AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518150 MtrunA17_Chr3g0130201 89.091 165 12 1 1 165 9 167 3.13e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518150 AT1G74880.1 58.788 165 61 1 1 165 1 158 1.66e-62 190

Find 59 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACTACCGTCAATTATT+TGG 0.065833 3_4:-70001697 Msa0518150:intron
GGTTTCTTAGGAAGAGTCTT+AGG 0.205905 3_4:+70002704 None:intergenic
GTAGTCTAATCCTTTGTAAT+AGG 0.224129 3_4:+70002400 None:intergenic
CTGGAATAAACAGGTTTCTT+AGG 0.242562 3_4:+70002692 None:intergenic
TCATGGCCGAAAACATTATC+TGG 0.263318 3_4:+70001656 None:intergenic
ATTGTGTCTCTCTTAATTAA+TGG 0.294241 3_4:-70002933 Msa0518150:exon
ATGACTACCGTCAATTATTT+GGG 0.383785 3_4:-70001696 Msa0518150:intron
CTTATCTCTAGTTGTATGTA+TGG 0.394151 3_4:-70002957 Msa0518150:five_prime_UTR
CTTGACTCACTGGAATAAAC+AGG 0.396415 3_4:+70002683 None:intergenic
GATATGCGTATATTTGAAAC+AGG 0.408664 3_4:-70002260 Msa0518150:CDS
TCTTGAACTGCACGAATCAA+TGG 0.413571 3_4:+70002818 None:intergenic
GTTTCTTAGGAAGAGTCTTA+GGG 0.440236 3_4:+70002705 None:intergenic
TGCTTAATTCTCAGGTTGCA+TGG 0.442545 3_4:-70002047 Msa0518150:intron
GCAGTTCAAGACGGTGAACC+AGG 0.447486 3_4:-70002806 Msa0518150:CDS
TAGTCTAATCCTTTGTAATA+GGG 0.459657 3_4:+70002401 None:intergenic
GCATCAGAGCTCTTAGTTTG+TGG 0.477417 3_4:+70002770 None:intergenic
TCTTACAATACTAGACAAAC+AGG 0.486958 3_4:+70001794 None:intergenic
TCACACAGCTCAACTAAAGA+TGG 0.495213 3_4:+70001728 None:intergenic
TTTGAGAAATGGGAAAGAGA+AGG 0.496635 3_4:+70002875 None:intergenic
CTTGAACTGCACGAATCAAT+GGG 0.503362 3_4:+70002819 None:intergenic
GGAAGCCAAGCTGGAGCAGT+GGG 0.508111 3_4:+70002015 None:intergenic
AGGAAGAGTCTTAGGGGCAG+TGG 0.518025 3_4:+70002712 None:intergenic
ATGGGAAAGAGAAGGAAAGG+AGG 0.524817 3_4:+70002883 None:intergenic
GAAATGGGAAAGAGAAGGAA+AGG 0.530112 3_4:+70002880 None:intergenic
CACACAGCTCAACTAAAGAT+GGG 0.537591 3_4:+70001729 None:intergenic
GCTTAATTCTCAGGTTGCAT+GGG 0.543172 3_4:-70002046 Msa0518150:intron
TCCTACATACATGCTTATCA+AGG 0.544432 3_4:-70001995 Msa0518150:intron
AGGAAGCCAAGCTGGAGCAG+TGG 0.544685 3_4:+70002014 None:intergenic
GAGTCCCCACTGCTCCAGCT+TGG 0.545534 3_4:-70002020 Msa0518150:CDS
AATTTGTGGACAGTGAAGAA+AGG 0.549691 3_4:-70002583 Msa0518150:intron
AATTCTCAGGTTGCATGGGT+AGG 0.550094 3_4:-70002042 Msa0518150:intron
CATAAATACAATGATGGTCA+TGG 0.552762 3_4:+70001639 None:intergenic
TCTAATCCTTTGTAATAGGG+TGG 0.556199 3_4:+70002404 None:intergenic
TGAAGAAAGGTCAGATTGTG+AGG 0.558487 3_4:-70002570 Msa0518150:CDS
TAATTGTCCCAAATAATTGA+CGG 0.560812 3_4:+70001689 None:intergenic
ATGTATGTAGGAAGCCAAGC+TGG 0.563654 3_4:+70002006 None:intergenic
GCTCAACTAAAGATGGGGTA+TGG 0.566248 3_4:+70001735 None:intergenic
GGGCACCCACCCTATTACAA+AGG 0.572065 3_4:-70002410 Msa0518150:CDS
TCAGATTGTGAGGGTGGACA+AGG 0.576125 3_4:-70002560 Msa0518150:CDS
GAAAGGTCAGATTGTGAGGG+TGG 0.585375 3_4:-70002566 Msa0518150:CDS
CATGGCCGAAAACATTATCT+GGG 0.595369 3_4:+70001657 None:intergenic
CTAATCCTTTGTAATAGGGT+GGG 0.595783 3_4:+70002405 None:intergenic
CAGTTCAAGACGGTGAACCA+GGG 0.597426 3_4:-70002805 Msa0518150:CDS
AGCACTACTAGAGGAGGCTG+AGG 0.602396 3_4:+70002745 None:intergenic
ATGGGGTATGGTGTCTCTGA+TGG 0.613977 3_4:+70001747 None:intergenic
TTGATTCGTGCAGTTCAAGA+CGG 0.616062 3_4:-70002815 Msa0518150:CDS
TTTGTTTGTTTACCTCACCA+CGG 0.617430 3_4:+70002366 None:intergenic
AGTTCAAGACGGTGAACCAG+GGG 0.628235 3_4:-70002804 Msa0518150:CDS
ACCTTGATAAGCATGTATGT+AGG 0.632174 3_4:+70001994 None:intergenic
GAATCAATGGGAAAGAAGAA+CGG 0.633893 3_4:+70002831 None:intergenic
TTTCTTAGGAAGAGTCTTAG+GGG 0.641863 3_4:+70002706 None:intergenic
GAAGAAAGGTCAGATTGTGA+GGG 0.659835 3_4:-70002569 Msa0518150:CDS
