Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001704.t1 | XP_003603332.1 | 91 | 478 | 43 | 0 | 1 | 478 | 3 | 480 | 8.50E-171 | 610.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001704.t1 | D2XNQ9 | 91.0 | 478 | 43 | 0 | 1 | 478 | 3 | 480 | 2.1e-173 | 610.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001704.t1 | G7JAE4 | 91.0 | 478 | 43 | 0 | 1 | 478 | 3 | 480 | 6.1e-171 | 610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001704.t1 | MTR_3g106485 | 96.653 | 478 | 12 | 2 | 1 | 478 | 1 | 474 | 0.0 | 932 |
| MS.gene001704.t1 | MTR_3g106480 | 94.351 | 478 | 27 | 0 | 1 | 478 | 1 | 478 | 0.0 | 922 |
| MS.gene001704.t1 | MTR_3g106420 | 93.724 | 478 | 30 | 0 | 1 | 478 | 3 | 480 | 0.0 | 892 |
| MS.gene001704.t1 | MTR_1g115145 | 89.770 | 479 | 42 | 3 | 1 | 478 | 1 | 473 | 0.0 | 852 |
| MS.gene001704.t1 | MTR_1g073400 | 91.213 | 478 | 38 | 1 | 1 | 478 | 1 | 474 | 0.0 | 848 |
| MS.gene001704.t1 | MTR_1g083190 | 90.167 | 478 | 39 | 1 | 1 | 478 | 3 | 472 | 0.0 | 844 |
| MS.gene001704.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 837 |
| MS.gene001704.t1 | MTR_3g106430 | 91.195 | 477 | 38 | 2 | 1 | 477 | 1 | 473 | 0.0 | 829 |
| MS.gene001704.t1 | MTR_3g106470 | 81.551 | 477 | 32 | 2 | 1 | 477 | 32 | 452 | 0.0 | 739 |
| MS.gene001704.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 672 |
| MS.gene001704.t1 | MTR_3g065540 | 63.478 | 115 | 15 | 1 | 40 | 154 | 14 | 101 | 9.75e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001704.t1 | AT5G25260 | 74.262 | 474 | 110 | 2 | 1 | 474 | 1 | 462 | 0.0 | 731 |
| MS.gene001704.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 1 | 473 | 1 | 459 | 0.0 | 717 |
| MS.gene001704.t1 | AT5G64870 | 69.915 | 472 | 131 | 1 | 2 | 473 | 3 | 463 | 0.0 | 651 |
Find 112 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 1.3:+64601751 | MS.gene001704:CDS |
| GGTCCAAGCCGCTTTCTTCT+TGG | 0.239260 | 1.3:-64602029 | None:intergenic |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.3:+64603142 | MS.gene001704:CDS |
| TCATGTTAATGAACTTGTTC+AGG | 0.267035 | 1.3:+64601556 | MS.gene001704:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.284832 | 1.3:+64601680 | MS.gene001704:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 1.3:+64603069 | MS.gene001704:CDS |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.3:+64602080 | MS.gene001704:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.3:+64601827 | MS.gene001704:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.319807 | 1.3:+64603281 | MS.gene001704:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.320975 | 1.3:+64602815 | MS.gene001704:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.325227 | 1.3:-64603147 | None:intergenic |
| AACAAGTTCATTAACATGAT+TGG | 0.340818 | 1.3:-64601552 | None:intergenic |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 1.3:+64601840 | MS.gene001704:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.374224 | 1.3:+64601302 | MS.gene001704:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:+64601715 | MS.gene001704:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 1.3:+64602042 | MS.gene001704:CDS |
| GGGAATAACTGAAGGTGCTA+TGG | 0.428010 | 1.3:+64603188 | MS.gene001704:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 1.3:-64602050 | None:intergenic |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 1.3:+64603162 | MS.gene001704:CDS |
| ATCATGGGGTGAAATAAGTT+TGG | 0.453058 | 1.3:-64601522 | None:intergenic |
| AACTTGAGTTGAATCAATTC+GGG | 0.454308 | 1.3:+64601681 | MS.gene001704:CDS |
| CTGGCATGTTGCCTCCTGCT+TGG | 0.459012 | 1.3:+64603277 | MS.gene001704:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 1.3:+64601982 | MS.gene001704:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.3:+64602867 | MS.gene001704:CDS |
| CTCCCTGCCGTCTTCACTAT+CGG | 0.465580 | 1.3:+64601461 | MS.gene001704:CDS |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 1.3:+64602066 | MS.gene001704:CDS |
| AAGACTGTCCATGAGCAAAC+TGG | 0.472099 | 1.3:+64603258 | MS.gene001704:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.3:+64602045 | MS.gene001704:CDS |
| GCAGAGGGGATTGCGACACT+TGG | 0.477405 | 1.3:+64602982 | MS.gene001704:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 1.3:+64601841 | MS.gene001704:CDS |
| CATGTTAATGAACTTGTTCA+GGG | 0.485350 | 1.3:+64601557 | MS.gene001704:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 1.3:+64601752 | MS.gene001704:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 1.3:+64601267 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.491718 | 1.3:+64603282 | MS.gene001704:CDS |
| CATGATTGGAGTGTCTATCA+TGG | 0.495785 | 1.3:-64601538 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.495947 | 1.3:+64601610 | MS.gene001704:CDS |
| AACTAAGAAGGTATAGTTCA+CGG | 0.503038 | 1.3:-64601405 | None:intergenic |
| TTCAAGTCCGCGTACCGCCT+CGG | 0.504382 | 1.3:-64603124 | None:intergenic |
| CTTGTTCAGGGAATCATTGA+AGG | 0.505259 | 1.3:+64601569 | MS.gene001704:CDS |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 1.3:-64601615 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 1.3:+64601789 | MS.gene001704:CDS |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 1.3:+64603049 | MS.gene001704:CDS |
| GGACCGATAGTGAAGACGGC+AGG | 0.514852 | 1.3:-64601464 | None:intergenic |
| AAGACGGCAGGGAGAACGAA+AGG | 0.516090 | 1.3:-64601452 | None:intergenic |
| GGAATAACTGAAGGTGCTAT+GGG | 0.526339 | 1.3:+64603189 | MS.gene001704:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.3:+64601728 | MS.gene001704:CDS |
| ACTCATAGCTTGAACTAAGA+AGG | 0.526930 | 1.3:-64601417 | None:intergenic |
| GCAACATGCCAGTTTGCTCA+TGG | 0.527154 | 1.3:-64603266 | None:intergenic |
| TGCTGAGGCTAATTCTGAGT+TGG | 0.528368 | 1.3:+64602006 | MS.gene001704:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.3:-64601508 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.536670 | 1.3:+64602097 | MS.gene001704:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 1.3:+64602057 | MS.gene001704:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.3:+64602081 | MS.gene001704:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 1.3:+64601911 | MS.gene001704:CDS |
| AGGTATAGTTCACGGGTGAA+AGG | 0.550393 | 1.3:-64601397 | None:intergenic |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 1.3:-64603291 | None:intergenic |
| CTCGATGTTGTAGGTACAAG+AGG | 0.554398 | 1.3:+64602807 | MS.gene001704:intron |
| CCTAGCTGCTTCCATGACCA+TGG | 0.557417 | 1.3:+64601604 | MS.gene001704:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.558168 | 1.3:+64602033 | MS.gene001704:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.3:+64602072 | MS.gene001704:CDS |
| CCATGGTCATGGAAGCAGCT+AGG | 0.558898 | 1.3:-64601604 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:+64601718 | MS.gene001704:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.569410 | 1.3:+64603207 | MS.gene001704:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.3:+64603027 | MS.gene001704:CDS |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 1.3:-64601621 | None:intergenic |
