AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375840 MtrunA17_Chr4g0068801 93.548 186 2 6 1 178 1 184 1.33e-88 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATCTACCAACAATTTC+AGG 0.178994 tig0019745:+138879 None:intergenic
TAAAATATTGTAGGAGGATT+TGG 0.187310 tig0019745:-139398 Msa1375840:intron
TATTATCATGCAACATTGTT+AGG 0.247228 tig0019745:-139033 Msa1375840:three_prime_UTR
CCTCTTCAGCGTTGCCTAAA+GGG 0.272875 tig0019745:+139356 None:intergenic
AATTGTTGGTAGATTTCTTC+TGG 0.288027 tig0019745:-138874 Msa1375840:three_prime_UTR
AAAATATTGTAGGAGGATTT+GGG 0.329652 tig0019745:-139397 Msa1375840:intron
AATAATTGAAATTCTATGTT+CGG 0.352406 tig0019745:+140580 None:intergenic
CTGCCGAGGCTCCACCAAAA+AGG 0.375020 tig0019745:-139258 Msa1375840:CDS
TCCTCTTCAGCGTTGCCTAA+AGG 0.387128 tig0019745:+139355 None:intergenic
GACTACCTTGTGCGCCCTTT+AGG 0.392973 tig0019745:-139370 Msa1375840:CDS
TCATCATCGTCGTCGTCGTC+AGG 0.396532 tig0019745:+140286 None:intergenic
TAGGATTTCTAGTTTCTGTC+TGG 0.412200 tig0019745:-139014 Msa1375840:three_prime_UTR
ATTTGTGAATTTCAAGATGA+AGG 0.412616 tig0019745:-140560 Msa1375840:exon
GGGCTTTGTTCATTTATATC+CGG 0.425547 tig0019745:+140838 None:intergenic
ATAATTGAAATTCTATGTTC+GGG 0.429235 tig0019745:+140581 None:intergenic
TTCTGACACCCTGAAATTGT+TGG 0.438895 tig0019745:-138888 Msa1375840:three_prime_UTR
TCTGTAGGGCTTGACTCAAT+TGG 0.440056 tig0019745:+140971 None:intergenic
ATTTCTAGTTTCTGTCTGGT+TGG 0.442891 tig0019745:-139010 Msa1375840:three_prime_UTR
TCGATGACGTGGCGTTTAAT+CGG 0.445551 tig0019745:+140722 None:intergenic
GTTGGTGCATAGTTGATTGT+TGG 0.446195 tig0019745:-138992 Msa1375840:three_prime_UTR
TTTAACTGTCACTCGAGTTA+GGG 0.459891 tig0019745:+140806 None:intergenic
GGATAAAGTTGAGGAGAAAG+AGG 0.478281 tig0019745:-140521 Msa1375840:CDS
GACGACGACGAGGATGCTCC+TGG 0.492791 tig0019745:-140379 Msa1375840:CDS
GAAGCAGGTGCCGGTGAGCA+AGG 0.504426 tig0019745:-140316 Msa1375840:CDS
GAATTTCAAGATGAAGGTTA+CGG 0.508118 tig0019745:-140554 Msa1375840:exon
TCGATCGAAAATTGAGCACT+AGG 0.513317 tig0019745:+140609 None:intergenic
AGATAAGATGATTAGGTCCA+TGG 0.519017 tig0019745:-139079 Msa1375840:three_prime_UTR
TGTTGACAGAAGACGTGGGC+CGG 0.524711 tig0019745:-140857 Msa1375840:five_prime_UTR
TCATCGTCGTCGTCTCCGCC+AGG 0.527550 tig0019745:+140361 None:intergenic
CGTTGCCTAAAGGGCGCACA+AGG 0.528921 tig0019745:+139365 None:intergenic
ATATCGTACTAGAGTCTGTA+GGG 0.529554 tig0019745:+140957 None:intergenic
ATATTGATCTAATTGACCTA+TGG 0.530077 tig0019745:+139124 None:intergenic
GAAATCTACCAACAATTTCA+GGG 0.532802 tig0019745:+138880 None:intergenic
CCCTTTAGGCAACGCTGAAG+AGG 0.547020 tig0019745:-139356 Msa1375840:CDS
AATATCGTACTAGAGTCTGT+AGG 0.555789 tig0019745:+140956 None:intergenic
CGCGTGAATTCGTGTCTCAA+CGG 0.564203 tig0019745:-140697 Msa1375840:five_prime_UTR
TTGGGTCTATTATATGCTTG+AGG 0.568201 tig0019745:-139161 Msa1375840:three_prime_UTR
ACAGTTAAAACAAAAGTCGC+GGG 0.573290 tig0019745:-140792 Msa1375840:five_prime_UTR
TTGTTGGTTAAACTTCTGCT+AGG 0.575182 tig0019745:-138976 Msa1375840:three_prime_UTR
GAAGGTTACGGAAGATTCGA+AGG 0.578457 tig0019745:-140542 Msa1375840:CDS
AGACGACGACGATGAGGATG+AGG 0.579234 tig0019745:-140353 Msa1375840:CDS
GACGACGATGATGAAGAAGC+AGG 0.586669 tig0019745:-140331 Msa1375840:CDS
GATGATGAAGAAGCAGGTGC+CGG 0.587393 tig0019745:-140325 Msa1375840:CDS
TGAGAACGACGACGATGATG+AGG 0.590523 tig0019745:-140266 Msa1375840:CDS
GAAAATGGTGAGGAAGATGA+AGG 0.597459 tig0019745:-139304 Msa1375840:CDS
GACAGTTAAAACAAAAGTCG+CGG 0.605340 tig0019745:-140793 Msa1375840:five_prime_UTR
TGCTGATGAAGATGATGAGA+AGG 0.606327 tig0019745:-139281 Msa1375840:CDS
GGATGATGACGACGGTGATG+AGG 0.611884 tig0019745:-140419 Msa1375840:CDS
AGGCTCACCACCTTGCTCAC+CGG 0.612942 tig0019745:+140306 None:intergenic
AGAGTAACTGTAGAAACGAA+GGG 0.613522 tig0019745:-140658 Msa1375840:five_prime_UTR
GAGAGTAACTGTAGAAACGA+AGG 0.614467 tig0019745:-140659 Msa1375840:five_prime_UTR
GTAGACGACGGCGATGATGA+CGG 0.617388 tig0019745:-140448 Msa1375840:CDS
TTTAGGCAACGCTGAAGAGG+AGG 0.618802 tig0019745:-139353 Msa1375840:CDS
AGATGATGAGAAGGCTGCCG+AGG 0.621447 tig0019745:-139272 Msa1375840:CDS
GAGAGAACGAAACAACTCCA+TGG 0.624719 tig0019745:+139062 None:intergenic
GGACTTAACAAGTCAACCAT+AGG 0.625038 tig0019745:-139140 Msa1375840:three_prime_UTR
TGACGTGGCGTTTAATCGGA+CGG 0.632327 tig0019745:+140726 None:intergenic
CGGCGATGATGACGGAGACG+AGG 0.637223 tig0019745:-140440 Msa1375840:CDS
TGATGAGGAGAACGATGAAG+AGG 0.641685 tig0019745:-140251 Msa1375840:intron
AGATTCGAAGGATAAAGTTG+AGG 0.642562 tig0019745:-140530 Msa1375840:CDS
TGAAGAGGATGACGACGACG+AGG 0.647915 tig0019745:-140389 Msa1375840:CDS
ATTCACGCGGATCGATGACG+TGG 0.649055 tig0019745:+140711 None:intergenic
TGGCGGAGACGACGACGATG+AGG 0.656270 tig0019745:-140359 Msa1375840:CDS
TGATGAGGACGATGATGAAG+AGG 0.657688 tig0019745:-140404 Msa1375840:CDS
TGAACCGGAAGAAAATGGTG+AGG 0.662859 tig0019745:-139314 Msa1375840:CDS
TTGAGTGATGAAGATGACGA+AGG 0.667428 tig0019745:-140490 Msa1375840:CDS
GCAGGTGCCGGTGAGCAAGG+TGG 0.668286 tig0019745:-140313 Msa1375840:CDS
TGACGAAGGAGATGATTCCG+CGG 0.677137 tig0019745:-140476 Msa1375840:CDS
GATGATTCAGATGATGACGA+TGG 0.684292 tig0019745:-139217 Msa1375840:CDS
GATTCAGATGATGACGATGG+AGG 0.693060 tig0019745:-139214 Msa1375840:CDS
TCCGCGGAGGAAGTAGACGA+CGG 0.695976 tig0019745:-140460 Msa1375840:CDS
GATAATGTGATTACGCACTG+CGG 0.701490 tig0019745:+140767 None:intergenic
CGAAGGAGATGATTCCGCGG+AGG 0.706879 tig0019745:-140473 Msa1375840:CDS
GACGACGAGGATGCTCCTGG+CGG 0.708780 tig0019745:-140376 Msa1375840:CDS
CGTTGAGACACGAATTCACG+CGG 0.708980 tig0019745:+140698 None:intergenic
GCCGTCGTCTACTTCCTCCG+CGG 0.720282 tig0019745:+140459 None:intergenic
GGAGACGAGGATGATGACGA+CGG 0.760759 tig0019745:-140427 Msa1375840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTGTTTTTTAAATAA+AGG - tig0019745:138901-138920 Msa1375840:three_prime_UTR 10.0%
!!! TCAATTTGTTTTTTAAATAA+AGG - tig0019745:138901-138920 Msa1375840:three_prime_UTR 10.0%
!! AATAATTGAAATTCTATGTT+CGG + tig0019745:139228-139247 None:intergenic 15.0%
!! TAAAACAAGTATATATAAGT+CGG + tig0019745:139583-139602 None:intergenic 15.0%
!! TTAACAATTTCAACAAATTA+GGG + tig0019745:139612-139631 None:intergenic 15.0%
!! ATTAACAATTTCAACAAATT+AGG + tig0019745:139613-139632 None:intergenic 15.0%
!!! TAATTTTTCAATTTTGAGTT+AGG - tig0019745:139694-139713 Msa1375840:intron 15.0%
!!! AATTTTTCAATTTTGAGTTA+GGG - tig0019745:139695-139714 Msa1375840:intron 15.0%
!!! ATTTTATCTTAGTAATTTGT+AGG - tig0019745:140871-140890 Msa1375840:five_prime_UTR 15.0%
!! AATAATTGAAATTCTATGTT+CGG + tig0019745:139228-139247 None:intergenic 15.0%
!! TAAAACAAGTATATATAAGT+CGG + tig0019745:139583-139602 None:intergenic 15.0%
!! TTAACAATTTCAACAAATTA+GGG + tig0019745:139612-139631 None:intergenic 15.0%
!! ATTAACAATTTCAACAAATT+AGG + tig0019745:139613-139632 None:intergenic 15.0%
!!! TAATTTTTCAATTTTGAGTT+AGG - tig0019745:139694-139713 Msa1375840:intron 15.0%
!!! AATTTTTCAATTTTGAGTTA+GGG - tig0019745:139695-139714 Msa1375840:intron 15.0%
!!! ATTTTATCTTAGTAATTTGT+AGG - tig0019745:140871-140890 Msa1375840:five_prime_UTR 15.0%
!! ATAATTGAAATTCTATGTTC+GGG + tig0019745:139227-139246 None:intergenic 20.0%
!! GTACTTATAAAAAATGATAG+AGG - tig0019745:140034-140053 Msa1375840:intron 20.0%
!! TAAGTGAAATTGAATTATAG+AGG + tig0019745:140381-140400 None:intergenic 20.0%
!! ATAATTCAATTTCACTTATG+AGG - tig0019745:140383-140402 Msa1375840:CDS 20.0%
!! TTATGAGGATAAAATATTGT+AGG - tig0019745:140398-140417 Msa1375840:CDS 20.0%
!! ATAATTGAAATTCTATGTTC+GGG + tig0019745:139227-139246 None:intergenic 20.0%
!! GTACTTATAAAAAATGATAG+AGG - tig0019745:140034-140053 Msa1375840:intron 20.0%
!! TAAGTGAAATTGAATTATAG+AGG + tig0019745:140381-140400 None:intergenic 20.0%
!! ATAATTCAATTTCACTTATG+AGG - tig0019745:140383-140402 Msa1375840:CDS 20.0%
!! TTATGAGGATAAAATATTGT+AGG - tig0019745:140398-140417 Msa1375840:CDS 20.0%
! ATTTGTGAATTTCAAGATGA+AGG - tig0019745:139245-139264 Msa1375840:CDS 25.0%
! TGTTCGTTAATTTCATTCAT+AGG - tig0019745:139646-139665 Msa1375840:intron 25.0%
! TTAGAATTATGCAGTATGTT+TGG - tig0019745:140009-140028 Msa1375840:intron 25.0%
! TAAAATATTGTAGGAGGATT+TGG - tig0019745:140407-140426 Msa1375840:CDS 25.0%
! AAAATATTGTAGGAGGATTT+GGG - tig0019745:140408-140427 Msa1375840:CDS 25.0%
! ATATTGATCTAATTGACCTA+TGG + tig0019745:140684-140703 None:intergenic 25.0%
!! TTTTCAGAGATAAGATGATT+AGG - tig0019745:140719-140738 Msa1375840:five_prime_UTR 25.0%
! TATTATCATGCAACATTGTT+AGG - tig0019745:140772-140791 Msa1375840:five_prime_UTR 25.0%
! ATTTGTGAATTTCAAGATGA+AGG - tig0019745:139245-139264 Msa1375840:CDS 25.0%
! TGTTCGTTAATTTCATTCAT+AGG - tig0019745:139646-139665 Msa1375840:intron 25.0%
! TTAGAATTATGCAGTATGTT+TGG - tig0019745:140009-140028 Msa1375840:intron 25.0%
! TAAAATATTGTAGGAGGATT+TGG - tig0019745:140407-140426 Msa1375840:CDS 25.0%
! AAAATATTGTAGGAGGATTT+GGG - tig0019745:140408-140427 Msa1375840:CDS 25.0%
! ATATTGATCTAATTGACCTA+TGG + tig0019745:140684-140703 None:intergenic 25.0%
!! TTTTCAGAGATAAGATGATT+AGG - tig0019745:140719-140738 Msa1375840:five_prime_UTR 25.0%
! TATTATCATGCAACATTGTT+AGG - tig0019745:140772-140791 Msa1375840:five_prime_UTR 25.0%
GAATTTCAAGATGAAGGTTA+CGG - tig0019745:139251-139270 Msa1375840:CDS 30.0%
TGCTGCAATTAGTAGTTAAA+AGG + tig0019745:140086-140105 None:intergenic 30.0%
ACATGTTATTGAGTTCATAG+AGG + tig0019745:140206-140225 None:intergenic 30.0%
GCAGCAAAATTGAATTATAC+AGG + tig0019745:140281-140300 None:intergenic 30.0%
TGAGGATAAAATATTGTAGG+AGG - tig0019745:140401-140420 Msa1375840:CDS 30.0%
ACCCTCAAAAAAATAGACTT+GGG - tig0019745:140626-140645 Msa1375840:five_prime_UTR 30.0%
!!! ACCCAAGTCTATTTTTTTGA+GGG + tig0019745:140630-140649 None:intergenic 30.0%
GAAATCTACCAACAATTTCA+GGG + tig0019745:140928-140947 None:intergenic 30.0%
AGAAATCTACCAACAATTTC+AGG + tig0019745:140929-140948 None:intergenic 30.0%
! AATTGTTGGTAGATTTCTTC+TGG - tig0019745:140931-140950 Msa1375840:five_prime_UTR 30.0%
GAATTTCAAGATGAAGGTTA+CGG - tig0019745:139251-139270 Msa1375840:CDS 30.0%
TGCTGCAATTAGTAGTTAAA+AGG + tig0019745:140086-140105 None:intergenic 30.0%
ACATGTTATTGAGTTCATAG+AGG + tig0019745:140206-140225 None:intergenic 30.0%
GCAGCAAAATTGAATTATAC+AGG + tig0019745:140281-140300 None:intergenic 30.0%
TGAGGATAAAATATTGTAGG+AGG - tig0019745:140401-140420 Msa1375840:CDS 30.0%
ACCCTCAAAAAAATAGACTT+GGG - tig0019745:140626-140645 Msa1375840:five_prime_UTR 30.0%
!!! ACCCAAGTCTATTTTTTTGA+GGG + tig0019745:140630-140649 None:intergenic 30.0%
GAAATCTACCAACAATTTCA+GGG + tig0019745:140928-140947 None:intergenic 30.0%
AGAAATCTACCAACAATTTC+AGG + tig0019745:140929-140948 None:intergenic 30.0%
! AATTGTTGGTAGATTTCTTC+TGG - tig0019745:140931-140950 Msa1375840:five_prime_UTR 30.0%
ATATCGTACTAGAGTCTGTA+GGG + tig0019745:138851-138870 None:intergenic 35.0%
AATATCGTACTAGAGTCTGT+AGG + tig0019745:138852-138871 None:intergenic 35.0%
! AATTTTGTTGACAGAAGACG+TGG - tig0019745:138943-138962 Msa1375840:three_prime_UTR 35.0%
! ATTTTGTTGACAGAAGACGT+GGG - tig0019745:138944-138963 Msa1375840:three_prime_UTR 35.0%
!! GGGCTTTGTTCATTTATATC+CGG + tig0019745:138970-138989 None:intergenic 35.0%
!!! TCGAGTTAGGGTTTTTTTCT+GGG + tig0019745:138990-139009 None:intergenic 35.0%
TTTAACTGTCACTCGAGTTA+GGG + tig0019745:139002-139021 None:intergenic 35.0%
!! TTTTAACTGTCACTCGAGTT+AGG + tig0019745:139003-139022 None:intergenic 35.0%
GACAGTTAAAACAAAAGTCG+CGG - tig0019745:139012-139031 Msa1375840:three_prime_UTR 35.0%
ACAGTTAAAACAAAAGTCGC+GGG - tig0019745:139013-139032 Msa1375840:three_prime_UTR 35.0%
AGAGTAACTGTAGAAACGAA+GGG - tig0019745:139147-139166 Msa1375840:three_prime_UTR 35.0%
AGATTCGAAGGATAAAGTTG+AGG - tig0019745:139275-139294 Msa1375840:CDS 35.0%
!!! TCAATTTTGAGTTAGGGTGA+AGG - tig0019745:139701-139720 Msa1375840:intron 35.0%
ACTACTAATTGCAGCATACT+TGG - tig0019745:140090-140109 Msa1375840:intron 35.0%
ATTATAGAGGTAGCAGAGAT+TGG + tig0019745:140368-140387 None:intergenic 35.0%
! AGCATCTAGTGATTTTGAAC+CGG - tig0019745:140476-140495 Msa1375840:CDS 35.0%
! GATTTTGAACCGGAAGAAAA+TGG - tig0019745:140486-140505 Msa1375840:CDS 35.0%
! TTATCTGACCTCTTCCTTTT+TGG + tig0019745:140564-140583 None:intergenic 35.0%
GACCCTCAAAAAAATAGACT+TGG - tig0019745:140625-140644 Msa1375840:five_prime_UTR 35.0%
!!! GACCCAAGTCTATTTTTTTG+AGG + tig0019745:140631-140650 None:intergenic 35.0%
TTGGGTCTATTATATGCTTG+AGG - tig0019745:140644-140663 Msa1375840:five_prime_UTR 35.0%
AGATAAGATGATTAGGTCCA+TGG - tig0019745:140726-140745 Msa1375840:five_prime_UTR 35.0%
!! TAGGATTTCTAGTTTCTGTC+TGG - tig0019745:140791-140810 Msa1375840:five_prime_UTR 35.0%
!! ATTTCTAGTTTCTGTCTGGT+TGG - tig0019745:140795-140814 Msa1375840:five_prime_UTR 35.0%
! TTGTTGGTTAAACTTCTGCT+AGG - tig0019745:140829-140848 Msa1375840:five_prime_UTR 35.0%
ATATCGTACTAGAGTCTGTA+GGG + tig0019745:138851-138870 None:intergenic 35.0%
AATATCGTACTAGAGTCTGT+AGG + tig0019745:138852-138871 None:intergenic 35.0%
! AATTTTGTTGACAGAAGACG+TGG - tig0019745:138943-138962 Msa1375840:three_prime_UTR 35.0%
! ATTTTGTTGACAGAAGACGT+GGG - tig0019745:138944-138963 Msa1375840:three_prime_UTR 35.0%
!! GGGCTTTGTTCATTTATATC+CGG + tig0019745:138970-138989 None:intergenic 35.0%
!!! TCGAGTTAGGGTTTTTTTCT+GGG + tig0019745:138990-139009 None:intergenic 35.0%
TTTAACTGTCACTCGAGTTA+GGG + tig0019745:139002-139021 None:intergenic 35.0%
!! TTTTAACTGTCACTCGAGTT+AGG + tig0019745:139003-139022 None:intergenic 35.0%
GACAGTTAAAACAAAAGTCG+CGG - tig0019745:139012-139031 Msa1375840:three_prime_UTR 35.0%
ACAGTTAAAACAAAAGTCGC+GGG - tig0019745:139013-139032 Msa1375840:three_prime_UTR 35.0%
AGAGTAACTGTAGAAACGAA+GGG - tig0019745:139147-139166 Msa1375840:three_prime_UTR 35.0%
AGATTCGAAGGATAAAGTTG+AGG - tig0019745:139275-139294 Msa1375840:CDS 35.0%
!!! TCAATTTTGAGTTAGGGTGA+AGG - tig0019745:139701-139720 Msa1375840:intron 35.0%
ACTACTAATTGCAGCATACT+TGG - tig0019745:140090-140109 Msa1375840:intron 35.0%
ATTATAGAGGTAGCAGAGAT+TGG + tig0019745:140368-140387 None:intergenic 35.0%
! AGCATCTAGTGATTTTGAAC+CGG - tig0019745:140476-140495 Msa1375840:CDS 35.0%
! GATTTTGAACCGGAAGAAAA+TGG - tig0019745:140486-140505 Msa1375840:CDS 35.0%
! TTATCTGACCTCTTCCTTTT+TGG + tig0019745:140564-140583 None:intergenic 35.0%
GACCCTCAAAAAAATAGACT+TGG - tig0019745:140625-140644 Msa1375840:five_prime_UTR 35.0%
!!! GACCCAAGTCTATTTTTTTG+AGG + tig0019745:140631-140650 None:intergenic 35.0%
TTGGGTCTATTATATGCTTG+AGG - tig0019745:140644-140663 Msa1375840:five_prime_UTR 35.0%
AGATAAGATGATTAGGTCCA+TGG - tig0019745:140726-140745 Msa1375840:five_prime_UTR 35.0%
!! TAGGATTTCTAGTTTCTGTC+TGG - tig0019745:140791-140810 Msa1375840:five_prime_UTR 35.0%
!! ATTTCTAGTTTCTGTCTGGT+TGG - tig0019745:140795-140814 Msa1375840:five_prime_UTR 35.0%
! TTGTTGGTTAAACTTCTGCT+AGG - tig0019745:140829-140848 Msa1375840:five_prime_UTR 35.0%
!!! CTCGAGTTAGGGTTTTTTTC+TGG + tig0019745:138991-139010 None:intergenic 40.0%
GATAATGTGATTACGCACTG+CGG + tig0019745:139041-139060 None:intergenic 40.0%
GAGAGTAACTGTAGAAACGA+AGG - tig0019745:139146-139165 Msa1375840:three_prime_UTR 40.0%
TCGATCGAAAATTGAGCACT+AGG + tig0019745:139199-139218 None:intergenic 40.0%
GGATAAAGTTGAGGAGAAAG+AGG - tig0019745:139284-139303 Msa1375840:CDS 40.0%
TTGAGTGATGAAGATGACGA+AGG - tig0019745:139315-139334 Msa1375840:CDS 40.0%
! TCTTCCTCACCATTTTCTTC+CGG + tig0019745:140498-140517 None:intergenic 40.0%
GAAAATGGTGAGGAAGATGA+AGG - tig0019745:140501-140520 Msa1375840:CDS 40.0%
TGCTGATGAAGATGATGAGA+AGG - tig0019745:140524-140543 Msa1375840:CDS 40.0%
! GATGATTCAGATGATGACGA+TGG - tig0019745:140588-140607 Msa1375840:five_prime_UTR 40.0%
GGACTTAACAAGTCAACCAT+AGG - tig0019745:140665-140684 Msa1375840:five_prime_UTR 40.0%
GTTGGTGCATAGTTGATTGT+TGG - tig0019745:140813-140832 Msa1375840:five_prime_UTR 40.0%
TTCTGACACCCTGAAATTGT+TGG - tig0019745:140917-140936 Msa1375840:five_prime_UTR 40.0%
!!! CTCGAGTTAGGGTTTTTTTC+TGG + tig0019745:138991-139010 None:intergenic 40.0%
GATAATGTGATTACGCACTG+CGG + tig0019745:139041-139060 None:intergenic 40.0%
GAGAGTAACTGTAGAAACGA+AGG - tig0019745:139146-139165 Msa1375840:three_prime_UTR 40.0%
TCGATCGAAAATTGAGCACT+AGG + tig0019745:139199-139218 None:intergenic 40.0%
GGATAAAGTTGAGGAGAAAG+AGG - tig0019745:139284-139303 Msa1375840:CDS 40.0%
TTGAGTGATGAAGATGACGA+AGG - tig0019745:139315-139334 Msa1375840:CDS 40.0%
! TCTTCCTCACCATTTTCTTC+CGG + tig0019745:140498-140517 None:intergenic 40.0%
GAAAATGGTGAGGAAGATGA+AGG - tig0019745:140501-140520 Msa1375840:CDS 40.0%
TGCTGATGAAGATGATGAGA+AGG - tig0019745:140524-140543 Msa1375840:CDS 40.0%
! GATGATTCAGATGATGACGA+TGG - tig0019745:140588-140607 Msa1375840:five_prime_UTR 40.0%
GGACTTAACAAGTCAACCAT+AGG - tig0019745:140665-140684 Msa1375840:five_prime_UTR 40.0%
GTTGGTGCATAGTTGATTGT+TGG - tig0019745:140813-140832 Msa1375840:five_prime_UTR 40.0%
TTCTGACACCCTGAAATTGT+TGG - tig0019745:140917-140936 Msa1375840:five_prime_UTR 40.0%
TCGATGACGTGGCGTTTAAT+CGG + tig0019745:139086-139105 None:intergenic 45.0%
GAAGGTTACGGAAGATTCGA+AGG - tig0019745:139263-139282 Msa1375840:CDS 45.0%
TGATGAGGACGATGATGAAG+AGG - tig0019745:139401-139420 Msa1375840:intron 45.0%
TGATGAGGAGAACGATGAAG+AGG - tig0019745:139554-139573 Msa1375840:intron 45.0%
TGAACCGGAAGAAAATGGTG+AGG - tig0019745:140491-140510 Msa1375840:CDS 45.0%
! TCTGACCTCTTCCTTTTTGG+TGG + tig0019745:140561-140580 None:intergenic 45.0%
! GATTCAGATGATGACGATGG+AGG - tig0019745:140591-140610 Msa1375840:five_prime_UTR 45.0%
GAGAGAACGAAACAACTCCA+TGG + tig0019745:140746-140765 None:intergenic 45.0%
TCGATGACGTGGCGTTTAAT+CGG + tig0019745:139086-139105 None:intergenic 45.0%
GAAGGTTACGGAAGATTCGA+AGG - tig0019745:139263-139282 Msa1375840:CDS 45.0%
TGATGAGGACGATGATGAAG+AGG - tig0019745:139401-139420 Msa1375840:intron 45.0%
TGATGAGGAGAACGATGAAG+AGG - tig0019745:139554-139573 Msa1375840:intron 45.0%
TGAACCGGAAGAAAATGGTG+AGG - tig0019745:140491-140510 Msa1375840:CDS 45.0%
! TCTGACCTCTTCCTTTTTGG+TGG + tig0019745:140561-140580 None:intergenic 45.0%
! GATTCAGATGATGACGATGG+AGG - tig0019745:140591-140610 Msa1375840:five_prime_UTR 45.0%
GAGAGAACGAAACAACTCCA+TGG + tig0019745:140746-140765 None:intergenic 45.0%
!!! AAAATTAAAAATACTTTTAA+AGG + tig0019745:139681-139700 None:intergenic 5.0%
!!! AAAATTAAAAATACTTTTAA+AGG + tig0019745:139681-139700 None:intergenic 5.0%
TGACGTGGCGTTTAATCGGA+CGG + tig0019745:139082-139101 None:intergenic 50.0%
CGTTGAGACACGAATTCACG+CGG + tig0019745:139110-139129 None:intergenic 50.0%
CGCGTGAATTCGTGTCTCAA+CGG - tig0019745:139108-139127 Msa1375840:three_prime_UTR 50.0%
TGACGAAGGAGATGATTCCG+CGG - tig0019745:139329-139348 Msa1375840:CDS 50.0%
GACGACGATGATGAAGAAGC+AGG - tig0019745:139474-139493 Msa1375840:intron 50.0%
GATGATGAAGAAGCAGGTGC+CGG - tig0019745:139480-139499 Msa1375840:intron 50.0%
TGAGAACGACGACGATGATG+AGG - tig0019745:139539-139558 Msa1375840:intron 50.0%
CCTCTTCAGCGTTGCCTAAA+GGG + tig0019745:140452-140471 None:intergenic 50.0%
TCCTCTTCAGCGTTGCCTAA+AGG + tig0019745:140453-140472 None:intergenic 50.0%
TTTAGGCAACGCTGAAGAGG+AGG - tig0019745:140452-140471 Msa1375840:CDS 50.0%
!! CTTCCTTTTTGGTGGAGCCT+CGG + tig0019745:140553-140572 None:intergenic 50.0%
AGGCTCCACCAAAAAGGAAG+AGG - tig0019745:140553-140572 Msa1375840:exon 50.0%
TGACGTGGCGTTTAATCGGA+CGG + tig0019745:139082-139101 None:intergenic 50.0%
CGTTGAGACACGAATTCACG+CGG + tig0019745:139110-139129 None:intergenic 50.0%
CGCGTGAATTCGTGTCTCAA+CGG - tig0019745:139108-139127 Msa1375840:three_prime_UTR 50.0%
TGACGAAGGAGATGATTCCG+CGG - tig0019745:139329-139348 Msa1375840:CDS 50.0%
GACGACGATGATGAAGAAGC+AGG - tig0019745:139474-139493 Msa1375840:intron 50.0%
GATGATGAAGAAGCAGGTGC+CGG - tig0019745:139480-139499 Msa1375840:intron 50.0%
TGAGAACGACGACGATGATG+AGG - tig0019745:139539-139558 Msa1375840:intron 50.0%
CCTCTTCAGCGTTGCCTAAA+GGG + tig0019745:140452-140471 None:intergenic 50.0%
TCCTCTTCAGCGTTGCCTAA+AGG + tig0019745:140453-140472 None:intergenic 50.0%
TTTAGGCAACGCTGAAGAGG+AGG - tig0019745:140452-140471 Msa1375840:CDS 50.0%
!! CTTCCTTTTTGGTGGAGCCT+CGG + tig0019745:140553-140572 None:intergenic 50.0%
AGGCTCCACCAAAAAGGAAG+AGG - tig0019745:140553-140572 Msa1375840:exon 50.0%
TGTTGACAGAAGACGTGGGC+CGG - tig0019745:138948-138967 Msa1375840:three_prime_UTR 55.0%
ATTCACGCGGATCGATGACG+TGG + tig0019745:139097-139116 None:intergenic 55.0%
GTAGACGACGGCGATGATGA+CGG - tig0019745:139357-139376 Msa1375840:CDS 55.0%
! GGAGACGAGGATGATGACGA+CGG - tig0019745:139378-139397 Msa1375840:CDS 55.0%
! GGATGATGACGACGGTGATG+AGG - tig0019745:139386-139405 Msa1375840:CDS 55.0%
TGAAGAGGATGACGACGACG+AGG - tig0019745:139416-139435 Msa1375840:intron 55.0%
AGACGACGACGATGAGGATG+AGG - tig0019745:139452-139471 Msa1375840:intron 55.0%
TCATCATCGTCGTCGTCGTC+AGG + tig0019745:139522-139541 None:intergenic 55.0%
GACTACCTTGTGCGCCCTTT+AGG - tig0019745:140435-140454 Msa1375840:CDS 55.0%
CCCTTTAGGCAACGCTGAAG+AGG - tig0019745:140449-140468 Msa1375840:CDS 55.0%
AGATGATGAGAAGGCTGCCG+AGG - tig0019745:140533-140552 Msa1375840:CDS 55.0%
TGTTGACAGAAGACGTGGGC+CGG - tig0019745:138948-138967 Msa1375840:three_prime_UTR 55.0%
ATTCACGCGGATCGATGACG+TGG + tig0019745:139097-139116 None:intergenic 55.0%
GTAGACGACGGCGATGATGA+CGG - tig0019745:139357-139376 Msa1375840:CDS 55.0%
! GGAGACGAGGATGATGACGA+CGG - tig0019745:139378-139397 Msa1375840:CDS 55.0%
! GGATGATGACGACGGTGATG+AGG - tig0019745:139386-139405 Msa1375840:CDS 55.0%
TGAAGAGGATGACGACGACG+AGG - tig0019745:139416-139435 Msa1375840:intron 55.0%
AGACGACGACGATGAGGATG+AGG - tig0019745:139452-139471 Msa1375840:intron 55.0%
TCATCATCGTCGTCGTCGTC+AGG + tig0019745:139522-139541 None:intergenic 55.0%
GACTACCTTGTGCGCCCTTT+AGG - tig0019745:140435-140454 Msa1375840:CDS 55.0%
CCCTTTAGGCAACGCTGAAG+AGG - tig0019745:140449-140468 Msa1375840:CDS 55.0%
AGATGATGAGAAGGCTGCCG+AGG - tig0019745:140533-140552 Msa1375840:CDS 55.0%
CGAAGGAGATGATTCCGCGG+AGG - tig0019745:139332-139351 Msa1375840:CDS 60.0%
TCCGCGGAGGAAGTAGACGA+CGG - tig0019745:139345-139364 Msa1375840:CDS 60.0%
AGGCTCACCACCTTGCTCAC+CGG + tig0019745:139502-139521 None:intergenic 60.0%
! CGTTGCCTAAAGGGCGCACA+AGG + tig0019745:140443-140462 None:intergenic 60.0%
CTGCCGAGGCTCCACCAAAA+AGG - tig0019745:140547-140566 Msa1375840:CDS 60.0%
CGAAGGAGATGATTCCGCGG+AGG - tig0019745:139332-139351 Msa1375840:CDS 60.0%
TCCGCGGAGGAAGTAGACGA+CGG - tig0019745:139345-139364 Msa1375840:CDS 60.0%
AGGCTCACCACCTTGCTCAC+CGG + tig0019745:139502-139521 None:intergenic 60.0%
! CGTTGCCTAAAGGGCGCACA+AGG + tig0019745:140443-140462 None:intergenic 60.0%
CTGCCGAGGCTCCACCAAAA+AGG - tig0019745:140547-140566 Msa1375840:CDS 60.0%
GCCGTCGTCTACTTCCTCCG+CGG + tig0019745:139349-139368 None:intergenic 65.0%
!! CGGCGATGATGACGGAGACG+AGG - tig0019745:139365-139384 Msa1375840:CDS 65.0%
GACGACGACGAGGATGCTCC+TGG - tig0019745:139426-139445 Msa1375840:intron 65.0%
GACGACGAGGATGCTCCTGG+CGG - tig0019745:139429-139448 Msa1375840:intron 65.0%
TCATCGTCGTCGTCTCCGCC+AGG + tig0019745:139447-139466 None:intergenic 65.0%
TGGCGGAGACGACGACGATG+AGG - tig0019745:139446-139465 Msa1375840:intron 65.0%
!! GAAGCAGGTGCCGGTGAGCA+AGG - tig0019745:139489-139508 Msa1375840:intron 65.0%
GCCGTCGTCTACTTCCTCCG+CGG + tig0019745:139349-139368 None:intergenic 65.0%
!! CGGCGATGATGACGGAGACG+AGG - tig0019745:139365-139384 Msa1375840:CDS 65.0%
GACGACGACGAGGATGCTCC+TGG - tig0019745:139426-139445 Msa1375840:intron 65.0%
GACGACGAGGATGCTCCTGG+CGG - tig0019745:139429-139448 Msa1375840:intron 65.0%
TCATCGTCGTCGTCTCCGCC+AGG + tig0019745:139447-139466 None:intergenic 65.0%
TGGCGGAGACGACGACGATG+AGG - tig0019745:139446-139465 Msa1375840:intron 65.0%
!! GAAGCAGGTGCCGGTGAGCA+AGG - tig0019745:139489-139508 Msa1375840:intron 65.0%
!! GCAGGTGCCGGTGAGCAAGG+TGG - tig0019745:139492-139511 Msa1375840:intron 70.0%
!! GCAGGTGCCGGTGAGCAAGG+TGG - tig0019745:139492-139511 Msa1375840:intron 70.0%
Chromosome Type Strat End Strand Name
tig0019745 gene 138836 140991 138836 ID=Msa1375840;Name=Msa1375840
tig0019745 mRNA 138836 140991 138836 ID=Msa1375840-mRNA-1;Parent=Msa1375840;Name=Msa1375840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=425|1|1|1|1|1|2|350|178
tig0019745 exon 138836 139407 138836 ID=Msa1375840-mRNA-1:exon:4731;Parent=Msa1375840-mRNA-1
tig0019745 exon 140252 140991 140252 ID=Msa1375840-mRNA-1:exon:4730;Parent=Msa1375840-mRNA-1
tig0019745 five_prime_UTR 140567 140991 140567 ID=Msa1375840-mRNA-1:five_prime_utr;Parent=Msa1375840-mRNA-1
tig0019745 CDS 140252 140566 140252 ID=Msa1375840-mRNA-1:cds;Parent=Msa1375840-mRNA-1
tig0019745 CDS 139186 139407 139186 ID=Msa1375840-mRNA-1:cds;Parent=Msa1375840-mRNA-1
tig0019745 three_prime_UTR 138836 139185 138836 ID=Msa1375840-mRNA-1:three_prime_utr;Parent=Msa1375840-mRNA-1
Gene Sequence

>Msa1375840

ATGAAGGTTACGGAAGATTCGAAGGATAAAGTTGAGGAGAAAGAGGTTATCGTTTTGAGTGATGAAGATGACGAAGGAGATGATTCCGCGGAGGAAGTAGACGACGGCGATGATGACGGAGACGAGGATGATGACGACGGTGATGAGGACGATGATGAAGAGGATGACGACGACGAGGATGCTCCTGGCGGAGACGACGACGATGAGGATGAGGACGACGATGATGAAGAAGCAGGTGCCGGTGAGCAAGGTGGTGAGCCTGACGACGACGACGATGATGAGAACGACGACGATGATGAGGAGAACGATGAAGAGGAGGATTTGGGAACAGACTACCTTGTGCGCCCTTTAGGCAACGCTGAAGAGGAGGAAGCATCTAGTGATTTTGAACCGGAAGAAAATGGTGAGGAAGATGAAGGTGCTGATGAAGATGATGAGAAGGCTGCCGAGGCTCCACCAAAAAGGAAGAGGTCAGATAAAGATGATGATTCAGATGATGACGATGGAGGAGATGATGAGAGACCCTCAAAAAAATAG

Protein sequence

>Msa1375840

MKVTEDSKDKVEEKEVIVLSDEDDEGDDSAEEVDDGDDDGDEDDDDGDEDDDEEDDDDEDAPGGDDDDEDEDDDDEEAGAGEQGGEPDDDDDDENDDDDEENDEEEDLGTDYLVRPLGNAEEEEASSDFEPEENGEEDEGADEDDEKAAEAPPKRKRSDKDDDSDDDDGGDDERPSKK*