AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0208040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208040 MtrunA17_Chr2g0306771 89.529 382 12 2 1 354 1 382 0.0 688
Msa0208040 MtrunA17_Chr4g0008411 37.234 188 92 6 183 345 11 197 3.50e-21 91.3
Msa0208040 MtrunA17_Chr4g0008421 34.694 196 97 8 182 349 97 289 1.56e-19 87.4
Msa0208040 MtrunA17_Chr7g0266341 32.323 198 102 6 180 349 99 292 1.65e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208040 AT5G20140.1 64.957 351 94 3 33 354 28 378 3.83e-166 469
Msa0208040 AT5G20140.2 64.565 333 89 3 37 340 32 364 6.91e-156 443
Msa0208040 AT2G37970.1 33.971 209 94 8 182 349 41 246 3.36e-18 83.2
Msa0208040 AT3G10130.1 30.392 204 100 7 180 350 112 306 4.83e-16 78.2

Find 99 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCGCAGGTATATATT+TGG 0.154800 2_1:+42208055 Msa0208040:intron
AAATCATCATGCTTAGTAAT+TGG 0.154857 2_1:-42205975 None:intergenic
CCTCAATTTCCCAGGACTTT+TGG 0.191970 2_1:+42207308 Msa0208040:intron
CTACAACTTGCACCACTTTC+CGG 0.208753 2_1:+42205709 Msa0208040:CDS
CAGACCATCTTTAATGATAT+TGG 0.210028 2_1:-42208611 None:intergenic
TTCAACTAAGCTCAGATTAA+TGG 0.251072 2_1:-42205823 None:intergenic
AAGCTAACTGTTTCTTGATT+AGG 0.251086 2_1:-42208496 None:intergenic
ACAAATGGAGACAAGCTATC+TGG 0.265343 2_1:+42207922 Msa0208040:CDS
AAAAGACATATTAGCAAATA+AGG 0.276348 2_1:+42210074 Msa0208040:three_prime_UTR
TGTCTGATGGAAGAACTATT+TGG 0.281044 2_1:-42208162 None:intergenic
GTAGGCTTTCACTTATTCTT+TGG 0.282132 2_1:+42210156 Msa0208040:three_prime_UTR
ACTGTTTCTTGATTAGGATT+TGG 0.296904 2_1:-42208490 None:intergenic
AAACCAGAATTGGTCTTTAC+AGG 0.303338 2_1:+42207010 Msa0208040:CDS
GTTCCTGTAAAGACCAATTC+TGG 0.315384 2_1:-42207013 None:intergenic
CTTTACAGGAACATCTGTTA+TGG 0.331343 2_1:+42207024 Msa0208040:CDS
TCCTCACCTCTTTGATGATA+AGG 0.332232 2_1:+42205908 Msa0208040:CDS
ATGGGTGTTAACCCAGAAAA+TGG 0.339771 2_1:+42207043 Msa0208040:CDS
CCTCACCTCTTTGATGATAA+GGG 0.345368 2_1:+42205909 Msa0208040:CDS
GATTTACAAGACACCAGATT+TGG 0.350699 2_1:+42207506 Msa0208040:CDS
AACTATTTGGATTGAGACTT+TGG 0.355211 2_1:-42208149 None:intergenic
CAGATACAAGGAGTGATGTT+TGG 0.371055 2_1:+42210029 Msa0208040:three_prime_UTR
TACGGTGTCTCCGTGGTGGC+TGG 0.372285 2_1:-42205779 None:intergenic
AACAGAGAATGACATCAATA+TGG 0.376578 2_1:-42209965 None:intergenic
CTCTTTGTTTCTTTGTCTGA+TGG 0.379732 2_1:-42208175 None:intergenic
TATTTGGGTGATTCCAAATC+TGG 0.380267 2_1:-42207519 None:intergenic
AAATAAGGTGCATGGTCATT+AGG 0.381234 2_1:+42210089 Msa0208040:three_prime_UTR
CATCTTGTAGTTATTTCATA+AGG 0.386402 2_1:-42206953 None:intergenic
AGAGGAATGAAGTGCTCATT+TGG 0.389953 2_1:+42209823 Msa0208040:intron
ACCGGCTTTAATGATGTTGC+TGG 0.397252 2_1:+42207949 Msa0208040:CDS
TTGGCTAGATGACTTCTCAT+TGG 0.404823 2_1:+42209842 Msa0208040:CDS
TTTACAGGAACATCTGTTAT+GGG 0.408859 2_1:+42207025 Msa0208040:CDS
GCTGCAGTAATAAAGTTTAG+TGG 0.421311 2_1:+42208541 Msa0208040:CDS
AGGAAATGGGTGGGAGAGAA+TGG 0.421650 2_1:-42205688 None:intergenic
AATCATCATGCTTAGTAATT+GGG 0.426244 2_1:-42205974 None:intergenic
TTTATTGGAAGTATTCAAAC+AGG 0.429041 2_1:+42207369 Msa0208040:CDS
CGCTCCAATATCATTAAAGA+TGG 0.429781 2_1:+42208607 Msa0208040:CDS
GCTTCCATGGAAACCAGAAT+TGG 0.431262 2_1:+42207000 Msa0208040:CDS
TCGAACATGGTCCTTCATAA+TGG 0.440473 2_1:+42208678 Msa0208040:CDS
GTGGTGCAAGTTGTAGGAAA+TGG 0.442861 2_1:-42205702 None:intergenic
GTTAGCTTGAGAAAGGTAGA+AGG 0.445389 2_1:+42208511 Msa0208040:CDS
CGGAAAGTGGTGCAAGTTGT+AGG 0.450152 2_1:-42205708 None:intergenic
AGGGTAGTTGTGGATGTTGA+AGG 0.454523 2_1:-42205745 None:intergenic
CTTGCCCGTTACAATGATCC+AGG 0.455438 2_1:+42208655 Msa0208040:CDS
CCAAATATCAAATATTAAAA+CGG 0.467136 2_1:+42207535 Msa0208040:CDS
TGAAATTCATGCTGCTTCCA+TGG 0.477688 2_1:+42206987 Msa0208040:CDS
CAAATGGAGACAAGCTATCT+GGG 0.479821 2_1:+42207923 Msa0208040:CDS
TTCGCGAACAATATCCTCCA+TGG 0.485927 2_1:-42208569 None:intergenic
AAGACCAATTCTGGTTTCCA+TGG 0.488831 2_1:-42207004 None:intergenic
GGAGAGAATGGAAGTGGCCA+TGG 0.497885 2_1:-42205676 None:intergenic
GGAGGATATTGTTCGCGAAA+AGG 0.499867 2_1:+42208573 Msa0208040:CDS
TGGTGCAAGTTGTAGGAAAT+GGG 0.500255 2_1:-42205701 None:intergenic
TTCGTAGTAGTAGAAACAAA+TGG 0.502411 2_1:+42207907 Msa0208040:CDS
TTCGCAGCATACCATTATGA+AGG 0.511503 2_1:-42208689 None:intergenic
GACAAGCTATCTGGGAATAC+CGG 0.516068 2_1:+42207931 Msa0208040:CDS
TCGATGGCTTGAGTGAATAC+AGG 0.518542 2_1:-42208115 None:intergenic
AGAAACAGTTAGCTTGAGAA+AGG 0.518821 2_1:+42208504 Msa0208040:CDS
ATAAATTATCTTCAGATACA+AGG 0.522440 2_1:+42210017 Msa0208040:three_prime_UTR
TTTGTTTCTACTACTACGAA+TGG 0.522785 2_1:-42207904 None:intergenic
TCGACCTGGATCATTGTAAC+GGG 0.527359 2_1:-42208659 None:intergenic
GAAGAAGTGGAGGGTAGTTG+TGG 0.530493 2_1:-42205755 None:intergenic
GGAGGTTGGTCGCCGGAAAG+TGG 0.531539 2_1:-42205721 None:intergenic
TCGCGAACAATATCCTCCAT+GGG 0.547839 2_1:-42208568 None:intergenic
CATCGGTATCTTCTCTGCTG+TGG 0.557509 2_1:-42208086 None:intergenic
CGTGGTGGCTGGAGAAGAAG+TGG 0.560248 2_1:-42205768 None:intergenic
CATTAACAATGAAGTACTCA+TGG 0.566632 2_1:+42209870 Msa0208040:three_prime_UTR
CCCAGCAACATCATTAAAGC+CGG 0.567439 2_1:-42207950 None:intergenic
CTTATGAAATAACTACAAGA+TGG 0.569482 2_1:+42206954 Msa0208040:CDS
TGGATGTTGAAGGCGGAGGT+TGG 0.570197 2_1:-42205735 None:intergenic
GTTGTGGATGTTGAAGGCGG+AGG 0.572578 2_1:-42205739 None:intergenic
TGGGTGGGAGAGAATGGAAG+TGG 0.573642 2_1:-42205682 None:intergenic
CCGGCTTTAATGATGTTGCT+GGG 0.579992 2_1:+42207950 Msa0208040:CDS
TTCGACCTGGATCATTGTAA+CGG 0.580924 2_1:-42208660 None:intergenic
AAAGTTTAGTGGAAAACCCA+TGG 0.583126 2_1:+42208552 Msa0208040:CDS
ACAATGATCCAGGTCGAACA+TGG 0.586299 2_1:+42208665 Msa0208040:CDS
TGAAGGCGGAGGTTGGTCGC+CGG 0.586760 2_1:-42205728 None:intergenic
AAAACGGACAGCAAATTATG+AGG 0.586779 2_1:+42207551 Msa0208040:CDS
ATGAAGGACCATGTTCGACC+TGG 0.591864 2_1:-42208673 None:intergenic
TGCAAGTTGTAGGAAATGGG+TGG 0.597054 2_1:-42205698 None:intergenic
CACTTCTTCTCCAGCCACCA+CGG 0.597086 2_1:+42205769 Msa0208040:CDS
AATAGTGTACACTGTACAGT+AGG 0.597176 2_1:+42210138 Msa0208040:three_prime_UTR
TTTGGACAAGTCAATATCGA+TGG 0.598178 2_1:-42208131 None:intergenic
ACTAAGCATGATGATTTGAG+TGG 0.598452 2_1:+42205981 Msa0208040:CDS
GCAAGTTGTAGGAAATGGGT+GGG 0.599564 2_1:-42205697 None:intergenic
GCAAGCAAACAACCAGGCTG+AGG 0.606063 2_1:-42208637 None:intergenic
CATCAGACAAAGAAACAAAG+AGG 0.609686 2_1:+42208176 Msa0208040:CDS
GATGGTCTGAAACCTCAGCC+TGG 0.615097 2_1:+42208625 Msa0208040:CDS
CAGCATGAATTTCATAACCA+TGG 0.617626 2_1:-42206978 None:intergenic
CAATACCCTTATCATCAAAG+AGG 0.620697 2_1:-42205914 None:intergenic
ATATTAGCAAATAAGGTGCA+TGG 0.624531 2_1:+42210081 Msa0208040:three_prime_UTR
ATATATGACATATTCATACA+AGG 0.624779 2_1:+42210191 Msa0208040:three_prime_UTR
GTGAATACAGGAGTAGTCAT+CGG 0.628384 2_1:-42208103 None:intergenic
GTAGTTGTGGATGTTGAAGG+CGG 0.633641 2_1:-42205742 None:intergenic
CCCTTATCATCAAAGAGGTG+AGG 0.636487 2_1:-42205909 None:intergenic
AGCTTGAGAAAGGTAGAAGG+AGG 0.657758 2_1:+42208514 Msa0208040:CDS
TAACGGGCAAGCAAACAACC+AGG 0.667765 2_1:-42208643 None:intergenic
GGTGGCTGGAGAAGAAGTGG+AGG 0.668019 2_1:-42205765 None:intergenic
AATAACTACAAGATGGACCA+TGG 0.682550 2_1:+42206961 Msa0208040:CDS
GTGGCTGGAGAAGAAGTGGA+GGG 0.697700 2_1:-42205764 None:intergenic
GTTTAGTGGAAAACCCATGG+AGG 0.746638 2_1:+42208555 Msa0208040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATGTGATTTTTTTTA+CGG - chr2_1:42205800-42205819 None:intergenic 10.0%
!! TAAAAAAAATCACATTAAAT+GGG + chr2_1:42205800-42205819 Msa0208040:CDS 10.0%
!! TTTAACCATATAAAATAATT+AGG - chr2_1:42209326-42209345 None:intergenic 10.0%
!!! TAATTATTTTATATGGTTAA+AGG + chr2_1:42209325-42209344 Msa0208040:intron 10.0%
!!! AATTATTTTATATGGTTAAA+GGG + chr2_1:42209326-42209345 Msa0208040:intron 10.0%
!! GTAAAAAAAATCACATTAAA+TGG + chr2_1:42205799-42205818 Msa0208040:CDS 15.0%
!!! TTTTCAGCTTATTTATATAT+AGG + chr2_1:42206187-42206206 Msa0208040:intron 15.0%
!! TTGTTTGTATAAAATATCAT+AGG - chr2_1:42206532-42206551 None:intergenic 15.0%
!!! TACTTTCATATTCATTTTTT+TGG + chr2_1:42206577-42206596 Msa0208040:intron 15.0%
!! ATAATATTGTATGAAAATCA+AGG - chr2_1:42206725-42206744 None:intergenic 15.0%
!!! TGATTTTCATACAATATTAT+AGG + chr2_1:42206725-42206744 Msa0208040:intron 15.0%
!!! TTATCTATGGTTTTAAATTT+TGG + chr2_1:42207112-42207131 Msa0208040:intron 15.0%
!!! CGTTTTAATATTTGATATTT+GGG - chr2_1:42207537-42207556 None:intergenic 15.0%
!! CCAAATATCAAATATTAAAA+CGG + chr2_1:42207535-42207554 Msa0208040:CDS 15.0%
!! ATTACATTAAAGAATTAAGA+GGG - chr2_1:42209538-42209557 None:intergenic 15.0%
!! ATATAAATAAGCTGAAAACA+TGG - chr2_1:42206185-42206204 None:intergenic 20.0%
!!! GTTTGACTTTATTTTATCTT+TGG + chr2_1:42206332-42206351 Msa0208040:intron 20.0%
!! TTAACCACTTATAGTATTAT+CGG - chr2_1:42206380-42206399 None:intergenic 20.0%
!! AACAAGACATAAAAAAGTTA+AGG - chr2_1:42206897-42206916 None:intergenic 20.0%
!!! AATGACTATTTTTCATTTGA+AGG + chr2_1:42207346-42207365 Msa0208040:CDS 20.0%
!!! TTTTTCATTTGAAGGTTTAT+TGG + chr2_1:42207354-42207373 Msa0208040:CDS 20.0%
!!! CCGTTTTAATATTTGATATT+TGG - chr2_1:42207538-42207557 None:intergenic 20.0%
!! ATATCAAAAGTTAACACAAA+AGG + chr2_1:42207739-42207758 Msa0208040:intron 20.0%
!!! TGAATTCATTGTTTTTTTGA+TGG + chr2_1:42207858-42207877 Msa0208040:intron 20.0%
!! TATAACAAAAAGAAAATGCT+CGG + chr2_1:42208767-42208786 Msa0208040:intron 20.0%
!!! TTTTTTTTTACTAGTCTCTA+AGG - chr2_1:42208882-42208901 None:intergenic 20.0%
!! TTAGAGACTAGTAAAAAAAA+AGG + chr2_1:42208881-42208900 Msa0208040:intron 20.0%
!! TAGAGACTAGTAAAAAAAAA+GGG + chr2_1:42208882-42208901 Msa0208040:intron 20.0%
!! TTAGAGACTAGTAAAAAAAA+GGG + chr2_1:42208881-42208900 Msa0208040:intron 20.0%
!!! ACTAGCCTAATTATTTTATA+TGG + chr2_1:42209318-42209337 Msa0208040:intron 20.0%
!! CATTACATTAAAGAATTAAG+AGG - chr2_1:42209539-42209558 None:intergenic 20.0%
!!! TATGGATTTTCTTAGAATTT+GGG + chr2_1:42209564-42209583 Msa0208040:intron 20.0%
!! CTTAAAATTACTATATAAGC+TGG - chr2_1:42209641-42209660 None:intergenic 20.0%
!!! CAGCTTATATAGTAATTTTA+AGG + chr2_1:42209639-42209658 Msa0208040:intron 20.0%
!! ATAAATTATCTTCAGATACA+AGG + chr2_1:42210017-42210036 Msa0208040:three_prime_UTR 20.0%
!! AAAAGACATATTAGCAAATA+AGG + chr2_1:42210074-42210093 Msa0208040:three_prime_UTR 20.0%
!!! TTTTTTTACAATTTGATGAG+TGG - chr2_1:42210117-42210136 None:intergenic 20.0%
!! ATATATGACATATTCATACA+AGG + chr2_1:42210191-42210210 Msa0208040:three_prime_UTR 20.0%
! AATCATCATGCTTAGTAATT+GGG - chr2_1:42205977-42205996 None:intergenic 25.0%
! AAATCATCATGCTTAGTAAT+TGG - chr2_1:42205978-42205997 None:intergenic 25.0%
! GATAAAAATAACCATAAGAC+GGG - chr2_1:42206099-42206118 None:intergenic 25.0%
! CGATAAAAATAACCATAAGA+CGG - chr2_1:42206100-42206119 None:intergenic 25.0%
! ATTTATATATAGGCTCTGTT+TGG + chr2_1:42206197-42206216 Msa0208040:intron 25.0%
! GAAATCACAATAATGATAGA+TGG + chr2_1:42206219-42206238 Msa0208040:intron 25.0%
! TTAACCGATAATACTATAAG+TGG + chr2_1:42206373-42206392 Msa0208040:intron 25.0%
!!! TAATAGACTGAAACTTGTTT+TGG - chr2_1:42206416-42206435 None:intergenic 25.0%
! GAATGTATAATCACATATGT+TGG - chr2_1:42206697-42206716 None:intergenic 25.0%
!!! TTATGTCTTGTTTGTTCAAT+TGG + chr2_1:42206905-42206924 Msa0208040:intron 25.0%
!! CATCTTGTAGTTATTTCATA+AGG - chr2_1:42206956-42206975 None:intergenic 25.0%
! CTTATGAAATAACTACAAGA+TGG + chr2_1:42206954-42206973 Msa0208040:CDS 25.0%
!!! TTTTAAATTTTGGTTGCAGT+CGG + chr2_1:42207122-42207141 Msa0208040:intron 25.0%
!! ATTGGTGTTTATAAATGAAG+TGG + chr2_1:42207257-42207276 Msa0208040:intron 25.0%
! TAAATGAAGTGGTATTATGT+TGG + chr2_1:42207268-42207287 Msa0208040:intron 25.0%
!!! TTTATTGGAAGTATTCAAAC+AGG + chr2_1:42207369-42207388 Msa0208040:CDS 25.0%
!! GTTAACTTTTGATATGTTTG+TGG - chr2_1:42207734-42207753 None:intergenic 25.0%
!!! TTGAAGTAGTTTTATAATGG+TGG - chr2_1:42207784-42207803 None:intergenic 25.0%
!!! GACTTGAAGTAGTTTTATAA+TGG - chr2_1:42207787-42207806 None:intergenic 25.0%
! TACTTCAAGTCAAAAACAAA+AGG + chr2_1:42207796-42207815 Msa0208040:intron 25.0%
! ACAAAAGGATGTATCTTATA+TGG + chr2_1:42207811-42207830 Msa0208040:intron 25.0%
!!! TGTTTTTTTGATGGTATAAC+AGG + chr2_1:42207867-42207886 Msa0208040:intron 25.0%
! TTCTTTACTAAGCATATGTT+TGG - chr2_1:42208389-42208408 None:intergenic 25.0%
! AACATATGCTTAGTAAAGAA+AGG + chr2_1:42208389-42208408 Msa0208040:intron 25.0%
! CATGCATATTCAAAATCAAA+TGG - chr2_1:42208731-42208750 None:intergenic 25.0%
!!! CATTTGATTTTGAATATGCA+TGG + chr2_1:42208729-42208748 Msa0208040:intron 25.0%
!!! CTTTTTTTTACTAGTCTCTA+AGG - chr2_1:42209003-42209022 None:intergenic 25.0%
! CTTAGAGACTAGTAAAAAAA+AGG + chr2_1:42208880-42208899 Msa0208040:intron 25.0%
! ATGAATACTAATCTCTAATG+GGG - chr2_1:42209167-42209186 None:intergenic 25.0%
! CATGAATACTAATCTCTAAT+GGG - chr2_1:42209168-42209187 None:intergenic 25.0%
! ACATGAATACTAATCTCTAA+TGG - chr2_1:42209169-42209188 None:intergenic 25.0%
! AAACTACTGCAAATTAATCT+TGG - chr2_1:42209269-42209288 None:intergenic 25.0%
! GTAGAAAAACTAAACCATAA+TGG - chr2_1:42209476-42209495 None:intergenic 25.0%
!! CAAATTCTAAGAAAATCCAT+AGG - chr2_1:42209565-42209584 None:intergenic 25.0%
!! CTATGGATTTTCTTAGAATT+TGG + chr2_1:42209563-42209582 Msa0208040:intron 25.0%
!!! ATTTTCTTAGAATTTGGGTT+GGG + chr2_1:42209569-42209588 Msa0208040:intron 25.0%
!! TTTTACATGCCTACTATTTT+TGG - chr2_1:42210057-42210076 None:intergenic 25.0%
TTCAACTAAGCTCAGATTAA+TGG - chr2_1:42205826-42205845 None:intergenic 30.0%
TAAGAAGAGCAATGTTGAAA+AGG - chr2_1:42206010-42206029 None:intergenic 30.0%
TGTCTCTATATGTTCTTCTA+AGG - chr2_1:42206147-42206166 None:intergenic 30.0%
AGAACATATAGAGACAACTT+AGG + chr2_1:42206151-42206170 Msa0208040:intron 30.0%
AGAGGAAAAAAAGAGAGAAA+CGG - chr2_1:42206248-42206267 None:intergenic 30.0%
GTTACTATGAGATATAGACA+CGG - chr2_1:42206780-42206799 None:intergenic 30.0%
TTTACAGGAACATCTGTTAT+GGG + chr2_1:42207025-42207044 Msa0208040:CDS 30.0%
!!! TACAAAACTTGCCATTTTCT+GGG - chr2_1:42207057-42207076 None:intergenic 30.0%
!!! TTTAAATTTTGGTTGCAGTC+GGG + chr2_1:42207123-42207142 Msa0208040:intron 30.0%
AAGAGGAAAAAAAATGCCAA+AGG - chr2_1:42207423-42207442 None:intergenic 30.0%
!! TTTTGGAAGACTTACAAAAG+AGG - chr2_1:42207440-42207459 None:intergenic 30.0%
! TAACAACTCACAGCAAATTT+TGG - chr2_1:42207457-42207476 None:intergenic 30.0%
! TAAAGGCACAATCATCAAAA+AGG - chr2_1:42207700-42207719 None:intergenic 30.0%
!! TTTGTTTCTACTACTACGAA+TGG - chr2_1:42207907-42207926 None:intergenic 30.0%
TTCGTAGTAGTAGAAACAAA+TGG + chr2_1:42207907-42207926 Msa0208040:CDS 30.0%
TGTTAAAAATCTTCATTCGC+AGG + chr2_1:42208044-42208063 Msa0208040:intron 30.0%
TTCATTCGCAGGTATATATT+TGG + chr2_1:42208055-42208074 Msa0208040:intron 30.0%
AACTATTTGGATTGAGACTT+TGG - chr2_1:42208152-42208171 None:intergenic 30.0%
! AGTAAAGAAAGGAAGTTTTG+TGG + chr2_1:42208400-42208419 Msa0208040:intron 30.0%
!! GAAGTTTTGTGGAAGAATTA+GGG + chr2_1:42208411-42208430 Msa0208040:intron 30.0%
! ACTGTTTCTTGATTAGGATT+TGG - chr2_1:42208493-42208512 None:intergenic 30.0%
! AAGCTAACTGTTTCTTGATT+AGG - chr2_1:42208499-42208518 None:intergenic 30.0%
CAGACCATCTTTAATGATAT+TGG - chr2_1:42208614-42208633 None:intergenic 30.0%
AACAACATACTGTAAGATCT+TGG - chr2_1:42208859-42208878 None:intergenic 30.0%
TTGTTGCAAAAAACAGTGTA+AGG - chr2_1:42208956-42208975 None:intergenic 30.0%
AACAACATACTGTAAGATCT+TGG - chr2_1:42208859-42208878 None:intergenic 30.0%
TGAAAACAGACTATTGTGTA+AGG - chr2_1:42209076-42209095 None:intergenic 30.0%
! TTGTCTAGAATTGTTAGGTT+AGG - chr2_1:42209396-42209415 None:intergenic 30.0%
! ATGGATTTGAAGTTCCATTA+TGG + chr2_1:42209459-42209478 Msa0208040:intron 30.0%
! GATTTTCTTAGAATTTGGGT+TGG + chr2_1:42209568-42209587 Msa0208040:intron 30.0%
TATCTCAGCTCCTATAAAAT+CGG + chr2_1:42209594-42209613 Msa0208040:intron 30.0%
AGCAGACAAATATCAAATTG+AGG - chr2_1:42209757-42209776 None:intergenic 30.0%
! CATTAACAATGAAGTACTCA+TGG + chr2_1:42209870-42209889 Msa0208040:three_prime_UTR 30.0%
!!! AGATGGAATTTTTTACTGAC+TGG - chr2_1:42209914-42209933 None:intergenic 30.0%
!! TGGGAAAATGACTTTTAAGA+TGG - chr2_1:42209931-42209950 None:intergenic 30.0%
GACATCAATATGGAAAAACT+TGG - chr2_1:42209958-42209977 None:intergenic 30.0%
AACAGAGAATGACATCAATA+TGG - chr2_1:42209968-42209987 None:intergenic 30.0%
ATATTAGCAAATAAGGTGCA+TGG + chr2_1:42210081-42210100 Msa0208040:three_prime_UTR 30.0%
CAATACCCTTATCATCAAAG+AGG - chr2_1:42205917-42205936 None:intergenic 35.0%
ACTAAGCATGATGATTTGAG+TGG + chr2_1:42205981-42206000 Msa0208040:CDS 35.0%
AATAACCATAAGACGGGAAA+AGG - chr2_1:42206093-42206112 None:intergenic 35.0%
!! AGTTGTTAAGCTAGCTTTAG+AGG - chr2_1:42206266-42206285 None:intergenic 35.0%
TATAAGCTGATGACTCTGTT+TGG - chr2_1:42206304-42206323 None:intergenic 35.0%
! CTATGTGTCACTATCGTATT+CGG + chr2_1:42206751-42206770 Msa0208040:intron 35.0%
TGGTAGAACAAACGCTTATT+TGG + chr2_1:42206838-42206857 Msa0208040:intron 35.0%
AATAACTACAAGATGGACCA+TGG + chr2_1:42206961-42206980 Msa0208040:CDS 35.0%
CAGCATGAATTTCATAACCA+TGG - chr2_1:42206981-42207000 None:intergenic 35.0%
!! AAACCAGAATTGGTCTTTAC+AGG + chr2_1:42207010-42207029 Msa0208040:CDS 35.0%
CTTTACAGGAACATCTGTTA+TGG + chr2_1:42207024-42207043 Msa0208040:CDS 35.0%
!!! CTACAAAACTTGCCATTTTC+TGG - chr2_1:42207058-42207077 None:intergenic 35.0%
GATAGTTGGAAATTACCACA+TGG - chr2_1:42207081-42207100 None:intergenic 35.0%
AATTTCCAACTATCCAGTAC+TGG + chr2_1:42207087-42207106 Msa0208040:intron 35.0%
! ATTGATAACACTAGTCATCG+AGG - chr2_1:42207239-42207258 None:intergenic 35.0%
CGATGACTAGTGTTATCAAT+TGG + chr2_1:42207239-42207258 Msa0208040:intron 35.0%
TTACTCTTGATGTATGCCTT+TGG + chr2_1:42207404-42207423 Msa0208040:intron 35.0%
! GATTTGACATTTTGCAGTTG+AGG + chr2_1:42207484-42207503 Msa0208040:intron 35.0%
GATTTACAAGACACCAGATT+TGG + chr2_1:42207506-42207525 Msa0208040:CDS 35.0%
TATTTGGGTGATTCCAAATC+TGG - chr2_1:42207522-42207541 None:intergenic 35.0%
AAAACGGACAGCAAATTATG+AGG + chr2_1:42207551-42207570 Msa0208040:CDS 35.0%
CACTATGTTCATGAATGAGA+AGG - chr2_1:42207581-42207600 None:intergenic 35.0%
GCATGAATGCTCATATCAAA+AGG + chr2_1:42207665-42207684 Msa0208040:intron 35.0%
! TTGTGGTGCAGTTTTCATAA+AGG - chr2_1:42207717-42207736 None:intergenic 35.0%
AATTTGTCGCTCTCTATTTC+AGG + chr2_1:42208010-42208029 Msa0208040:intron 35.0%
TTTGGACAAGTCAATATCGA+TGG - chr2_1:42208134-42208153 None:intergenic 35.0%
TGTCTGATGGAAGAACTATT+TGG - chr2_1:42208165-42208184 None:intergenic 35.0%
! CTCTTTGTTTCTTTGTCTGA+TGG - chr2_1:42208178-42208197 None:intergenic 35.0%
CATCAGACAAAGAAACAAAG+AGG + chr2_1:42208176-42208195 Msa0208040:CDS 35.0%
CACAAACATGGAAAACAAAC+AGG - chr2_1:42208275-42208294 None:intergenic 35.0%
AAGCGGGAAATCAGAAATAT+AGG - chr2_1:42208309-42208328 None:intergenic 35.0%
! AACCCTTTATTTGTCTGAAG+CGG - chr2_1:42208326-42208345 None:intergenic 35.0%
!! AAATAAAGGGTTAGTTGCCT+AGG + chr2_1:42208334-42208353 Msa0208040:intron 35.0%
!! AATAAAGGGTTAGTTGCCTA+GGG + chr2_1:42208335-42208354 Msa0208040:intron 35.0%
!! GGAAGTTTTGTGGAAGAATT+AGG + chr2_1:42208410-42208429 Msa0208040:intron 35.0%
! AGAAACAGTTAGCTTGAGAA+AGG + chr2_1:42208504-42208523 Msa0208040:CDS 35.0%
GCTGCAGTAATAAAGTTTAG+TGG + chr2_1:42208541-42208560 Msa0208040:CDS 35.0%
AAAGTTTAGTGGAAAACCCA+TGG + chr2_1:42208552-42208571 Msa0208040:CDS 35.0%
CGCTCCAATATCATTAAAGA+TGG + chr2_1:42208607-42208626 Msa0208040:CDS 35.0%
TCAAATGGCAACAATCAAGA+AGG - chr2_1:42208716-42208735 None:intergenic 35.0%
TTAGGTTAGGTTCAACAAGT+AGG - chr2_1:42209383-42209402 None:intergenic 35.0%
! CCATCTTGTCTAGAATTGTT+AGG - chr2_1:42209401-42209420 None:intergenic 35.0%
CCTAACAATTCTAGACAAGA+TGG + chr2_1:42209398-42209417 Msa0208040:intron 35.0%
CATGCATGTAAGAAGTAGTT+TGG - chr2_1:42209432-42209451 None:intergenic 35.0%
CTTTAATGTAATGCTGCCTA+TGG + chr2_1:42209546-42209565 Msa0208040:intron 35.0%
! GATTTTATAGGAGCTGAGAT+AGG - chr2_1:42209595-42209614 None:intergenic 35.0%
CTGTGGGACAATTATAATTG+GGG - chr2_1:42209701-42209720 None:intergenic 35.0%
CCTGTGGGACAATTATAATT+GGG - chr2_1:42209702-42209721 None:intergenic 35.0%
TCCTGTGGGACAATTATAAT+TGG - chr2_1:42209703-42209722 None:intergenic 35.0%
TCAAAATCCATATCTCCTGT+GGG - chr2_1:42209717-42209736 None:intergenic 35.0%
ATCAAAATCCATATCTCCTG+TGG - chr2_1:42209718-42209737 None:intergenic 35.0%
CATTTGCTTCATTTGTCTTG+TGG + chr2_1:42209787-42209806 Msa0208040:intron 35.0%
TGTGGTTTATGACATTGAAG+AGG + chr2_1:42209805-42209824 Msa0208040:intron 35.0%
!! TATGGAAAAACTTGGTGTGT+GGG - chr2_1:42209950-42209969 None:intergenic 35.0%
!! ATATGGAAAAACTTGGTGTG+TGG - chr2_1:42209951-42209970 None:intergenic 35.0%
! TGTTTGGAGCCAAAAATAGT+AGG + chr2_1:42210045-42210064 Msa0208040:three_prime_UTR 35.0%
AAATAAGGTGCATGGTCATT+AGG + chr2_1:42210089-42210108 Msa0208040:three_prime_UTR 35.0%
AATAGTGTACACTGTACAGT+AGG + chr2_1:42210138-42210157 Msa0208040:three_prime_UTR 35.0%
GTAGGCTTTCACTTATTCTT+TGG + chr2_1:42210156-42210175 Msa0208040:three_prime_UTR 35.0%
TGGTGCAAGTTGTAGGAAAT+GGG - chr2_1:42205704-42205723 None:intergenic 40.0%
!!! TTTTTTTTACGGTGTCTCCG+TGG - chr2_1:42205789-42205808 None:intergenic 40.0%
! TCCTCACCTCTTTGATGATA+AGG + chr2_1:42205908-42205927 Msa0208040:CDS 40.0%
! CCTCACCTCTTTGATGATAA+GGG + chr2_1:42205909-42205928 Msa0208040:CDS 40.0%
TCAGTTGCATTGGGTTAAAC+CGG + chr2_1:42206052-42206071 Msa0208040:intron 40.0%
AAGGAAAGAGAGAAACAGAC+CGG - chr2_1:42206074-42206093 None:intergenic 40.0%
! TCTTTCCTTTTCCCGTCTTA+TGG + chr2_1:42206085-42206104 Msa0208040:intron 40.0%
TCTATTAACGCAAAGCGTGT+CGG + chr2_1:42206429-42206448 Msa0208040:intron 40.0%
TGGGACACACTTAATGCTAT+TGG + chr2_1:42206456-42206475 Msa0208040:intron 40.0%
!! GACTTATGATCTCTGAAGCA+CGG - chr2_1:42206485-42206504 None:intergenic 40.0%
! CTGATTGAGTTGCTATAGAC+AGG + chr2_1:42206929-42206948 Msa0208040:intron 40.0%
! TGAAATTCATGCTGCTTCCA+TGG + chr2_1:42206987-42207006 Msa0208040:CDS 40.0%
!! AAGACCAATTCTGGTTTCCA+TGG - chr2_1:42207007-42207026 None:intergenic 40.0%
GTTCCTGTAAAGACCAATTC+TGG - chr2_1:42207016-42207035 None:intergenic 40.0%
ATGGGTGTTAACCCAGAAAA+TGG + chr2_1:42207043-42207062 Msa0208040:CDS 40.0%
! TAACACCAGTACTGGATAGT+TGG - chr2_1:42207095-42207114 None:intergenic 40.0%
!! TCCAGTACTGGTGTTATCTA+TGG + chr2_1:42207099-42207118 Msa0208040:intron 40.0%
ACCATAGATAACACCAGTAC+TGG - chr2_1:42207103-42207122 None:intergenic 40.0%
ATGCGACCTTAATTGCAGTA+GGG + chr2_1:42207190-42207209 Msa0208040:intron 40.0%
ATCTGACCCTACTGCAATTA+AGG - chr2_1:42207199-42207218 None:intergenic 40.0%
TTCGTAATCCTCAATTTCCC+AGG + chr2_1:42207300-42207319 Msa0208040:intron 40.0%
! CTCAATTTCCCAGGACTTTT+GGG + chr2_1:42207309-42207328 Msa0208040:intron 40.0%
TAGTGAATCCCAAAAGTCCT+GGG - chr2_1:42207320-42207339 None:intergenic 40.0%
TTAGTGAATCCCAAAAGTCC+TGG - chr2_1:42207321-42207340 None:intergenic 40.0%
ACAAATGGAGACAAGCTATC+TGG + chr2_1:42207922-42207941 Msa0208040:CDS 40.0%
CAAATGGAGACAAGCTATCT+GGG + chr2_1:42207923-42207942 Msa0208040:CDS 40.0%
CTTTAATGATGTTGCTGGGT+AGG + chr2_1:42207954-42207973 Msa0208040:intron 40.0%
GTGAATACAGGAGTAGTCAT+CGG - chr2_1:42208106-42208125 None:intergenic 40.0%
GTTCCAAGAGATACATGTCT+TGG + chr2_1:42208242-42208261 Msa0208040:intron 40.0%
AAGCCAAGACATGTATCTCT+TGG - chr2_1:42208248-42208267 None:intergenic 40.0%
AGAGATACATGTCTTGGCTT+AGG + chr2_1:42208248-42208267 Msa0208040:intron 40.0%
GGGAAATCAGAAATATAGGC+AGG - chr2_1:42208305-42208324 None:intergenic 40.0%
TTCCCGCTTCAGACAAATAA+AGG + chr2_1:42208320-42208339 Msa0208040:intron 40.0%
TCCCGCTTCAGACAAATAAA+GGG + chr2_1:42208321-42208340 Msa0208040:intron 40.0%
! ACCCTTTATTTGTCTGAAGC+GGG - chr2_1:42208325-42208344 None:intergenic 40.0%
! GTTAGCTTGAGAAAGGTAGA+AGG + chr2_1:42208511-42208530 Msa0208040:CDS 40.0%
TTCGACCTGGATCATTGTAA+CGG - chr2_1:42208663-42208682 None:intergenic 40.0%
TCGAACATGGTCCTTCATAA+TGG + chr2_1:42208678-42208697 Msa0208040:CDS 40.0%
TTCGCAGCATACCATTATGA+AGG - chr2_1:42208692-42208711 None:intergenic 40.0%
AGTAAAAAAAAAGGGCAGCC+CGG + chr2_1:42208890-42208909 Msa0208040:intron 40.0%
CGTACAATACACCAATTGGT+GGG - chr2_1:42208930-42208949 None:intergenic 40.0%
TAGTAAAAAAAAGGGCAGCC+CGG + chr2_1:42209010-42209029 Msa0208040:intron 40.0%
CGTACAATACACCAATTGGT+GGG - chr2_1:42208930-42208949 None:intergenic 40.0%
GTTGTTGTCAAGTGACTGAA+AGG - chr2_1:42209124-42209143 None:intergenic 40.0%
ACAACTTTACCGTTATGCCA+AGG + chr2_1:42209139-42209158 Msa0208040:intron 40.0%
AGAAGTGATTCCCTGATAGA+TGG + chr2_1:42209221-42209240 Msa0208040:intron 40.0%
GAAGTGATTCCCTGATAGAT+GGG + chr2_1:42209222-42209241 Msa0208040:intron 40.0%
GGAACTTCAAATCCATCAAG+AGG - chr2_1:42209455-42209474 None:intergenic 40.0%
!! GCTCTACAAGCCGATTTTAT+AGG - chr2_1:42209607-42209626 None:intergenic 40.0%
CCCAATTATAATTGTCCCAC+AGG + chr2_1:42209699-42209718 Msa0208040:intron 40.0%
TAATTGTCCCACAGGAGATA+TGG + chr2_1:42209707-42209726 Msa0208040:intron 40.0%
! AGAGGAATGAAGTGCTCATT+TGG + chr2_1:42209823-42209842 Msa0208040:intron 40.0%
TTGGCTAGATGACTTCTCAT+TGG + chr2_1:42209842-42209861 Msa0208040:CDS 40.0%
CAGATACAAGGAGTGATGTT+TGG + chr2_1:42210029-42210048 Msa0208040:three_prime_UTR 40.0%
GCAAGTTGTAGGAAATGGGT+GGG - chr2_1:42205700-42205719 None:intergenic 45.0%
TGCAAGTTGTAGGAAATGGG+TGG - chr2_1:42205701-42205720 None:intergenic 45.0%
GTGGTGCAAGTTGTAGGAAA+TGG - chr2_1:42205705-42205724 None:intergenic 45.0%
CTACAACTTGCACCACTTTC+CGG + chr2_1:42205709-42205728 Msa0208040:CDS 45.0%
GTAGTTGTGGATGTTGAAGG+CGG - chr2_1:42205745-42205764 None:intergenic 45.0%
AGGGTAGTTGTGGATGTTGA+AGG - chr2_1:42205748-42205767 None:intergenic 45.0%
CCCTTATCATCAAAGAGGTG+AGG - chr2_1:42205912-42205931 None:intergenic 45.0%
AGCCTCAGTTTCAGTTGCAT+TGG + chr2_1:42206042-42206061 Msa0208040:intron 45.0%
GCCTCAGTTTCAGTTGCATT+GGG + chr2_1:42206043-42206062 Msa0208040:intron 45.0%
ACCCAATGCAACTGAAACTG+AGG - chr2_1:42206047-42206066 None:intergenic 45.0%
GCTTCCATGGAAACCAGAAT+TGG + chr2_1:42207000-42207019 Msa0208040:CDS 45.0%
!! TGGCAAGTTTTGTAGCCATG+TGG + chr2_1:42207063-42207082 Msa0208040:CDS 45.0%
GATGCGACCTTAATTGCAGT+AGG + chr2_1:42207189-42207208 Msa0208040:intron 45.0%
CCAAAAGTCCTGGGAAATTG+AGG - chr2_1:42207311-42207330 None:intergenic 45.0%
! CCTCAATTTCCCAGGACTTT+TGG + chr2_1:42207308-42207327 Msa0208040:intron 45.0%
GACAAGCTATCTGGGAATAC+CGG + chr2_1:42207931-42207950 Msa0208040:CDS 45.0%
! ACCGGCTTTAATGATGTTGC+TGG + chr2_1:42207949-42207968 Msa0208040:CDS 45.0%
CCCAGCAACATCATTAAAGC+CGG - chr2_1:42207953-42207972 None:intergenic 45.0%
! CCGGCTTTAATGATGTTGCT+GGG + chr2_1:42207950-42207969 Msa0208040:CDS 45.0%
TCGATGGCTTGAGTGAATAC+AGG - chr2_1:42208118-42208137 None:intergenic 45.0%
CAGAAATATAGGCAGGTGCA+AGG - chr2_1:42208298-42208317 None:intergenic 45.0%
CTGTTCATTCTTGCATCCCT+AGG - chr2_1:42208354-42208373 None:intergenic 45.0%
AGCTTGAGAAAGGTAGAAGG+AGG + chr2_1:42208514-42208533 Msa0208040:CDS 45.0%
GTTTAGTGGAAAACCCATGG+AGG + chr2_1:42208555-42208574 Msa0208040:CDS 45.0%
TCGCGAACAATATCCTCCAT+GGG - chr2_1:42208571-42208590 None:intergenic 45.0%
TTCGCGAACAATATCCTCCA+TGG - chr2_1:42208572-42208591 None:intergenic 45.0%
GGAGGATATTGTTCGCGAAA+AGG + chr2_1:42208573-42208592 Msa0208040:CDS 45.0%
TCGACCTGGATCATTGTAAC+GGG - chr2_1:42208662-42208681 None:intergenic 45.0%
ACAATGATCCAGGTCGAACA+TGG + chr2_1:42208665-42208684 Msa0208040:CDS 45.0%
!!! GCCAGAGCCTTGTTTTCTAA+GGG + chr2_1:42208789-42208808 Msa0208040:intron 45.0%
!!! CCAGAGCCTTGTTTTCTAAG+GGG + chr2_1:42208790-42208809 Msa0208040:intron 45.0%
GTCACTCCCCTTAGAAAACA+AGG - chr2_1:42208799-42208818 None:intergenic 45.0%
GTAAAAAAAAAGGGCAGCCC+GGG + chr2_1:42208891-42208910 Msa0208040:intron 45.0%
GCGTACAATACACCAATTGG+TGG - chr2_1:42208931-42208950 None:intergenic 45.0%
GCTGCGTACAATACACCAAT+TGG - chr2_1:42208934-42208953 None:intergenic 45.0%
AGTAAAAAAAAGGGCAGCCC+GGG + chr2_1:42209011-42209030 Msa0208040:intron 45.0%
GCGTACAATACACCAATTGG+TGG - chr2_1:42208931-42208950 None:intergenic 45.0%
GCTGCGTACAATACACCAAT+TGG - chr2_1:42208934-42208953 None:intergenic 45.0%
TCAAGTGACTGAAAGGTCAC+GGG - chr2_1:42209117-42209136 None:intergenic 45.0%
GTCAAGTGACTGAAAGGTCA+CGG - chr2_1:42209118-42209137 None:intergenic 45.0%
TAATCTCTAATGGGGAGCCT+TGG - chr2_1:42209159-42209178 None:intergenic 45.0%
CTGCTCTAACCCATCTATCA+GGG - chr2_1:42209234-42209253 None:intergenic 45.0%
TCTGCTCTAACCCATCTATC+AGG - chr2_1:42209235-42209254 None:intergenic 45.0%
CAAGTAGGACTGATCACAAG+TGG - chr2_1:42209368-42209387 None:intergenic 45.0%
CTTACATGCATGCCTCTTGA+TGG + chr2_1:42209440-42209459 Msa0208040:intron 45.0%
!! TAAAATCGGCTTGTAGAGCG+AGG + chr2_1:42209608-42209627 Msa0208040:intron 45.0%
!! AAAATCGGCTTGTAGAGCGA+GGG + chr2_1:42209609-42209628 Msa0208040:intron 45.0%
!!! TGTATAATTTTTTTTTTTTT+TGG + chr2_1:42206818-42206837 Msa0208040:intron 5.0%
AGGAAATGGGTGGGAGAGAA+TGG - chr2_1:42205691-42205710 None:intergenic 50.0%
CGGAAAGTGGTGCAAGTTGT+AGG - chr2_1:42205711-42205730 None:intergenic 50.0%
GAAGAAGTGGAGGGTAGTTG+TGG - chr2_1:42205758-42205777 None:intergenic 50.0%
! TTTTTACGGTGTCTCCGTGG+TGG - chr2_1:42205786-42205805 None:intergenic 50.0%
CATTACCACGTGTCGTACAC+TGG - chr2_1:42206656-42206675 None:intergenic 50.0%
CATCGGTATCTTCTCTGCTG+TGG - chr2_1:42208089-42208108 None:intergenic 50.0%
! TAACGGGCAAGCAAACAACC+AGG - chr2_1:42208646-42208665 None:intergenic 50.0%
CTTGCCCGTTACAATGATCC+AGG + chr2_1:42208655-42208674 Msa0208040:CDS 50.0%
ATGAAGGACCATGTTCGACC+TGG - chr2_1:42208676-42208695 None:intergenic 50.0%
!!! GGCCAGAGCCTTGTTTTCTA+AGG + chr2_1:42208788-42208807 Msa0208040:intron 50.0%
CCCCTTAGAAAACAAGGCTC+TGG - chr2_1:42208793-42208812 None:intergenic 50.0%
AATGGGGAGCCTTGGCATAA+CGG - chr2_1:42209151-42209170 None:intergenic 50.0%
CTGATCACAAGTGGTCTGTC+TGG - chr2_1:42209359-42209378 None:intergenic 50.0%
TGGGTGGGAGAGAATGGAAG+TGG - chr2_1:42205685-42205704 None:intergenic 55.0%
TGGATGTTGAAGGCGGAGGT+TGG - chr2_1:42205738-42205757 None:intergenic 55.0%
GTTGTGGATGTTGAAGGCGG+AGG - chr2_1:42205742-42205761 None:intergenic 55.0%
GTGGCTGGAGAAGAAGTGGA+GGG - chr2_1:42205767-42205786 None:intergenic 55.0%
CACTTCTTCTCCAGCCACCA+CGG + chr2_1:42205769-42205788 Msa0208040:CDS 55.0%
CATGTCCAGTGTACGACACG+TGG + chr2_1:42206648-42206667 Msa0208040:intron 55.0%
GCAGGTGCAAGGCACAAACA+TGG - chr2_1:42208287-42208306 None:intergenic 55.0%
! GATGGTCTGAAACCTCAGCC+TGG + chr2_1:42208625-42208644 Msa0208040:CDS 55.0%
GCAAGCAAACAACCAGGCTG+AGG - chr2_1:42208640-42208659 None:intergenic 55.0%
CAATTGGTGGGAGCCTTTCC+AGG - chr2_1:42208918-42208937 None:intergenic 55.0%
CTGGAAAGGCTCCCACCAAT+TGG + chr2_1:42208916-42208935 Msa0208040:intron 55.0%
CAATTGGTGGGAGCCTTTCC+AGG - chr2_1:42208918-42208937 None:intergenic 55.0%
CTGGAAAGGCTCCCACCAAT+TGG + chr2_1:42208916-42208935 Msa0208040:intron 55.0%
GGTGGCTGGAGAAGAAGTGG+AGG - chr2_1:42205768-42205787 None:intergenic 60.0%
CGTGGTGGCTGGAGAAGAAG+TGG - chr2_1:42205771-42205790 None:intergenic 60.0%
ACGCAAAGCGTGTCGGACAC+TGG + chr2_1:42206436-42206455 Msa0208040:intron 60.0%
CGCAAAGCGTGTCGGACACT+GGG + chr2_1:42206437-42206456 Msa0208040:intron 60.0%
! GGAGGTTGGTCGCCGGAAAG+TGG - chr2_1:42205724-42205743 None:intergenic 65.0%
! TGAAGGCGGAGGTTGGTCGC+CGG - chr2_1:42205731-42205750 None:intergenic 65.0%
TACGGTGTCTCCGTGGTGGC+TGG - chr2_1:42205782-42205801 None:intergenic 65.0%
AAAAAGGGCAGCCCGGGTCC+TGG + chr2_1:42208897-42208916 Msa0208040:intron 65.0%
TGGGAGCCTTTCCAGGACCC+GGG - chr2_1:42208911-42208930 None:intergenic 65.0%
GTGGGAGCCTTTCCAGGACC+CGG - chr2_1:42208912-42208931 None:intergenic 65.0%
AAAAAGGGCAGCCCGGGTCC+TGG + chr2_1:42208897-42208916 Msa0208040:intron 65.0%
TGGGAGCCTTTCCAGGACCC+GGG - chr2_1:42208911-42208930 None:intergenic 65.0%
GTGGGAGCCTTTCCAGGACC+CGG - chr2_1:42208912-42208931 None:intergenic 65.0%
GGGCAGCCCGGGTCCTGGAA+AGG + chr2_1:42208902-42208921 Msa0208040:intron 75.0%
GGGCAGCCCGGGTCCTGGAA+AGG + chr2_1:42208902-42208921 Msa0208040:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 42205678 42210248 42205678 ID=Msa0208040;Name=Msa0208040
chr2_1 mRNA 42205678 42210248 42205678 ID=Msa0208040-mRNA-1;Parent=Msa0208040;Name=Msa0208040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.66|1|0.75|0.66|9|379|354
chr2_1 exon 42205678 42205839 42205678 ID=Msa0208040-mRNA-1:exon:12676;Parent=Msa0208040-mRNA-1
chr2_1 exon 42205849 42206002 42205849 ID=Msa0208040-mRNA-1:exon:12677;Parent=Msa0208040-mRNA-1
chr2_1 exon 42206951 42207084 42206951 ID=Msa0208040-mRNA-1:exon:12678;Parent=Msa0208040-mRNA-1
chr2_1 exon 42207322 42207390 42207322 ID=Msa0208040-mRNA-1:exon:12679;Parent=Msa0208040-mRNA-1
chr2_1 exon 42207501 42207572 42207501 ID=Msa0208040-mRNA-1:exon:12680;Parent=Msa0208040-mRNA-1
chr2_1 exon 42207889 42207971 42207889 ID=Msa0208040-mRNA-1:exon:12681;Parent=Msa0208040-mRNA-1
chr2_1 exon 42208066 42208197 42208066 ID=Msa0208040-mRNA-1:exon:12682;Parent=Msa0208040-mRNA-1
chr2_1 exon 42208486 42208699 42208486 ID=Msa0208040-mRNA-1:exon:12683;Parent=Msa0208040-mRNA-1
chr2_1 exon 42209825 42210248 42209825 ID=Msa0208040-mRNA-1:exon:12684;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42205678 42205839 42205678 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42205849 42206002 42205849 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42206951 42207084 42206951 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42207322 42207390 42207322 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42207501 42207572 42207501 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42207889 42207971 42207889 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42208066 42208197 42208066 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42208486 42208699 42208486 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 CDS 42209825 42209869 42209825 ID=Msa0208040-mRNA-1:cds;Parent=Msa0208040-mRNA-1
chr2_1 three_prime_UTR 42209870 42210248 42209870 ID=Msa0208040-mRNA-1:three_prime_utr;Parent=Msa0208040-mRNA-1
Gene Sequence

>Msa0208040

ATGGCCACTTCCATTCTCTCCCACCCATTTCCTACAACTTGCACCACTTTCCGGCGACCAACCTCCGCCTTCAACATCCACAACTACCCTCCACTTCTTCTCCAGCCACCACGGAGACACCGTAAAAAAAATCACATTAAATGGGCCATTAATCTGAGCTTAAGTACACAAAAATCGAGTTTTGATTTGCAGCAACTTGTTGCGTTTCTTTACGACGATCTTCCTCACCTCTTTGATGATAAGGGTATTGATAAAAATGCTTATGATGAACGTGTCTTCTTTCGTGACCCAATTACTAAGCATGATGATTTGAGTGGACCTTATGAAATAACTACAAGATGGACCATGGTTATGAAATTCATGCTGCTTCCATGGAAACCAGAATTGGTCTTTACAGGAACATCTGTTATGGGTGTTAACCCAGAAAATGGCAAGTTTTGTAGCCATGTGGACTTTTGGGATTCACTAAAGAAAAATGACTATTTTTCATTTGAAGGTTTATTGGAAGTATTCAAACAGTTGAGGATTTACAAGACACCAGATTTGGAATCACCCAAATATCAAATATTAAAACGGACAGCAAATTATGAGGTTAGACAGTATGATCCATTCGTAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGAATACCGGCTTTAATGATGTTGCTGGGTATATATTTGGAAAGAATTCCACAGCAGAGAAGATACCGATGACTACTCCTGTATTCACTCAAGCCATCGATATTGACTTGTCCAAAGTCTCAATCCAAATAGTTCTTCCATCAGACAAAGAAACAAAGAGTTTACCAAATCCTAATCAAGAAACAGTTAGCTTGAGAAAGGTAGAAGGAGGCATTGCTGCAGTAATAAAGTTTAGTGGAAAACCCATGGAGGATATTGTTCGCGAAAAGGAGAAAATTTTACGCTCCAATATCATTAAAGATGGTCTGAAACCTCAGCCTGGTTGTTTGCTTGCCCGTTACAATGATCCAGGTCGAACATGGTCCTTCATAATGAGGAATGAAGTGCTCATTTGGCTAGATGACTTCTCATTGGATTAG

Protein sequence

>Msa0208040

MATSILSHPFPTTCTTFRRPTSAFNIHNYPPLLLQPPRRHRKKNHIKWAINLSLSTQKSSFDLQQLVAFLYDDLPHLFDDKGIDKNAYDERVFFRDPITKHDDLSGPYEITTRWTMVMKFMLLPWKPELVFTGTSVMGVNPENGKFCSHVDFWDSLKKNDYFSFEGLLEVFKQLRIYKTPDLESPKYQILKRTANYEVRQYDPFVVVETNGDKLSGNTGFNDVAGYIFGKNSTAEKIPMTTPVFTQAIDIDLSKVSIQIVLPSDKETKSLPNPNQETVSLRKVEGGIAAVIKFSGKPMEDIVREKEKILRSNIIKDGLKPQPGCLLARYNDPGRTWSFIMRNEVLIWLDDFSLD*