ACACAGCTCAACTAAAGATG+GGG 0.678819 3_4:+70001730 None:intergenic
AGACTGAGCACTACTAGAGG+AGG 0.683341 3_4:+70002739 None:intergenic
GACTACATTTACGAAGACCG+TGG 0.695548 3_4:-70002383 Msa0518150:CDS
TGAAGACTGAGCACTACTAG+AGG 0.698555 3_4:+70002736 None:intergenic
CATTTACGAAGACCGTGGTG+AGG 0.713150 3_4:-70002378 Msa0518150:intron
GTTCAAGACGGTGAACCAGG+GGG 0.724086 3_4:-70002803 Msa0518150:CDS
GAAGCCAAGCTGGAGCAGTG+GGG 0.758823 3_4:+70002016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGTTTTTTTTTTTTTG+AGG - chr3_4:70002970-70002989 Msa0518150:five_prime_UTR 10.0%
!!! TTATGTTTTTTTTTTTTTGA+GGG - chr3_4:70002971-70002990 Msa0518150:five_prime_UTR 10.0%
!!! TTTATGTTTTTTTTTTTTTG+AGG - chr3_4:70002970-70002989 Msa0518150:five_prime_UTR 10.0%
!!! TTATGTTTTTTTTTTTTTGA+GGG - chr3_4:70002971-70002990 Msa0518150:five_prime_UTR 10.0%
!!! TATTCATTTTTGTTAATTTG+TGG - chr3_4:70001995-70002014 Msa0518150:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG + chr3_4:70002254-70002273 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG + chr3_4:70002432-70002451 None:intergenic 15.0%
!! AAAAAACATAAATACAATGA+TGG + chr3_4:70002962-70002981 None:intergenic 15.0%
!!! TATTCATTTTTGTTAATTTG+TGG - chr3_4:70001995-70002014 Msa0518150:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG + chr3_4:70002254-70002273 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG + chr3_4:70002432-70002451 None:intergenic 15.0%
!! AAAAAACATAAATACAATGA+TGG + chr3_4:70002962-70002981 None:intergenic 15.0%
! ATTGTGTCTCTCTTAATTAA+TGG - chr3_4:70001659-70001678 Msa0518150:three_prime_UTR 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG + chr3_4:70001730-70001749 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG + chr3_4:70001731-70001750 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG - chr3_4:70001730-70001749 Msa0518150:intron 25.0%
! AGATACTGAAAAATTAACCT+TGG + chr3_4:70002155-70002174 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG - chr3_4:70002161-70002180 Msa0518150:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG - chr3_4:70002162-70002181 Msa0518150:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG + chr3_4:70002194-70002213 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG - chr3_4:70002304-70002323 Msa0518150:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG - chr3_4:70002464-70002483 Msa0518150:intron 25.0%
! TAATTGTCCCAAATAATTGA+CGG + chr3_4:70002906-70002925 None:intergenic 25.0%
! ATTGTGTCTCTCTTAATTAA+TGG - chr3_4:70001659-70001678 Msa0518150:three_prime_UTR 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG + chr3_4:70001730-70001749 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG + chr3_4:70001731-70001750 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG - chr3_4:70001730-70001749 Msa0518150:intron 25.0%
! AGATACTGAAAAATTAACCT+TGG + chr3_4:70002155-70002174 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG - chr3_4:70002161-70002180 Msa0518150:intron 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG - chr3_4:70002162-70002181 Msa0518150:intron 25.0%
! TAGTCTAATCCTTTGTAATA+GGG + chr3_4:70002194-70002213 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG - chr3_4:70002304-70002323 Msa0518150:intron 25.0%
!! GTTTTCTATGATTCCAATTA+TGG - chr3_4:70002464-70002483 Msa0518150:intron 25.0%
! TAATTGTCCCAAATAATTGA+CGG + chr3_4:70002906-70002925 None:intergenic 25.0%
