AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453130 MtrunA17_Chr7g0263571 98.621 145 2 0 1 145 1 145 2.03e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453130 AT3G53470.2 68.750 96 30 0 48 143 40 135 1.17e-43 140
Msa1453130 AT3G53470.1 71.111 90 26 0 54 143 45 134 5.50e-42 136

Find 51 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGCTCACATATTTATT+TGG 0.178393 tig0034497:-2676 None:intergenic
AGTAATTTAACTATAGAATT+TGG 0.204600 tig0034497:+2860 Msa1453130:exon
CGTTCTTCCTTCGGCTCAAC+TGG 0.259066 tig0034497:-1498 None:intergenic
GATCTTTCTGTTCTCTTGAT+AGG 0.273479 tig0034497:-2739 None:intergenic
ATGCATATTATTGTAATTGA+TGG 0.281843 tig0034497:+2911 Msa1453130:three_prime_UTR
TACAAATTTGAAGGGGAAAT+AGG 0.290190 tig0034497:-1644 None:intergenic
AAGAAGAGGATGATAAAGTT+TGG 0.290458 tig0034497:-1615 None:intergenic
TTGAGATTGATCGTCCCTTT+TGG 0.300645 tig0034497:-1674 None:intergenic
AAAGATCAAACCTCAAATTC+TGG 0.301138 tig0034497:+2755 Msa1453130:CDS
CTTCTTCATTAGCATTGAAA+TGG 0.351444 tig0034497:+1531 Msa1453130:exon
TTGCAATTTCGTTCTTCCTT+CGG 0.373637 tig0034497:-1507 None:intergenic
TAGTTAAATTACTTGTTGAT+TGG 0.406008 tig0034497:-2850 None:intergenic
AGAAGAGGATGATAAAGTTT+GGG 0.426783 tig0034497:-1614 None:intergenic
AATAGAACAGGAATAGAAAC+AGG 0.428545 tig0034497:-2939 None:intergenic
TGATAAATCATCAACGGATT+GGG 0.428760 tig0034497:+2594 Msa1453130:CDS
GGAACATACTACAAATTTGA+AGG 0.434060 tig0034497:-1653 None:intergenic
TCTGAGATTCGCAAAGGATA+AGG 0.456294 tig0034497:+1467 Msa1453130:five_prime_UTR
CTTGACACAATTTATGTCCT+CGG 0.459402 tig0034497:+2980 Msa1453130:three_prime_UTR
AATTTGTAGTATGTTCCAAA+AGG 0.463127 tig0034497:+1659 Msa1453130:CDS
GTGATAAATCATCAACGGAT+TGG 0.467245 tig0034497:+2593 Msa1453130:CDS
TAGGACTAGTCCAGAATTTG+AGG 0.468478 tig0034497:-2765 None:intergenic
ACTTGTTGATTGGTGCTTGA+AGG 0.468811 tig0034497:-2840 None:intergenic
CTCCAAATAAATATGTGAGC+TGG 0.474358 tig0034497:+2674 Msa1453130:CDS
ATGGTCAAACTTCAAGAAGC+AGG 0.484213 tig0034497:+2624 Msa1453130:CDS
CGATGGGATATAAAAGTTGT+GGG 0.484995 tig0034497:-1577 None:intergenic
CTTGTTGATTGGTGCTTGAA+GGG 0.491316 tig0034497:-2839 None:intergenic
AATATGTGAGCTGGAATCCT+AGG 0.492726 tig0034497:+2683 Msa1453130:CDS
GAACATACTACAAATTTGAA+GGG 0.501237 tig0034497:-1652 None:intergenic
GGATCAACTTCTTCAGAAAG+TGG 0.503418 tig0034497:-2718 None:intergenic
AGTGGAAGAAGCAATAGAAC+AGG 0.515941 tig0034497:-2951 None:intergenic
AGAAGCTCCAGTTGAGCCGA+AGG 0.516045 tig0034497:+1491 Msa1453130:five_prime_UTR
GAGGATGATAAAGTTTGGGT+TGG 0.520750 tig0034497:-1610 None:intergenic
ATTTGTAGTATGTTCCAAAA+GGG 0.522502 tig0034497:+1660 Msa1453130:CDS
GCAAAAGTTGCACTTTGGAA+TGG 0.524395 tig0034497:-3084 None:intergenic
ACGATGGGATATAAAAGTTG+TGG 0.530720 tig0034497:-1578 None:intergenic
ATTTGAAGGGGAAATAGGAA+TGG 0.544166 tig0034497:-1639 None:intergenic
CAACGGATTGGGACAAGGCA+TGG 0.546580 tig0034497:+2605 Msa1453130:CDS
GAAATAGGAATGGAAAGAAG+AGG 0.566566 tig0034497:-1629 None:intergenic
GGGTTGGTGAAGAGAAACGA+TGG 0.569268 tig0034497:-1594 None:intergenic
GGTTGGTGAAGAGAAACGAT+GGG 0.586305 tig0034497:-1593 None:intergenic
CAAAGAAACGCCGATAACAA+TGG 0.593112 tig0034497:+1694 Msa1453130:CDS
