AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1219010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219010 MtrunA17_Chr4g0068801 93.548 186 2 6 1 178 1 184 1.33e-88 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATCTACCAACAATTTC+AGG 0.178994 8_1:-81743282 None:intergenic
TAAAATATTGTAGGAGGATT+TGG 0.187310 8_1:+81742763 Msa1219010:intron
TATTATCATGCAACATTGTT+AGG 0.247228 8_1:+81743128 Msa1219010:three_prime_UTR
CCTCTTCAGCGTTGCCTAAA+GGG 0.272875 8_1:-81742805 None:intergenic
AATTGTTGGTAGATTTCTTC+TGG 0.288027 8_1:+81743287 Msa1219010:three_prime_UTR
AAAATATTGTAGGAGGATTT+GGG 0.329652 8_1:+81742764 Msa1219010:intron
AATAATTGAAATTCTATGTT+CGG 0.352406 8_1:-81741583 None:intergenic
CTGCCGAGGCTCCACCAAAA+AGG 0.375020 8_1:+81742903 Msa1219010:CDS
TCCTCTTCAGCGTTGCCTAA+AGG 0.387128 8_1:-81742806 None:intergenic
GACTACCTTGTGCGCCCTTT+AGG 0.392973 8_1:+81742791 Msa1219010:CDS
TCATCATCGTCGTCGTCGTC+AGG 0.396532 8_1:-81741877 None:intergenic
TAGGATTTCTAGTTTCTGTC+TGG 0.412200 8_1:+81743147 Msa1219010:three_prime_UTR
ATTTGTGAATTTCAAGATGA+AGG 0.412616 8_1:+81741603 Msa1219010:exon
GGGCTTTGTTCATTTATATC+CGG 0.425547 8_1:-81741325 None:intergenic
ATAATTGAAATTCTATGTTC+GGG 0.429235 8_1:-81741582 None:intergenic
TTCTGACACCCTGAAATTGT+TGG 0.438895 8_1:+81743273 Msa1219010:three_prime_UTR
TCTGTAGGGCTTGACTCAAT+TGG 0.440056 8_1:-81741192 None:intergenic
ATTTCTAGTTTCTGTCTGGT+TGG 0.442891 8_1:+81743151 Msa1219010:three_prime_UTR
TCGATGACGTGGCGTTTAAT+CGG 0.445551 8_1:-81741441 None:intergenic
GTTGGTGCATAGTTGATTGT+TGG 0.446195 8_1:+81743169 Msa1219010:three_prime_UTR
TTTAACTGTCACTCGAGTTA+GGG 0.459891 8_1:-81741357 None:intergenic
GGATAAAGTTGAGGAGAAAG+AGG 0.478281 8_1:+81741642 Msa1219010:CDS
GACGACGACGAGGATGCTCC+TGG 0.492791 8_1:+81741784 Msa1219010:CDS
GAAGCAGGTGCCGGTGAGCA+AGG 0.504426 8_1:+81741847 Msa1219010:CDS
GAATTTCAAGATGAAGGTTA+CGG 0.508118 8_1:+81741609 Msa1219010:exon
TCGATCGAAAATTGAGCACT+AGG 0.513317 8_1:-81741554 None:intergenic
AGATAAGATGATTAGGTCCA+TGG 0.519017 8_1:+81743082 Msa1219010:three_prime_UTR
TGTTGACAGAAGACGTGGGC+CGG 0.524711 8_1:+81741306 Msa1219010:five_prime_UTR
TCATCGTCGTCGTCTCCGCC+AGG 0.527550 8_1:-81741802 None:intergenic
CGTTGCCTAAAGGGCGCACA+AGG 0.528921 8_1:-81742796 None:intergenic
ATATCGTACTAGAGTCTGTA+GGG 0.529554 8_1:-81741206 None:intergenic
ATATTGATCTAATTGACCTA+TGG 0.530077 8_1:-81743037 None:intergenic
GAAATCTACCAACAATTTCA+GGG 0.532802 8_1:-81743281 None:intergenic
CCCTTTAGGCAACGCTGAAG+AGG 0.547020 8_1:+81742805 Msa1219010:CDS
AATATCGTACTAGAGTCTGT+AGG 0.555789 8_1:-81741207 None:intergenic
CGCGTGAATTCGTGTCTCAA+CGG 0.564203 8_1:+81741466 Msa1219010:five_prime_UTR
TTGGGTCTATTATATGCTTG+AGG 0.568201 8_1:+81743000 Msa1219010:three_prime_UTR
ACAGTTAAAACAAAAGTCGC+GGG 0.573290 8_1:+81741371 Msa1219010:five_prime_UTR
TTGTTGGTTAAACTTCTGCT+AGG 0.575182 8_1:+81743185 Msa1219010:three_prime_UTR
GAAGGTTACGGAAGATTCGA+AGG 0.578457 8_1:+81741621 Msa1219010:CDS
AGACGACGACGATGAGGATG+AGG 0.579234 8_1:+81741810 Msa1219010:CDS
GACGACGATGATGAAGAAGC+AGG 0.586669 8_1:+81741832 Msa1219010:CDS
GATGATGAAGAAGCAGGTGC+CGG 0.587393 8_1:+81741838 Msa1219010:CDS
TGAGAACGACGACGATGATG+AGG 0.590523 8_1:+81741897 Msa1219010:CDS
GAAAATGGTGAGGAAGATGA+AGG 0.597459 8_1:+81742857 Msa1219010:CDS
GACAGTTAAAACAAAAGTCG+CGG 0.605340 8_1:+81741370 Msa1219010:five_prime_UTR
TGCTGATGAAGATGATGAGA+AGG 0.606327 8_1:+81742880 Msa1219010:CDS
GGATGATGACGACGGTGATG+AGG 0.611884 8_1:+81741744 Msa1219010:CDS
AGGCTCACCACCTTGCTCAC+CGG 0.612942 8_1:-81741857 None:intergenic
AGAGTAACTGTAGAAACGAA+GGG 0.613522 8_1:+81741505 Msa1219010:five_prime_UTR
GAGAGTAACTGTAGAAACGA+AGG 0.614467 8_1:+81741504 Msa1219010:five_prime_UTR
GTAGACGACGGCGATGATGA+CGG 0.617388 8_1:+81741715 Msa1219010:CDS
TTTAGGCAACGCTGAAGAGG+AGG 0.618802 8_1:+81742808 Msa1219010:CDS
AGATGATGAGAAGGCTGCCG+AGG 0.621447 8_1:+81742889 Msa1219010:CDS
GAGAGAACGAAACAACTCCA+TGG 0.624719 8_1:-81743099 None:intergenic
GGACTTAACAAGTCAACCAT+AGG 0.625038 8_1:+81743021 Msa1219010:three_prime_UTR
TGACGTGGCGTTTAATCGGA+CGG 0.632327 8_1:-81741437 None:intergenic
CGGCGATGATGACGGAGACG+AGG 0.637223 8_1:+81741723 Msa1219010:CDS
TGATGAGGAGAACGATGAAG+AGG 0.641685 8_1:+81741912 Msa1219010:CDS
AGATTCGAAGGATAAAGTTG+AGG 0.642562 8_1:+81741633 Msa1219010:CDS
TGAAGAGGATGACGACGACG+AGG 0.647915 8_1:+81741774 Msa1219010:CDS
ATTCACGCGGATCGATGACG+TGG 0.649055 8_1:-81741452 None:intergenic
TGGCGGAGACGACGACGATG+AGG 0.656270 8_1:+81741804 Msa1219010:CDS
TGATGAGGACGATGATGAAG+AGG 0.657688 8_1:+81741759 Msa1219010:CDS
TGAACCGGAAGAAAATGGTG+AGG 0.662859 8_1:+81742847 Msa1219010:CDS
TTGAGTGATGAAGATGACGA+AGG 0.667428 8_1:+81741673 Msa1219010:CDS
GCAGGTGCCGGTGAGCAAGG+TGG 0.668286 8_1:+81741850 Msa1219010:CDS
TGACGAAGGAGATGATTCCG+CGG 0.677137 8_1:+81741687 Msa1219010:CDS
GATGATTCAGATGATGACGA+TGG 0.684292 8_1:+81742944 Msa1219010:CDS
GATTCAGATGATGACGATGG+AGG 0.693060 8_1:+81742947 Msa1219010:CDS
TCCGCGGAGGAAGTAGACGA+CGG 0.695976 8_1:+81741703 Msa1219010:CDS
GATAATGTGATTACGCACTG+CGG 0.701490 8_1:-81741396 None:intergenic
CGAAGGAGATGATTCCGCGG+AGG 0.706879 8_1:+81741690 Msa1219010:CDS
GACGACGAGGATGCTCCTGG+CGG 0.708780 8_1:+81741787 Msa1219010:CDS
CGTTGAGACACGAATTCACG+CGG 0.708980 8_1:-81741465 None:intergenic
GCCGTCGTCTACTTCCTCCG+CGG 0.720282 8_1:-81741704 None:intergenic
GGAGACGAGGATGATGACGA+CGG 0.760759 8_1:+81741736 Msa1219010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTGTTTTTTAAATAA+AGG + chr8_1:81741259-81741278 Msa1219010:five_prime_UTR 10.0%
!!! TCAATTTGTTTTTTAAATAA+AGG + chr8_1:81741259-81741278 Msa1219010:five_prime_UTR 10.0%
!! AATAATTGAAATTCTATGTT+CGG - chr8_1:81741586-81741605 None:intergenic 15.0%
!! TAAAACAAGTATATATAAGT+CGG - chr8_1:81741941-81741960 None:intergenic 15.0%
!! TTAACAATTTCAACAAATTA+GGG - chr8_1:81741970-81741989 None:intergenic 15.0%
!! ATTAACAATTTCAACAAATT+AGG - chr8_1:81741971-81741990 None:intergenic 15.0%
!!! TAATTTTTCAATTTTGAGTT+AGG + chr8_1:81742052-81742071 Msa1219010:intron 15.0%
!!! AATTTTTCAATTTTGAGTTA+GGG + chr8_1:81742053-81742072 Msa1219010:intron 15.0%
!!! TTTTTATCTTAGTAATTTGT+AGG + chr8_1:81743227-81743246 Msa1219010:three_prime_UTR 15.0%
!! AATAATTGAAATTCTATGTT+CGG - chr8_1:81741586-81741605 None:intergenic 15.0%
!! TAAAACAAGTATATATAAGT+CGG - chr8_1:81741941-81741960 None:intergenic 15.0%
!! TTAACAATTTCAACAAATTA+GGG - chr8_1:81741970-81741989 None:intergenic 15.0%
!! ATTAACAATTTCAACAAATT+AGG - chr8_1:81741971-81741990 None:intergenic 15.0%
!!! TAATTTTTCAATTTTGAGTT+AGG + chr8_1:81742052-81742071 Msa1219010:intron 15.0%
!!! AATTTTTCAATTTTGAGTTA+GGG + chr8_1:81742053-81742072 Msa1219010:intron 15.0%
!!! TTTTTATCTTAGTAATTTGT+AGG + chr8_1:81743227-81743246 Msa1219010:three_prime_UTR 15.0%
!! ATAATTGAAATTCTATGTTC+GGG - chr8_1:81741585-81741604 None:intergenic 20.0%
!! GTACTTATAAAAAATGATAG+AGG + chr8_1:81742391-81742410 Msa1219010:intron 20.0%
!! TAAGTGAAATTGAATTATAG+AGG - chr8_1:81742737-81742756 None:intergenic 20.0%
!! ATAATTCAATTTCACTTATG+AGG + chr8_1:81742739-81742758 Msa1219010:intron 20.0%
!! TTATGAGGATAAAATATTGT+AGG + chr8_1:81742754-81742773 Msa1219010:intron 20.0%
!! ATAATTGAAATTCTATGTTC+GGG - chr8_1:81741585-81741604 None:intergenic 20.0%
!! GTACTTATAAAAAATGATAG+AGG + chr8_1:81742391-81742410 Msa1219010:intron 20.0%
!! TAAGTGAAATTGAATTATAG+AGG - chr8_1:81742737-81742756 None:intergenic 20.0%
!! ATAATTCAATTTCACTTATG+AGG + chr8_1:81742739-81742758 Msa1219010:intron 20.0%
!! TTATGAGGATAAAATATTGT+AGG + chr8_1:81742754-81742773 Msa1219010:intron 20.0%
! ATTTGTGAATTTCAAGATGA+AGG + chr8_1:81741603-81741622 Msa1219010:exon 25.0%
! TGTTCGTTAATTTCATTCAT+AGG + chr8_1:81742004-81742023 Msa1219010:intron 25.0%
! TTAGAATTATGCAGTATGTT+TGG + chr8_1:81742366-81742385 Msa1219010:intron 25.0%
! TAAAATATTGTAGGAGGATT+TGG + chr8_1:81742763-81742782 Msa1219010:intron 25.0%
! AAAATATTGTAGGAGGATTT+GGG + chr8_1:81742764-81742783 Msa1219010:intron 25.0%
! ATATTGATCTAATTGACCTA+TGG - chr8_1:81743040-81743059 None:intergenic 25.0%
!! TTTTCAGAGATAAGATGATT+AGG + chr8_1:81743075-81743094 Msa1219010:three_prime_UTR 25.0%
! TATTATCATGCAACATTGTT+AGG + chr8_1:81743128-81743147 Msa1219010:three_prime_UTR 25.0%
! ATTTGTGAATTTCAAGATGA+AGG + chr8_1:81741603-81741622 Msa1219010:exon 25.0%
! TGTTCGTTAATTTCATTCAT+AGG + chr8_1:81742004-81742023 Msa1219010:intron 25.0%
! TTAGAATTATGCAGTATGTT+TGG + chr8_1:81742366-81742385 Msa1219010:intron 25.0%
! TAAAATATTGTAGGAGGATT+TGG + chr8_1:81742763-81742782 Msa1219010:intron 25.0%
! AAAATATTGTAGGAGGATTT+GGG + chr8_1:81742764-81742783 Msa1219010:intron 25.0%
! ATATTGATCTAATTGACCTA+TGG - chr8_1:81743040-81743059 None:intergenic 25.0%
!! TTTTCAGAGATAAGATGATT+AGG + chr8_1:81743075-81743094 Msa1219010:three_prime_UTR 25.0%
! TATTATCATGCAACATTGTT+AGG + chr8_1:81743128-81743147 Msa1219010:three_prime_UTR 25.0%
GAATTTCAAGATGAAGGTTA+CGG + chr8_1:81741609-81741628 Msa1219010:exon 30.0%
TGCTGCAATTAGTAGTTAAA+AGG - chr8_1:81742443-81742462 None:intergenic 30.0%
ACATGTTATTGAGTTCATAG+AGG - chr8_1:81742562-81742581 None:intergenic 30.0%
GCAGCAAAATTGAATTATAC+AGG - chr8_1:81742637-81742656 None:intergenic 30.0%
TGAGGATAAAATATTGTAGG+AGG + chr8_1:81742757-81742776 Msa1219010:intron 30.0%
ACCCTCAAAAAAATAGACTT+GGG + chr8_1:81742982-81743001 Msa1219010:exon 30.0%
!!! ACCCAAGTCTATTTTTTTGA+GGG - chr8_1:81742986-81743005 None:intergenic 30.0%
GAAATCTACCAACAATTTCA+GGG - chr8_1:81743284-81743303 None:intergenic 30.0%
AGAAATCTACCAACAATTTC+AGG - chr8_1:81743285-81743304 None:intergenic 30.0%
! AATTGTTGGTAGATTTCTTC+TGG + chr8_1:81743287-81743306 Msa1219010:three_prime_UTR 30.0%
GAATTTCAAGATGAAGGTTA+CGG + chr8_1:81741609-81741628 Msa1219010:exon 30.0%
TGCTGCAATTAGTAGTTAAA+AGG - chr8_1:81742443-81742462 None:intergenic 30.0%
ACATGTTATTGAGTTCATAG+AGG - chr8_1:81742562-81742581 None:intergenic 30.0%
GCAGCAAAATTGAATTATAC+AGG - chr8_1:81742637-81742656 None:intergenic 30.0%
TGAGGATAAAATATTGTAGG+AGG + chr8_1:81742757-81742776 Msa1219010:intron 30.0%
ACCCTCAAAAAAATAGACTT+GGG + chr8_1:81742982-81743001 Msa1219010:exon 30.0%
!!! ACCCAAGTCTATTTTTTTGA+GGG - chr8_1:81742986-81743005 None:intergenic 30.0%
GAAATCTACCAACAATTTCA+GGG - chr8_1:81743284-81743303 None:intergenic 30.0%
AGAAATCTACCAACAATTTC+AGG - chr8_1:81743285-81743304 None:intergenic 30.0%
! AATTGTTGGTAGATTTCTTC+TGG + chr8_1:81743287-81743306 Msa1219010:three_prime_UTR 30.0%
ATATCGTACTAGAGTCTGTA+GGG - chr8_1:81741209-81741228 None:intergenic 35.0%
AATATCGTACTAGAGTCTGT+AGG - chr8_1:81741210-81741229 None:intergenic 35.0%
! AATTTTGTTGACAGAAGACG+TGG + chr8_1:81741301-81741320 Msa1219010:five_prime_UTR 35.0%
! ATTTTGTTGACAGAAGACGT+GGG + chr8_1:81741302-81741321 Msa1219010:five_prime_UTR 35.0%
!! GGGCTTTGTTCATTTATATC+CGG - chr8_1:81741328-81741347 None:intergenic 35.0%
!!! TCGAGTTAGGGTTTTTTTCT+GGG - chr8_1:81741348-81741367 None:intergenic 35.0%
TTTAACTGTCACTCGAGTTA+GGG - chr8_1:81741360-81741379 None:intergenic 35.0%
!! TTTTAACTGTCACTCGAGTT+AGG - chr8_1:81741361-81741380 None:intergenic 35.0%
GACAGTTAAAACAAAAGTCG+CGG + chr8_1:81741370-81741389 Msa1219010:five_prime_UTR 35.0%
ACAGTTAAAACAAAAGTCGC+GGG + chr8_1:81741371-81741390 Msa1219010:five_prime_UTR 35.0%
AGAGTAACTGTAGAAACGAA+GGG + chr8_1:81741505-81741524 Msa1219010:five_prime_UTR 35.0%
AGATTCGAAGGATAAAGTTG+AGG + chr8_1:81741633-81741652 Msa1219010:CDS 35.0%
!!! TCAATTTTGAGTTAGGGTGA+AGG + chr8_1:81742059-81742078 Msa1219010:intron 35.0%
ACTACTAATTGCAGCATACT+TGG + chr8_1:81742447-81742466 Msa1219010:intron 35.0%
ATTATAGAGGTAGCAGAGAT+TGG - chr8_1:81742724-81742743 None:intergenic 35.0%
! AGCATCTAGTGATTTTGAAC+CGG + chr8_1:81742832-81742851 Msa1219010:CDS 35.0%
! GATTTTGAACCGGAAGAAAA+TGG + chr8_1:81742842-81742861 Msa1219010:CDS 35.0%
! TTATCTGACCTCTTCCTTTT+TGG - chr8_1:81742920-81742939 None:intergenic 35.0%
GACCCTCAAAAAAATAGACT+TGG + chr8_1:81742981-81743000 Msa1219010:exon 35.0%
!!! GACCCAAGTCTATTTTTTTG+AGG - chr8_1:81742987-81743006 None:intergenic 35.0%
TTGGGTCTATTATATGCTTG+AGG + chr8_1:81743000-81743019 Msa1219010:three_prime_UTR 35.0%
AGATAAGATGATTAGGTCCA+TGG + chr8_1:81743082-81743101 Msa1219010:three_prime_UTR 35.0%
!! TAGGATTTCTAGTTTCTGTC+TGG + chr8_1:81743147-81743166 Msa1219010:three_prime_UTR 35.0%
!! ATTTCTAGTTTCTGTCTGGT+TGG + chr8_1:81743151-81743170 Msa1219010:three_prime_UTR 35.0%
! TTGTTGGTTAAACTTCTGCT+AGG + chr8_1:81743185-81743204 Msa1219010:three_prime_UTR 35.0%
ATATCGTACTAGAGTCTGTA+GGG - chr8_1:81741209-81741228 None:intergenic 35.0%
AATATCGTACTAGAGTCTGT+AGG - chr8_1:81741210-81741229 None:intergenic 35.0%
! AATTTTGTTGACAGAAGACG+TGG + chr8_1:81741301-81741320 Msa1219010:five_prime_UTR 35.0%
! ATTTTGTTGACAGAAGACGT+GGG + chr8_1:81741302-81741321 Msa1219010:five_prime_UTR 35.0%
!! GGGCTTTGTTCATTTATATC+CGG - chr8_1:81741328-81741347 None:intergenic 35.0%
!!! TCGAGTTAGGGTTTTTTTCT+GGG - chr8_1:81741348-81741367 None:intergenic 35.0%
TTTAACTGTCACTCGAGTTA+GGG - chr8_1:81741360-81741379 None:intergenic 35.0%
!! TTTTAACTGTCACTCGAGTT+AGG - chr8_1:81741361-81741380 None:intergenic 35.0%
GACAGTTAAAACAAAAGTCG+CGG + chr8_1:81741370-81741389 Msa1219010:five_prime_UTR 35.0%
ACAGTTAAAACAAAAGTCGC+GGG + chr8_1:81741371-81741390 Msa1219010:five_prime_UTR 35.0%
AGAGTAACTGTAGAAACGAA+GGG + chr8_1:81741505-81741524 Msa1219010:five_prime_UTR 35.0%
AGATTCGAAGGATAAAGTTG+AGG + chr8_1:81741633-81741652 Msa1219010:CDS 35.0%
!!! TCAATTTTGAGTTAGGGTGA+AGG + chr8_1:81742059-81742078 Msa1219010:intron 35.0%
ACTACTAATTGCAGCATACT+TGG + chr8_1:81742447-81742466 Msa1219010:intron 35.0%
ATTATAGAGGTAGCAGAGAT+TGG - chr8_1:81742724-81742743 None:intergenic 35.0%
! AGCATCTAGTGATTTTGAAC+CGG + chr8_1:81742832-81742851 Msa1219010:CDS 35.0%
! GATTTTGAACCGGAAGAAAA+TGG + chr8_1:81742842-81742861 Msa1219010:CDS 35.0%
! TTATCTGACCTCTTCCTTTT+TGG - chr8_1:81742920-81742939 None:intergenic 35.0%
GACCCTCAAAAAAATAGACT+TGG + chr8_1:81742981-81743000 Msa1219010:exon 35.0%
!!! GACCCAAGTCTATTTTTTTG+AGG - chr8_1:81742987-81743006 None:intergenic 35.0%
TTGGGTCTATTATATGCTTG+AGG + chr8_1:81743000-81743019 Msa1219010:three_prime_UTR 35.0%
AGATAAGATGATTAGGTCCA+TGG + chr8_1:81743082-81743101 Msa1219010:three_prime_UTR 35.0%
!! TAGGATTTCTAGTTTCTGTC+TGG + chr8_1:81743147-81743166 Msa1219010:three_prime_UTR 35.0%
!! ATTTCTAGTTTCTGTCTGGT+TGG + chr8_1:81743151-81743170 Msa1219010:three_prime_UTR 35.0%
! TTGTTGGTTAAACTTCTGCT+AGG + chr8_1:81743185-81743204 Msa1219010:three_prime_UTR 35.0%
!!! CTCGAGTTAGGGTTTTTTTC+TGG - chr8_1:81741349-81741368 None:intergenic 40.0%
GATAATGTGATTACGCACTG+CGG - chr8_1:81741399-81741418 None:intergenic 40.0%
GAGAGTAACTGTAGAAACGA+AGG + chr8_1:81741504-81741523 Msa1219010:five_prime_UTR 40.0%
TCGATCGAAAATTGAGCACT+AGG - chr8_1:81741557-81741576 None:intergenic 40.0%
GGATAAAGTTGAGGAGAAAG+AGG + chr8_1:81741642-81741661 Msa1219010:CDS 40.0%
TTGAGTGATGAAGATGACGA+AGG + chr8_1:81741673-81741692 Msa1219010:CDS 40.0%
! TCTTCCTCACCATTTTCTTC+CGG - chr8_1:81742854-81742873 None:intergenic 40.0%
GAAAATGGTGAGGAAGATGA+AGG + chr8_1:81742857-81742876 Msa1219010:CDS 40.0%
TGCTGATGAAGATGATGAGA+AGG + chr8_1:81742880-81742899 Msa1219010:CDS 40.0%
! GATGATTCAGATGATGACGA+TGG + chr8_1:81742944-81742963 Msa1219010:CDS 40.0%
GGACTTAACAAGTCAACCAT+AGG + chr8_1:81743021-81743040 Msa1219010:three_prime_UTR 40.0%
GTTGGTGCATAGTTGATTGT+TGG + chr8_1:81743169-81743188 Msa1219010:three_prime_UTR 40.0%
TTCTGACACCCTGAAATTGT+TGG + chr8_1:81743273-81743292 Msa1219010:three_prime_UTR 40.0%
!!! CTCGAGTTAGGGTTTTTTTC+TGG - chr8_1:81741349-81741368 None:intergenic 40.0%
GATAATGTGATTACGCACTG+CGG - chr8_1:81741399-81741418 None:intergenic 40.0%
GAGAGTAACTGTAGAAACGA+AGG + chr8_1:81741504-81741523 Msa1219010:five_prime_UTR 40.0%
TCGATCGAAAATTGAGCACT+AGG - chr8_1:81741557-81741576 None:intergenic 40.0%
GGATAAAGTTGAGGAGAAAG+AGG + chr8_1:81741642-81741661 Msa1219010:CDS 40.0%
TTGAGTGATGAAGATGACGA+AGG + chr8_1:81741673-81741692 Msa1219010:CDS 40.0%
! TCTTCCTCACCATTTTCTTC+CGG - chr8_1:81742854-81742873 None:intergenic 40.0%
GAAAATGGTGAGGAAGATGA+AGG + chr8_1:81742857-81742876 Msa1219010:CDS 40.0%
TGCTGATGAAGATGATGAGA+AGG + chr8_1:81742880-81742899 Msa1219010:CDS 40.0%
! GATGATTCAGATGATGACGA+TGG + chr8_1:81742944-81742963 Msa1219010:CDS 40.0%
GGACTTAACAAGTCAACCAT+AGG + chr8_1:81743021-81743040 Msa1219010:three_prime_UTR 40.0%
GTTGGTGCATAGTTGATTGT+TGG + chr8_1:81743169-81743188 Msa1219010:three_prime_UTR 40.0%
TTCTGACACCCTGAAATTGT+TGG + chr8_1:81743273-81743292 Msa1219010:three_prime_UTR 40.0%
TCGATGACGTGGCGTTTAAT+CGG - chr8_1:81741444-81741463 None:intergenic 45.0%
GAAGGTTACGGAAGATTCGA+AGG + chr8_1:81741621-81741640 Msa1219010:CDS 45.0%
TGATGAGGACGATGATGAAG+AGG + chr8_1:81741759-81741778 Msa1219010:CDS 45.0%
TGATGAGGAGAACGATGAAG+AGG + chr8_1:81741912-81741931 Msa1219010:CDS 45.0%
TGAACCGGAAGAAAATGGTG+AGG + chr8_1:81742847-81742866 Msa1219010:CDS 45.0%
! TCTGACCTCTTCCTTTTTGG+TGG - chr8_1:81742917-81742936 None:intergenic 45.0%
! GATTCAGATGATGACGATGG+AGG + chr8_1:81742947-81742966 Msa1219010:CDS 45.0%
GAGAGAACGAAACAACTCCA+TGG - chr8_1:81743102-81743121 None:intergenic 45.0%
TCGATGACGTGGCGTTTAAT+CGG - chr8_1:81741444-81741463 None:intergenic 45.0%
GAAGGTTACGGAAGATTCGA+AGG + chr8_1:81741621-81741640 Msa1219010:CDS 45.0%
TGATGAGGACGATGATGAAG+AGG + chr8_1:81741759-81741778 Msa1219010:CDS 45.0%
TGATGAGGAGAACGATGAAG+AGG + chr8_1:81741912-81741931 Msa1219010:CDS 45.0%
TGAACCGGAAGAAAATGGTG+AGG + chr8_1:81742847-81742866 Msa1219010:CDS 45.0%
! TCTGACCTCTTCCTTTTTGG+TGG - chr8_1:81742917-81742936 None:intergenic 45.0%
! GATTCAGATGATGACGATGG+AGG + chr8_1:81742947-81742966 Msa1219010:CDS 45.0%
GAGAGAACGAAACAACTCCA+TGG - chr8_1:81743102-81743121 None:intergenic 45.0%
!!! AAAATTAAAAATACTTTTAA+AGG - chr8_1:81742039-81742058 None:intergenic 5.0%
!!! AAAATTAAAAATACTTTTAA+AGG - chr8_1:81742039-81742058 None:intergenic 5.0%
TGACGTGGCGTTTAATCGGA+CGG - chr8_1:81741440-81741459 None:intergenic 50.0%
CGTTGAGACACGAATTCACG+CGG - chr8_1:81741468-81741487 None:intergenic 50.0%
CGCGTGAATTCGTGTCTCAA+CGG + chr8_1:81741466-81741485 Msa1219010:five_prime_UTR 50.0%
TGACGAAGGAGATGATTCCG+CGG + chr8_1:81741687-81741706 Msa1219010:CDS 50.0%
GACGACGATGATGAAGAAGC+AGG + chr8_1:81741832-81741851 Msa1219010:CDS 50.0%
GATGATGAAGAAGCAGGTGC+CGG + chr8_1:81741838-81741857 Msa1219010:CDS 50.0%
TGAGAACGACGACGATGATG+AGG + chr8_1:81741897-81741916 Msa1219010:CDS 50.0%
CCTCTTCAGCGTTGCCTAAA+GGG - chr8_1:81742808-81742827 None:intergenic 50.0%
TCCTCTTCAGCGTTGCCTAA+AGG - chr8_1:81742809-81742828 None:intergenic 50.0%
TTTAGGCAACGCTGAAGAGG+AGG + chr8_1:81742808-81742827 Msa1219010:CDS 50.0%
!! CTTCCTTTTTGGTGGAGCCT+CGG - chr8_1:81742909-81742928 None:intergenic 50.0%
AGGCTCCACCAAAAAGGAAG+AGG + chr8_1:81742909-81742928 Msa1219010:CDS 50.0%
TGACGTGGCGTTTAATCGGA+CGG - chr8_1:81741440-81741459 None:intergenic 50.0%
CGTTGAGACACGAATTCACG+CGG - chr8_1:81741468-81741487 None:intergenic 50.0%
CGCGTGAATTCGTGTCTCAA+CGG + chr8_1:81741466-81741485 Msa1219010:five_prime_UTR 50.0%
TGACGAAGGAGATGATTCCG+CGG + chr8_1:81741687-81741706 Msa1219010:CDS 50.0%
GACGACGATGATGAAGAAGC+AGG + chr8_1:81741832-81741851 Msa1219010:CDS 50.0%
GATGATGAAGAAGCAGGTGC+CGG + chr8_1:81741838-81741857 Msa1219010:CDS 50.0%
TGAGAACGACGACGATGATG+AGG + chr8_1:81741897-81741916 Msa1219010:CDS 50.0%
CCTCTTCAGCGTTGCCTAAA+GGG - chr8_1:81742808-81742827 None:intergenic 50.0%
TCCTCTTCAGCGTTGCCTAA+AGG - chr8_1:81742809-81742828 None:intergenic 50.0%
TTTAGGCAACGCTGAAGAGG+AGG + chr8_1:81742808-81742827 Msa1219010:CDS 50.0%
!! CTTCCTTTTTGGTGGAGCCT+CGG - chr8_1:81742909-81742928 None:intergenic 50.0%
AGGCTCCACCAAAAAGGAAG+AGG + chr8_1:81742909-81742928 Msa1219010:CDS 50.0%
TGTTGACAGAAGACGTGGGC+CGG + chr8_1:81741306-81741325 Msa1219010:five_prime_UTR 55.0%
ATTCACGCGGATCGATGACG+TGG - chr8_1:81741455-81741474 None:intergenic 55.0%
GTAGACGACGGCGATGATGA+CGG + chr8_1:81741715-81741734 Msa1219010:CDS 55.0%
! GGAGACGAGGATGATGACGA+CGG + chr8_1:81741736-81741755 Msa1219010:CDS 55.0%
! GGATGATGACGACGGTGATG+AGG + chr8_1:81741744-81741763 Msa1219010:CDS 55.0%
TGAAGAGGATGACGACGACG+AGG + chr8_1:81741774-81741793 Msa1219010:CDS 55.0%
AGACGACGACGATGAGGATG+AGG + chr8_1:81741810-81741829 Msa1219010:CDS 55.0%
TCATCATCGTCGTCGTCGTC+AGG - chr8_1:81741880-81741899 None:intergenic 55.0%
GACTACCTTGTGCGCCCTTT+AGG + chr8_1:81742791-81742810 Msa1219010:CDS 55.0%
CCCTTTAGGCAACGCTGAAG+AGG + chr8_1:81742805-81742824 Msa1219010:CDS 55.0%
AGATGATGAGAAGGCTGCCG+AGG + chr8_1:81742889-81742908 Msa1219010:CDS 55.0%
TGTTGACAGAAGACGTGGGC+CGG + chr8_1:81741306-81741325 Msa1219010:five_prime_UTR 55.0%
ATTCACGCGGATCGATGACG+TGG - chr8_1:81741455-81741474 None:intergenic 55.0%
GTAGACGACGGCGATGATGA+CGG + chr8_1:81741715-81741734 Msa1219010:CDS 55.0%
! GGAGACGAGGATGATGACGA+CGG + chr8_1:81741736-81741755 Msa1219010:CDS 55.0%
! GGATGATGACGACGGTGATG+AGG + chr8_1:81741744-81741763 Msa1219010:CDS 55.0%
TGAAGAGGATGACGACGACG+AGG + chr8_1:81741774-81741793 Msa1219010:CDS 55.0%
AGACGACGACGATGAGGATG+AGG + chr8_1:81741810-81741829 Msa1219010:CDS 55.0%
TCATCATCGTCGTCGTCGTC+AGG - chr8_1:81741880-81741899 None:intergenic 55.0%
GACTACCTTGTGCGCCCTTT+AGG + chr8_1:81742791-81742810 Msa1219010:CDS 55.0%
CCCTTTAGGCAACGCTGAAG+AGG + chr8_1:81742805-81742824 Msa1219010:CDS 55.0%
AGATGATGAGAAGGCTGCCG+AGG + chr8_1:81742889-81742908 Msa1219010:CDS 55.0%
CGAAGGAGATGATTCCGCGG+AGG + chr8_1:81741690-81741709 Msa1219010:CDS 60.0%
TCCGCGGAGGAAGTAGACGA+CGG + chr8_1:81741703-81741722 Msa1219010:CDS 60.0%
AGGCTCACCACCTTGCTCAC+CGG - chr8_1:81741860-81741879 None:intergenic 60.0%
! CGTTGCCTAAAGGGCGCACA+AGG - chr8_1:81742799-81742818 None:intergenic 60.0%
CTGCCGAGGCTCCACCAAAA+AGG + chr8_1:81742903-81742922 Msa1219010:CDS 60.0%
CGAAGGAGATGATTCCGCGG+AGG + chr8_1:81741690-81741709 Msa1219010:CDS 60.0%
TCCGCGGAGGAAGTAGACGA+CGG + chr8_1:81741703-81741722 Msa1219010:CDS 60.0%
AGGCTCACCACCTTGCTCAC+CGG - chr8_1:81741860-81741879 None:intergenic 60.0%
! CGTTGCCTAAAGGGCGCACA+AGG - chr8_1:81742799-81742818 None:intergenic 60.0%
CTGCCGAGGCTCCACCAAAA+AGG + chr8_1:81742903-81742922 Msa1219010:CDS 60.0%
GCCGTCGTCTACTTCCTCCG+CGG - chr8_1:81741707-81741726 None:intergenic 65.0%
!! CGGCGATGATGACGGAGACG+AGG + chr8_1:81741723-81741742 Msa1219010:CDS 65.0%
GACGACGACGAGGATGCTCC+TGG + chr8_1:81741784-81741803 Msa1219010:CDS 65.0%
GACGACGAGGATGCTCCTGG+CGG + chr8_1:81741787-81741806 Msa1219010:CDS 65.0%
TCATCGTCGTCGTCTCCGCC+AGG - chr8_1:81741805-81741824 None:intergenic 65.0%
TGGCGGAGACGACGACGATG+AGG + chr8_1:81741804-81741823 Msa1219010:CDS 65.0%
!! GAAGCAGGTGCCGGTGAGCA+AGG + chr8_1:81741847-81741866 Msa1219010:CDS 65.0%
GCCGTCGTCTACTTCCTCCG+CGG - chr8_1:81741707-81741726 None:intergenic 65.0%
!! CGGCGATGATGACGGAGACG+AGG + chr8_1:81741723-81741742 Msa1219010:CDS 65.0%
GACGACGACGAGGATGCTCC+TGG + chr8_1:81741784-81741803 Msa1219010:CDS 65.0%
GACGACGAGGATGCTCCTGG+CGG + chr8_1:81741787-81741806 Msa1219010:CDS 65.0%
TCATCGTCGTCGTCTCCGCC+AGG - chr8_1:81741805-81741824 None:intergenic 65.0%
TGGCGGAGACGACGACGATG+AGG + chr8_1:81741804-81741823 Msa1219010:CDS 65.0%
!! GAAGCAGGTGCCGGTGAGCA+AGG + chr8_1:81741847-81741866 Msa1219010:CDS 65.0%
!! GCAGGTGCCGGTGAGCAAGG+TGG + chr8_1:81741850-81741869 Msa1219010:CDS 70.0%
!! GCAGGTGCCGGTGAGCAAGG+TGG + chr8_1:81741850-81741869 Msa1219010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81741194 81743347 81741194 ID=Msa1219010;Name=Msa1219010
chr8_1 mRNA 81741194 81743347 81741194 ID=Msa1219010-mRNA-1;Parent=Msa1219010;Name=Msa1219010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=425|1|1|1|1|1|2|350|178
chr8_1 exon 81741194 81741933 81741194 ID=Msa1219010-mRNA-1:exon:28955;Parent=Msa1219010-mRNA-1
chr8_1 exon 81742776 81743347 81742776 ID=Msa1219010-mRNA-1:exon:28956;Parent=Msa1219010-mRNA-1
chr8_1 five_prime_UTR 81741194 81741618 81741194 ID=Msa1219010-mRNA-1:five_prime_utr;Parent=Msa1219010-mRNA-1
chr8_1 CDS 81741619 81741933 81741619 ID=Msa1219010-mRNA-1:cds;Parent=Msa1219010-mRNA-1
chr8_1 CDS 81742776 81742997 81742776 ID=Msa1219010-mRNA-1:cds;Parent=Msa1219010-mRNA-1
chr8_1 three_prime_UTR 81742998 81743347 81742998 ID=Msa1219010-mRNA-1:three_prime_utr;Parent=Msa1219010-mRNA-1
Gene Sequence

>Msa1219010

ATGAAGGTTACGGAAGATTCGAAGGATAAAGTTGAGGAGAAAGAGGTTATCGTTTTGAGTGATGAAGATGACGAAGGAGATGATTCCGCGGAGGAAGTAGACGACGGCGATGATGACGGAGACGAGGATGATGACGACGGTGATGAGGACGATGATGAAGAGGATGACGACGACGAGGATGCTCCTGGCGGAGACGACGACGATGAGGATGAGGACGACGATGATGAAGAAGCAGGTGCCGGTGAGCAAGGTGGTGAGCCTGACGACGACGACGATGATGAGAACGACGACGATGATGAGGAGAACGATGAAGAGGAGGATTTGGGAACAGACTACCTTGTGCGCCCTTTAGGCAACGCTGAAGAGGAGGAAGCATCTAGTGATTTTGAACCGGAAGAAAATGGTGAGGAAGATGAAGGTGCTGATGAAGATGATGAGAAGGCTGCCGAGGCTCCACCAAAAAGGAAGAGGTCAGATAAAGATGATGATTCAGATGATGACGATGGAGGAGATGATGAGAGACCCTCAAAAAAATAG

Protein sequence

>Msa1219010

MKVTEDSKDKVEEKEVIVLSDEDDEGDDSAEEVDDGDDDGDEDDDDGDEDDDEEDDDDEDAPGGDDDDEDEDDDDEEAGAGEQGGEPDDDDDDENDDDDEENDEEEDLGTDYLVRPLGNAEEEEASSDFEPEENGEEDEGADEDDEKAAEAPPKRKRSDKDDDSDDDDGGDDERPSKK*