! AAGAAGATGACTCTTTTGTT+GGG + chr3_4:70001618-70001637 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG + chr3_4:70001619-70001638 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG - chr3_4:70001635-70001654 Msa0518150:three_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG + chr3_4:70002195-70002214 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG - chr3_4:70002332-70002351 Msa0518150:intron 30.0%
CTTCACAATGTTACCATAAT+TGG + chr3_4:70002480-70002499 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG - chr3_4:70002620-70002639 Msa0518150:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG + chr3_4:70002741-70002760 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG + chr3_4:70002801-70002820 None:intergenic 30.0%
AATGACTACCGTCAATTATT+TGG - chr3_4:70002895-70002914 Msa0518150:CDS 30.0%
ATGACTACCGTCAATTATTT+GGG - chr3_4:70002896-70002915 Msa0518150:CDS 30.0%
CATAAATACAATGATGGTCA+TGG + chr3_4:70002956-70002975 None:intergenic 30.0%
! AAGAAGATGACTCTTTTGTT+GGG + chr3_4:70001618-70001637 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG + chr3_4:70001619-70001638 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG - chr3_4:70001635-70001654 Msa0518150:three_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG + chr3_4:70002195-70002214 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG - chr3_4:70002332-70002351 Msa0518150:intron 30.0%
CTTCACAATGTTACCATAAT+TGG + chr3_4:70002480-70002499 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG - chr3_4:70002620-70002639 Msa0518150:intron 30.0%
CAACAAAAAAAGTAAGAGTG+AGG + chr3_4:70002741-70002760 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG + chr3_4:70002801-70002820 None:intergenic 30.0%
AATGACTACCGTCAATTATT+TGG - chr3_4:70002895-70002914 Msa0518150:CDS 30.0%
ATGACTACCGTCAATTATTT+GGG - chr3_4:70002896-70002915 Msa0518150:CDS 30.0%
CATAAATACAATGATGGTCA+TGG + chr3_4:70002956-70002975 None:intergenic 30.0%
TTTGAGAAATGGGAAAGAGA+AGG + chr3_4:70001720-70001739 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG + chr3_4:70001764-70001783 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG + chr3_4:70001889-70001908 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG + chr3_4:70001890-70001909 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG + chr3_4:70001903-70001922 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG - chr3_4:70002009-70002028 Msa0518150:CDS 35.0%
CTAATCCTTTGTAATAGGGT+GGG + chr3_4:70002190-70002209 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG + chr3_4:70002191-70002210 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG + chr3_4:70002229-70002248 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG - chr3_4:70002310-70002329 Msa0518150:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG - chr3_4:70002537-70002556 Msa0518150:CDS 35.0%
TCCTACATACATGCTTATCA+AGG - chr3_4:70002597-70002616 Msa0518150:intron 35.0%
ACCTTGATAAGCATGTATGT+AGG + chr3_4:70002601-70002620 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG + chr3_4:70002639-70002658 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG - chr3_4:70002930-70002949 Msa0518150:exon 35.0%
TTTGAGAAATGGGAAAGAGA+AGG + chr3_4:70001720-70001739 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG + chr3_4:70001764-70001783 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG + chr3_4:70001889-70001908 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG + chr3_4:70001890-70001909 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG + chr3_4:70001903-70001922 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG - chr3_4:70002009-70002028 Msa0518150:CDS 35.0%
CTAATCCTTTGTAATAGGGT+GGG + chr3_4:70002190-70002209 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG + chr3_4:70002191-70002210 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG + chr3_4:70002229-70002248 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG - chr3_4:70002310-70002329 Msa0518150:intron 35.0%