ATCATCAACGGATTGGGACA+AGG 0.594053 tig0034497:+2600 Msa1453130:CDS
AGTGGAAAATCTGAACGCCT+AGG 0.596558 tig0034497:-2700 None:intergenic
CTCAGGTGATAAATCATCAA+CGG 0.602810 tig0034497:+2588 Msa1453130:intron
CGAGGACATAAATTGTGTCA+AGG 0.609330 tig0034497:-2979 None:intergenic
AACATACTACAAATTTGAAG+GGG 0.613458 tig0034497:-1651 None:intergenic
TGGTCAAACTTCAAGAAGCA+GGG 0.615004 tig0034497:+2625 Msa1453130:CDS
GTAAAATCTGAGATTCGCAA+AGG 0.620857 tig0034497:+1461 Msa1453130:five_prime_UTR
AATTGTGTCAAGGACTCGAG+TGG 0.625018 tig0034497:-2969 None:intergenic
AAAAGAGAATAACAAATCCG+AGG 0.655714 tig0034497:-2997 None:intergenic
GCCCCACCAAGAGTAAAAGT+AGG 0.658878 tig0034497:-2784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGATATAATTATGATTAA+CGG - tig0034497:1967-1986 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG + tig0034497:2860-2879 Msa1453130:exon 15.0%
!! TGTGATATAATTATGATTAA+CGG - tig0034497:1967-1986 None:intergenic 15.0%
!! AGTAATTTAACTATAGAATT+TGG + tig0034497:2860-2879 Msa1453130:exon 15.0%
!! TAGAAAAATACCATTGTTAT+CGG - tig0034497:1707-1726 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG + tig0034497:2295-2314 Msa1453130:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG + tig0034497:2382-2401 Msa1453130:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG - tig0034497:2853-2872 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG + tig0034497:2911-2930 Msa1453130:three_prime_UTR 20.0%
!! TAGAAAAATACCATTGTTAT+CGG - tig0034497:1707-1726 None:intergenic 20.0%
!! TTTCAATTTCTATTTCAATC+CGG + tig0034497:2295-2314 Msa1453130:intron 20.0%
!!! ATTAAGTATGTTTAGAATGA+CGG + tig0034497:2382-2401 Msa1453130:intron 20.0%
!!! TAGTTAAATTACTTGTTGAT+TGG - tig0034497:2853-2872 None:intergenic 20.0%
!! ATGCATATTATTGTAATTGA+TGG + tig0034497:2911-2930 Msa1453130:three_prime_UTR 20.0%
! AACATACTACAAATTTGAAG+GGG - tig0034497:1654-1673 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG - tig0034497:1655-1674 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG + tig0034497:1659-1678 Msa1453130:CDS 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG + tig0034497:1660-1679 Msa1453130:CDS 25.0%
! AGATTCGTAAAAATCAAACA+GGG - tig0034497:1837-1856 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG - tig0034497:1838-1857 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG + tig0034497:2126-2145 Msa1453130:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG - tig0034497:2291-2310 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG - tig0034497:2344-2363 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG + tig0034497:2383-2402 Msa1453130:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG - tig0034497:2537-2556 None:intergenic 25.0%
! AACATACTACAAATTTGAAG+GGG - tig0034497:1654-1673 None:intergenic 25.0%
! GAACATACTACAAATTTGAA+GGG - tig0034497:1655-1674 None:intergenic 25.0%
! AATTTGTAGTATGTTCCAAA+AGG + tig0034497:1659-1678 Msa1453130:CDS 25.0%
! ATTTGTAGTATGTTCCAAAA+GGG + tig0034497:1660-1679 Msa1453130:CDS 25.0%
! AGATTCGTAAAAATCAAACA+GGG - tig0034497:1837-1856 None:intergenic 25.0%
! TAGATTCGTAAAAATCAAAC+AGG - tig0034497:1838-1857 None:intergenic 25.0%
! AAAATACAGTGTTTAAGAGA+GGG + tig0034497:2126-2145 Msa1453130:intron 25.0%
! GAAATAGAAATTGAAATTCG+CGG - tig0034497:2291-2310 None:intergenic 25.0%
! ATGAAACAATTGATCGAAAT+TGG - tig0034497:2344-2363 None:intergenic 25.0%
!! TTAAGTATGTTTAGAATGAC+GGG + tig0034497:2383-2402 Msa1453130:intron 25.0%
! ATGAAACTCAACTAATTAAC+AGG - tig0034497:2537-2556 None:intergenic 25.0%
! CTTCTTCATTAGCATTGAAA+TGG + tig0034497:1531-1550 Msa1453130:exon 30.0%
AGAAGAGGATGATAAAGTTT+GGG - tig0034497:1617-1636 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG - tig0034497:1618-1637 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG - tig0034497:1647-1666 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG - tig0034497:1656-1675 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG + tig0034497:2053-2072 Msa1453130:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG + tig0034497:2125-2144 Msa1453130:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG + tig0034497:2127-2146 Msa1453130:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG + tig0034497:2157-2176 Msa1453130:intron 30.0%
! TAAGTATGTTTAGAATGACG+GGG + tig0034497:2384-2403 Msa1453130:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG + tig0034497:2474-2493 Msa1453130:intron 30.0%
! TGATAAATCATCAACGGATT+GGG + tig0034497:2594-2613 Msa1453130:CDS 30.0%
TTCCAGCTCACATATTTATT+TGG - tig0034497:2679-2698 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG + tig0034497:2755-2774 Msa1453130:CDS 30.0%
AATAGAACAGGAATAGAAAC+AGG - tig0034497:2942-2961 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG - tig0034497:3000-3019 None:intergenic 30.0%
! CTTCTTCATTAGCATTGAAA+TGG + tig0034497:1531-1550 Msa1453130:exon 30.0%
AGAAGAGGATGATAAAGTTT+GGG - tig0034497:1617-1636 None:intergenic 30.0%
AAGAAGAGGATGATAAAGTT+TGG - tig0034497:1618-1637 None:intergenic 30.0%
TACAAATTTGAAGGGGAAAT+AGG - tig0034497:1647-1666 None:intergenic 30.0%
GGAACATACTACAAATTTGA+AGG - tig0034497:1656-1675 None:intergenic 30.0%
! GCATAAGTTAGTTGTTGATT+CGG + tig0034497:2053-2072 Msa1453130:intron 30.0%
CAAAATACAGTGTTTAAGAG+AGG + tig0034497:2125-2144 Msa1453130:intron 30.0%
AAATACAGTGTTTAAGAGAG+GGG + tig0034497:2127-2146 Msa1453130:intron 30.0%
TTTCCTTCCTAGAAAGTAAT+CGG + tig0034497:2157-2176 Msa1453130:intron 30.0%
! TAAGTATGTTTAGAATGACG+GGG + tig0034497:2384-2403 Msa1453130:intron 30.0%
! TTTTGCCAAATTCACATAGT+CGG + tig0034497:2474-2493 Msa1453130:intron 30.0%
! TGATAAATCATCAACGGATT+GGG + tig0034497:2594-2613 Msa1453130:CDS 30.0%
TTCCAGCTCACATATTTATT+TGG - tig0034497:2679-2698 None:intergenic 30.0%
AAAGATCAAACCTCAAATTC+TGG + tig0034497:2755-2774 Msa1453130:CDS 30.0%
AATAGAACAGGAATAGAAAC+AGG - tig0034497:2942-2961 None:intergenic 30.0%
AAAAGAGAATAACAAATCCG+AGG - tig0034497:3000-3019 None:intergenic 30.0%
! GTAAAATCTGAGATTCGCAA+AGG + tig0034497:1461-1480 Msa1453130:five_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG - tig0034497:1510-1529 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG - tig0034497:1580-1599 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG - tig0034497:1581-1600 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG - tig0034497:1632-1651 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG - tig0034497:1642-1661 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG + tig0034497:1989-2008 Msa1453130:intron 35.0%
GATCCACTAGAACTAATTAG+AGG - tig0034497:1995-2014 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG - tig0034497:2023-2042 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG - tig0034497:2041-2060 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG + tig0034497:2128-2147 Msa1453130:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG - tig0034497:2317-2336 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG + tig0034497:2348-2367 Msa1453130:intron 35.0%
TAACAGGAAGATTACATGTC+TGG - tig0034497:2521-2540 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG + tig0034497:2588-2607 Msa1453130:intron 35.0%
GTGATAAATCATCAACGGAT+TGG + tig0034497:2593-2612 Msa1453130:CDS 35.0%
CTCCAAATAAATATGTGAGC+TGG + tig0034497:2674-2693 Msa1453130:CDS 35.0%
GATCTTTCTGTTCTCTTGAT+AGG - tig0034497:2742-2761 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG + tig0034497:2778-2797 Msa1453130:CDS 35.0%
CTTGACACAATTTATGTCCT+CGG + tig0034497:2980-2999 Msa1453130:three_prime_UTR 35.0%
! GTAAAATCTGAGATTCGCAA+AGG + tig0034497:1461-1480 Msa1453130:five_prime_UTR 35.0%
TTGCAATTTCGTTCTTCCTT+CGG - tig0034497:1510-1529 None:intergenic 35.0%
CGATGGGATATAAAAGTTGT+GGG - tig0034497:1580-1599 None:intergenic 35.0%
ACGATGGGATATAAAAGTTG+TGG - tig0034497:1581-1600 None:intergenic 35.0%
GAAATAGGAATGGAAAGAAG+AGG - tig0034497:1632-1651 None:intergenic 35.0%
ATTTGAAGGGGAAATAGGAA+TGG - tig0034497:1642-1661 None:intergenic 35.0%
!! GTACCTCTAATTAGTTCTAG+TGG + tig0034497:1989-2008 Msa1453130:intron 35.0%
GATCCACTAGAACTAATTAG+AGG - tig0034497:1995-2014 None:intergenic 35.0%
ACAGGCTCATCTAATTAAGT+AGG - tig0034497:2023-2042 None:intergenic 35.0%
ACTTATGCAACAAGCTAAAC+AGG - tig0034497:2041-2060 None:intergenic 35.0%
AATACAGTGTTTAAGAGAGG+GGG + tig0034497:2128-2147 Msa1453130:intron 35.0%
ACCAAGAAGATTCTTGAAAC+CGG - tig0034497:2317-2336 None:intergenic 35.0%
CGATCAATTGTTTCATACAG+AGG + tig0034497:2348-2367 Msa1453130:intron 35.0%
TAACAGGAAGATTACATGTC+TGG - tig0034497:2521-2540 None:intergenic 35.0%
CTCAGGTGATAAATCATCAA+CGG + tig0034497:2588-2607 Msa1453130:intron 35.0%
GTGATAAATCATCAACGGAT+TGG + tig0034497:2593-2612 Msa1453130:CDS 35.0%
CTCCAAATAAATATGTGAGC+TGG + tig0034497:2674-2693 Msa1453130:CDS 35.0%
GATCTTTCTGTTCTCTTGAT+AGG - tig0034497:2742-2761 None:intergenic 35.0%
!! ACTAGTCCTACTTTTACTCT+TGG + tig0034497:2778-2797 Msa1453130:CDS 35.0%
CTTGACACAATTTATGTCCT+CGG + tig0034497:2980-2999 Msa1453130:three_prime_UTR 35.0%
! TCTGAGATTCGCAAAGGATA+AGG + tig0034497:1467-1486 Msa1453130:five_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG - tig0034497:1613-1632 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG - tig0034497:1677-1696 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG + tig0034497:1694-1713 Msa1453130:CDS 40.0%
! GAAAACACGTCGCATTTTAG+AGG - tig0034497:1945-1964 None:intergenic 40.0%
! ATGCCGATTACTTTCTAGGA+AGG - tig0034497:2163-2182 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG - tig0034497:2167-2186 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG + tig0034497:2209-2228 Msa1453130:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG + tig0034497:2313-2332 Msa1453130:intron 40.0%
