AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606260 MtrunA17_Chr4g0035811 93.253 578 33 3 1 574 1 576 0.0 1032
Msa0606260 MtrunA17_Chr4g0035791 89.617 549 49 3 33 574 1 548 0.0 960
Msa0606260 MtrunA17_Chr4g0035761 80.651 553 92 3 33 573 1 550 0.0 878
Msa0606260 MtrunA17_Chr4g0035741 71.667 540 135 5 40 574 24 550 0.0 761
Msa0606260 MtrunA17_Chr4g0035751 70.732 533 142 7 33 561 1 523 0.0 738
Msa0606260 MtrunA17_Chr5g0448591 24.419 516 329 15 71 556 59 543 2.04e-23 104
Msa0606260 MtrunA17_Chr2g0328761 24.160 476 299 12 132 556 36 500 3.36e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606260 AT2G21340.1 70.833 456 131 2 120 574 105 559 0.0 680
Msa0606260 AT2G21340.2 70.395 456 130 3 120 574 105 556 0.0 671
Msa0606260 AT4G39030.1 65.066 458 151 2 121 573 89 542 0.0 614
Msa0606260 AT2G38330.1 25.194 516 352 10 55 556 13 508 6.00e-22 100
Msa0606260 AT4G38380.5 23.452 533 349 16 56 556 32 537 3.05e-16 82.4
Msa0606260 AT4G38380.2 22.694 542 352 15 56 556 32 547 2.02e-15 79.7
Msa0606260 AT4G38380.1 22.694 542 352 15 56 556 32 547 2.02e-15 79.7
Msa0606260 AT3G08040.1 25.613 367 246 11 201 556 162 512 3.82e-14 75.5
Msa0606260 AT3G08040.2 25.613 367 246 11 201 556 58 408 5.12e-14 74.7
Msa0606260 AT4G38380.3 23.014 491 305 14 110 556 14 475 6.36e-13 71.6
Msa0606260 AT1G51340.3 22.912 467 292 10 149 556 51 508 1.23e-12 70.9
Msa0606260 AT1G51340.5 22.912 467 292 10 149 556 51 508 1.23e-12 70.9
Msa0606260 AT1G51340.2 22.912 467 292 10 149 556 51 508 1.23e-12 70.9
Msa0606260 AT1G51340.1 22.912 467 292 10 149 556 45 502 1.75e-12 70.5
Msa0606260 AT4G38380.4 23.210 461 282 13 140 556 5 437 3.58e-11 65.9

Find 152 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCGTTCTTGGAATT+TGG 0.118992 4_2:-52392421 Msa0606260:three_prime_UTR
TTTGAATGGTCTAGTATTAT+TGG 0.209178 4_2:-52393085 Msa0606260:intron
GTCGATTGCTACTTCAAATA+TGG 0.215269 4_2:-52398224 Msa0606260:CDS
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_2:-52398453 Msa0606260:CDS
TACTCTCCTCTATTTCTAAA+TGG 0.226180 4_2:+52392447 None:intergenic
AGTAAATATGTTCTCGTTCT+TGG 0.242038 4_2:-52392428 Msa0606260:three_prime_UTR
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4_2:-52395735 Msa0606260:CDS
ATTTGTGACATTGATGTTAA+AGG 0.250101 4_2:-52395235 Msa0606260:intron
AAGGAAATTGTATTGTTTAC+TGG 0.254805 4_2:-52398472 Msa0606260:CDS
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4_2:-52394583 Msa0606260:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_2:-52398376 Msa0606260:intron
ATCAATGGGTACAAATAAAA+TGG 0.278415 4_2:-52395093 Msa0606260:CDS
ATGGGATTGCTGGGGCTGCA+TGG 0.278670 4_2:-52395677 Msa0606260:CDS
CTCTGAAAATCATCTGTAGA+TGG 0.279023 4_2:+52392284 None:intergenic
TGCCACTGGGTATAGTTATT+TGG 0.282587 4_2:-52392499 Msa0606260:three_prime_UTR
ACCAATTCCATTTATAATAC+TGG 0.285900 4_2:+52395728 None:intergenic
TGTTCTCGTTCTTGGAATTT+GGG 0.288693 4_2:-52392420 Msa0606260:three_prime_UTR
GGAGTTCCATTTATAGTTCA+TGG 0.296507 4_2:-52392729 Msa0606260:three_prime_UTR
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4_2:-52395757 Msa0606260:CDS
TGCTACTGCACTTGCTAAAC+AGG 0.315887 4_2:-52398200 Msa0606260:intron
ATGTTTGCACCTTGCACTTT+GGG 0.319354 4_2:+52396244 None:intergenic
GTCTTGGTATGAAGGATTCT+TGG 0.321480 4_2:-52395776 Msa0606260:CDS
TTTGCCTTCACCATTCCTTC+AGG 0.327061 4_2:-52395297 Msa0606260:CDS
AATGTACCATGAACTATAAA+TGG 0.328094 4_2:+52392723 None:intergenic
CATAAATGATTGAGCAGTTT+GGG 0.328411 4_2:+52394905 None:intergenic
TACTTAGGCTATGGGATTGC+TGG 0.328970 4_2:-52395687 Msa0606260:CDS
ATCCCTTCTCGTTTAGAGTT+TGG 0.333193 4_2:+52395328 None:intergenic
GGTACTATATGTACATTCTT+TGG 0.333716 4_2:+52396618 None:intergenic
CCCTCCAGGCCAACAGTTGC+GGG 0.334192 4_2:+52394322 None:intergenic
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_2:-52398409 Msa0606260:CDS
AACTGGTTGAGCAGAGTATA+TGG 0.336997 4_2:-52398504 Msa0606260:CDS
TTGTTTACTGGACCTGCTAT+TGG 0.337810 4_2:-52398460 Msa0606260:CDS
TGGGATTGCTGGGGCTGCAT+GGG 0.346105 4_2:-52395676 Msa0606260:CDS
TCGGAAACTAAGCGGGGAAA+TGG 0.352075 4_2:-52392582 Msa0606260:three_prime_UTR
GCATAAATGATTGAGCAGTT+TGG 0.352223 4_2:+52394904 None:intergenic
TTTCCCTTGCTGGATTTCAA+TGG 0.356634 4_2:-52392941 Msa0606260:CDS
CGGAAACTAAGCGGGGAAAT+GGG 0.359119 4_2:-52392581 Msa0606260:three_prime_UTR
GCATGGCCTTGTTTACTTGT+TGG 0.365617 4_2:-52396275 Msa0606260:CDS
CATGGCCTTGTTTACTTGTT+GGG 0.366151 4_2:-52396274 Msa0606260:CDS
AGTTGAAGACTGCATAGTTT+AGG 0.368285 4_2:-52392750 Msa0606260:exon
CAGATCCTATCTAGCAGATA+TGG 0.371566 4_2:-52392981 Msa0606260:CDS
CTAACTATTGGAGCTGTACT+CGG 0.380237 4_2:-52394571 Msa0606260:CDS
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4_2:-52394600 Msa0606260:intron
TCTTGGTATGAAGGATTCTT+GGG 0.387786 4_2:-52395775 Msa0606260:CDS
GGATTCTTGGGGACCCTTGA+AGG 0.393221 4_2:-52395763 Msa0606260:CDS
GCAAACCATATCTGCTAGAT+AGG 0.394990 4_2:+52392976 None:intergenic
TTCATGCAGTCTTGGTATGA+AGG 0.398143 4_2:-52395784 Msa0606260:intron
TTCCCTTGCTGGATTTCAAT+GGG 0.401577 4_2:-52392940 Msa0606260:intron
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_2:-52398445 Msa0606260:CDS
TGGCCTGGAGGGAACATTGC+TGG 0.407179 4_2:-52394311 Msa0606260:intron
ACCTGATCAGATGGTTATCC+AGG 0.414172 4_2:-52394491 Msa0606260:CDS
GCGATCAAGTGTGGTGCCAC+TGG 0.414677 4_2:-52392513 Msa0606260:three_prime_UTR
GATTGAGCAGTTTGGGATAG+AGG 0.415616 4_2:+52394912 None:intergenic
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4_2:+52395749 None:intergenic
AACATCAATGTCACAAATAC+AGG 0.423376 4_2:+52395240 None:intergenic
GTATGGAGTAAATCGGAGTT+TGG 0.425725 4_2:-52394871 Msa0606260:CDS
AGAAGAAGAAGTGAAGGAAC+TGG 0.429921 4_2:-52398521 Msa0606260:CDS
GCCAGTATTATAAATGGAAT+TGG 0.442168 4_2:-52395729 Msa0606260:CDS
TGGGGCTGCATGGGCTACAT+TGG 0.444208 4_2:-52395667 Msa0606260:CDS
TCCCTCCAGGCCAACAGTTG+CGG 0.444843 4_2:+52394321 None:intergenic
TATGTTTGCACCTTGCACTT+TGG 0.449203 4_2:+52396243 None:intergenic
CTGTGCAGATACTTAGGCTA+TGG 0.449705 4_2:-52395696 Msa0606260:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4_2:-52392453 Msa0606260:three_prime_UTR
TTTATAAGCTTGTCAATGAC+TGG 0.456026 4_2:-52393117 Msa0606260:CDS
CACACCCGCAACTGTTGGCC+TGG 0.462187 4_2:-52394326 Msa0606260:CDS
AAGATATATGTTCAAGGCGG+TGG 0.465973 4_2:+52392539 None:intergenic
CGCAGCTAATACTTATGTCC+AGG 0.472482 4_2:-52396595 Msa0606260:intron
CCCGCAACTGTTGGCCTGGA+GGG 0.472789 4_2:-52394322 Msa0606260:CDS
TTTGCTTATGCAGGCTGGAC+GGG 0.473101 4_2:-52393148 Msa0606260:intron
TTTATGCCTGAGTTGATGTA+TGG 0.474513 4_2:-52394888 Msa0606260:CDS
ATAATTCTGTGCAGATACTT+AGG 0.476106 4_2:-52395702 Msa0606260:CDS
TTGTTGGAACATCTGTTCCT+TGG 0.476393 4_2:-52394534 Msa0606260:CDS
AAATGCCATTGGGAGATAGA+AGG 0.478517 4_2:+52392809 None:intergenic
CTCGAAGCGACCGTTCCGGC+TGG 0.479325 4_2:+52398630 None:intergenic
TCCTGGATAACCATCTGATC+AGG 0.491456 4_2:+52394490 None:intergenic
AGTTGATGTATGGAGTAAAT+CGG 0.492680 4_2:-52394878 Msa0606260:CDS
AATTGGGAAGATGACGGAAA+AGG 0.493188 4_2:+52398834 None:intergenic
AGTTGTATCGGAAACTAAGC+GGG 0.499067 4_2:-52392589 Msa0606260:three_prime_UTR
TTGCCTTCACCATTCCTTCA+GGG 0.500207 4_2:-52395296 Msa0606260:CDS
TTGGTATTAGATACGAGGGT+TGG 0.500955 4_2:-52396297 Msa0606260:intron
CTACAGGTGCTGAGTTGTAT+CGG 0.501483 4_2:-52392601 Msa0606260:three_prime_UTR
AGAACTCGAAGCGACCGTTC+CGG 0.502877 4_2:+52398626 None:intergenic
TATTGGGTTAGCATGTGGCT+TGG 0.503143 4_2:-52396822 Msa0606260:CDS
TATGTTTGTGTAGGATAGGG+AGG 0.503528 4_2:-52396876 Msa0606260:intron
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4_2:+52392798 None:intergenic
TCCGAGTATAAAATGCCATT+GGG 0.511889 4_2:+52392799 None:intergenic
ACTTAGGCTATGGGATTGCT+GGG 0.518480 4_2:-52395686 Msa0606260:CDS
CTTCACCATTCCTTCAGGGA+AGG 0.523053 4_2:-52395292 Msa0606260:CDS
AGATGTGTTCTTCTTGAGAA+GGG 0.525128 4_2:+52398687 None:intergenic
TGGGAGATAGAAGGCGCAGA+AGG 0.526952 4_2:+52392818 None:intergenic
TAACTATTGGAGCTGTACTC+GGG 0.527379 4_2:-52394570 Msa0606260:CDS
TAGATGTGTTCTTCTTGAGA+AGG 0.532139 4_2:+52398686 None:intergenic
GAGTATATGGATTCAGATGA+AGG 0.533192 4_2:-52398491 Msa0606260:CDS
AGTAAATCGGAGTTTGGTAA+AGG 0.533532 4_2:-52394865 Msa0606260:intron
GAATTGTATCGACATTAAGA+TGG 0.534271 4_2:+52392636 None:intergenic
AAATCATCTGTAGATGGGAA+TGG 0.535165 4_2:+52392290 None:intergenic
TCTGAAAATCATCTGTAGAT+GGG 0.543808 4_2:+52392285 None:intergenic
GGAAACTAAGCGGGGAAATG+GGG 0.546802 4_2:-52392580 Msa0606260:three_prime_UTR
CGATCAAGTGTGGTGCCACT+GGG 0.547254 4_2:-52392512 Msa0606260:three_prime_UTR
TGTGCAGATACTTAGGCTAT+GGG 0.548209 4_2:-52395695 Msa0606260:CDS
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4_2:+52392472 None:intergenic
ATTCAGTACTCGGAAACTAC+AGG 0.553904 4_2:-52392617 Msa0606260:three_prime_UTR
GGGGATGGGAGGAAATGAAG+AGG 0.555232 4_2:+52398709 None:intergenic
AAATTCCTTCCCTGAAGGAA+TGG 0.556149 4_2:+52395287 None:intergenic
ATTTGCTTATGCAGGCTGGA+CGG 0.559004 4_2:-52393149 Msa0606260:intron
ATGGTCACACCCGCAACTGT+TGG 0.560257 4_2:-52394331 Msa0606260:CDS
ATTACATCCTCCAGCCGGAA+CGG 0.560561 4_2:-52398640 Msa0606260:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_2:+52395282 None:intergenic
TTTGGTGCAACAACGCTCGC+AGG 0.566164 4_2:-52396776 Msa0606260:intron
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_2:+52394308 None:intergenic
TGTCGATACAATTCAGTACT+CGG 0.568524 4_2:-52392627 Msa0606260:three_prime_UTR
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4_2:+52395750 None:intergenic
ATGGTACATTATACAAATAG+AGG 0.576635 4_2:-52392710 Msa0606260:three_prime_UTR
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4_2:-52392965 Msa0606260:CDS
TCTAGCAGATATGGTTTGCA+AGG 0.584349 4_2:-52392972 Msa0606260:CDS
GAGCCAAACTCTAAACGAGA+AGG 0.585139 4_2:-52395331 Msa0606260:CDS
GATGTGTTCTTCTTGAGAAG+GGG 0.585483 4_2:+52398688 None:intergenic
TCTGTAACATTGAAATCCGC+GGG 0.585948 4_2:+52398878 None:intergenic
ATTAGATACGAGGGTTGGCA+TGG 0.586428 4_2:-52396292 Msa0606260:intron
CTGCGCCTTCTATCTCCCAA+TGG 0.586913 4_2:-52392814 Msa0606260:CDS
GGTCGATCGCCCAAAGTGCA+AGG 0.590625 4_2:-52396253 Msa0606260:intron
GTCTGTAACATTGAAATCCG+CGG 0.593205 4_2:+52398877 None:intergenic
GAAACTAAGCGGGGAAATGG+GGG 0.595816 4_2:-52392579 Msa0606260:three_prime_UTR
ATGTGTTCTTCTTGAGAAGG+GGG 0.603100 4_2:+52398689 None:intergenic
GAAGCGACCGTTCCGGCTGG+AGG 0.603861 4_2:+52398633 None:intergenic
CTTCCCTGAAGGAATGGTGA+AGG 0.604960 4_2:+52395293 None:intergenic
AGCCAAACTCTAAACGAGAA+GGG 0.607954 4_2:-52395330 Msa0606260:CDS
ACCCGCAACTGTTGGCCTGG+AGG 0.612770 4_2:-52394323 Msa0606260:CDS
TACATGTTATGCACAATATG+TGG 0.612778 4_2:-52394939 Msa0606260:CDS
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_2:-52398403 Msa0606260:CDS
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4_2:+52392819 None:intergenic
TGGACATAAGTATTAGCTGC+GGG 0.623250 4_2:+52396597 None:intergenic
GCATTATTACATCCTCCAGC+CGG 0.624638 4_2:-52398645 Msa0606260:CDS
GTATCAATGAGACTCATCAA+TGG 0.630837 4_2:+52398421 None:intergenic
TTTACTCCATACATCAACTC+AGG 0.632825 4_2:+52394882 None:intergenic
TACCCATTGAAATCCAGCAA+GGG 0.639256 4_2:+52392938 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_2:+52398448 None:intergenic
GGAAAGAGAAAGAAAACGAG+TGG 0.642394 4_2:+52398855 None:intergenic
ATCGACCCAACAAGTAAACA+AGG 0.644860 4_2:+52396269 None:intergenic
AGATTTGGTTATCATTCCCG+CGG 0.646896 4_2:-52398894 None:intergenic
CTTAGGCTATGGGATTGCTG+GGG 0.650164 4_2:-52395685 Msa0606260:CDS
TGTGTTCTTCTTGAGAAGGG+GGG 0.656271 4_2:+52398690 None:intergenic
CTTGGTATGAAGGATTCTTG+GGG 0.656274 4_2:-52395774 Msa0606260:CDS
TTACCCATTGAAATCCAGCA+AGG 0.667040 4_2:+52392937 None:intergenic
AAAATGTAGGGGAATAACCA+AGG 0.670464 4_2:+52394517 None:intergenic
GAGTTGTATCGGAAACTAAG+CGG 0.674848 4_2:-52392590 Msa0606260:three_prime_UTR
TGATCAGATGGTTATCCAGG+AGG 0.694479 4_2:-52394488 Msa0606260:intron
CTGGACATAAGTATTAGCTG+CGG 0.697551 4_2:+52396596 None:intergenic
GGAGGAAATGAAGAGGTACG+TGG 0.705335 4_2:+52398716 None:intergenic
TGACTTGTAAGGTAGGAATG+TGG 0.734667 4_2:-52392389 Msa0606260:three_prime_UTR
GTTGTATCGGAAACTAAGCG+GGG 0.736927 4_2:-52392588 Msa0606260:three_prime_UTR
TACCAAATAACTATACCCAG+TGG 0.759548 4_2:+52392497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGATTTTAAAAAAATTGA+AGG - chr4_2:52393740-52393759 Msa0606260:intron 10.0%
!! TATCATTTAATTCATATTAT+TGG - chr4_2:52395358-52395377 Msa0606260:intron 10.0%
!! TTAATTAATCATATCATATA+TGG - chr4_2:52395736-52395755 Msa0606260:CDS 10.0%
!! TAATTAATCATATCATATAT+GGG - chr4_2:52395737-52395756 Msa0606260:CDS 10.0%
!! AGAAAACAGAAAAAAAAATT+GGG + chr4_2:52392362-52392381 None:intergenic 15.0%
!! AAGAAAACAGAAAAAAAAAT+TGG + chr4_2:52392363-52392382 None:intergenic 15.0%
!!! CATATTTAGAAACATTTTAT+AGG - chr4_2:52393808-52393827 Msa0606260:intron 15.0%
!! ACAATCTTAATTTAAATTGA+AGG + chr4_2:52394627-52394646 None:intergenic 15.0%
!!! TTTCTTGTGATTTTAAATAA+AGG - chr4_2:52394718-52394737 Msa0606260:intron 15.0%
!!! ATTTTAAATAAAGGTTTGTA+TGG - chr4_2:52394727-52394746 Msa0606260:intron 15.0%
!! TTTATCACTAAAATAGAATA+TGG + chr4_2:52395039-52395058 None:intergenic 15.0%
!! TTGTATTAAGCTTATTAATT+AGG - chr4_2:52395620-52395639 Msa0606260:intron 15.0%
!!! GAATTTTCAGTTATATTTAA+AGG + chr4_2:52396019-52396038 None:intergenic 15.0%
!!! TTAAAATATGTTTTTGAGTT+TGG + chr4_2:52396186-52396205 None:intergenic 15.0%
!!! AGTTGAATTTCATTTTATAT+AGG - chr4_2:52396418-52396437 Msa0606260:intron 15.0%
!! TGAATATATATAACAATGTA+TGG + chr4_2:52396531-52396550 None:intergenic 15.0%
!!! TTATTTTATTGTTCTTATGT+TGG - chr4_2:52396924-52396943 Msa0606260:intron 15.0%
!!! ATTTTTATGCTAAAAATCTT+AGG + chr4_2:52396997-52397016 None:intergenic 15.0%
!! TAAAAGATATAAAATTACCA+TGG + chr4_2:52397071-52397090 None:intergenic 15.0%
!! ATAATAAATGGGAAAAAATA+TGG - chr4_2:52397395-52397414 Msa0606260:intron 15.0%
!! GTTATTAAGTACATTATATA+TGG + chr4_2:52397555-52397574 None:intergenic 15.0%
!! ACTTATTTATATATTTATCC+AGG - chr4_2:52397976-52397995 Msa0606260:intron 15.0%
!!! TGACACTAATTATATTTTTA+TGG + chr4_2:52398865-52398884 None:intergenic 15.0%
!!! TAATGCATTGTTTTGTTAAA+TGG + chr4_2:52392518-52392537 None:intergenic 20.0%
!!! TTTTTCTTCATATTCATGTA+TGG + chr4_2:52392607-52392626 None:intergenic 20.0%
!!! TACTGTTTTTTGTGATTATT+TGG - chr4_2:52392911-52392930 Msa0606260:intron 20.0%
!!! ACTGTTTTTTGTGATTATTT+GGG - chr4_2:52392912-52392931 Msa0606260:intron 20.0%
!!! TAAAAATCTAAGATCAGTTT+GGG - chr4_2:52393522-52393541 Msa0606260:intron 20.0%
!! TGTTATATGATCATATATTG+TGG + chr4_2:52393770-52393789 None:intergenic 20.0%
!!! CTTTTTTTCACAAGATTATT+TGG - chr4_2:52394383-52394402 Msa0606260:intron 20.0%
!! AAATACTTAAACTATTCTCA+GGG + chr4_2:52395277-52395296 None:intergenic 20.0%
!! TAAATACTTAAACTATTCTC+AGG + chr4_2:52395278-52395297 None:intergenic 20.0%
!! TATGTTGTAGATAATGAATT+AGG - chr4_2:52395564-52395583 Msa0606260:intron 20.0%
!! ATGTTGTAGATAATGAATTA+GGG - chr4_2:52395565-52395584 Msa0606260:intron 20.0%
!! GATTAATTAATTATGATGTG+TGG + chr4_2:52395726-52395745 None:intergenic 20.0%
!!! TATATATTTTGCTACATCAA+TGG - chr4_2:52396069-52396088 Msa0606260:intron 20.0%
!!! ATATATTTTGCTACATCAAT+GGG - chr4_2:52396070-52396089 Msa0606260:intron 20.0%
!!! TTTAATCCAACTCTTATTTT+AGG - chr4_2:52396201-52396220 Msa0606260:intron 20.0%
!! TACTACAATATGAATTAGTA+AGG + chr4_2:52396500-52396519 None:intergenic 20.0%
!! TCATGTTAGATTGAAATATT+AGG - chr4_2:52396894-52396913 Msa0606260:intron 20.0%
!! TTGAATTTAAAGGGAAATAA+TGG + chr4_2:52397355-52397374 None:intergenic 20.0%
!! TTCAACTTGTCTATAATAAA+TGG - chr4_2:52397383-52397402 Msa0606260:intron 20.0%
!! TCAACTTGTCTATAATAAAT+GGG - chr4_2:52397384-52397403 Msa0606260:intron 20.0%
!!! AAGGCATTAATTAGTTATAT+GGG + chr4_2:52397856-52397875 None:intergenic 20.0%
!!! TAAGGCATTAATTAGTTATA+TGG + chr4_2:52397857-52397876 None:intergenic 20.0%
! AAAAAAAATTGGGAAGATGA+CGG + chr4_2:52392352-52392371 None:intergenic 25.0%
! AAGGAAATTGTATTGTTTAC+TGG - chr4_2:52392705-52392724 Msa0606260:three_prime_UTR 25.0%
! TTATCTACCCAGTTAAAAAA+GGG + chr4_2:52393018-52393037 None:intergenic 25.0%
! TGACAATTATATTAGAGATG+TGG - chr4_2:52393397-52393416 Msa0606260:intron 25.0%
! GACAATTATATTAGAGATGT+GGG - chr4_2:52393398-52393417 Msa0606260:intron 25.0%
!! CTAAAAATCTAAGATCAGTT+TGG - chr4_2:52393521-52393540 Msa0606260:intron 25.0%
!! AAAAATCTAAGATCAGTTTG+GGG - chr4_2:52393523-52393542 Msa0606260:intron 25.0%
!!! ACTACAATTTTCAAGTTCAT+GGG + chr4_2:52393664-52393683 None:intergenic 25.0%
! CTTATGAGTTTATACTTAAG+AGG - chr4_2:52393691-52393710 Msa0606260:intron 25.0%
!! TTTATGCACACAGAAATTTT+AGG - chr4_2:52394249-52394268 Msa0606260:intron 25.0%
!!! ATATCTGTCTTGCTTTTTAT+TGG - chr4_2:52394338-52394357 Msa0606260:CDS 25.0%
!!! TATCTGTCTTGCTTTTTATT+GGG - chr4_2:52394339-52394358 Msa0606260:CDS 25.0%
! ATTACTATCATCCCAAAAAA+TGG + chr4_2:52394458-52394477 None:intergenic 25.0%
! TAGTAATCAGAAAAAAAACC+TGG + chr4_2:52394603-52394622 None:intergenic 25.0%
! AATTGAAGTTACTCATTTCT+CGG + chr4_2:52394694-52394713 None:intergenic 25.0%
! AAGTATACAACCTTTCAAAT+AGG - chr4_2:52394767-52394786 Msa0606260:intron 25.0%
! TACATATTGAGATTGATCAA+AGG - chr4_2:52394815-52394834 Msa0606260:intron 25.0%
! AATCATCAACATAGAGAAAA+CGG + chr4_2:52395154-52395173 None:intergenic 25.0%
! AACAGTTCAAAGAATGATTT+AGG + chr4_2:52395236-52395255 None:intergenic 25.0%
! ACCAATTCCATTTATAATAC+TGG + chr4_2:52395452-52395471 None:intergenic 25.0%
!! ATATAGAAGCTTTAACTCAT+GGG + chr4_2:52395646-52395665 None:intergenic 25.0%
!! TATATAGAAGCTTTAACTCA+TGG + chr4_2:52395647-52395666 None:intergenic 25.0%
! TAGTTTAGTGCATTGAAAAT+AGG + chr4_2:52395767-52395786 None:intergenic 25.0%
! ATTTGTGACATTGATGTTAA+AGG - chr4_2:52395942-52395961 Msa0606260:intron 25.0%
! AACTGAAAATTCTGATGTTT+AGG - chr4_2:52396027-52396046 Msa0606260:intron 25.0%
! ATCAATGGGTACAAATAAAA+TGG - chr4_2:52396084-52396103 Msa0606260:intron 25.0%
! ATAGTTACAAAATACAAGAC+AGG + chr4_2:52396133-52396152 None:intergenic 25.0%
! AAATGATCATCCTGTATATA+AGG + chr4_2:52396378-52396397 None:intergenic 25.0%
!!! AACTTTCTTTTTGGTTTGAA+GGG - chr4_2:52396447-52396466 Msa0606260:intron 25.0%
!!! AGAAATTTTCAAGTTTCCTT+TGG - chr4_2:52396741-52396760 Msa0606260:intron 25.0%
!! TGATAACAACTTGATCTTTT+AGG + chr4_2:52397234-52397253 None:intergenic 25.0%
!! TTATTATAGACAAGTTGAAC+CGG + chr4_2:52397382-52397401 None:intergenic 25.0%
!!! CAGTGCAATTTTCTTTTTTA+AGG - chr4_2:52397521-52397540 Msa0606260:intron 25.0%
! TTTGAATGGTCTAGTATTAT+TGG - chr4_2:52398092-52398111 Msa0606260:intron 25.0%
!! TAGCATTTTCTATGAATTCT+AGG + chr4_2:52398274-52398293 None:intergenic 25.0%
! CATATTGTGTTTATTAGGTT+CGG - chr4_2:52398325-52398344 Msa0606260:intron 25.0%
! AATGTACCATGAACTATAAA+TGG + chr4_2:52398457-52398476 None:intergenic 25.0%
! ATGGTACATTATACAAATAG+AGG - chr4_2:52398467-52398486 Msa0606260:CDS 25.0%
! AAAAAGATATATGTTCAAGG+CGG + chr4_2:52398644-52398663 None:intergenic 25.0%
CACTTCGAAGAAAACAAAAA+TGG - chr4_2:52392389-52392408 Msa0606260:three_prime_UTR 30.0%
GCGCAATTTCAACAATTAAA+CGG + chr4_2:52392852-52392871 None:intergenic 30.0%
!!! ATTTTGTTTTCTTCATGAGC+AGG - chr4_2:52392882-52392901 Msa0606260:intron 30.0%
TAATCACAAAAAACAGTAGC+AGG + chr4_2:52392909-52392928 None:intergenic 30.0%
!!! TTTAATGCCCCTTTTTTAAC+TGG - chr4_2:52393007-52393026 Msa0606260:intron 30.0%
!!! TTAATGCCCCTTTTTTAACT+GGG - chr4_2:52393008-52393027 Msa0606260:intron 30.0%
TATCTACCCAGTTAAAAAAG+GGG + chr4_2:52393017-52393036 None:intergenic 30.0%
GTTATCTACCCAGTTAAAAA+AGG + chr4_2:52393019-52393038 None:intergenic 30.0%
TACATATGGCTAATGATCTA+AGG - chr4_2:52393096-52393115 Msa0606260:CDS 30.0%
!!! TAAGGTTTTAGGTAGAAATG+TGG - chr4_2:52393114-52393133 Msa0606260:CDS 30.0%
CAAGTTAATAATCAGGATTC+TGG + chr4_2:52393160-52393179 None:intergenic 30.0%
GCAACAACAAGTTAATAATC+AGG + chr4_2:52393167-52393186 None:intergenic 30.0%
CTTTATATCGAAAGTCTTTC+TGG - chr4_2:52393259-52393278 Msa0606260:intron 30.0%
TGTGAGAAACTTACAATTGA+TGG - chr4_2:52393331-52393350 Msa0606260:intron 30.0%
GTGAGAAACTTACAATTGAT+GGG - chr4_2:52393332-52393351 Msa0606260:intron 30.0%
! AAAATCTAAGATCAGTTTGG+GGG - chr4_2:52393524-52393543 Msa0606260:intron 30.0%
!!! CTACAATTTTCAAGTTCATG+GGG + chr4_2:52393663-52393682 None:intergenic 30.0%
!!! CACTACAATTTTCAAGTTCA+TGG + chr4_2:52393665-52393684 None:intergenic 30.0%
TAATTTGAGCTAAGGGATAA+AGG + chr4_2:52393934-52393953 None:intergenic 30.0%
GTTCAACTAATTTGAGCTAA+GGG + chr4_2:52393941-52393960 None:intergenic 30.0%
AGTTCAACTAATTTGAGCTA+AGG + chr4_2:52393942-52393961 None:intergenic 30.0%
! AAATGCTTTAGGTTCTGTTT+GGG + chr4_2:52393996-52394015 None:intergenic 30.0%
ACTCGTATATCAAATGCTTT+AGG + chr4_2:52394007-52394026 None:intergenic 30.0%
! ATCTGAAGCAATCTATGATT+AGG - chr4_2:52394142-52394161 Msa0606260:intron 30.0%
CAAACATACTTACTCATGAA+AGG + chr4_2:52394289-52394308 None:intergenic 30.0%
ATGAGTAAGTATGTTTGTGT+AGG - chr4_2:52394292-52394311 Msa0606260:intron 30.0%
TAAGTATGTTTGTGTAGGAT+AGG - chr4_2:52394297-52394316 Msa0606260:intron 30.0%
AAGTATGTTTGTGTAGGATA+GGG - chr4_2:52394298-52394317 Msa0606260:intron 30.0%
GTAATTCACCAATGCATAAA+TGG - chr4_2:52394473-52394492 Msa0606260:intron 30.0%
CTCTATTACCATTTATGCAT+TGG + chr4_2:52394484-52394503 None:intergenic 30.0%
TAGAACAATTCATCAGACAT+GGG + chr4_2:52394512-52394531 None:intergenic 30.0%
ATAGAACAATTCATCAGACA+TGG + chr4_2:52394513-52394532 None:intergenic 30.0%
GGTACTATATGTACATTCTT+TGG + chr4_2:52394562-52394581 None:intergenic 30.0%
AAAGCAGAATCCTATTTGAA+AGG + chr4_2:52394780-52394799 None:intergenic 30.0%
TATTGAGATTGATCAAAGGA+AGG - chr4_2:52394819-52394838 Msa0606260:intron 30.0%
! TAGTAACACTGGATTTCTTT+TGG - chr4_2:52394861-52394880 Msa0606260:intron 30.0%
! TTCTTTTGGTATTAGATACG+AGG - chr4_2:52394875-52394894 Msa0606260:CDS 30.0%
! TCTTTTGGTATTAGATACGA+GGG - chr4_2:52394876-52394895 Msa0606260:CDS 30.0%
! AATAGCTGCTTAGAAACTTT+TGG - chr4_2:52395068-52395087 Msa0606260:intron 30.0%
!!! AATGACTTTTTCAGATAGCA+AGG - chr4_2:52395111-52395130 Msa0606260:CDS 30.0%
GAAAACGGTATTAAGACAAA+AGG + chr4_2:52395139-52395158 None:intergenic 30.0%
GCCAGTATTATAAATGGAAT+TGG - chr4_2:52395448-52395467 Msa0606260:intron 30.0%
ATAATTCTGTGCAGATACTT+AGG - chr4_2:52395475-52395494 Msa0606260:intron 30.0%
AGATAATGAATTAGGGTTGT+AGG - chr4_2:52395572-52395591 Msa0606260:intron 30.0%
AACATCAATGTCACAAATAC+AGG + chr4_2:52395940-52395959 None:intergenic 30.0%
TGAAAATTCTGATGTTTAGG+TGG - chr4_2:52396030-52396049 Msa0606260:intron 30.0%
TACATGTTATGCACAATATG+TGG - chr4_2:52396238-52396257 Msa0606260:intron 30.0%
! AGTTGATGTATGGAGTAAAT+CGG - chr4_2:52396299-52396318 Msa0606260:intron 30.0%
! AGGAAGATCAACTTTCTTTT+TGG - chr4_2:52396438-52396457 Msa0606260:intron 30.0%
!!! CAACTTTCTTTTTGGTTTGA+AGG - chr4_2:52396446-52396465 Msa0606260:intron 30.0%
GTCAAGATACTATAAACTCA+GGG + chr4_2:52396560-52396579 None:intergenic 30.0%
TGTCAAGATACTATAAACTC+AGG + chr4_2:52396561-52396580 None:intergenic 30.0%
TGAGTTTATAGTATCTTGAC+AGG - chr4_2:52396560-52396579 Msa0606260:intron 30.0%
TGATCAGGTGTAAAAATGTA+GGG + chr4_2:52396675-52396694 None:intergenic 30.0%
!! TCAAGTTTCCTTTGGAATTA+AGG - chr4_2:52396749-52396768 Msa0606260:intron 30.0%
AAAAATCTTAGGCCAAGTAA+TGG + chr4_2:52396986-52397005 None:intergenic 30.0%
CCTACTTATTTAGGTAGAAT+GGG - chr4_2:52397145-52397164 Msa0606260:intron 30.0%
CTACTTATTTAGGTAGAATG+GGG - chr4_2:52397146-52397165 Msa0606260:intron 30.0%
CTACCAAATAGTTAAGAGTT+AGG + chr4_2:52397183-52397202 None:intergenic 30.0%
!! GAGGTTTTACATTGATAACT+CGG - chr4_2:52397257-52397276 Msa0606260:intron 30.0%
!! TTTTACATTGATAACTCGGA+GGG - chr4_2:52397261-52397280 Msa0606260:intron 30.0%
! TAAAGGGAAATAATGGAAGT+CGG + chr4_2:52397348-52397367 None:intergenic 30.0%
! TATTATAGACAAGTTGAACC+GGG + chr4_2:52397381-52397400 None:intergenic 30.0%
CTTATTCATGTAGATGTCTA+AGG - chr4_2:52397441-52397460 Msa0606260:intron 30.0%
!! TTAGGGTTAACTTGTAACAA+CGG - chr4_2:52397714-52397733 Msa0606260:intron 30.0%
AGTCTCATATCAACTATGAA+CGG - chr4_2:52397801-52397820 Msa0606260:intron 30.0%
! TAATGCCTTAAACTTTTGAG+TGG - chr4_2:52397867-52397886 Msa0606260:intron 30.0%
! TCTAGGATTAACATGAGATT+GGG + chr4_2:52397904-52397923 None:intergenic 30.0%
! ATCTAGGATTAACATGAGAT+TGG + chr4_2:52397905-52397924 None:intergenic 30.0%
AATAAGTTGTCATGACTGTT+GGG + chr4_2:52397963-52397982 None:intergenic 30.0%
AAATAAGTTGTCATGACTGT+TGG + chr4_2:52397964-52397983 None:intergenic 30.0%
TTGTCTATATTTGCTTATGC+AGG - chr4_2:52398020-52398039 Msa0606260:intron 30.0%
TTTATAAGCTTGTCAATGAC+TGG - chr4_2:52398060-52398079 Msa0606260:intron 30.0%
!! TATTGGTAACAACTTTTCCT+TGG - chr4_2:52398109-52398128 Msa0606260:intron 30.0%
AGGGACATATTGTGTTTATT+AGG - chr4_2:52398320-52398339 Msa0606260:intron 30.0%
! GAATTGTATCGACATTAAGA+TGG + chr4_2:52398544-52398563 None:intergenic 30.0%
CGCAAAAAGATATATGTTCA+AGG + chr4_2:52398647-52398666 None:intergenic 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG - chr4_2:52398699-52398718 Msa0606260:CDS 30.0%
!! AAACCTTTCTACTTTTATGG+TGG - chr4_2:52398702-52398721 Msa0606260:CDS 30.0%
!! TACTCTCCTCTATTTCTAAA+TGG + chr4_2:52398733-52398752 None:intergenic 30.0%
AGTAAATATGTTCTCGTTCT+TGG - chr4_2:52398749-52398768 Msa0606260:CDS 30.0%
! TCAAAAATGACTTGTAAGGT+AGG - chr4_2:52398781-52398800 Msa0606260:CDS 30.0%
AGATGTGTTCTTCTTGAGAA+GGG + chr4_2:52392493-52392512 None:intergenic 35.0%
TAGATGTGTTCTTCTTGAGA+AGG + chr4_2:52392494-52392513 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGTGA+AGG - chr4_2:52392650-52392669 Msa0606260:three_prime_UTR 35.0%
GAGTATATGGATTCAGATGA+AGG - chr4_2:52392686-52392705 Msa0606260:three_prime_UTR 35.0%
GTATCAATGAGACTCATCAA+TGG + chr4_2:52392759-52392778 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG - chr4_2:52392801-52392820 Msa0606260:CDS 35.0%
! GTCGATTGCTACTTCAAATA+TGG - chr4_2:52392953-52392972 Msa0606260:CDS 35.0%
TGCATTTCTGAACAGATAGT+TGG - chr4_2:52393050-52393069 Msa0606260:intron 35.0%
ACTGGTTGAGATGATACATA+TGG - chr4_2:52393082-52393101 Msa0606260:intron 35.0%
!! GGCTAATGATCTAAGGTTTT+AGG - chr4_2:52393103-52393122 Msa0606260:CDS 35.0%
! TAGGTAGAAATGTGGTGTTT+TGG - chr4_2:52393122-52393141 Msa0606260:CDS 35.0%
TTGTTGCTCTCTATGTTTCA+CGG - chr4_2:52393180-52393199 Msa0606260:intron 35.0%
! TTCACGGATTGTTGAACAAA+TGG - chr4_2:52393196-52393215 Msa0606260:intron 35.0%
ACTCTCCTATCAAGTTAACT+TGG + chr4_2:52393229-52393248 None:intergenic 35.0%
! AAGTTAACTTGATAGGAGAG+TGG - chr4_2:52393228-52393247 Msa0606260:intron 35.0%
! AGTTAACTTGATAGGAGAGT+GGG - chr4_2:52393229-52393248 Msa0606260:intron 35.0%
ACAATTGATGGGAAGATTGT+TGG - chr4_2:52393343-52393362 Msa0606260:intron 35.0%
GAAAAAAGGAACGAGAAAGT+GGG - chr4_2:52393572-52393591 Msa0606260:intron 35.0%
!!! TTTTTTTCTCTCTTTCGTCC+AGG - chr4_2:52393886-52393905 Msa0606260:intron 35.0%
! CAAATGCTTTAGGTTCTGTT+TGG + chr4_2:52393997-52394016 None:intergenic 35.0%
TACCATTGTTGGGTGTATAT+AGG + chr4_2:52394109-52394128 None:intergenic 35.0%
GCAAATGGCAAAAAATTCAC+TGG + chr4_2:52394210-52394229 None:intergenic 35.0%
ATACTTACTCATGAAAGGCA+GGG + chr4_2:52394284-52394303 None:intergenic 35.0%
!!! CTTTTTATTGGGTTAGCATG+TGG - chr4_2:52394350-52394369 Msa0606260:CDS 35.0%
!!! ACCAGTTGTGTCCATTTTTT+GGG - chr4_2:52394444-52394463 Msa0606260:intron 35.0%
AGAACAATTCATCAGACATG+GGG + chr4_2:52394511-52394530 None:intergenic 35.0%
! AGTGTTACTAAATCAAGCAG+AGG + chr4_2:52394851-52394870 None:intergenic 35.0%
TCTGCTTGATTTAGTAACAC+TGG - chr4_2:52394850-52394869 Msa0606260:intron 35.0%
TCTTGGTATGAAGGATTCTT+GGG - chr4_2:52395402-52395421 Msa0606260:intron 35.0%
! ACATAATGCACGAGTTTGTT+CGG + chr4_2:52395549-52395568 None:intergenic 35.0%
AACAACCTGAAAACAAGAAG+GGG + chr4_2:52395812-52395831 None:intergenic 35.0%
CAACAACCTGAAAACAAGAA+GGG + chr4_2:52395813-52395832 None:intergenic 35.0%
!!! TTCTTGTTTTCAGGTTGTTG+CGG - chr4_2:52395813-52395832 Msa0606260:intron 35.0%
GCATGACCTAAAATAAGAGT+TGG + chr4_2:52396210-52396229 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+TGG - chr4_2:52396289-52396308 Msa0606260:CDS 35.0%