TGTACCATTGCTTAATTCTC+AGG - chr3_4:70002537-70002556 Msa0518150:CDS 35.0%
TCCTACATACATGCTTATCA+AGG - chr3_4:70002597-70002616 Msa0518150:intron 35.0%
ACCTTGATAAGCATGTATGT+AGG + chr3_4:70002601-70002620 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG + chr3_4:70002639-70002658 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG - chr3_4:70002930-70002949 Msa0518150:exon 35.0%
GAAATGGGAAAGAGAAGGAA+AGG + chr3_4:70001715-70001734 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG + chr3_4:70001776-70001795 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG + chr3_4:70001777-70001796 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG - chr3_4:70001777-70001796 Msa0518150:three_prime_UTR 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG + chr3_4:70001891-70001910 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG + chr3_4:70001912-70001931 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG + chr3_4:70001922-70001941 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG - chr3_4:70002022-70002041 Msa0518150:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG - chr3_4:70002023-70002042 Msa0518150:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG - chr3_4:70002111-70002130 Msa0518150:intron 40.0%
GGACTCAAATAACATGTCCA+AGG - chr3_4:70002135-70002154 Msa0518150:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG + chr3_4:70002544-70002563 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG - chr3_4:70002545-70002564 Msa0518150:CDS 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG - chr3_4:70002546-70002565 Msa0518150:CDS 40.0%
ACACAGCTCAACTAAAGATG+GGG + chr3_4:70002865-70002884 None:intergenic 40.0%
CACACAGCTCAACTAAAGAT+GGG + chr3_4:70002866-70002885 None:intergenic 40.0%
TCACACAGCTCAACTAAAGA+TGG + chr3_4:70002867-70002886 None:intergenic 40.0%
CATGGCCGAAAACATTATCT+GGG + chr3_4:70002938-70002957 None:intergenic 40.0%
TCATGGCCGAAAACATTATC+TGG + chr3_4:70002939-70002958 None:intergenic 40.0%
GAAATGGGAAAGAGAAGGAA+AGG + chr3_4:70001715-70001734 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG + chr3_4:70001776-70001795 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG + chr3_4:70001777-70001796 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG - chr3_4:70001777-70001796 Msa0518150:three_prime_UTR 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG + chr3_4:70001891-70001910 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG + chr3_4:70001912-70001931 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG + chr3_4:70001922-70001941 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG - chr3_4:70002022-70002041 Msa0518150:CDS 40.0%
GAAGAAAGGTCAGATTGTGA+GGG - chr3_4:70002023-70002042 Msa0518150:CDS 40.0%
TAGTTATGTCAGCTGTGAGT+AGG - chr3_4:70002111-70002130 Msa0518150:intron 40.0%
GGACTCAAATAACATGTCCA+AGG - chr3_4:70002135-70002154 Msa0518150:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG + chr3_4:70002544-70002563 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG - chr3_4:70002545-70002564 Msa0518150:CDS 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG - chr3_4:70002546-70002565 Msa0518150:CDS 40.0%
ACACAGCTCAACTAAAGATG+GGG + chr3_4:70002865-70002884 None:intergenic 40.0%
CACACAGCTCAACTAAAGAT+GGG + chr3_4:70002866-70002885 None:intergenic 40.0%
TCACACAGCTCAACTAAAGA+TGG + chr3_4:70002867-70002886 None:intergenic 40.0%
CATGGCCGAAAACATTATCT+GGG + chr3_4:70002938-70002957 None:intergenic 40.0%
TCATGGCCGAAAACATTATC+TGG + chr3_4:70002939-70002958 None:intergenic 40.0%
ATGGGAAAGAGAAGGAAAGG+AGG + chr3_4:70001712-70001731 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG + chr3_4:70001825-70001844 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG + chr3_4:70001859-70001878 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG - chr3_4:70002114-70002133 Msa0518150:intron 45.0%
GACTACATTTACGAAGACCG+TGG - chr3_4:70002209-70002228 Msa0518150:intron 45.0%
! AATTCTCAGGTTGCATGGGT+AGG - chr3_4:70002550-70002569 Msa0518150:CDS 45.0%
ATGTATGTAGGAAGCCAAGC+TGG + chr3_4:70002589-70002608 None:intergenic 45.0%
GCTCAACTAAAGATGGGGTA+TGG + chr3_4:70002860-70002879 None:intergenic 45.0%
ATGGGAAAGAGAAGGAAAGG+AGG + chr3_4:70001712-70001731 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG + chr3_4:70001825-70001844 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG + chr3_4:70001859-70001878 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG - chr3_4:70002114-70002133 Msa0518150:intron 45.0%
GACTACATTTACGAAGACCG+TGG - chr3_4:70002209-70002228 Msa0518150:intron 45.0%
! AATTCTCAGGTTGCATGGGT+AGG - chr3_4:70002550-70002569 Msa0518150:CDS 45.0%
ATGTATGTAGGAAGCCAAGC+TGG + chr3_4:70002589-70002608 None:intergenic 45.0%
GCTCAACTAAAGATGGGGTA+TGG + chr3_4:70002860-70002879 None:intergenic 45.0%
!! AATTCAAATAAATATTTATT+TGG + chr3_4:70001938-70001957 None:intergenic 5.0%
!! AATTCAAATAAATATTTATT+TGG + chr3_4:70001938-70001957 None:intergenic 5.0%
CAGTTCAAGACGGTGAACCA+GGG - chr3_4:70001787-70001806 Msa0518150:three_prime_UTR 50.0%
AGTTCAAGACGGTGAACCAG+GGG - chr3_4:70001788-70001807 Msa0518150:three_prime_UTR 50.0%
AGACTGAGCACTACTAGAGG+AGG + chr3_4:70001856-70001875 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG - chr3_4:70002026-70002045 Msa0518150:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG - chr3_4:70002032-70002051 Msa0518150:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG - chr3_4:70002214-70002233 Msa0518150:intron 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG - chr3_4:70002379-70002398 Msa0518150:CDS 50.0%
GTGCTGTAGGTGTGAACCAA+AGG - chr3_4:70002392-70002411 Msa0518150:CDS 50.0%
ATGGGGTATGGTGTCTCTGA+TGG + chr3_4:70002848-70002867 None:intergenic 50.0%
CAGTTCAAGACGGTGAACCA+GGG - chr3_4:70001787-70001806 Msa0518150:three_prime_UTR 50.0%
AGTTCAAGACGGTGAACCAG+GGG - chr3_4:70001788-70001807 Msa0518150:three_prime_UTR 50.0%
AGACTGAGCACTACTAGAGG+AGG + chr3_4:70001856-70001875 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG - chr3_4:70002026-70002045 Msa0518150:CDS 50.0%
TCAGATTGTGAGGGTGGACA+AGG - chr3_4:70002032-70002051 Msa0518150:CDS 50.0%
CATTTACGAAGACCGTGGTG+AGG - chr3_4:70002214-70002233 Msa0518150:intron 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG - chr3_4:70002379-70002398 Msa0518150:CDS 50.0%
GTGCTGTAGGTGTGAACCAA+AGG - chr3_4:70002392-70002411 Msa0518150:CDS 50.0%
ATGGGGTATGGTGTCTCTGA+TGG + chr3_4:70002848-70002867 None:intergenic 50.0%
GCAGTTCAAGACGGTGAACC+AGG - chr3_4:70001786-70001805 Msa0518150:three_prime_UTR 55.0%
GTTCAAGACGGTGAACCAGG+GGG - chr3_4:70001789-70001808 Msa0518150:three_prime_UTR 55.0%
AGCACTACTAGAGGAGGCTG+AGG + chr3_4:70001850-70001869 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG + chr3_4:70001883-70001902 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG - chr3_4:70002182-70002201 Msa0518150:intron 55.0%
GCAGTTCAAGACGGTGAACC+AGG - chr3_4:70001786-70001805 Msa0518150:three_prime_UTR 55.0%
GTTCAAGACGGTGAACCAGG+GGG - chr3_4:70001789-70001808 Msa0518150:three_prime_UTR 55.0%
AGCACTACTAGAGGAGGCTG+AGG + chr3_4:70001850-70001869 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG + chr3_4:70001883-70001902 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG - chr3_4:70002182-70002201 Msa0518150:intron 55.0%
GGCATGCTGTCAGCTGCCTT+TGG + chr3_4:70002411-70002430 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG + chr3_4:70002579-70002598 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG + chr3_4:70002580-70002599 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG + chr3_4:70002581-70002600 None:intergenic 60.0%
GGCATGCTGTCAGCTGCCTT+TGG + chr3_4:70002411-70002430 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG + chr3_4:70002579-70002598 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG + chr3_4:70002580-70002599 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG + chr3_4:70002581-70002600 None:intergenic 60.0%
TGTGGCTGTGTACTGCCCCC+TGG + chr3_4:70001807-70001826 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG - chr3_4:70002572-70002591 Msa0518150:CDS 65.0%
TGTGGCTGTGTACTGCCCCC+TGG + chr3_4:70001807-70001826 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG - chr3_4:70002572-70002591 Msa0518150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70001597 70003017 70001597 ID=Msa0518150;Name=Msa0518150
chr3_4 mRNA 70001597 70003017 70001597 ID=Msa0518150-mRNA-1;Parent=Msa0518150;Name=Msa0518150-mRNA-1;_AED=0.22;_eAED=0.22;_QI=81|1|1|1|0.83|0.71|7|194|165
chr3_4 exon 70001597 70001710 70001597 ID=Msa0518150-mRNA-1:exon:18856;Parent=Msa0518150-mRNA-1
chr3_4 exon 70001741 70001850 70001741 ID=Msa0518150-mRNA-1:exon:18855;Parent=Msa0518150-mRNA-1
chr3_4 exon 70001996 70002055 70001996 ID=Msa0518150-mRNA-1:exon:18854;Parent=Msa0518150-mRNA-1
chr3_4 exon 70002247 70002288 70002247 ID=Msa0518150-mRNA-1:exon:18853;Parent=Msa0518150-mRNA-1
chr3_4 exon 70002379 70002444 70002379 ID=Msa0518150-mRNA-1:exon:18852;Parent=Msa0518150-mRNA-1
chr3_4 exon 70002537 70002592 70002537 ID=Msa0518150-mRNA-1:exon:18851;Parent=Msa0518150-mRNA-1
chr3_4 exon 70002693 70003017 70002693 ID=Msa0518150-mRNA-1:exon:18850;Parent=Msa0518150-mRNA-1
chr3_4 five_prime_UTR 70002937 70003017 70002937 ID=Msa0518150-mRNA-1:five_prime_utr;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70002693 70002936 70002693 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70002537 70002592 70002537 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70002379 70002444 70002379 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70002247 70002288 70002247 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70001996 70002055 70001996 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 CDS 70001821 70001850 70001821 ID=Msa0518150-mRNA-1:cds;Parent=Msa0518150-mRNA-1
chr3_4 three_prime_UTR 70001741 70001820 70001741 ID=Msa0518150-mRNA-1:three_prime_utr;Parent=Msa0518150-mRNA-1
chr3_4 three_prime_UTR 70001597 70001710 70001597 ID=Msa0518150-mRNA-1:three_prime_utr;Parent=Msa0518150-mRNA-1
Gene Sequence

>Msa0518150

ATGGCTTTCTGTGTAACTCTCTGCTACTACACCTCCTTTCCTTCTCTTTCCCATTTCTCAAAAACTTTGACAAGGAAACATGTCCGTTCTTCTTTCCCATTGATTCGTGCAGTTCAAGACGGTGAACCAGGGGGCAGTACACAGCCACAAACTAAGAGCTCTGATGCTTCCTCAGCCTCCTCTAGTAGTGCTCAGTCTTCAACCACTGCCCCTAAGACTCTTCCTAAGAAACCTGTTTATTCCATGAAGAAAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCATCAATTATCTTTCTGTTGGGCACCCACCCTATTACAAAGGATTAGACTACATTTACGAAGACCGTGGTGAGGTCTTGGATATGCGTATATTTGAAACAGGAGAGCATGCACTTGTTGCATGGGTAGGAGTCCCCACTGCTCCAGCTTGGCTTCCTACATACATGCTTATCAAGTCAGAGAAGCTCAATTATGAGAGACTATAA

Protein sequence

>Msa0518150

MAFCVTLCYYTSFPSLSHFSKTLTRKHVRSSFPLIRAVQDGEPGGSTQPQTKSSDASSASSSSAQSSTTAPKTLPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDMRIFETGEHALVAWVGVPTAPAWLPTYMLIKSEKLNYERL*