! CAACACCGACTATGTGAATT+TGG - tig0034497:2482-2501 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG + tig0034497:2571-2590 Msa1453130:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG + tig0034497:2624-2643 Msa1453130:CDS 40.0%
TGGTCAAACTTCAAGAAGCA+GGG + tig0034497:2625-2644 Msa1453130:CDS 40.0%
AATATGTGAGCTGGAATCCT+AGG + tig0034497:2683-2702 Msa1453130:CDS 40.0%
GGATCAACTTCTTCAGAAAG+TGG - tig0034497:2721-2740 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG - tig0034497:2768-2787 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG + tig0034497:2781-2800 Msa1453130:CDS 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG + tig0034497:2782-2801 Msa1453130:CDS 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG + tig0034497:2783-2802 Msa1453130:CDS 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG - tig0034497:2842-2861 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG - tig0034497:2843-2862 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG - tig0034497:2954-2973 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG - tig0034497:2982-3001 None:intergenic 40.0%
! TCTGAGATTCGCAAAGGATA+AGG + tig0034497:1467-1486 Msa1453130:five_prime_UTR 40.0%
GAGGATGATAAAGTTTGGGT+TGG - tig0034497:1613-1632 None:intergenic 40.0%
! TTGAGATTGATCGTCCCTTT+TGG - tig0034497:1677-1696 None:intergenic 40.0%
CAAAGAAACGCCGATAACAA+TGG + tig0034497:1694-1713 Msa1453130:CDS 40.0%
! GAAAACACGTCGCATTTTAG+AGG - tig0034497:1945-1964 None:intergenic 40.0%
! ATGCCGATTACTTTCTAGGA+AGG - tig0034497:2163-2182 None:intergenic 40.0%
! GATCATGCCGATTACTTTCT+AGG - tig0034497:2167-2186 None:intergenic 40.0%
! TGAGGGTGTAGGATTCAAAT+TGG + tig0034497:2209-2228 Msa1453130:intron 40.0%
TCCGGTTTCAAGAATCTTCT+TGG + tig0034497:2313-2332 Msa1453130:intron 40.0%
! CAACACCGACTATGTGAATT+TGG - tig0034497:2482-2501 None:intergenic 40.0%
AACTCTTCGTTCAATGTCTC+AGG + tig0034497:2571-2590 Msa1453130:intron 40.0%
ATGGTCAAACTTCAAGAAGC+AGG + tig0034497:2624-2643 Msa1453130:CDS 40.0%
TGGTCAAACTTCAAGAAGCA+GGG + tig0034497:2625-2644 Msa1453130:CDS 40.0%
AATATGTGAGCTGGAATCCT+AGG + tig0034497:2683-2702 Msa1453130:CDS 40.0%
GGATCAACTTCTTCAGAAAG+TGG - tig0034497:2721-2740 None:intergenic 40.0%
!! TAGGACTAGTCCAGAATTTG+AGG - tig0034497:2768-2787 None:intergenic 40.0%
!! AGTCCTACTTTTACTCTTGG+TGG + tig0034497:2781-2800 Msa1453130:CDS 40.0%
!! GTCCTACTTTTACTCTTGGT+GGG + tig0034497:2782-2801 Msa1453130:CDS 40.0%
!! TCCTACTTTTACTCTTGGTG+GGG + tig0034497:2783-2802 Msa1453130:CDS 40.0%
! CTTGTTGATTGGTGCTTGAA+GGG - tig0034497:2842-2861 None:intergenic 40.0%
! ACTTGTTGATTGGTGCTTGA+AGG - tig0034497:2843-2862 None:intergenic 40.0%
AGTGGAAGAAGCAATAGAAC+AGG - tig0034497:2954-2973 None:intergenic 40.0%
CGAGGACATAAATTGTGTCA+AGG - tig0034497:2982-3001 None:intergenic 40.0%
!! GGTTGGTGAAGAGAAACGAT+GGG - tig0034497:1596-1615 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG + tig0034497:2600-2619 Msa1453130:CDS 45.0%
AGTGGAAAATCTGAACGCCT+AGG - tig0034497:2703-2722 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG - tig0034497:2972-2991 None:intergenic 45.0%
!! GGTTGGTGAAGAGAAACGAT+GGG - tig0034497:1596-1615 None:intergenic 45.0%
!! ATCATCAACGGATTGGGACA+AGG + tig0034497:2600-2619 Msa1453130:CDS 45.0%
AGTGGAAAATCTGAACGCCT+AGG - tig0034497:2703-2722 None:intergenic 45.0%
AATTGTGTCAAGGACTCGAG+TGG - tig0034497:2972-2991 None:intergenic 45.0%
!! GGGTTGGTGAAGAGAAACGA+TGG - tig0034497:1597-1616 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG + tig0034497:2191-2210 Msa1453130:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG + tig0034497:2192-2211 Msa1453130:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG + tig0034497:2198-2217 Msa1453130:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG - tig0034497:2787-2806 None:intergenic 50.0%
!! GGGTTGGTGAAGAGAAACGA+TGG - tig0034497:1597-1616 None:intergenic 50.0%
! TGCAGAGGTTGACTTCAGTG+AGG + tig0034497:2191-2210 Msa1453130:intron 50.0%
! GCAGAGGTTGACTTCAGTGA+GGG + tig0034497:2192-2211 Msa1453130:intron 50.0%
! GTTGACTTCAGTGAGGGTGT+AGG + tig0034497:2198-2217 Msa1453130:intron 50.0%
GCCCCACCAAGAGTAAAAGT+AGG - tig0034497:2787-2806 None:intergenic 50.0%
AGAAGCTCCAGTTGAGCCGA+AGG + tig0034497:1491-1510 Msa1453130:five_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG - tig0034497:1501-1520 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG + tig0034497:2176-2195 Msa1453130:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG + tig0034497:2605-2624 Msa1453130:CDS 55.0%
AGAAGCTCCAGTTGAGCCGA+AGG + tig0034497:1491-1510 Msa1453130:five_prime_UTR 55.0%
CGTTCTTCCTTCGGCTCAAC+TGG - tig0034497:1501-1520 None:intergenic 55.0%
TCGGCATGATCATCGTGCAG+AGG + tig0034497:2176-2195 Msa1453130:intron 55.0%
!! CAACGGATTGGGACAAGGCA+TGG + tig0034497:2605-2624 Msa1453130:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0034497 gene 1454 3097 1454 ID=Msa1453130;Name=Msa1453130
tig0034497 mRNA 1454 3097 1454 ID=Msa1453130-mRNA-1;Parent=Msa1453130;Name=Msa1453130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|1|1|1|0|0.5|2|233|145
tig0034497 exon 1454 1715 1454 ID=Msa1453130-mRNA-1:exon:19021;Parent=Msa1453130-mRNA-1
tig0034497 exon 2593 3097 2593 ID=Msa1453130-mRNA-1:exon:19022;Parent=Msa1453130-mRNA-1
tig0034497 five_prime_UTR 1454 1549 1454 ID=Msa1453130-mRNA-1:five_prime_utr;Parent=Msa1453130-mRNA-1
tig0034497 CDS 1550 1715 1550 ID=Msa1453130-mRNA-1:cds;Parent=Msa1453130-mRNA-1
tig0034497 CDS 2593 2864 2593 ID=Msa1453130-mRNA-1:cds;Parent=Msa1453130-mRNA-1
tig0034497 three_prime_UTR 2865 3097 2865 ID=Msa1453130-mRNA-1:three_prime_utr;Parent=Msa1453130-mRNA-1
Gene Sequence

>Msa1453130

ATGGATATTCATAGACACATTTCAATACCCACAACTTTTATATCCCATCGTTTCTCTTCACCAACCCAAACTTTATCATCCTCTTCTTTCCATTCCTATTTCCCCTTCAAATTTGTAGTATGTTCCAAAAGGGACGATCAATCTCAAAGAAACGCCGATAACAATGGTGATAAATCATCAACGGATTGGGACAAGGCATGGTCAAACTTCAAGAAGCAGGGAAAAAAAACTCTCTTCTCAAATTTTTCTCCAAATAAATATGTGAGCTGGAATCCTAGGCGTTCAGATTTTCCACTTTCTGAAGAAGTTGATCCTATCAAGAGAACAGAAAGATCAAACCTCAAATTCTGGACTAGTCCTACTTTTACTCTTGGTGGGGCACTTATTATTCTCATAGTTCTTTTGTTGTACACCCTTCAAGCACCAATCAACAAGTAA

Protein sequence

>Msa1453130

MDIHRHISIPTTFISHRFSSPTQTLSSSSFHSYFPFKFVVCSKRDDQSQRNADNNGDKSSTDWDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNLKFWTSPTFTLGGALIILIVLLLYTLQAPINK*