TTTACTCCATACATCAACTC+AGG + chr4_2:52396298-52396317 None:intergenic 35.0%
AGTAAATCGGAGTTTGGTAA+AGG - chr4_2:52396312-52396331 Msa0606260:intron 35.0%
ATCTCTCCAACCTTATATAC+AGG - chr4_2:52396365-52396384 Msa0606260:intron 35.0%
GATCATCCTGTATATAAGGT+TGG + chr4_2:52396374-52396393 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG - chr4_2:52396565-52396584 Msa0606260:intron 35.0%
CTAAGGTCTCTTCTAACTAT+TGG - chr4_2:52396594-52396613 Msa0606260:intron 35.0%
AAAATGTAGGGGAATAACCA+AGG + chr4_2:52396663-52396682 None:intergenic 35.0%
GATCAGGTGTAAAAATGTAG+GGG + chr4_2:52396674-52396693 None:intergenic 35.0%
CTGATCAGGTGTAAAAATGT+AGG + chr4_2:52396676-52396695 None:intergenic 35.0%
! CATTTTTACACCTGATCAGA+TGG - chr4_2:52396677-52396696 Msa0606260:intron 35.0%
AACAGAAGCCTTAATTCCAA+AGG + chr4_2:52396760-52396779 None:intergenic 35.0%
!! TCCATACTTTTTAGCGCTAA+TGG - chr4_2:52396827-52396846 Msa0606260:CDS 35.0%
ACCATTAGCGCTAAAAAGTA+TGG + chr4_2:52396831-52396850 None:intergenic 35.0%
!! TGTTGGTAGTCTTATTCAGT+TGG - chr4_2:52396941-52396960 Msa0606260:intron 35.0%
!! AACGTATTAGGCTTTTCAAG+AGG + chr4_2:52397037-52397056 None:intergenic 35.0%
AAGCCTAATACGTTTCACAT+AGG - chr4_2:52397043-52397062 Msa0606260:intron 35.0%
GAACCTATGTGAAACGTATT+AGG + chr4_2:52397049-52397068 None:intergenic 35.0%
AGGTACAAGCCTACTTATTT+AGG - chr4_2:52397136-52397155 Msa0606260:intron 35.0%
GCCTACTTATTTAGGTAGAA+TGG - chr4_2:52397144-52397163 Msa0606260:intron 35.0%
CCCATTCTACCTAAATAAGT+AGG + chr4_2:52397148-52397167 None:intergenic 35.0%
!! ACTTGATCTTTTAGGAGAAC+TGG + chr4_2:52397226-52397245 None:intergenic 35.0%
! GATCAAGTTGTTATCAAGAG+AGG - chr4_2:52397238-52397257 Msa0606260:intron 35.0%
!! GTTTTACATTGATAACTCGG+AGG - chr4_2:52397260-52397279 Msa0606260:intron 35.0%
! TTTACATTGATAACTCGGAG+GGG - chr4_2:52397262-52397281 Msa0606260:intron 35.0%
TCCCTTTAAATTCAATAGCC+CGG - chr4_2:52397360-52397379 Msa0606260:intron 35.0%
ACCGGGCTATTGAATTTAAA+GGG + chr4_2:52397364-52397383 None:intergenic 35.0%
AACCGGGCTATTGAATTTAA+AGG + chr4_2:52397365-52397384 None:intergenic 35.0%
! TATCAGATCTTGTTTCAGCT+TGG - chr4_2:52397610-52397629 Msa0606260:intron 35.0%
TGTATCGAAAGTCTTTCTAG+CGG - chr4_2:52397669-52397688 Msa0606260:intron 35.0%
GATGTGAAACTTACACTTGA+GGG - chr4_2:52397748-52397767 Msa0606260:intron 35.0%
ATGTGAAACTTACACTTGAG+GGG - chr4_2:52397749-52397768 Msa0606260:intron 35.0%
GTCTCATATCAACTATGAAC+GGG - chr4_2:52397802-52397821 Msa0606260:intron 35.0%
ACTATGAACGGGATAAATGT+TGG - chr4_2:52397813-52397832 Msa0606260:intron 35.0%
CATCTCCACTCAAAAGTTTA+AGG + chr4_2:52397875-52397894 None:intergenic 35.0%
!! TAAACTTTTGAGTGGAGATG+TGG - chr4_2:52397875-52397894 Msa0606260:intron 35.0%
CAATAACAGGCTAATGATCT+AGG + chr4_2:52397921-52397940 None:intergenic 35.0%
ATAAGTTGTCATGACTGTTG+GGG + chr4_2:52397962-52397981 None:intergenic 35.0%
TATTTATCCAGGTTGCATGT+TGG - chr4_2:52397987-52398006 Msa0606260:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG - chr4_2:52398078-52398097 Msa0606260:intron 35.0%
TTTCGTGAACATATTCTGAC+AGG - chr4_2:52398300-52398319 Msa0606260:intron 35.0%
TTCGTGAACATATTCTGACA+GGG - chr4_2:52398301-52398320 Msa0606260:intron 35.0%
! TCCCAATGGCATTTTATACT+CGG - chr4_2:52398377-52398396 Msa0606260:CDS 35.0%
TCCGAGTATAAAATGCCATT+GGG + chr4_2:52398381-52398400 None:intergenic 35.0%
TTCCGAGTATAAAATGCCAT+TGG + chr4_2:52398382-52398401 None:intergenic 35.0%
AGTTGAAGACTGCATAGTTT+AGG - chr4_2:52398427-52398446 Msa0606260:CDS 35.0%
GGAGTTCCATTTATAGTTCA+TGG - chr4_2:52398448-52398467 Msa0606260:CDS 35.0%
TGTCGATACAATTCAGTACT+CGG - chr4_2:52398550-52398569 Msa0606260:CDS 35.0%
! TATCTTTTTGCGATCAAGTG+TGG - chr4_2:52398655-52398674 Msa0606260:CDS 35.0%
TACCAAATAACTATACCCAG+TGG + chr4_2:52398683-52398702 None:intergenic 35.0%
AAGCCACCATAAAAGTAGAA+AGG + chr4_2:52398708-52398727 None:intergenic 35.0%
! GCTTTGCCATTTAGAAATAG+AGG - chr4_2:52398724-52398743 Msa0606260:CDS 35.0%
ATGTTCTCGTTCTTGGAATT+TGG - chr4_2:52398756-52398775 Msa0606260:CDS 35.0%
TGTTCTCGTTCTTGGAATTT+GGG - chr4_2:52398757-52398776 Msa0606260:CDS 35.0%
! GGGTTCAAAAATGACTTGTA+AGG - chr4_2:52398777-52398796 Msa0606260:CDS 35.0%
AAATCATCTGTAGATGGGAA+TGG + chr4_2:52398890-52398909 None:intergenic 35.0%
TCTGTAACATTGAAATCCGC+GGG + chr4_2:52392302-52392321 None:intergenic 40.0%
GTCTGTAACATTGAAATCCG+CGG + chr4_2:52392303-52392322 None:intergenic 40.0%
GGAAAGAGAAAGAAAACGAG+TGG + chr4_2:52392325-52392344 None:intergenic 40.0%
!! AATTGGGAAGATGACGGAAA+AGG + chr4_2:52392346-52392365 None:intergenic 40.0%
ATGTGTTCTTCTTGAGAAGG+GGG + chr4_2:52392491-52392510 None:intergenic 40.0%
GATGTGTTCTTCTTGAGAAG+GGG + chr4_2:52392492-52392511 None:intergenic 40.0%
AGAAGAAGAAGTGAAGGAAC+TGG - chr4_2:52392656-52392675 Msa0606260:three_prime_UTR 40.0%
AACTGGTTGAGCAGAGTATA+TGG - chr4_2:52392673-52392692 Msa0606260:three_prime_UTR 40.0%
TTGTTTACTGGACCTGCTAT+TGG - chr4_2:52392717-52392736 Msa0606260:three_prime_UTR 40.0%
CATAACCAAAGACCAATAGC+AGG + chr4_2:52392732-52392751 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG - chr4_2:52392732-52392751 Msa0606260:three_prime_UTR 40.0%
CTCATTGATACTGCTGTTGT+TGG - chr4_2:52392768-52392787 Msa0606260:CDS 40.0%
! CAGAGCCAAGTTAACTTGAT+AGG - chr4_2:52393221-52393240 Msa0606260:intron 40.0%
!! TGGTTAGTCTTCTATCGACT+AGG - chr4_2:52393363-52393382 Msa0606260:intron 40.0%
ATCAGTTTGGGGGTTTAAGA+AGG - chr4_2:52393534-52393553 Msa0606260:intron 40.0%
TCAGTTTGGGGGTTTAAGAA+GGG - chr4_2:52393535-52393554 Msa0606260:intron 40.0%
!! AAGGGAGAGCTTTGGAAAAA+AGG - chr4_2:52393558-52393577 Msa0606260:intron 40.0%
GGAAAAAAGGAACGAGAAAG+TGG - chr4_2:52393571-52393590 Msa0606260:intron 40.0%
ATAAAGGAATTGGAGGTCGT+GGG + chr4_2:52393918-52393937 None:intergenic 40.0%
CTAAGGGATAAAGGAATTGG+AGG + chr4_2:52393925-52393944 None:intergenic 40.0%
GAGCTAAGGGATAAAGGAAT+TGG + chr4_2:52393928-52393947 None:intergenic 40.0%
GACCTATATACACCCAACAA+TGG - chr4_2:52394104-52394123 Msa0606260:intron 40.0%
ATCCTCAGCTTACCATTGTT+GGG + chr4_2:52394119-52394138 None:intergenic 40.0%
TATCCTCAGCTTACCATTGT+TGG + chr4_2:52394120-52394139 None:intergenic 40.0%
TAGAGGTGGTACATAGCAAA+TGG + chr4_2:52394225-52394244 None:intergenic 40.0%
! TTTGCTATGTACCACCTCTA+TGG - chr4_2:52394225-52394244 Msa0606260:intron 40.0%
TGTGCATAAAACCATAGAGG+TGG + chr4_2:52394239-52394258 None:intergenic 40.0%
CTGTGTGCATAAAACCATAG+AGG + chr4_2:52394242-52394261 None:intergenic 40.0%
TACTTACTCATGAAAGGCAG+GGG + chr4_2:52394283-52394302 None:intergenic 40.0%
CATACTTACTCATGAAAGGC+AGG + chr4_2:52394285-52394304 None:intergenic 40.0%
TATGTTTGTGTAGGATAGGG+AGG - chr4_2:52394301-52394320 Msa0606260:intron 40.0%
!!! GACCAGTTGTGTCCATTTTT+TGG - chr4_2:52394443-52394462 Msa0606260:intron 40.0%
TCCCAAAAAATGGACACAAC+TGG + chr4_2:52394448-52394467 None:intergenic 40.0%
! TTGCCCTTTTCAGCTTTTAC+TGG - chr4_2:52394535-52394554 Msa0606260:CDS 40.0%
GGTCCAGTAAAAGCTGAAAA+GGG + chr4_2:52394541-52394560 None:intergenic 40.0%
TGGTCCAGTAAAAGCTGAAA+AGG + chr4_2:52394542-52394561 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+GGG + chr4_2:52394583-52394602 None:intergenic 40.0%
CTGGACATAAGTATTAGCTG+CGG + chr4_2:52394584-52394603 None:intergenic 40.0%
TTGGTATTAGATACGAGGGT+TGG - chr4_2:52394880-52394899 Msa0606260:CDS 40.0%
!! CATGGCCTTGTTTACTTGTT+GGG - chr4_2:52394903-52394922 Msa0606260:CDS 40.0%
ATCGACCCAACAAGTAAACA+AGG + chr4_2:52394911-52394930 None:intergenic 40.0%
ATGTTTGCACCTTGCACTTT+GGG + chr4_2:52394936-52394955 None:intergenic 40.0%
TATGTTTGCACCTTGCACTT+TGG + chr4_2:52394937-52394956 None:intergenic 40.0%
TAGGCATTAAGAACAGAGAG+AGG + chr4_2:52395217-52395236 None:intergenic 40.0%
CAAGACTGCATGAAAGAATG+TGG + chr4_2:52395387-52395406 None:intergenic 40.0%
CACATTCTTTCATGCAGTCT+TGG - chr4_2:52395385-52395404 Msa0606260:intron 40.0%
TTCATGCAGTCTTGGTATGA+AGG - chr4_2:52395393-52395412 Msa0606260:intron 40.0%
GTCTTGGTATGAAGGATTCT+TGG - chr4_2:52395401-52395420 Msa0606260:intron 40.0%
CTTGGTATGAAGGATTCTTG+GGG - chr4_2:52395403-52395422 Msa0606260:intron 40.0%
GCTGCTGCCAGTATTATAAA+TGG - chr4_2:52395442-52395461 Msa0606260:intron 40.0%
TGTGCAGATACTTAGGCTAT+GGG - chr4_2:52395482-52395501 Msa0606260:intron 40.0%
!!! TTACACCCCTTCTTGTTTTC+AGG - chr4_2:52395804-52395823 Msa0606260:intron 40.0%
GCAACAACCTGAAAACAAGA+AGG + chr4_2:52395814-52395833 None:intergenic 40.0%
AGCCAAACTCTAAACGAGAA+GGG - chr4_2:52395847-52395866 Msa0606260:intron 40.0%
! ATCCCTTCTCGTTTAGAGTT+TGG + chr4_2:52395852-52395871 None:intergenic 40.0%
AAATTCCTTCCCTGAAGGAA+TGG + chr4_2:52395893-52395912 None:intergenic 40.0%
GAAAATTTGACAGACAGCGA+AGG + chr4_2:52396157-52396176 None:intergenic 40.0%
GTATGGAGTAAATCGGAGTT+TGG - chr4_2:52396306-52396325 Msa0606260:intron 40.0%
CTAACTATTGGAGCTGTACT+CGG - chr4_2:52396606-52396625 Msa0606260:CDS 40.0%
TAACTATTGGAGCTGTACTC+GGG - chr4_2:52396607-52396626 Msa0606260:CDS 40.0%
TTGTTGGAACATCTGTTCCT+TGG - chr4_2:52396643-52396662 Msa0606260:intron 40.0%
TAATTCAAGAACTGACCTCC+TGG + chr4_2:52396707-52396726 None:intergenic 40.0%
GGAATTAAGGCTTCTGTTAG+TGG - chr4_2:52396762-52396781 Msa0606260:intron 40.0%
CGTTCTACTAGACCATTACT+TGG - chr4_2:52396971-52396990 Msa0606260:intron 40.0%
!! ATTAGGCTTTTCAAGAGGCT+TGG + chr4_2:52397032-52397051 None:intergenic 40.0%
TACGTTTCACATAGGTTCCA+TGG - chr4_2:52397051-52397070 Msa0606260:intron 40.0%
TGTAATAGCCTTTGCACTTG+AGG - chr4_2:52397104-52397123 Msa0606260:intron 40.0%
GCGCCTAACTCTTAACTATT+TGG - chr4_2:52397177-52397196 Msa0606260:intron 40.0%
!! CTTTTAGGAGAACTGGATCT+TGG + chr4_2:52397219-52397238 None:intergenic 40.0%
AGATCTGATACCCACTTGTT+GGG + chr4_2:52397600-52397619 None:intergenic 40.0%
AAGATCTGATACCCACTTGT+TGG + chr4_2:52397601-52397620 None:intergenic 40.0%
! TTAGGAGGCGTATTTCGTTA+GGG - chr4_2:52397697-52397716 Msa0606260:intron 40.0%
TGTAACAACGGTGCAAGTAT+AGG - chr4_2:52397726-52397745 Msa0606260:intron 40.0%
GGATGTGAAACTTACACTTG+AGG - chr4_2:52397747-52397766 Msa0606260:intron 40.0%
CTATATTTGCTTATGCAGGC+TGG - chr4_2:52398024-52398043 Msa0606260:intron 40.0%
!!! ACAACTTTTCCTTGGTTTGC+TGG - chr4_2:52398117-52398136 Msa0606260:intron 40.0%
GATCTGCATCGAGGTAAATT+GGG + chr4_2:52398182-52398201 None:intergenic 40.0%
CAGATCCTATCTAGCAGATA+TGG - chr4_2:52398196-52398215 Msa0606260:intron 40.0%
GCAAACCATATCTGCTAGAT+AGG + chr4_2:52398204-52398223 None:intergenic 40.0%
! TCTAGCAGATATGGTTTGCA+AGG - chr4_2:52398205-52398224 Msa0606260:CDS 40.0%
TTTCCCTTGCTGGATTTCAA+TGG - chr4_2:52398236-52398255 Msa0606260:CDS 40.0%
TTCCCTTGCTGGATTTCAAT+GGG - chr4_2:52398237-52398256 Msa0606260:CDS 40.0%
TACCCATTGAAATCCAGCAA+GGG + chr4_2:52398242-52398261 None:intergenic 40.0%
TTACCCATTGAAATCCAGCA+AGG + chr4_2:52398243-52398262 None:intergenic 40.0%
TTGCTGGATTTCAATGGGTA+AGG - chr4_2:52398242-52398261 Msa0606260:CDS 40.0%
AAATGCCATTGGGAGATAGA+AGG + chr4_2:52398371-52398390 None:intergenic 40.0%
! TCAACTTTTGCAGCTCATAC+TGG + chr4_2:52398413-52398432 None:intergenic 40.0%
ATTCAGTACTCGGAAACTAC+AGG - chr4_2:52398560-52398579 Msa0606260:CDS 40.0%
GAGTTGTATCGGAAACTAAG+CGG - chr4_2:52398587-52398606 Msa0606260:CDS 40.0%
AGTTGTATCGGAAACTAAGC+GGG - chr4_2:52398588-52398607 Msa0606260:CDS 40.0%
AAGATATATGTTCAAGGCGG+TGG + chr4_2:52398641-52398660 None:intergenic 40.0%
TGCCACTGGGTATAGTTATT+TGG - chr4_2:52398678-52398697 Msa0606260:CDS 40.0%
! TGACTTGTAAGGTAGGAATG+TGG - chr4_2:52398788-52398807 Msa0606260:CDS 40.0%
TGTGTTCTTCTTGAGAAGGG+GGG + chr4_2:52392490-52392509 None:intergenic 45.0%
GCATTATTACATCCTCCAGC+CGG - chr4_2:52392532-52392551 Msa0606260:three_prime_UTR 45.0%
GATACTGCTGTTGTTGGTCA+AGG - chr4_2:52392774-52392793 Msa0606260:CDS 45.0%
! TGCTACTGCACTTGCTAAAC+AGG - chr4_2:52392977-52392996 Msa0606260:CDS 45.0%
!! GATAGTTGGTAGTCTCACAC+TGG - chr4_2:52393064-52393083 Msa0606260:intron 45.0%
GTAATGTAGTCGTTGCTCGT+TGG - chr4_2:52393281-52393300 Msa0606260:intron 45.0%
! CGTTGCTCGTTGGTTAGTAA+TGG - chr4_2:52393291-52393310 Msa0606260:intron 45.0%
! ATGATCCACCCCAGTGTTTT+AGG + chr4_2:52393451-52393470 None:intergenic 45.0%
TGATGTCCAACTCACTTGTG+TGG + chr4_2:52393493-52393512 None:intergenic 45.0%
TTTGGGGGTTTAAGAAGGGA+AGG - chr4_2:52393539-52393558 Msa0606260:intron 45.0%
TTGGGGGTTTAAGAAGGGAA+GGG - chr4_2:52393540-52393559 Msa0606260:intron 45.0%
GAACGAGAAAGTGGGATATG+TGG - chr4_2:52393580-52393599 Msa0606260:intron 45.0%
GAGAAAGTGGGATATGTGGA+GGG - chr4_2:52393584-52393603 Msa0606260:intron 45.0%
TGGGGAAACTTTGCACTATG+AGG + chr4_2:52393645-52393664 None:intergenic 45.0%
GATAAAGGAATTGGAGGTCG+TGG + chr4_2:52393919-52393938 None:intergenic 45.0%
! CTTTAGGTTCTGTTTGGGAG+GGG + chr4_2:52393991-52394010 None:intergenic 45.0%
! GCTTTAGGTTCTGTTTGGGA+GGG + chr4_2:52393992-52394011 None:intergenic 45.0%
! TGCTTTAGGTTCTGTTTGGG+AGG + chr4_2:52393993-52394012 None:intergenic 45.0%
!! TATTGGGTTAGCATGTGGCT+TGG - chr4_2:52394355-52394374 Msa0606260:CDS 45.0%
CAATTCATCAGACATGGGGT+AGG + chr4_2:52394507-52394526 None:intergenic 45.0%
CGCAGCTAATACTTATGTCC+AGG - chr4_2:52394582-52394601 Msa0606260:CDS 45.0%
! ATTAGATACGAGGGTTGGCA+TGG - chr4_2:52394885-52394904 Msa0606260:CDS 45.0%
!! GCATGGCCTTGTTTACTTGT+TGG - chr4_2:52394902-52394921 Msa0606260:CDS 45.0%
CTGTGCAGATACTTAGGCTA+TGG - chr4_2:52395481-52395500 Msa0606260:intron 45.0%
TACTTAGGCTATGGGATTGC+TGG - chr4_2:52395490-52395509 Msa0606260:intron 45.0%
ACTTAGGCTATGGGATTGCT+GGG - chr4_2:52395491-52395510 Msa0606260:intron 45.0%
! CGAGTTTGTTCGGCATACTT+GGG + chr4_2:52395539-52395558 None:intergenic 45.0%
! ACGAGTTTGTTCGGCATACT+TGG + chr4_2:52395540-52395559 None:intergenic 45.0%
GAGCCAAACTCTAAACGAGA+AGG - chr4_2:52395846-52395865 Msa0606260:intron 45.0%
TTTGCCTTCACCATTCCTTC+AGG - chr4_2:52395880-52395899 Msa0606260:intron 45.0%
TTGCCTTCACCATTCCTTCA+GGG - chr4_2:52395881-52395900 Msa0606260:intron 45.0%
GACAGAAATTCCTTCCCTGA+AGG + chr4_2:52395898-52395917 None:intergenic 45.0%
! GATTGAGCAGTTTGGGATAG+AGG + chr4_2:52396268-52396287 None:intergenic 45.0%
!!! CTGTACTCGGGTTGCTTTTT+GGG - chr4_2:52396619-52396638 Msa0606260:CDS 45.0%
!!! GGGTTGCTTTTTGGGATTGT+TGG - chr4_2:52396627-52396646 Msa0606260:CDS 45.0%
ACCTGATCAGATGGTTATCC+AGG - chr4_2:52396686-52396705 Msa0606260:intron 45.0%
TCCTGGATAACCATCTGATC+AGG + chr4_2:52396690-52396709 None:intergenic 45.0%
TGATCAGATGGTTATCCAGG+AGG - chr4_2:52396689-52396708 Msa0606260:intron 45.0%
! TTTTAGCGCCTCAAGTGCAA+AGG + chr4_2:52397115-52397134 None:intergenic 45.0%
! TGCACTTGAGGCGCTAAAAA+AGG - chr4_2:52397116-52397135 Msa0606260:intron 45.0%
! ATCTGATACCCACTTGTTGG+GGG + chr4_2:52397598-52397617 None:intergenic 45.0%
! GATCTGATACCCACTTGTTG+GGG + chr4_2:52397599-52397618 None:intergenic 45.0%
! CAGATCTTGTTTCAGCTTGG+CGG - chr4_2:52397613-52397632 Msa0606260:intron 45.0%
! AGATCTTGTTTCAGCTTGGC+GGG - chr4_2:52397614-52397633 Msa0606260:intron 45.0%
! GTCTTTCTAGCGGTGTAGTT+AGG - chr4_2:52397679-52397698 Msa0606260:intron 45.0%
! TTTCTAGCGGTGTAGTTAGG+AGG - chr4_2:52397682-52397701 Msa0606260:intron 45.0%
! GTTAGGAGGCGTATTTCGTT+AGG - chr4_2:52397696-52397715 Msa0606260:intron 45.0%
! ACACTTGAGGGGCATATTCT+TGG - chr4_2:52397760-52397779 Msa0606260:intron 45.0%
! CACTTGAGGGGCATATTCTT+GGG - chr4_2:52397761-52397780 Msa0606260:intron 45.0%
TTCTTGGGTTCAAGTGTGAG+TGG - chr4_2:52397776-52397795 Msa0606260:intron 45.0%
ACAAGAACCAACATGCAACC+TGG + chr4_2:52397997-52398016 None:intergenic 45.0%
ATTTGCTTATGCAGGCTGGA+CGG - chr4_2:52398028-52398047 Msa0606260:intron 45.0%
CTATGTACACCAGCAAACCA+AGG + chr4_2:52398129-52398148 None:intergenic 45.0%
GGATCTGCATCGAGGTAAAT+TGG + chr4_2:52398183-52398202 None:intergenic 45.0%
! GATATGGTTTGCAAGGCTGT+TGG - chr4_2:52398212-52398231 Msa0606260:CDS 45.0%
GGATTTCAATGGGTAAGGCT+CGG - chr4_2:52398247-52398266 Msa0606260:CDS 45.0%
!! CTACAGGTGCTGAGTTGTAT+CGG - chr4_2:52398576-52398595 Msa0606260:CDS 45.0%
GTTGTATCGGAAACTAAGCG+GGG - chr4_2:52398589-52398608 Msa0606260:CDS 45.0%
!!! ATTGTTTTATTTTTTTTAAA+TGG - chr4_2:52393838-52393857 Msa0606260:intron 5.0%
!! ATATTATAATTTATAACTAT+TGG - chr4_2:52395333-52395352 Msa0606260:CDS 5.0%
!! TATTATAATTTATAACTATT+GGG - chr4_2:52395334-52395353 Msa0606260:CDS 5.0%
! GGAGGAAATGAAGAGGTACG+TGG + chr4_2:52392464-52392483 None:intergenic 50.0%
TCTTCTTGAGAAGGGGGGAT+GGG + chr4_2:52392485-52392504 None:intergenic 50.0%
TTCTTCTTGAGAAGGGGGGA+TGG + chr4_2:52392486-52392505 None:intergenic 50.0%
ATTACATCCTCCAGCCGGAA+CGG - chr4_2:52392537-52392556 Msa0606260:three_prime_UTR 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG - chr4_2:52392724-52392743 Msa0606260:three_prime_UTR 50.0%
AGATGTGGGTGTGACCTTGT+TGG - chr4_2:52393412-52393431 Msa0606260:intron 50.0%
GATGTGGGTGTGACCTTGTT+GGG - chr4_2:52393413-52393432 Msa0606260:intron 50.0%
TGTGACCTTGTTGGGACTTC+TGG - chr4_2:52393421-52393440 Msa0606260:intron 50.0%
GTGACCTTGTTGGGACTTCT+GGG - chr4_2:52393422-52393441 Msa0606260:intron 50.0%
TGACCTTGTTGGGACTTCTG+GGG - chr4_2:52393423-52393442 Msa0606260:intron 50.0%
! TTCTGGGGAGCCTAAAACAC+TGG - chr4_2:52393438-52393457 Msa0606260:intron 50.0%
TCTGGGGAGCCTAAAACACT+GGG - chr4_2:52393439-52393458 Msa0606260:intron 50.0%
ACTGGGGTGGATCATCACAT+TGG - chr4_2:52393456-52393475 Msa0606260:intron 50.0%
GAGCAACCACACAAGTGAGT+TGG - chr4_2:52393484-52393503 Msa0606260:intron 50.0%
AAGAAGGGAAGGGAGAGCTT+TGG - chr4_2:52393550-52393569 Msa0606260:intron 50.0%
CGAGAAAGTGGGATATGTGG+AGG - chr4_2:52393583-52393602 Msa0606260:intron 50.0%
TGGGATATGTGGAGGGCTTT+AGG - chr4_2:52393591-52393610 Msa0606260:intron 50.0%
!! GATATGTGGAGGGCTTTAGG+AGG - chr4_2:52393594-52393613 Msa0606260:intron 50.0%
CACCCAACAATGGTAAGCTG+AGG - chr4_2:52394114-52394133 Msa0606260:intron 50.0%
CTTAGGCTATGGGATTGCTG+GGG - chr4_2:52395492-52395511 Msa0606260:intron 50.0%
CTTCCCTGAAGGAATGGTGA+AGG + chr4_2:52395887-52395906 None:intergenic 50.0%
CTTCACCATTCCTTCAGGGA+AGG - chr4_2:52395885-52395904 Msa0606260:intron 50.0%
!!! GCTGTACTCGGGTTGCTTTT+TGG - chr4_2:52396618-52396637 Msa0606260:CDS 50.0%
ATACCAGCAATGTTCCCTCC+AGG + chr4_2:52396872-52396891 None:intergenic 50.0%
! GATCTTGTTTCAGCTTGGCG+GGG - chr4_2:52397615-52397634 Msa0606260:intron 50.0%
! ATCTTGTTTCAGCTTGGCGG+GGG - chr4_2:52397616-52397635 Msa0606260:intron 50.0%
TCATGACTGTTGGGGAGTCT+GGG + chr4_2:52397954-52397973 None:intergenic 50.0%
TTTGCTTATGCAGGCTGGAC+GGG - chr4_2:52398029-52398048 Msa0606260:intron 50.0%
GCTAGATAGGATCTGCATCG+AGG + chr4_2:52398191-52398210 None:intergenic 50.0%
TCGGAAACTAAGCGGGGAAA+TGG - chr4_2:52398595-52398614 Msa0606260:CDS 50.0%
CGGAAACTAAGCGGGGAAAT+GGG - chr4_2:52398596-52398615 Msa0606260:CDS 50.0%
GGAAACTAAGCGGGGAAATG+GGG - chr4_2:52398597-52398616 Msa0606260:CDS 50.0%
GAAACTAAGCGGGGAAATGG+GGG - chr4_2:52398598-52398617 Msa0606260:CDS 50.0%
GGGGATGGGAGGAAATGAAG+AGG + chr4_2:52392471-52392490 None:intergenic 55.0%
AGAACTCGAAGCGACCGTTC+CGG + chr4_2:52392554-52392573 None:intergenic 55.0%
CTGGGGAGCCTAAAACACTG+GGG - chr4_2:52393440-52393459 Msa0606260:intron 55.0%
AGGTTCTGTTTGGGAGGGGA+TGG + chr4_2:52393987-52394006 None:intergenic 55.0%
! TTTGGTGCAACAACGCTCGC+AGG - chr4_2:52394401-52394420 Msa0606260:intron 55.0%
GGATTCTTGGGGACCCTTGA+AGG - chr4_2:52395414-52395433 Msa0606260:intron 55.0%
TTGGGGACCCTTGAAGGCTT+TGG - chr4_2:52395420-52395439 Msa0606260:intron 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG + chr4_2:52395430-52395449 None:intergenic 55.0%
ATGGTCACACCCGCAACTGT+TGG - chr4_2:52396846-52396865 Msa0606260:CDS 55.0%
! ACCCACTTGTTGGGGGAGTA+CGG + chr4_2:52397591-52397610 None:intergenic 55.0%
GGGGAGTGACGAGCAATAAC+AGG + chr4_2:52397934-52397953 None:intergenic 55.0%
CATGACTGTTGGGGAGTCTG+GGG + chr4_2:52397953-52397972 None:intergenic 55.0%
GTCATGACTGTTGGGGAGTC+TGG + chr4_2:52397955-52397974 None:intergenic 55.0%
!!! GGCTGTTGGTTTTCCCTTGC+TGG - chr4_2:52398226-52398245 Msa0606260:CDS 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG + chr4_2:52398361-52398380 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG + chr4_2:52398362-52398381 None:intergenic 55.0%
CTGCGCCTTCTATCTCCCAA+TGG - chr4_2:52398363-52398382 Msa0606260:intron 55.0%
!! CGATCAAGTGTGGTGCCACT+GGG - chr4_2:52398665-52398684 Msa0606260:CDS 55.0%
TCTTGAGAAGGGGGGATGGG+AGG + chr4_2:52392482-52392501 None:intergenic 60.0%
GCTCCCCAGAAGTCCCAACA+AGG + chr4_2:52393429-52393448 None:intergenic 60.0%
GGGAGCCTAAAACACTGGGG+TGG - chr4_2:52393443-52393462 Msa0606260:intron 60.0%
!! GTGGAGGGCTTTAGGAGGTG+AGG - chr4_2:52393599-52393618 Msa0606260:intron 60.0%
GGAGGTCGTGGGTTCAAACC+TGG + chr4_2:52393907-52393926 None:intergenic 60.0%
GGTCGATCGCCCAAAGTGCA+AGG - chr4_2:52394924-52394943 Msa0606260:CDS 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG + chr4_2:52395431-52395450 None:intergenic 60.0%
ATGGGATTGCTGGGGCTGCA+TGG - chr4_2:52395500-52395519 Msa0606260:intron 60.0%
TGGGATTGCTGGGGCTGCAT+GGG - chr4_2:52395501-52395520 Msa0606260:intron 60.0%
! TGGGGCTGCATGGGCTACAT+TGG - chr4_2:52395510-52395529 Msa0606260:intron 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG - chr4_2:52396577-52396596 Msa0606260:intron 60.0%
TCCCTCCAGGCCAACAGTTG+CGG + chr4_2:52396859-52396878 None:intergenic 60.0%
TGGCCTGGAGGGAACATTGC+TGG - chr4_2:52396866-52396885 Msa0606260:CDS 60.0%
TCCCGTACTCCCCCAACAAG+TGG - chr4_2:52397586-52397605 Msa0606260:intron 60.0%
! CCCACTTGTTGGGGGAGTAC+GGG + chr4_2:52397590-52397609 None:intergenic 60.0%
CCCGTACTCCCCCAACAAGT+GGG - chr4_2:52397587-52397606 Msa0606260:intron 60.0%
AAGCGGGGAAATGGGGGATG+TGG - chr4_2:52398604-52398623 Msa0606260:CDS 60.0%
AGCGGGGAAATGGGGGATGT+GGG - chr4_2:52398605-52398624 Msa0606260:CDS 60.0%
!! GCGATCAAGTGTGGTGCCAC+TGG - chr4_2:52398664-52398683 Msa0606260:CDS 60.0%
CACACCCGCAACTGTTGGCC+TGG - chr4_2:52396851-52396870 Msa0606260:CDS 65.0%
! ACCCGCAACTGTTGGCCTGG+AGG - chr4_2:52396854-52396873 Msa0606260:CDS 65.0%
CCCTCCAGGCCAACAGTTGC+GGG + chr4_2:52396858-52396877 None:intergenic 65.0%
! CCCGCAACTGTTGGCCTGGA+GGG - chr4_2:52396855-52396874 Msa0606260:CDS 65.0%
GAAGCGACCGTTCCGGCTGG+AGG + chr4_2:52392547-52392566 None:intergenic 70.0%
CTCGAAGCGACCGTTCCGGC+TGG + chr4_2:52392550-52392569 None:intergenic 70.0%
! AGCTTGGCGGGGGAGCGTGA+GGG - chr4_2:52397626-52397645 Msa0606260:intron 70.0%
! CAGCTTGGCGGGGGAGCGTG+AGG - chr4_2:52397625-52397644 Msa0606260:intron 75.0%
! GCTTGGCGGGGGAGCGTGAG+GGG - chr4_2:52397627-52397646 Msa0606260:intron 75.0%
! CTTGGCGGGGGAGCGTGAGG+GGG - chr4_2:52397628-52397647 Msa0606260:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52392288 52398911 52392288 ID=Msa0606260;Name=Msa0606260
chr4_2 mRNA 52392288 52398911 52392288 ID=Msa0606260-mRNA-1;Parent=Msa0606260;Name=Msa0606260-mRNA-1;_AED=0.32;_eAED=0.32;_QI=24|1|1|1|1|1|14|468|574
chr4_2 exon 52392288 52392857 52392288 ID=Msa0606260-mRNA-1:exon:12865;Parent=Msa0606260-mRNA-1
chr4_2 exon 52392941 52393000 52392941 ID=Msa0606260-mRNA-1:exon:12864;Parent=Msa0606260-mRNA-1
chr4_2 exon 52393086 52393157 52393086 ID=Msa0606260-mRNA-1:exon:12863;Parent=Msa0606260-mRNA-1
chr4_2 exon 52394312 52394389 52394312 ID=Msa0606260-mRNA-1:exon:12862;Parent=Msa0606260-mRNA-1
chr4_2 exon 52394489 52394617 52394489 ID=Msa0606260-mRNA-1:exon:12861;Parent=Msa0606260-mRNA-1
chr4_2 exon 52394866 52394976 52394866 ID=Msa0606260-mRNA-1:exon:12860;Parent=Msa0606260-mRNA-1
chr4_2 exon 52395082 52395150 52395082 ID=Msa0606260-mRNA-1:exon:12859;Parent=Msa0606260-mRNA-1
chr4_2 exon 52395236 52395373 52395236 ID=Msa0606260-mRNA-1:exon:12858;Parent=Msa0606260-mRNA-1
chr4_2 exon 52395659 52395797 52395659 ID=Msa0606260-mRNA-1:exon:12857;Parent=Msa0606260-mRNA-1
chr4_2 exon 52396254 52396309 52396254 ID=Msa0606260-mRNA-1:exon:12856;Parent=Msa0606260-mRNA-1
chr4_2 exon 52396596 52396651 52396596 ID=Msa0606260-mRNA-1:exon:12855;Parent=Msa0606260-mRNA-1
chr4_2 exon 52396777 52396885 52396777 ID=Msa0606260-mRNA-1:exon:12854;Parent=Msa0606260-mRNA-1
chr4_2 exon 52398201 52398295 52398201 ID=Msa0606260-mRNA-1:exon:12853;Parent=Msa0606260-mRNA-1
chr4_2 exon 52398377 52398911 52398377 ID=Msa0606260-mRNA-1:exon:12852;Parent=Msa0606260-mRNA-1
chr4_2 five_prime_UTR 52398888 52398911 52398888 ID=Msa0606260-mRNA-1:five_prime_utr;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52398377 52398887 52398377 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52398201 52398295 52398201 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52396777 52396885 52396777 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52396596 52396651 52396596 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52396254 52396309 52396254 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52395659 52395797 52395659 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52395236 52395373 52395236 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52395082 52395150 52395082 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52394866 52394976 52394866 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52394489 52394617 52394489 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52394312 52394389 52394312 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52393086 52393157 52393086 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52392941 52393000 52392941 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 CDS 52392756 52392857 52392756 ID=Msa0606260-mRNA-1:cds;Parent=Msa0606260-mRNA-1
chr4_2 three_prime_UTR 52392288 52392755 52392288 ID=Msa0606260-mRNA-1:three_prime_utr;Parent=Msa0606260-mRNA-1
Gene Sequence

>Msa0606260

ATGTTACAGACCACTCGTTTTCTTTCTCTTTCCTTTTCCGTCATCTTCCCAATTTTTTTTTCTGTTTTCTTTTCTTTCACTTCGAAGAAAACAAAAATGGCAGAAAAACTTTCACTAAACTTCAATCACACTTCACTACACTTGAATCGCCACGTACCTCTTCATTTCCTCCCATCCCCCCTTCTCAAGAAGAACACATCTATCCATTTAACAAAACAATGCATTATTACATCCTCCAGCCGGAACGGTCGCTTCGAGTTCTTAACAGCTTGCTTAGTTCAAAATAACGATGCCATACATGAATATGAAGAAAAAGTTCAAATCGACGAGTGTGTTGAAGAAGAAGAAGAAGAAGTGAAGGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATTGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCATTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTATTTGGGCTACTCGTTCATGTTTTTGTCGATTGCTACTTCAAATATGGTTGCTACTGCACTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTTGGCGATGCTTTTTTTCACAAGATTATTTGGTGCAACAACGCTCGCAGCTTTTACTGGACCAAAGAATGTACATATAGTACCCGCAGCTAATACTTATGTCCAGATACGAGGGTTGGCATGGCCTTGTTTACTTGTTGGGTCGATCGCCCAAAGTGCAAGTCTTGGTATGAAGGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAATTCTGTGCAGATACTTAGGCTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTTGTTGCGGCGTATATGATGAGCCAAACTCTAAACGAGAAGGGATACAATGCATTTGCCTTCACCATTCCTTCAGGGAAGGAATTTCTGTCAATATTAAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGCTTTCTACTCTCTACTTATATATTTTGCTACATCAATGGGTACAAATAAAATGGCTGCTCATCAAGTCATGCTTCAGATCTACATGTTATGCACAATATGTGGTGAACCTCTATCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGTAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTACTCGGGTTGCTTTTTGGGATTGTTGGAACATCTGTTCCTTGGTTATTCCCCTACATTTTTACACCTGATCAGATGGTTATCCAGGAGATGCATAAGATACTGATTCCATACTTTTTAGCGCTAATGGTCACACCCGCAACTGTTGGCCTGGAGGGAACATTGCTGGCTGGACGGGATCTTAGATTTATAAGCTTGTCAATGACTGGATGCTTTTGTTTGAATGGTCTAGTATTATTGATCCTATCTAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCCCTTGCTGGATTTCAATGGGTTCGGTTTTCATCAGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTATGAGCTGCAAAAGTTGAAGACTGCATAG

Protein sequence

>Msa0606260

MLQTTRFLSLSFSVIFPIFFSVFFSFTSKKTKMAEKLSLNFNHTSLHLNRHVPLHFLPSPLLKKNTSIHLTKQCIITSSSRNGRFEFLTACLVQNNDAIHEYEEKVQIDECVEEEEEEVKELVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLACGLAMLFFTRLFGATTLAAFTGPKNVHIVPAANTYVQIRGLAWPCLLVGSIAQSASLGMKDSWGPLKALAAASIINGIGDIILCRYLGYGIAGAAWATLASQVVAAYMMSQTLNEKGYNAFAFTIPSGKEFLSILSLAAPVFVTLMLKVAFYSLLIYFATSMGTNKMAAHQVMLQIYMLCTICGEPLSQTAQSFMPELMYGVNRSLVKARSLLRSLLTIGAVLGLLFGIVGTSVPWLFPYIFTPDQMVIQEMHKILIPYFLALMVTPATVGLEGTLLAGRDLRFISLSMTGCFCLNGLVLLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQYELQKLKTA*