664:+38778 Msa1449690:CDS
GTTGCCCGTTGGGCTGATAG+AGG 0.535819 tig0032664:+38856 Msa1449690:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 tig0032664:+37883 Msa1449690:intron
CCCTCTTCAACCATCACCAC+CGG 0.549271 tig0032664:+35826 Msa1449690:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 tig0032664:-35903 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 tig0032664:+37993 Msa1449690:CDS
GCCGGTGGTGATGGTTGAAG+AGG 0.565263 tig0032664:-35827 None:intergenic
ATTCACGCAGAATTGAGTCT+AGG 0.570895 tig0032664:+36098 Msa1449690:CDS
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 tig0032664:+36039 Msa1449690:CDS
AGGGAGTAGGAAAGTTTGCG+TGG 0.586983 tig0032664:-35807 None:intergenic
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 tig0032664:-35969 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 tig0032664:-35935 None:intergenic
ATGTCACGCTTCATACCAGA+TGG 0.591702 tig0032664:-37971 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 tig0032664:-35896 None:intergenic
TTGCCCGTTGGGCTGATAGA+GGG 0.601510 tig0032664:+38857 Msa1449690:CDS
ATATCTTGACTGATTATGAA+AGG 0.602548 tig0032664:+36155 Msa1449690:CDS
AAAAGGGTGGAAATGGAAGC+CGG 0.605384 tig0032664:-35845 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 tig0032664:-35902 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 tig0032664:+37994 Msa1449690:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 tig0032664:-36193 None:intergenic
TAAAATCCCAGAATCATCAT+CGG 0.626374 tig0032664:-35984 None:intergenic
CCGGTGGTGATGGTTGAAGA+GGG 0.627951 tig0032664:-35826 None:intergenic
TAACGAACATGACTTGGGTG+AGG 0.630441 tig0032664:-35897 None:intergenic
GTGATGGTTGAAGAGGGAGT+AGG 0.631455 tig0032664:-35820 None:intergenic
GACACAACACGGCTCTCACG+AGG 0.633811 tig0032664:+36584 Msa1449690:CDS
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 tig0032664:+38769 Msa1449690:CDS
TCTACCCTCTATCAGCCCAA+CGG 0.653017 tig0032664:-38878 None:intergenic
GGGGTGAGAGAAGAAAAGGG+TGG 0.670192 tig0032664:-35858 None:intergenic
TATGTGTATTGGACACAACA+CGG 0.687972 tig0032664:+36573 Msa1449690:CDS
TTGATGTTAAGCCGAAGATG+TGG 0.693995 tig0032664:+38834 Msa1449690:CDS
AACTTTGACTCAATCAACGT+AGG 0.709930 tig0032664:-35641 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 tig0032664:-35877 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.769057 tig0032664:-35842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACACATAATCTTTAATA+CGG - tig0032664:36563-36582 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG + tig0032664:36725-36744 Msa1449690:intron 15.0%
!! TTGTTTATATTGCAAATTTA+GGG - tig0032664:37003-37022 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG - tig0032664:37004-37023 None:intergenic 15.0%
!! AAATTTGCAATATAAACAAA+AGG + tig0032664:37004-37023 Msa1449690:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG + tig0032664:37116-37135 Msa1449690:intron 15.0%
!! ATAAGAAGAAAAAAAAACAT+AGG + tig0032664:37244-37263 Msa1449690:intron 15.0%
!!! ATTTTCTTGAAAAGAAAATT+TGG + tig0032664:37826-37845 Msa1449690:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG - tig0032664:38238-38257 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG + tig0032664:38355-38374 Msa1449690:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG - tig0032664:38422-38441 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG + tig0032664:38428-38447 Msa1449690:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG - tig0032664:36512-36531 None:intergenic 20.0%
!! TAATCTTTAATACGGATAAT+GGG - tig0032664:36555-36574 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG - tig0032664:36556-36575 None:intergenic 20.0%
!! GTATTAAAGATTATGTGTAT+TGG + tig0032664:36562-36581 Msa1449690:CDS 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG + tig0032664:36750-36769 Msa1449690:intron 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG + tig0032664:36846-36865 Msa1449690:intron 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG + tig0032664:36944-36963 Msa1449690:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG - tig0032664:37155-37174 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG + tig0032664:37609-37628 Msa1449690:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG + tig0032664:37630-37649 Msa1449690:intron 20.0%
!!! CATTGAATTTTTAAAGGTTA+AGG - tig0032664:37746-37765 None:intergenic 20.0%
!!! CTTAACCTTTAAAAATTCAA+TGG + tig0032664:37744-37763 Msa1449690:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG - tig0032664:38223-38242 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG + tig0032664:38395-38414 Msa1449690:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG - tig0032664:38637-38656 None:intergenic 20.0%
!!! TTATTACATTTTGAAACCAT+AGG + tig0032664:38681-38700 Msa1449690:intron 20.0%
! ATAAGAGAAAGAGAATATAC+AGG + tig0032664:35738-35757 Msa1449690:five_prime_UTR 25.0%
! ATATCTTGACTGATTATGAA+AGG + tig0032664:36155-36174 Msa1449690:CDS 25.0%
!! TTTTTGGATCAATTTACTGA+GGG - tig0032664:36206-36225 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+AGG + tig0032664:36354-36373 Msa1449690:intron 25.0%
! TATTGTATTAGTGTTGTGTA+GGG + tig0032664:36355-36374 Msa1449690:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG - tig0032664:36531-36550 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG + tig0032664:36754-36773 Msa1449690:intron 25.0%
! AGATATAAAAGTAGTAGGAA+GGG + tig0032664:36755-36774 Msa1449690:intron 25.0%
!! TTAGAACTATACAGTTTGTT+TGG - tig0032664:36843-36862 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG + tig0032664:36845-36864 Msa1449690:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG + tig0032664:37059-37078 Msa1449690:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG - tig0032664:37332-37351 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG + tig0032664:37414-37433 Msa1449690:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG + tig0032664:37479-37498 Msa1449690:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG - tig0032664:37720-37739 None:intergenic 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG + tig0032664:37940-37959 Msa1449690:CDS 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG + tig0032664:38175-38194 Msa1449690:intron 25.0%
! TGGTGAAAATAATGAAGAAT+TGG - tig0032664:38283-38302 None:intergenic 25.0%
! AAAAACAGGAGTTGAAAATT+AGG + tig0032664:38369-38388 Msa1449690:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG - tig0032664:38636-38655 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG - tig0032664:38638-38657 None:intergenic 25.0%
TTAACCTGCATTATCAATTG+TGG + tig0032664:35684-35703 Msa1449690:five_prime_UTR 30.0%
TAACCTGCATTATCAATTGT+GGG + tig0032664:35685-35704 Msa1449690:five_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG - tig0032664:35905-35924 None:intergenic 30.0%
TAAAATCCCAGAATCATCAT+CGG - tig0032664:35987-36006 None:intergenic 30.0%
!!! TGATGATTCTGGGATTTTAT+TGG + tig0032664:35988-36007 Msa1449690:CDS 30.0%
ATCAGTCAAGATATTCCAAA+TGG - tig0032664:36149-36168 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG - tig0032664:36207-36226 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG + tig0032664:36205-36224 Msa1449690:CDS 30.0%
TAGAGTAATTCCTACTTTCT+AGG + tig0032664:36518-36537 Msa1449690:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG + tig0032664:36756-36775 Msa1449690:intron 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG + tig0032664:36963-36982 Msa1449690:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG - tig0032664:36998-37017 None:intergenic 30.0%
! AACAAAAGGCTTATTGATTG+AGG + tig0032664:37018-37037 Msa1449690:intron 30.0%
! ACAAAAGGCTTATTGATTGA+GGG + tig0032664:37019-37038 Msa1449690:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG - tig0032664:37231-37250 None:intergenic 30.0%
TGCTTTAACAGTAACACTTT+AGG - tig0032664:37302-37321 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG + tig0032664:37303-37322 Msa1449690:intron 30.0%
ATGATTATATGCCATGAAGT+AGG - tig0032664:37368-37387 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG - tig0032664:37425-37444 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG + tig0032664:37478-37497 Msa1449690:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG - tig0032664:37735-37754 None:intergenic 30.0%
! CCTTTAAAAATTCAATGGCA+CGG + tig0032664:37749-37768 Msa1449690:intron 30.0%
! TTTTTCCGTGTTCGTAAATT+TGG + tig0032664:37795-37814 Msa1449690:intron 30.0%
TCAAACCAAATTTACGAACA+CGG - tig0032664:37803-37822 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG + tig0032664:37869-37888 Msa1449690:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG - tig0032664:37875-37894 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG + tig0032664:37911-37930 Msa1449690:CDS 30.0%
ATAGACTTCAAGATGATTGA+AGG + tig0032664:37992-38011 Msa1449690:CDS 30.0%
TAGACTTCAAGATGATTGAA+GGG + tig0032664:37993-38012 Msa1449690:CDS 30.0%
CAGAAGAATTCTAATAAGAG+GGG - tig0032664:38076-38095 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG - tig0032664:38077-38096 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG - tig0032664:38078-38097 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG + tig0032664:38156-38175 Msa1449690:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG + tig0032664:38467-38486 Msa1449690:intron 30.0%
!!! TAGCTTTTGACTTGACAAAA+AGG + tig0032664:38565-38584 Msa1449690:intron 30.0%
!! AAACTTGTTGAATACTCCTA+TGG - tig0032664:38700-38719 None:intergenic 30.0%
AACTTTGACTCAATCAACGT+AGG - tig0032664:35644-35663 None:intergenic 35.0%
GATGTTTAACGAACATGACT+TGG - tig0032664:35906-35925 None:intergenic 35.0%
CTTGACTGATTATGAAAGGT+TGG + tig0032664:36159-36178 Msa1449690:CDS 35.0%
TCTTGCAGGTATAATGCAAT+TGG + tig0032664:36245-36264 Msa1449690:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG + tig0032664:36246-36265 Msa1449690:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG + tig0032664:36247-36266 Msa1449690:intron 35.0%
ATATCAACATCGTTGAGCTA+GGG - tig0032664:36430-36449 None:intergenic 35.0%
AATATCAACATCGTTGAGCT+AGG - tig0032664:36431-36450 None:intergenic 35.0%
TAAGTTAGACACATTCACTC+AGG + tig0032664:36453-36472 Msa1449690:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG - tig0032664:36496-36515 None:intergenic 35.0%
TATGTGTATTGGACACAACA+CGG + tig0032664:36573-36592 Msa1449690:CDS 35.0%
GTTTAGTTGCATGCTTGATT+TGG + tig0032664:36629-36648 Msa1449690:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG - tig0032664:36794-36813 None:intergenic 35.0%
TCGACATAAAATGACCTTGT+TGG - tig0032664:36797-36816 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG - tig0032664:36990-37009 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG - tig0032664:37228-37247 None:intergenic 35.0%
ATAGGTCAACACGATTATGT+TGG + tig0032664:37262-37281 Msa1449690:intron 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG + tig0032664:37589-37608 Msa1449690:intron 35.0%
!! CCGTGCCATTGAATTTTTAA+AGG - tig0032664:37752-37771 None:intergenic 35.0%
AGACTTCAAGATGATTGAAG+GGG + tig0032664:37994-38013 Msa1449690:CDS 35.0%
! TTCAGCTCTTTGAAGGAAAA+TGG + tig0032664:38020-38039 Msa1449690:CDS 35.0%
! AGGAAAATGGTCTATTTTGC+AGG + tig0032664:38033-38052 Msa1449690:CDS 35.0%
! AAATGGTCTATTTTGCAGGT+AGG + tig0032664:38037-38056 Msa1449690:intron 35.0%
CCCTCTTATTAGAATTCTTC+TGG + tig0032664:38074-38093 Msa1449690:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG - tig0032664:38102-38121 None:intergenic 35.0%
! TAGAGAAGTGCATAAAACTC+TGG - tig0032664:38133-38152 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+CGG + tig0032664:38293-38312 Msa1449690:intron 35.0%
!! AGTTTTGTGTTTTCCAAGAC+CGG - tig0032664:38315-38334 None:intergenic 35.0%
TTAGAAACTAGGACCATGTT+TGG - tig0032664:38411-38430 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG + tig0032664:38450-38469 Msa1449690:intron 35.0%
AAATGGAGTGCATCTTATCT+TGG + tig0032664:38484-38503 Msa1449690:intron 35.0%
TGGAAAGTCTGCTATTATTC+AGG + tig0032664:38504-38523 Msa1449690:intron 35.0%
! TATTCAGGTTATTGACCAAG+TGG + tig0032664:38519-38538 Msa1449690:intron 35.0%
! ATTCAGGTTATTGACCAAGT+GGG + tig0032664:38520-38539 Msa1449690:intron 35.0%
ATCATAATCACAATCCCACT+TGG - tig0032664:38537-38556 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG - tig0032664:38632-38651 None:intergenic 35.0%
!! TTGCCCACAATTGATAATGC+AGG - tig0032664:35691-35710 None:intergenic 40.0%
AGAGAAGAAAAGGGTGGAAA+TGG - tig0032664:35855-35874 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG - tig0032664:35882-35901 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG - tig0032664:35883-35902 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG - tig0032664:35975-35994 None:intergenic 40.0%
!! TGGGATTTTATTGGTGACAG+AGG + tig0032664:35997-36016 Msa1449690:CDS 40.0%
AGTTGAAGATTCAGAGTCGT+TGG + tig0032664:36027-36046 Msa1449690:CDS 40.0%
ATTCACGCAGAATTGAGTCT+AGG + tig0032664:36098-36117 Msa1449690:CDS 40.0%
ACGCTTCACTTGATTCCATT+TGG + tig0032664:36131-36150 Msa1449690:CDS 40.0%
! GAGCAAAATTGGGACCTTTT+TGG - tig0032664:36222-36241 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG - tig0032664:36232-36251 None:intergenic 40.0%
TGCAGGTATAATGCAATTGG+GGG + tig0032664:36248-36267 Msa1449690:intron 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG + tig0032664:36638-36657 Msa1449690:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG - tig0032664:36822-36841 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG - tig0032664:36823-36842 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG - tig0032664:36877-36896 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG - tig0032664:37147-37166 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG + tig0032664:37354-37373 Msa1449690:intron 40.0%
AGTTATGTATGCATCAGTCG+TGG + tig0032664:37438-37457 Msa1449690:intron 40.0%
GTTATGTATGCATCAGTCGT+GGG + tig0032664:37439-37458 Msa1449690:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG - tig0032664:37490-37509 None:intergenic 40.0%
TCTTGGTGAATGAAATGTCC+AGG + tig0032664:37510-37529 Msa1449690:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG + tig0032664:37661-37680 Msa1449690:intron 40.0%
AGATGCACTCCATTTGTAGT+TGG - tig0032664:38479-38498 None:intergenic 40.0%
GTCGTGTTAATTTCACGAAC+CGG - tig0032664:38800-38819 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG + tig0032664:38834-38853 Msa1449690:CDS 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG - tig0032664:35803-35822 None:intergenic 45.0%
AAAAGGGTGGAAATGGAAGC+CGG - tig0032664:35848-35867 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG - tig0032664:35880-35899 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG - tig0032664:35881-35900 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG - tig0032664:35884-35903 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG - tig0032664:35899-35918 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG - tig0032664:35900-35919 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG - tig0032664:35938-35957 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG - tig0032664:35957-35976 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG - tig0032664:35972-35991 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG + tig0032664:35977-35996 Msa1449690:CDS 45.0%
ACGACACCGATGATGATTCT+GGG + tig0032664:35978-35997 Msa1449690:CDS 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG + tig0032664:36037-36056 Msa1449690:CDS 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG + tig0032664:36038-36057 Msa1449690:CDS 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG + tig0032664:36039-36058 Msa1449690:CDS 45.0%
! AGGTTGGCTGATTTCATTCC+TGG + tig0032664:36175-36194 Msa1449690:CDS 45.0%
AATTTACTGAGGGCAAGACC+AGG - tig0032664:36196-36215 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG - tig0032664:36233-36252 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG + tig0032664:36231-36250 Msa1449690:CDS 45.0%
TAAACGAAGTGGCAAGCACA+AGG - tig0032664:36485-36504 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG + tig0032664:36599-36618 Msa1449690:CDS 45.0%
! AATGACCTTGTTGGTGGATG+AGG - tig0032664:36788-36807 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG + tig0032664:36864-36883 Msa1449690:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG - tig0032664:36873-36892 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG + tig0032664:37128-37147 Msa1449690:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG - tig0032664:37222-37241 None:intergenic 45.0%
!! AACTGTGGGAGTACTGATCT+TGG + tig0032664:37493-37512 Msa1449690:intron 45.0%
TCCAGGCAATACACATCAGT+TGG + tig0032664:37527-37546 Msa1449690:intron 45.0%
ACCAACTGATGTGTATTGCC+TGG - tig0032664:37531-37550 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG - tig0032664:37677-37696 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG + tig0032664:37674-37693 Msa1449690:intron 45.0%
ACAGATTGGAGAGCAGAACT+TGG + tig0032664:37883-37902 Msa1449690:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG + tig0032664:37891-37910 Msa1449690:CDS 45.0%
GAATTGGAGACTCTTCCATC+TGG + tig0032664:37956-37975 Msa1449690:CDS 45.0%
ATGTCACGCTTCATACCAGA+TGG - tig0032664:37974-37993 None:intergenic 45.0%
! GGGGATTTTCAGCTCTTTGA+AGG + tig0032664:38013-38032 Msa1449690:CDS 45.0%
GCTAACTTCCTAGACAGTGA+TGG + tig0032664:38736-38755 Msa1449690:intron 45.0%
CTGCAAAACCATCACTGTCT+AGG - tig0032664:38747-38766 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG + tig0032664:38758-38777 Msa1449690:intron 45.0%
TTTCAGCGATGGAAGTTGTG+AGG + tig0032664:38769-38788 Msa1449690:CDS 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG - tig0032664:35810-35829 None:intergenic 50.0%
GTGATGGTTGAAGAGGGAGT+AGG - tig0032664:35823-35842 None:intergenic 50.0%
AGGGGGGTGAGAGAAGAAAA+GGG - tig0032664:35864-35883 None:intergenic 50.0%
AAGGGGGGTGAGAGAAGAAA+AGG - tig0032664:35865-35884 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG - tig0032664:35967-35986 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG - tig0032664:35968-35987 None:intergenic 50.0%
TTCCTCCTCATCCACCAACA+AGG + tig0032664:36780-36799 Msa1449690:intron 50.0%
GGCGTCTATTAGGGTAATGC+AGG - tig0032664:37179-37198 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG - tig0032664:37188-37207 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG - tig0032664:37189-37208 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG + tig0032664:37188-37207 Msa1449690:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG - tig0032664:37219-37238 None:intergenic 50.0%
AAAGCATAGGCGTCCATGAG+TGG + tig0032664:37316-37335 Msa1449690:intron 50.0%
ATGTATGCATCAGTCGTGGG+TGG + tig0032664:37442-37461 Msa1449690:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG + tig0032664:37890-37909 Msa1449690:CDS 50.0%
ACCATTTCCTATGCCGGTCT+TGG + tig0032664:38299-38318 Msa1449690:intron 50.0%
TCCAAGACCGGCATAGGAAA+TGG - tig0032664:38303-38322 None:intergenic 50.0%
! GTGTTTTCCAAGACCGGCAT+AGG - tig0032664:38309-38328 None:intergenic 50.0%
TGGAAGTTGTGAGGACTCTC+CGG + tig0032664:38778-38797 Msa1449690:CDS 50.0%
TCTACCCTCTATCAGCCCAA+CGG - tig0032664:38864-38883 None:intergenic 50.0%
!! CCGGTGGTGATGGTTGAAGA+GGG - tig0032664:35829-35848 None:intergenic 55.0%
CCCTCTTCAACCATCACCAC+CGG + tig0032664:35826-35845 Msa1449690:CDS 55.0%
GAAATGGAAGCCGGTGGTGA+TGG - tig0032664:35839-35858 None:intergenic 55.0%
GGGGTGAGAGAAGAAAAGGG+TGG - tig0032664:35861-35880 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG - tig0032664:36785-36804 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG + tig0032664:37133-37152 Msa1449690:intron 55.0%
TATGCATCAGTCGTGGGTGG+TGG + tig0032664:37445-37464 Msa1449690:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG - tig0032664:38114-38133 None:intergenic 55.0%
CCAACGGGCAACCACATCTT+CGG - tig0032664:38848-38867 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+GGG + tig0032664:38846-38865 Msa1449690:CDS 55.0%
TTGCCCGTTGGGCTGATAGA+GGG + tig0032664:38857-38876 Msa1449690:CDS 55.0%
CTACCCTCTATCAGCCCAAC+GGG - tig0032664:38863-38882 None:intergenic 55.0%
!! GCCGGTGGTGATGGTTGAAG+AGG - tig0032664:35830-35849 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG - tig0032664:35845-35864 None:intergenic 60.0%
GACACAACACGGCTCTCACG+AGG + tig0032664:36584-36603 Msa1449690:CDS 60.0%
GTGGCTACGCCAGTGGTTGT+GGG - tig0032664:37200-37219 None:intergenic 60.0%
CCGAAGATGTGGTTGCCCGT+TGG + tig0032664:38845-38864 Msa1449690:CDS 60.0%
GTTGCCCGTTGGGCTGATAG+AGG + tig0032664:38856-38875 Msa1449690:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG - tig0032664:37201-37220 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG - tig0032664:37207-37226 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0032664 gene 35641 38889 35641 ID=Msa1449690;Name=Msa1449690
tig0032664 mRNA 35641 38889 35641 ID=Msa1449690-mRNA-1;Parent=Msa1449690;Name=Msa1449690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=147|0.33|0.5|0.75|1|1|4|0|279
tig0032664 exon 35641 36252 35641 ID=Msa1449690-mRNA-1:exon:17035;Parent=Msa1449690-mRNA-1
tig0032664 exon 36540 36620 36540 ID=Msa1449690-mRNA-1:exon:17036;Parent=Msa1449690-mRNA-1
tig0032664 exon 37887 38054 37887 ID=Msa1449690-mRNA-1:exon:17037;Parent=Msa1449690-mRNA-1
tig0032664 exon 38767 38889 38767 ID=Msa1449690-mRNA-1:exon:17038;Parent=Msa1449690-mRNA-1
tig0032664 five_prime_UTR 35641 35787 35641 ID=Msa1449690-mRNA-1:five_prime_utr;Parent=Msa1449690-mRNA-1
tig0032664 CDS 35788 36252 35788 ID=Msa1449690-mRNA-1:cds;Parent=Msa1449690-mRNA-1
tig0032664 CDS 36540 36620 36540 ID=Msa1449690-mRNA-1:cds;Parent=Msa1449690-mRNA-1
tig0032664 CDS 37887 38054 37887 ID=Msa1449690-mRNA-1:cds;Parent=Msa1449690-mRNA-1
tig0032664 CDS 38767 38889 38767 ID=Msa1449690-mRNA-1:cds;Parent=Msa1449690-mRNA-1
Gene Sequence

>Msa1449690

ATGCGCGCGATTCCAGTTTCCACGCAAACTTTCCTACTCCCTCTTCAACCATCACCACCGGCTTCCATTTCCACCCTTTTCTTCTCTCACCCCCCTTTTCATTTCACACCCTCACCCAAGTCATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGATTTTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGGTTGTATTATTGCCCATTATCCGTATTAAAGATTATGTGTATTGGACACAACACGGCTCTCACGAGGAACTGTGCTATAAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTTGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGTGAAATTAACACGACACTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTGGGCTGATAGAGGGTAGACTTTGC

Protein sequence

>Msa1449690

MRAIPVSTQTFLLPLQPSPPASISTLFFSHPPFHFTPSPKSCSLNINFTPSLYRASKHNPTTLNDTDDDSGILLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQVVLLPIIRIKDYVYWTQHGSHEELCYKIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVGLIEGRLC