Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1444660 | sp|Q6L4D2|PM19L_ORYSJ | 43.333 | 150 | 71 | 3 | 2 | 150 | 6 | 142 | 1.54e-26 | 101 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1444660 | G7KPB9 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 5.53e-107 | 311 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0009530 | Msa1444660 | -0.807365 | 5.237512e-50 | -8.615850e-47 |
Msa0011060 | Msa1444660 | -0.809898 | 1.507110e-50 | -8.615850e-47 |
Msa0011100 | Msa1444660 | -0.829865 | 4.051682e-55 | -8.615850e-47 |
Msa0030760 | Msa1444660 | -0.845103 | 5.002448e-59 | -8.615850e-47 |
Msa0036560 | Msa1444660 | -0.840383 | 8.986819e-58 | -8.615850e-47 |
Msa0042500 | Msa1444660 | -0.822119 | 2.808331e-53 | -8.615850e-47 |
Msa0047560 | Msa1444660 | -0.807846 | 4.140604e-50 | -8.615850e-47 |
Msa0050530 | Msa1444660 | 0.805045 | 1.613069e-49 | -8.615850e-47 |
Msa0053260 | Msa1444660 | -0.814449 | 1.532220e-51 | -8.615850e-47 |
Msa0056230 | Msa1444660 | -0.802288 | 6.023296e-49 | -8.615850e-47 |
Msa0064240 | Msa1444660 | -0.801307 | 9.577185e-49 | -8.615850e-47 |
Msa0078160 | Msa1444660 | -0.826562 | 2.534596e-54 | -8.615850e-47 |
Msa0078170 | Msa1444660 | -0.820466 | 6.757478e-53 | -8.615850e-47 |
Msa0079570 | Msa1444660 | -0.826493 | 2.632637e-54 | -8.615850e-47 |
Msa0081700 | Msa1444660 | -0.809012 | 2.335241e-50 | -8.615850e-47 |
Msa0089470 | Msa1444660 | -0.801400 | 9.165379e-49 | -8.615850e-47 |
Msa0094900 | Msa1444660 | -0.822827 | 1.923252e-53 | -8.615850e-47 |
Msa0098750 | Msa1444660 | -0.810019 | 1.419554e-50 | -8.615850e-47 |
Msa0099090 | Msa1444660 | -0.828074 | 1.100184e-54 | -8.615850e-47 |
Msa1348860 | Msa1444660 | -0.801361 | 9.335171e-49 | -8.615850e-47 |
Msa1350580 | Msa1444660 | -0.815688 | 8.131655e-52 | -8.615850e-47 |
Msa1352600 | Msa1444660 | -0.803455 | 3.457823e-49 | -8.615850e-47 |
Msa1352630 | Msa1444660 | -0.801194 | 1.010349e-48 | -8.615850e-47 |
Msa1365130 | Msa1444660 | -0.823194 | 1.579714e-53 | -8.615850e-47 |
Msa1367900 | Msa1444660 | -0.818316 | 2.089463e-52 | -8.615850e-47 |
Msa1371270 | Msa1444660 | 0.842535 | 2.436742e-58 | -8.615850e-47 |
Msa1371540 | Msa1444660 | -0.812894 | 3.369727e-51 | -8.615850e-47 |
Msa1376010 | Msa1444660 | -0.802856 | 4.599236e-49 | -8.615850e-47 |
Msa1379270 | Msa1444660 | -0.826679 | 2.376018e-54 | -8.615850e-47 |
Msa1381300 | Msa1444660 | -0.815267 | 1.009149e-51 | -8.615850e-47 |
Msa1382100 | Msa1444660 | -0.818339 | 2.064392e-52 | -8.615850e-47 |
Msa1384410 | Msa1444660 | -0.809296 | 2.030081e-50 | -8.615850e-47 |
Msa1387100 | Msa1444660 | -0.848300 | 6.692033e-60 | -8.615850e-47 |
Msa1392570 | Msa1444660 | -0.815470 | 9.095488e-52 | -8.615850e-47 |
Msa1395700 | Msa1444660 | -0.802401 | 5.709361e-49 | -8.615850e-47 |
Msa1398150 | Msa1444660 | -0.800851 | 1.187053e-48 | -8.615850e-47 |
Msa1418840 | Msa1444660 | -0.806036 | 9.997714e-50 | -8.615850e-47 |
Msa1422160 | Msa1444660 | -0.809685 | 1.674630e-50 | -8.615850e-47 |
Msa1427600 | Msa1444660 | -0.809378 | 1.949083e-50 | -8.615850e-47 |
Msa1430250 | Msa1444660 | 0.823523 | 1.323483e-53 | -8.615850e-47 |
Msa1430460 | Msa1444660 | -0.810216 | 1.286814e-50 | -8.615850e-47 |
Msa1430630 | Msa1444660 | -0.811722 | 6.073093e-51 | -8.615850e-47 |
Msa1436660 | Msa1444660 | -0.801815 | 7.536516e-49 | -8.615850e-47 |
Msa1444660 | Msa1452800 | -0.805895 | 1.070169e-49 | -8.615850e-47 |
Msa1444660 | Msa1462210 | -0.810919 | 9.071885e-51 | -8.615850e-47 |
Msa1444660 | Msa1466530 | 0.803660 | 3.136093e-49 | -8.615850e-47 |
Msa0603600 | Msa1444660 | -0.822496 | 2.296481e-53 | -8.615850e-47 |
Msa0612880 | Msa1444660 | -0.830157 | 3.439274e-55 | -8.615850e-47 |
Msa0625900 | Msa1444660 | -0.824383 | 8.313645e-54 | -8.615850e-47 |
Msa0638300 | Msa1444660 | -0.802567 | 5.277966e-49 | -8.615850e-47 |
Msa0644890 | Msa1444660 | -0.803338 | 3.656325e-49 | -8.615850e-47 |
Msa0646030 | Msa1444660 | -0.801360 | 9.342494e-49 | -8.615850e-47 |
Msa0654500 | Msa1444660 | -0.805163 | 1.523925e-49 | -8.615850e-47 |
Msa0654560 | Msa1444660 | -0.804911 | 1.720899e-49 | -8.615850e-47 |
Msa0662230 | Msa1444660 | -0.824591 | 7.427449e-54 | -8.615850e-47 |
Msa0663580 | Msa1444660 | -0.802855 | 4.601783e-49 | -8.615850e-47 |
Msa0663690 | Msa1444660 | -0.821991 | 3.007021e-53 | -8.615850e-47 |
Msa0667680 | Msa1444660 | -0.821790 | 3.348305e-53 | -8.615850e-47 |
Msa0667840 | Msa1444660 | -0.819948 | 8.881345e-53 | -8.615850e-47 |
Msa0673940 | Msa1444660 | 0.805462 | 1.319682e-49 | -8.615850e-47 |
Msa0674680 | Msa1444660 | -0.820193 | 7.806324e-53 | -8.615850e-47 |
Msa0677250 | Msa1444660 | -0.807074 | 6.036039e-50 | -8.615850e-47 |
Msa0681100 | Msa1444660 | -0.800250 | 1.574115e-48 | -8.615850e-47 |
Msa0681190 | Msa1444660 | -0.804432 | 2.165893e-49 | -8.615850e-47 |
Msa0685390 | Msa1444660 | -0.815201 | 1.043784e-51 | -8.615850e-47 |
Msa0702690 | Msa1444660 | -0.808055 | 3.738221e-50 | -8.615850e-47 |
Msa0704790 | Msa1444660 | -0.806967 | 6.359802e-50 | -8.615850e-47 |
Msa0706690 | Msa1444660 | 0.857884 | 1.204087e-62 | -8.615850e-47 |
Msa0714230 | Msa1444660 | -0.839272 | 1.749898e-57 | -8.615850e-47 |
Msa0730250 | Msa1444660 | -0.830063 | 3.626013e-55 | -8.615850e-47 |
Msa0733240 | Msa1444660 | -0.809081 | 2.256572e-50 | -8.615850e-47 |
Msa0738460 | Msa1444660 | -0.805876 | 1.080072e-49 | -8.615850e-47 |
Msa0742690 | Msa1444660 | -0.809061 | 2.279267e-50 | -8.615850e-47 |
Msa0755480 | Msa1444660 | -0.807624 | 4.615567e-50 | -8.615850e-47 |
Msa0756670 | Msa1444660 | -0.800458 | 1.427768e-48 | -8.615850e-47 |
Msa0758880 | Msa1444660 | -0.809255 | 2.071170e-50 | -8.615850e-47 |
Msa0768240 | Msa1444660 | -0.823379 | 1.429766e-53 | -8.615850e-47 |
Msa0770540 | Msa1444660 | -0.819813 | 9.538487e-53 | -8.615850e-47 |
Msa0795910 | Msa1444660 | -0.802138 | 6.466742e-49 | -8.615850e-47 |
Msa0801920 | Msa1444660 | -0.809490 | 1.844490e-50 | -8.615850e-47 |
Msa0802950 | Msa1444660 | -0.808727 | 2.686316e-50 | -8.615850e-47 |
Msa0817880 | Msa1444660 | -0.814965 | 1.177489e-51 | -8.615850e-47 |
Msa0827340 | Msa1444660 | -0.807511 | 4.877378e-50 | -8.615850e-47 |
Msa0827560 | Msa1444660 | -0.804463 | 2.134084e-49 | -8.615850e-47 |
Msa0828350 | Msa1444660 | 0.838236 | 3.241911e-57 | -8.615850e-47 |
Msa0829250 | Msa1444660 | -0.802504 | 5.437726e-49 | -8.615850e-47 |
Msa0831460 | Msa1444660 | -0.808995 | 2.354387e-50 | -8.615850e-47 |
Msa0838120 | Msa1444660 | -0.808250 | 3.395759e-50 | -8.615850e-47 |
Msa0123680 | Msa1444660 | -0.801317 | 9.530632e-49 | -8.615850e-47 |
Msa0127240 | Msa1444660 | -0.817844 | 2.670802e-52 | -8.615850e-47 |
Msa0127350 | Msa1444660 | -0.813821 | 2.108148e-51 | -8.615850e-47 |
Msa0130360 | Msa1444660 | 0.803976 | 2.695768e-49 | -8.615850e-47 |
Msa0132080 | Msa1444660 | -0.811875 | 5.624035e-51 | -8.615850e-47 |
Msa0138340 | Msa1444660 | -0.808458 | 3.066046e-50 | -8.615850e-47 |
Msa0139280 | Msa1444660 | -0.834782 | 2.455620e-56 | -8.615850e-47 |
Msa0147960 | Msa1444660 | -0.808077 | 3.697861e-50 | -8.615850e-47 |
Msa0164580 | Msa1444660 | -0.805908 | 1.063393e-49 | -8.615850e-47 |
Msa0169710 | Msa1444660 | 0.804082 | 2.562771e-49 | -8.615850e-47 |
Msa0172290 | Msa1444660 | -0.831883 | 1.296959e-55 | -8.615850e-47 |
Msa0186380 | Msa1444660 | -0.823212 | 1.564557e-53 | -8.615850e-47 |
Msa0194750 | Msa1444660 | -0.819802 | 9.590161e-53 | -8.615850e-47 |
Msa0197920 | Msa1444660 | 0.811952 | 5.412745e-51 | -8.615850e-47 |
Msa0208040 | Msa1444660 | -0.811483 | 6.846791e-51 | -8.615850e-47 |
Msa0209370 | Msa1444660 | -0.815678 | 8.173834e-52 | -8.615850e-47 |
Msa0209590 | Msa1444660 | -0.812203 | 4.772331e-51 | -8.615850e-47 |
Msa0211460 | Msa1444660 | 0.825014 | 5.905333e-54 | -8.615850e-47 |
Msa0223590 | Msa1444660 | 0.807294 | 5.422498e-50 | -8.615850e-47 |
Msa0225070 | Msa1444660 | -0.808012 | 3.816979e-50 | -8.615850e-47 |
Msa0227970 | Msa1444660 | -0.847242 | 1.308689e-59 | -8.615850e-47 |
Msa0229350 | Msa1444660 | -0.802227 | 6.200384e-49 | -8.615850e-47 |
Msa0232660 | Msa1444660 | -0.800554 | 1.365111e-48 | -8.615850e-47 |
Msa0236690 | Msa1444660 | -0.822991 | 1.761468e-53 | -8.615850e-47 |
Msa1225140 | Msa1444660 | -0.802084 | 6.635542e-49 | -8.615850e-47 |
Msa1228600 | Msa1444660 | -0.811040 | 8.542794e-51 | -8.615850e-47 |
Msa1240240 | Msa1444660 | -0.813787 | 2.145087e-51 | -8.615850e-47 |
Msa1251500 | Msa1444660 | 0.819686 | 1.019318e-52 | -8.615850e-47 |
Msa1253300 | Msa1444660 | 0.805463 | 1.319034e-49 | -8.615850e-47 |
Msa1266120 | Msa1444660 | -0.802929 | 4.443539e-49 | -8.615850e-47 |
Msa1279200 | Msa1444660 | -0.810640 | 1.042334e-50 | -8.615850e-47 |
Msa1286860 | Msa1444660 | -0.804394 | 2.206071e-49 | -8.615850e-47 |
Msa1286950 | Msa1444660 | -0.801124 | 1.044096e-48 | -8.615850e-47 |
Msa1290090 | Msa1444660 | -0.852335 | 4.940441e-61 | -8.615850e-47 |
Msa1291070 | Msa1444660 | -0.804531 | 2.066309e-49 | -8.615850e-47 |
Msa1292140 | Msa1444660 | 0.814551 | 1.454113e-51 | -8.615850e-47 |
Msa1295210 | Msa1444660 | -0.811226 | 7.782605e-51 | -8.615850e-47 |
Msa1298480 | Msa1444660 | -0.802392 | 5.735208e-49 | -8.615850e-47 |
Msa1301610 | Msa1444660 | -0.809851 | 1.542299e-50 | -8.615850e-47 |
Msa1320660 | Msa1444660 | -0.819070 | 1.408269e-52 | -8.615850e-47 |
Msa1321010 | Msa1444660 | 0.800585 | 1.345111e-48 | -8.615850e-47 |
Msa1323260 | Msa1444660 | -0.807930 | 3.974304e-50 | -8.615850e-47 |
Msa1328680 | Msa1444660 | -0.805895 | 1.070374e-49 | -8.615850e-47 |
Msa1343450 | Msa1444660 | -0.801473 | 8.858074e-49 | -8.615850e-47 |
Msa1343460 | Msa1444660 | 0.847061 | 1.466984e-59 | -8.615850e-47 |
Msa0370350 | Msa1444660 | -0.808852 | 2.526867e-50 | -8.615850e-47 |
Msa0372100 | Msa1444660 | 0.843980 | 1.003342e-58 | -8.615850e-47 |
Msa0375570 | Msa1444660 | -0.808861 | 2.515265e-50 | -8.615850e-47 |
Msa0382060 | Msa1444660 | -0.809984 | 1.443863e-50 | -8.615850e-47 |
Msa0385870 | Msa1444660 | -0.816222 | 6.181280e-52 | -8.615850e-47 |
Msa0389890 | Msa1444660 | -0.803504 | 3.377142e-49 | -8.615850e-47 |
Msa0416210 | Msa1444660 | 0.803129 | 4.039951e-49 | -8.615850e-47 |
Msa0417850 | Msa1444660 | -0.805834 | 1.102176e-49 | -8.615850e-47 |
Msa0424220 | Msa1444660 | -0.807042 | 6.132252e-50 | -8.615850e-47 |
Msa0427260 | Msa1444660 | -0.805881 | 1.077488e-49 | -8.615850e-47 |
Msa0431560 | Msa1444660 | -0.801512 | 8.695239e-49 | -8.615850e-47 |
Msa0450890 | Msa1444660 | -0.818480 | 1.917974e-52 | -8.615850e-47 |
Msa0467250 | Msa1444660 | 0.814389 | 1.579614e-51 | -8.615850e-47 |
Msa0471130 | Msa1444660 | -0.825889 | 3.663991e-54 | -8.615850e-47 |
Msa0475690 | Msa1444660 | -0.817290 | 3.560505e-52 | -8.615850e-47 |
Msa0476570 | Msa1444660 | -0.803152 | 3.995526e-49 | -8.615850e-47 |
Msa0987670 | Msa1444660 | 0.807204 | 5.667125e-50 | -8.615850e-47 |
Msa1039150 | Msa1444660 | -0.812404 | 4.312180e-51 | -8.615850e-47 |
Msa1057940 | Msa1444660 | -0.813536 | 2.435504e-51 | -8.615850e-47 |
Msa1078590 | Msa1444660 | -0.812613 | 3.881087e-51 | -8.615850e-47 |
Msa1078760 | Msa1444660 | -0.816585 | 5.127428e-52 | -8.615850e-47 |
Msa1078770 | Msa1444660 | -0.801844 | 7.433382e-49 | -8.615850e-47 |
Msa1083660 | Msa1444660 | -0.807323 | 5.345610e-50 | -8.615850e-47 |
Msa1093190 | Msa1444660 | -0.840659 | 7.608705e-58 | -8.615850e-47 |
Msa0264890 | Msa1444660 | 0.834265 | 3.312626e-56 | -8.615850e-47 |
Msa0266140 | Msa1444660 | -0.805610 | 1.228552e-49 | -8.615850e-47 |
Msa0267450 | Msa1444660 | -0.803336 | 3.660194e-49 | -8.615850e-47 |
Msa0267510 | Msa1444660 | -0.802397 | 5.719675e-49 | -8.615850e-47 |
Msa0269660 | Msa1444660 | -0.817192 | 3.745722e-52 | -8.615850e-47 |
Msa0270730 | Msa1444660 | -0.810441 | 1.151011e-50 | -8.615850e-47 |
Msa0277320 | Msa1444660 | 0.820190 | 7.816776e-53 | -8.615850e-47 |
Msa0278920 | Msa1444660 | 0.805416 | 1.349256e-49 | -8.615850e-47 |
Msa0279090 | Msa1444660 | -0.801087 | 1.062468e-48 | -8.615850e-47 |
Msa0304060 | Msa1444660 | -0.809323 | 2.002301e-50 | -8.615850e-47 |
Msa0304350 | Msa1444660 | -0.816236 | 6.136162e-52 | -8.615850e-47 |
Msa0305910 | Msa1444660 | -0.817790 | 2.746291e-52 | -8.615850e-47 |
Msa0309490 | Msa1444660 | -0.804519 | 2.077414e-49 | -8.615850e-47 |
Msa0336520 | Msa1444660 | 0.800840 | 1.193098e-48 | -8.615850e-47 |
Msa0340270 | Msa1444660 | 0.822100 | 2.837914e-53 | -8.615850e-47 |
Msa0340830 | Msa1444660 | -0.822325 | 2.516184e-53 | -8.615850e-47 |
Msa0340870 | Msa1444660 | -0.808454 | 3.072174e-50 | -8.615850e-47 |
Msa1116950 | Msa1444660 | -0.814001 | 1.923980e-51 | -8.615850e-47 |
Msa1132880 | Msa1444660 | -0.803189 | 3.926146e-49 | -8.615850e-47 |
Msa1136770 | Msa1444660 | -0.819314 | 1.239428e-52 | -8.615850e-47 |
Msa1136970 | Msa1444660 | -0.839998 | 1.133099e-57 | -8.615850e-47 |
Msa1143860 | Msa1444660 | -0.804400 | 2.200100e-49 | -8.615850e-47 |
Msa1169590 | Msa1444660 | -0.807432 | 5.068381e-50 | -8.615850e-47 |
Msa1169600 | Msa1444660 | -0.804191 | 2.432282e-49 | -8.615850e-47 |
Msa1186260 | Msa1444660 | 0.801408 | 9.133621e-49 | -8.615850e-47 |
Msa1191960 | Msa1444660 | -0.817928 | 2.556412e-52 | -8.615850e-47 |
Msa1194480 | Msa1444660 | -0.854597 | 1.107002e-61 | -8.615850e-47 |
Msa1197820 | Msa1444660 | 0.804517 | 2.080119e-49 | -8.615850e-47 |
Msa1199540 | Msa1444660 | -0.803340 | 3.653558e-49 | -8.615850e-47 |
Msa1200360 | Msa1444660 | 0.810480 | 1.128729e-50 | -8.615850e-47 |
Msa1205270 | Msa1444660 | -0.800963 | 1.126333e-48 | -8.615850e-47 |
Msa1209990 | Msa1444660 | -0.803337 | 3.658428e-49 | -8.615850e-47 |
Msa1212210 | Msa1444660 | -0.802220 | 6.222022e-49 | -8.615850e-47 |
Msa0483090 | Msa1444660 | -0.816342 | 5.809428e-52 | -8.615850e-47 |
Msa0512930 | Msa1444660 | -0.812338 | 4.458818e-51 | -8.615850e-47 |
Msa0513580 | Msa1444660 | -0.834123 | 3.595628e-56 | -8.615850e-47 |
Msa0523400 | Msa1444660 | -0.823714 | 1.193864e-53 | -8.615850e-47 |
Msa0527210 | Msa1444660 | -0.804969 | 1.673244e-49 | -8.615850e-47 |
Msa0527560 | Msa1444660 | 0.822326 | 2.514695e-53 | -8.615850e-47 |
Msa0538050 | Msa1444660 | -0.831875 | 1.302305e-55 | -8.615850e-47 |
Msa0559640 | Msa1444660 | -0.807231 | 5.592649e-50 | -8.615850e-47 |
Msa0566090 | Msa1444660 | -0.814349 | 1.611630e-51 | -8.615850e-47 |
Msa0566930 | Msa1444660 | 0.802290 | 6.017532e-49 | -8.615850e-47 |
Msa0568300 | Msa1444660 | -0.804996 | 1.651764e-49 | -8.615850e-47 |
Msa0568460 | Msa1444660 | -0.817720 | 2.849011e-52 | -8.615850e-47 |
Msa0575950 | Msa1444660 | 0.816337 | 5.826338e-52 | -8.615850e-47 |
Msa0585720 | Msa1444660 | -0.812407 | 4.306682e-51 | -8.615850e-47 |
Msa0598470 | Msa1444660 | -0.834619 | 2.699821e-56 | -8.615850e-47 |
Msa0847140 | Msa1444660 | 0.805170 | 1.518744e-49 | -8.615850e-47 |
Msa0848670 | Msa1444660 | -0.813146 | 2.966578e-51 | -8.615850e-47 |
Msa0861400 | Msa1444660 | -0.805412 | 1.351943e-49 | -8.615850e-47 |
Msa0876030 | Msa1444660 | -0.820260 | 7.533109e-53 | -8.615850e-47 |
Msa0907170 | Msa1444660 | 0.804367 | 2.235344e-49 | -8.615850e-47 |
Msa0921340 | Msa1444660 | 0.940129 | 3.948606e-100 | -8.615850e-47 |
Msa0937160 | Msa1444660 | -0.810631 | 1.046985e-50 | -8.615850e-47 |
Msa0941150 | Msa1444660 | -0.826737 | 2.302015e-54 | -8.615850e-47 |
Msa0949550 | Msa1444660 | -0.815095 | 1.101911e-51 | -8.615850e-47 |
Msa0959850 | Msa1444660 | 0.922976 | 4.873237e-89 | -8.615850e-47 |
Msa0967900 | Msa1444660 | -0.812184 | 4.817455e-51 | -8.615850e-47 |
Msa0978980 | Msa1444660 | 0.809571 | 1.771789e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1444660 | MtrunA17_Chr6g0478031 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 1.06e-110 | 311 |
Msa1444660 | MtrunA17_Chr2g0303931 | 75.524 | 143 | 35 | 0 | 1 | 143 | 6 | 148 | 6.63e-71 | 210 |
Msa1444660 | MtrunA17_Chr4g0065951 | 45.985 | 137 | 74 | 0 | 16 | 152 | 21 | 157 | 2.97e-35 | 120 |
Msa1444660 | MtrunA17_Chr1g0199041 | 42.857 | 154 | 73 | 5 | 2 | 154 | 6 | 145 | 3.00e-27 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1444660 | AT5G46530.1 | 71.812 | 149 | 42 | 0 | 1 | 149 | 6 | 154 | 1.85e-76 | 225 |
Msa1444660 | AT1G29520.1 | 78.523 | 149 | 32 | 0 | 1 | 149 | 6 | 154 | 1.71e-75 | 222 |
Msa1444660 | AT5G18970.1 | 43.506 | 154 | 87 | 0 | 2 | 155 | 7 | 160 | 1.11e-37 | 127 |
Msa1444660 | AT1G04560.1 | 43.590 | 156 | 74 | 4 | 2 | 156 | 7 | 149 | 8.40e-31 | 110 |
Find 29 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTCCCATTGGGAAGAAAA+TGG | 0.238328 | tig0030776:-38258 | Msa1444660:intergenic |
TGCATGTATGTCATTGTTCT+AGG | 0.248721 | tig0030776:+37984 | Msa1444660:CDS |
CTCTACATAGTTGCAATTCA+TGG | 0.294119 | tig0030776:+39101 | Msa1444660:CDS |
GGTGCTGCATCGACAATTTC+AGG | 0.318250 | tig0030776:+38329 | Msa1444660:CDS |
TGCTGCTTCAATTGCTACTT+TGG | 0.334645 | tig0030776:+38394 | Msa1444660:CDS |
CCAATGGGAAATGCTTCAAC+TGG | 0.374176 | tig0030776:+38269 | Msa1444660:CDS |
CTTCAATTGCTACTTTGGCT+TGG | 0.384442 | tig0030776:+38399 | Msa1444660:CDS |
GACTCTTACACTGCTTGCCA+TGG | 0.388463 | tig0030776:+38421 | Msa1444660:CDS |
GTTACGATTTCTTTGTTAGC+TGG | 0.398205 | tig0030776:+38299 | Msa1444660:CDS |
TCTTTGTTAGCTGGAGTAGT+TGG | 0.415192 | tig0030776:+38308 | Msa1444660:CDS |
TTGTTCTAGGCATTGGTGCA+TGG | 0.424644 | tig0030776:+37997 | Msa1444660:CDS |
CAGTTGAAGCATTTCCCATT+GGG | 0.433142 | tig0030776:-38268 | Msa1444660:intergenic |
TGAGCTGGAAGATTTAATTC+CGG | 0.439380 | tig0030776:-38227 | Msa1444660:intergenic |
TGTTCTAGGCATTGGTGCAT+GGG | 0.449144 | tig0030776:+37998 | Msa1444660:CDS |
ACTCTTACACTGCTTGCCAT+GGG | 0.453490 | tig0030776:+38422 | Msa1444660:CDS |
ACAAAATACATAGTTCGGTT+AGG | 0.457892 | tig0030776:+37917 | None:intergenic |
TTTCCCATTGGGAAGAAAAT+GGG | 0.461124 | tig0030776:-38257 | Msa1444660:intergenic |
GAGTCAAACATATCTGTTCA+TGG | 0.465531 | tig0030776:+38351 | Msa1444660:CDS |
TCAAATTAGAAATGCACGTC+TGG | 0.465623 | tig0030776:+38948 | Msa1444660:CDS |
CCAGTTGAAGCATTTCCCAT+TGG | 0.492597 | tig0030776:-38269 | Msa1444660:intergenic |
GATAATTATGAAAGCCTCCA+TGG | 0.495765 | tig0030776:-39060 | Msa1444660:intergenic |
TATGTCATTGTTCTAGGCAT+TGG | 0.506725 | tig0030776:+37990 | Msa1444660:CDS |
GTCCATAGCAACACTTCTCT+TGG | 0.510981 | tig0030776:+37950 | Msa1444660:CDS |
CACCAAGAGAAGTGTTGCTA+TGG | 0.525202 | tig0030776:-37952 | Msa1444660:intergenic |
TTAACTTCTGCAGATTTGCA+TGG | 0.530112 | tig0030776:+38911 | Msa1444660:intron |
ATGAATAGAGCAATAGATCA+TGG | 0.550315 | tig0030776:+38023 | Msa1444660:CDS |
AGAGAAGTTGTGTAACTGAA+AGG | 0.568727 | tig0030776:-39082 | Msa1444660:intergenic |
GTAGCAATTGAAGCAGCAGA+TGG | 0.611432 | tig0030776:-38389 | Msa1444660:intergenic |
CTCTTACACTGCTTGCCATG+GGG | 0.615745 | tig0030776:+38423 | Msa1444660:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATTACTATTATTTAG+AGG | - | tig0030776:38489-38508 | Msa1444660:intergenic | 10.0% |
!! | AATAAAACTATAAAAATCAA+AGG | + | tig0030776:38622-38641 | Msa1444660:intron | 10.0% |
!! | CATATAATATATATATTTGA+CGG | + | tig0030776:39132-39151 | Msa1444660:CDS | 10.0% |
!!! | TTTTTATTACTATTATTTAG+AGG | - | tig0030776:38489-38508 | Msa1444660:intergenic | 10.0% |
!! | AATAAAACTATAAAAATCAA+AGG | + | tig0030776:38622-38641 | Msa1444660:intron | 10.0% |
!!! | GTTTTAATTGAAAACAAATT+TGG | - | tig0030776:38844-38863 | Msa1444660:intergenic | 15.0% |
!! | GAATCATTTAATAAATTTCT+TGG | + | tig0030776:38984-39003 | Msa1444660:intron | 15.0% |
!!! | GTTTTAATTGAAAACAAATT+TGG | - | tig0030776:38844-38863 | Msa1444660:intergenic | 15.0% |
!! | GAATCATTTAATAAATTTCT+TGG | + | tig0030776:38984-39003 | Msa1444660:intron | 15.0% |
!!! | TTCTGACATTCTAAAATATT+TGG | - | tig0030776:38091-38110 | Msa1444660:intergenic | 20.0% |
!!! | ATTTTGTTATGAAATTATGC+AGG | + | tig0030776:38203-38222 | Msa1444660:intron | 20.0% |
!! | ATTACTATTATTTAGAGGTA+TGG | - | tig0030776:38484-38503 | Msa1444660:intergenic | 20.0% |
!!! | TTCTGACATTCTAAAATATT+TGG | - | tig0030776:38091-38110 | Msa1444660:intergenic | 20.0% |
!!! | ATTTTGTTATGAAATTATGC+AGG | + | tig0030776:38203-38222 | Msa1444660:intron | 20.0% |
!! | ATTACTATTATTTAGAGGTA+TGG | - | tig0030776:38484-38503 | Msa1444660:intergenic | 20.0% |
!!! | ATAGATCATGGTTTTATCAT+AGG | + | tig0030776:38035-38054 | Msa1444660:CDS | 25.0% |
! | TTAGAATGTCAGAAAAACAA+TGG | + | tig0030776:38097-38116 | Msa1444660:intron | 25.0% |
!! | TTGATTTTATCCATTCCTAT+AGG | + | tig0030776:38553-38572 | Msa1444660:intron | 25.0% |
! | CAATGAATTTCGTAAAATCA+TGG | + | tig0030776:38757-38776 | Msa1444660:intron | 25.0% |
!! | TGTAACTTTTGTCAAAATCA+CGG | + | tig0030776:38810-38829 | Msa1444660:intron | 25.0% |
!!! | ATAGATCATGGTTTTATCAT+AGG | + | tig0030776:38035-38054 | Msa1444660:CDS | 25.0% |
! | TTAGAATGTCAGAAAAACAA+TGG | + | tig0030776:38097-38116 | Msa1444660:intron | 25.0% |
!! | TTGATTTTATCCATTCCTAT+AGG | + | tig0030776:38553-38572 | Msa1444660:intron | 25.0% |
! | CAATGAATTTCGTAAAATCA+TGG | + | tig0030776:38757-38776 | Msa1444660:intron | 25.0% |
!! | TGTAACTTTTGTCAAAATCA+CGG | + | tig0030776:38810-38829 | Msa1444660:intron | 25.0% |
ATGAATAGAGCAATAGATCA+TGG | + | tig0030776:38023-38042 | Msa1444660:CDS | 30.0% | |
ATTTGGCAAATGTGAAAGAT+AGG | - | tig0030776:38074-38093 | Msa1444660:intergenic | 30.0% | |
!!! | GTATGCTGAAGTTTTAATTC+CGG | - | tig0030776:38181-38200 | Msa1444660:intergenic | 30.0% |
TAAGTCTATCAATCACCTAT+AGG | - | tig0030776:38571-38590 | Msa1444660:intergenic | 30.0% | |
! | AAATCAAAGGAGCGTATTAA+AGG | + | tig0030776:38635-38654 | Msa1444660:intron | 30.0% |
! | AATCAAAGGAGCGTATTAAA+GGG | + | tig0030776:38636-38655 | Msa1444660:intron | 30.0% |
!!! | TCTATTTTTGCAGAAAACCA+TGG | + | tig0030776:39043-39062 | Msa1444660:intron | 30.0% |
ATGAATAGAGCAATAGATCA+TGG | + | tig0030776:38023-38042 | Msa1444660:CDS | 30.0% | |
ATTTGGCAAATGTGAAAGAT+AGG | - | tig0030776:38074-38093 | Msa1444660:intergenic | 30.0% | |
!!! | GTATGCTGAAGTTTTAATTC+CGG | - | tig0030776:38181-38200 | Msa1444660:intergenic | 30.0% |
TAAGTCTATCAATCACCTAT+AGG | - | tig0030776:38571-38590 | Msa1444660:intergenic | 30.0% | |
! | AAATCAAAGGAGCGTATTAA+AGG | + | tig0030776:38635-38654 | Msa1444660:intron | 30.0% |
! | AATCAAAGGAGCGTATTAAA+GGG | + | tig0030776:38636-38655 | Msa1444660:intron | 30.0% |
!!! | TCTATTTTTGCAGAAAACCA+TGG | + | tig0030776:39043-39062 | Msa1444660:intron | 30.0% |
TGCATGTATGTCATTGTTCT+AGG | + | tig0030776:37984-38003 | Msa1444660:CDS | 35.0% | |
! | TATGTCATTGTTCTAGGCAT+TGG | + | tig0030776:37990-38009 | Msa1444660:CDS | 35.0% |
GTTATGAAATTATGCAGGTC+CGG | + | tig0030776:38208-38227 | Msa1444660:intron | 35.0% | |
TGAGCTGGAAGATTTAATTC+CGG | - | tig0030776:38230-38249 | Msa1444660:intergenic | 35.0% | |
AAAATGGGTGAAAAATGAGC+TGG | - | tig0030776:38245-38264 | Msa1444660:intergenic | 35.0% | |
TTTCCCATTGGGAAGAAAAT+GGG | - | tig0030776:38260-38279 | Msa1444660:intergenic | 35.0% | |
ATTTCCCATTGGGAAGAAAA+TGG | - | tig0030776:38261-38280 | Msa1444660:intergenic | 35.0% | |
GTTACGATTTCTTTGTTAGC+TGG | + | tig0030776:38299-38318 | Msa1444660:CDS | 35.0% | |
GAGTCAAACATATCTGTTCA+TGG | + | tig0030776:38351-38370 | Msa1444660:CDS | 35.0% | |
AAAGAGAGAAATTTACCCCA+TGG | - | tig0030776:38441-38460 | Msa1444660:intergenic | 35.0% | |
CTATCAATCACCTATAGGAA+TGG | - | tig0030776:38566-38585 | Msa1444660:intergenic | 35.0% | |
! | TGCTCTTCTTTTATCTTACC+AGG | + | tig0030776:38718-38737 | Msa1444660:intron | 35.0% |
TTAACTTCTGCAGATTTGCA+TGG | + | tig0030776:38911-38930 | Msa1444660:intron | 35.0% | |
TCAAATTAGAAATGCACGTC+TGG | + | tig0030776:38948-38967 | Msa1444660:CDS | 35.0% | |
! | ATTTTTGCAGAAAACCATGG+AGG | + | tig0030776:39046-39065 | Msa1444660:intron | 35.0% |
GATAATTATGAAAGCCTCCA+TGG | - | tig0030776:39063-39082 | Msa1444660:intergenic | 35.0% | |
AGAGAAGTTGTGTAACTGAA+AGG | - | tig0030776:39085-39104 | Msa1444660:intergenic | 35.0% | |
CTCTACATAGTTGCAATTCA+TGG | + | tig0030776:39101-39120 | Msa1444660:CDS | 35.0% | |
TGCATGTATGTCATTGTTCT+AGG | + | tig0030776:37984-38003 | Msa1444660:CDS | 35.0% | |
! | TATGTCATTGTTCTAGGCAT+TGG | + | tig0030776:37990-38009 | Msa1444660:CDS | 35.0% |
GTTATGAAATTATGCAGGTC+CGG | + | tig0030776:38208-38227 | Msa1444660:intron | 35.0% | |
TGAGCTGGAAGATTTAATTC+CGG | - | tig0030776:38230-38249 | Msa1444660:intergenic | 35.0% | |
AAAATGGGTGAAAAATGAGC+TGG | - | tig0030776:38245-38264 | Msa1444660:intergenic | 35.0% | |
TTTCCCATTGGGAAGAAAAT+GGG | - | tig0030776:38260-38279 | Msa1444660:intergenic | 35.0% | |
ATTTCCCATTGGGAAGAAAA+TGG | - | tig0030776:38261-38280 | Msa1444660:intergenic | 35.0% | |
GTTACGATTTCTTTGTTAGC+TGG | + | tig0030776:38299-38318 | Msa1444660:CDS | 35.0% | |
GAGTCAAACATATCTGTTCA+TGG | + | tig0030776:38351-38370 | Msa1444660:CDS | 35.0% | |
AAAGAGAGAAATTTACCCCA+TGG | - | tig0030776:38441-38460 | Msa1444660:intergenic | 35.0% | |
CTATCAATCACCTATAGGAA+TGG | - | tig0030776:38566-38585 | Msa1444660:intergenic | 35.0% | |
! | TGCTCTTCTTTTATCTTACC+AGG | + | tig0030776:38718-38737 | Msa1444660:intron | 35.0% |
TTAACTTCTGCAGATTTGCA+TGG | + | tig0030776:38911-38930 | Msa1444660:intron | 35.0% | |
TCAAATTAGAAATGCACGTC+TGG | + | tig0030776:38948-38967 | Msa1444660:CDS | 35.0% | |
! | ATTTTTGCAGAAAACCATGG+AGG | + | tig0030776:39046-39065 | Msa1444660:intron | 35.0% |
GATAATTATGAAAGCCTCCA+TGG | - | tig0030776:39063-39082 | Msa1444660:intergenic | 35.0% | |
AGAGAAGTTGTGTAACTGAA+AGG | - | tig0030776:39085-39104 | Msa1444660:intergenic | 35.0% | |
CTCTACATAGTTGCAATTCA+TGG | + | tig0030776:39101-39120 | Msa1444660:CDS | 35.0% | |
AACGTGTGAGTTAGGTTTAC+CGG | + | tig0030776:38154-38173 | Msa1444660:intron | 40.0% | |
!!! | CTGAAGTTTTAATTCCGGTC+CGG | - | tig0030776:38176-38195 | Msa1444660:intergenic | 40.0% |
! | TTCACCCATTTTCTTCCCAA+TGG | + | tig0030776:38253-38272 | Msa1444660:CDS | 40.0% |
! | TCACCCATTTTCTTCCCAAT+GGG | + | tig0030776:38254-38273 | Msa1444660:CDS | 40.0% |
! | CAGTTGAAGCATTTCCCATT+GGG | - | tig0030776:38271-38290 | Msa1444660:intergenic | 40.0% |
TCTTTGTTAGCTGGAGTAGT+TGG | + | tig0030776:38308-38327 | Msa1444660:CDS | 40.0% | |
! | TGCTGCTTCAATTGCTACTT+TGG | + | tig0030776:38394-38413 | Msa1444660:CDS | 40.0% |
!! | CTTCAATTGCTACTTTGGCT+TGG | + | tig0030776:38399-38418 | Msa1444660:CDS | 40.0% |
TATCTTACCAGGTGCATGTT+TGG | + | tig0030776:38729-38748 | Msa1444660:intron | 40.0% | |
AACGTGTGAGTTAGGTTTAC+CGG | + | tig0030776:38154-38173 | Msa1444660:intron | 40.0% | |
!!! | CTGAAGTTTTAATTCCGGTC+CGG | - | tig0030776:38176-38195 | Msa1444660:intergenic | 40.0% |
! | TTCACCCATTTTCTTCCCAA+TGG | + | tig0030776:38253-38272 | Msa1444660:CDS | 40.0% |
! | TCACCCATTTTCTTCCCAAT+GGG | + | tig0030776:38254-38273 | Msa1444660:CDS | 40.0% |
! | CAGTTGAAGCATTTCCCATT+GGG | - | tig0030776:38271-38290 | Msa1444660:intergenic | 40.0% |
TCTTTGTTAGCTGGAGTAGT+TGG | + | tig0030776:38308-38327 | Msa1444660:CDS | 40.0% | |
! | TGCTGCTTCAATTGCTACTT+TGG | + | tig0030776:38394-38413 | Msa1444660:CDS | 40.0% |
!! | CTTCAATTGCTACTTTGGCT+TGG | + | tig0030776:38399-38418 | Msa1444660:CDS | 40.0% |
TATCTTACCAGGTGCATGTT+TGG | + | tig0030776:38729-38748 | Msa1444660:intron | 40.0% | |
GTCCATAGCAACACTTCTCT+TGG | + | tig0030776:37950-37969 | Msa1444660:CDS | 45.0% | |
!! | CACCAAGAGAAGTGTTGCTA+TGG | - | tig0030776:37955-37974 | Msa1444660:intergenic | 45.0% |
!! | TTGTTCTAGGCATTGGTGCA+TGG | + | tig0030776:37997-38016 | Msa1444660:CDS | 45.0% |
!! | TGTTCTAGGCATTGGTGCAT+GGG | + | tig0030776:37998-38017 | Msa1444660:CDS | 45.0% |
TGCGTAGTAACGTGTGAGTT+AGG | + | tig0030776:38146-38165 | Msa1444660:intron | 45.0% | |
! | CCAGTTGAAGCATTTCCCAT+TGG | - | tig0030776:38272-38291 | Msa1444660:intergenic | 45.0% |
CCAATGGGAAATGCTTCAAC+TGG | + | tig0030776:38269-38288 | Msa1444660:CDS | 45.0% | |
GTAGCAATTGAAGCAGCAGA+TGG | - | tig0030776:38392-38411 | Msa1444660:intergenic | 45.0% | |
ACTCTTACACTGCTTGCCAT+GGG | + | tig0030776:38422-38441 | Msa1444660:CDS | 45.0% | |
TGTCAATCCAAACATGCACC+TGG | - | tig0030776:38739-38758 | Msa1444660:intergenic | 45.0% | |
GTCCATAGCAACACTTCTCT+TGG | + | tig0030776:37950-37969 | Msa1444660:CDS | 45.0% | |
!! | CACCAAGAGAAGTGTTGCTA+TGG | - | tig0030776:37955-37974 | Msa1444660:intergenic | 45.0% |
!! | TTGTTCTAGGCATTGGTGCA+TGG | + | tig0030776:37997-38016 | Msa1444660:CDS | 45.0% |
!! | TGTTCTAGGCATTGGTGCAT+GGG | + | tig0030776:37998-38017 | Msa1444660:CDS | 45.0% |
TGCGTAGTAACGTGTGAGTT+AGG | + | tig0030776:38146-38165 | Msa1444660:intron | 45.0% | |
! | CCAGTTGAAGCATTTCCCAT+TGG | - | tig0030776:38272-38291 | Msa1444660:intergenic | 45.0% |
CCAATGGGAAATGCTTCAAC+TGG | + | tig0030776:38269-38288 | Msa1444660:CDS | 45.0% | |
GTAGCAATTGAAGCAGCAGA+TGG | - | tig0030776:38392-38411 | Msa1444660:intergenic | 45.0% | |
ACTCTTACACTGCTTGCCAT+GGG | + | tig0030776:38422-38441 | Msa1444660:CDS | 45.0% | |
TGTCAATCCAAACATGCACC+TGG | - | tig0030776:38739-38758 | Msa1444660:intergenic | 45.0% | |
GTGAGTTAGGTTTACCGGAC+CGG | + | tig0030776:38159-38178 | Msa1444660:intron | 50.0% | |
! | GGTGCTGCATCGACAATTTC+AGG | + | tig0030776:38329-38348 | Msa1444660:CDS | 50.0% |
GACTCTTACACTGCTTGCCA+TGG | + | tig0030776:38421-38440 | Msa1444660:CDS | 50.0% | |
CTCTTACACTGCTTGCCATG+GGG | + | tig0030776:38423-38442 | Msa1444660:CDS | 50.0% | |
GTGAGTTAGGTTTACCGGAC+CGG | + | tig0030776:38159-38178 | Msa1444660:intron | 50.0% | |
! | GGTGCTGCATCGACAATTTC+AGG | + | tig0030776:38329-38348 | Msa1444660:CDS | 50.0% |
GACTCTTACACTGCTTGCCA+TGG | + | tig0030776:38421-38440 | Msa1444660:CDS | 50.0% | |
CTCTTACACTGCTTGCCATG+GGG | + | tig0030776:38423-38442 | Msa1444660:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0030776 | gene | 37932 | 39151 | 37932 | ID=Msa1444660;Name=Msa1444660 |
tig0030776 | mRNA | 37932 | 39151 | 37932 | ID=Msa1444660-mRNA-1;Parent=Msa1444660;Name=Msa1444660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=13|1|0.75|1|1|1|4|0|157 |
tig0030776 | exon | 37932 | 38056 | 37932 | ID=Msa1444660-mRNA-1:exon:14597;Parent=Msa1444660-mRNA-1 |
tig0030776 | exon | 38225 | 38444 | 38225 | ID=Msa1444660-mRNA-1:exon:14598;Parent=Msa1444660-mRNA-1 |
tig0030776 | exon | 38924 | 38969 | 38924 | ID=Msa1444660-mRNA-1:exon:14599;Parent=Msa1444660-mRNA-1 |
tig0030776 | exon | 39056 | 39151 | 39056 | ID=Msa1444660-mRNA-1:exon:14600;Parent=Msa1444660-mRNA-1 |
tig0030776 | five_prime_UTR | 37932 | 37944 | 37932 | ID=Msa1444660-mRNA-1:five_prime_utr;Parent=Msa1444660-mRNA-1 |
tig0030776 | CDS | 37945 | 38056 | 37945 | ID=Msa1444660-mRNA-1:cds;Parent=Msa1444660-mRNA-1 |
tig0030776 | CDS | 38225 | 38444 | 38225 | ID=Msa1444660-mRNA-1:cds;Parent=Msa1444660-mRNA-1 |
tig0030776 | CDS | 38924 | 38969 | 38924 | ID=Msa1444660-mRNA-1:cds;Parent=Msa1444660-mRNA-1 |
tig0030776 | CDS | 39056 | 39151 | 39056 | ID=Msa1444660-mRNA-1:cds;Parent=Msa1444660-mRNA-1 |
Gene Sequence |
Protein sequence |