| CAGAGGGGATTGCGACACTT+GGG | 0.572412 | 1.3:+64602983 | MS.gene001704:CDS |
| TATCTTGCGATAACTGGTGT+AGG | 0.573302 | 1.3:+64601308 | MS.gene001704:CDS |
| ACTAAGAAGGTATAGTTCAC+GGG | 0.573332 | 1.3:-64601404 | None:intergenic |
| AAGATTAGTATTTGGACTAA+CGG | 0.575927 | 1.3:+64603150 | MS.gene001704:CDS |
| GAGAGAGGCTGAGGTTGCTG+AGG | 0.577125 | 1.3:+64601991 | MS.gene001704:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.577347 | 1.3:+64602816 | MS.gene001704:intron |
| GCGACACTTGGGAATGCTCA+AGG | 0.583461 | 1.3:+64602994 | MS.gene001704:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 1.3:+64601342 | MS.gene001704:CDS |
| TGGCCAAGAAGAAAGCGGCT+TGG | 0.586771 | 1.3:+64602026 | MS.gene001704:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.3:+64601906 | MS.gene001704:CDS |
| ATGATTGGAGTGTCTATCAT+GGG | 0.587404 | 1.3:-64601537 | None:intergenic |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 1.3:+64603168 | MS.gene001704:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 1.3:+64603050 | MS.gene001704:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.3:+64602873 | MS.gene001704:CDS |
| GACCGATAGTGAAGACGGCA+GGG | 0.602102 | 1.3:-64601463 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 1.3:+64603167 | MS.gene001704:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.3:+64601818 | MS.gene001704:CDS |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 1.3:+64601769 | MS.gene001704:CDS |
| AGAAGCAAGGAATTAAAGTG+AGG | 0.621669 | 1.3:+64601942 | MS.gene001704:CDS |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 1.3:+64603166 | MS.gene001704:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 1.3:+64601845 | MS.gene001704:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 1.3:-64601451 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.3:+64601907 | MS.gene001704:CDS |
| GGAAGCTGAGTTACAAGGCG+AGG | 0.636048 | 1.3:+64602102 | MS.gene001704:CDS |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 1.3:+64601790 | MS.gene001704:CDS |
| ACGAGGACCGATAGTGAAGA+CGG | 0.639502 | 1.3:-64601468 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 1.3:+64601268 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 1.3:+64603107 | MS.gene001704:CDS |
| TGAGTTGGCCAAGAAGAAAG+CGG | 0.645893 | 1.3:+64602021 | MS.gene001704:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 1.3:+64602186 | MS.gene001704:CDS |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.3:+64601889 | MS.gene001704:CDS |
| AAGAAAGCATGGATTTACCC+TGG | 0.654675 | 1.3:+64601353 | MS.gene001704:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.3:-64603246 | None:intergenic |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 1.3:-64601746 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.3:+64603072 | MS.gene001704:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.3:-64603249 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 1.3:+64603110 | MS.gene001704:CDS |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 1.3:-64603288 | None:intergenic |
| AGCTGCTTCCATGACCATGG+AGG | 0.676991 | 1.3:+64601607 | MS.gene001704:CDS |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 1.3:+64603117 | MS.gene001704:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 1.3:+64603153 | MS.gene001704:CDS |
| CTTTCATGATCGTCAACACG+AGG | 0.689350 | 1.3:-64601485 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+AGG | 0.689994 | 1.3:+64601929 | MS.gene001704:CDS |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 1.3:+64603165 | MS.gene001704:CDS |
| TTGCTTGCGAGCATAAAACG+TGG | 0.719700 | 1.3:-64602923 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 1.3:+64602036 | MS.gene001704:CDS |
| TGATTGGAGTGTCTATCATG+GGG | 0.776734 | 1.3:-64601536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTAAATCATTTGATAA+CGG | + | chr1.3:64602439-64602458 | MS.gene001704:intron | 15.0% |
| !! | AAAAGTAAAACATAACAAGT+AGG | + | chr1.3:64602729-64602748 | MS.gene001704:intron | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+CGG | - | chr1.3:64602698-64602717 | None:intergenic | 20.0% |
| !! | TGCATATTGATATAAAAAGA+TGG | + | chr1.3:64602330-64602349 | MS.gene001704:intron | 20.0% |
| !! | TTAAGAAAAAGATAGACATA+TGG | + | chr1.3:64602624-64602643 | MS.gene001704:intron | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr1.3:64601555-64601574 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | + | chr1.3:64603150-64603169 | MS.gene001704:CDS | 25.0% |
| ! | AGCAAATGATATATGTTCAA+CGG | - | chr1.3:64602395-64602414 | None:intergenic | 25.0% |
| ! | GCATATATATTGAAGAATGT+TGG | + | chr1.3:64602657-64602676 | MS.gene001704:intron | 25.0% |
| ! | TCTTAATCGAAACAAAACAT+AGG | - | chr1.3:64602610-64602629 | None:intergenic | 25.0% |
| ! | TGTCCTTAACAAAACTAATT+TGG | - | chr1.3:64602515-64602534 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.3:64603150-64603169 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.3:64603142-64603161 | MS.gene001704:CDS | 25.0% |
| !! | CTTAATTGAAGTATTACTCT+TGG | - | chr1.3:64602276-64602295 | None:intergenic | 25.0% |
| !!! | GTTCCAAATTAGTTTTGTTA+AGG | + | chr1.3:64602509-64602528 | MS.gene001704:intron | 25.0% |
| AACAAGAAGTTATAGTTGCA+TGG | - | chr1.3:64602217-64602236 | None:intergenic | 30.0% | |
| AAGTACACAAACTAATAGCA+AGG | - | chr1.3:64602560-64602579 | None:intergenic | 30.0% | |
| AGTACACAAACTAATAGCAA+GGG | - | chr1.3:64602559-64602578 | None:intergenic | 30.0% | |
| ATAACAAGTAGGTTGTATAC+TGG | + | chr1.3:64602740-64602759 | MS.gene001704:intron | 30.0% | |
| ATAGACATATGGTAGGTAAA+TGG | + | chr1.3:64602635-64602654 | MS.gene001704:intron | 30.0% | |
| ATCTGATCAAACTTTCATCA+TGG | + | chr1.3:64602360-64602379 | MS.gene001704:intron | 30.0% | |
| GAAAAAGATAGACATATGGT+AGG | + | chr1.3:64602628-64602647 | MS.gene001704:intron | 30.0% | |
| GTTAAAAAAATTGACACGGT+TGG | - | chr1.3:64602694-64602713 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | + | chr1.3:64601342-64601361 | MS.gene001704:CDS | 30.0% | |
| ! | AACTAAGAAGGTATAGTTCA+CGG | - | chr1.3:64601408-64601427 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.3:64603069-64603088 | MS.gene001704:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+GGG | + | chr1.3:64601557-64601576 | MS.gene001704:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.3:64603072-64603091 | MS.gene001704:CDS | 30.0% |
| ! | TCATGTTAATGAACTTGTTC+AGG | + | chr1.3:64601556-64601575 | MS.gene001704:CDS | 30.0% |
| !! | AACTTGAGTTGAATCAATTC+GGG | + | chr1.3:64601681-64601700 | MS.gene001704:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr1.3:64601680-64601699 | MS.gene001704:CDS | 30.0% |
| !! | TAGTTTGTGTACTTTTACTC+AGG | + | chr1.3:64602566-64602585 | MS.gene001704:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | chr1.3:64601841-64601860 | MS.gene001704:CDS | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | + | chr1.3:64603050-64603069 | MS.gene001704:CDS | 35.0% | |
| ACTCATAGCTTGAACTAAGA+AGG | - | chr1.3:64601420-64601439 | None:intergenic | 35.0% | |
| AGAAGCAAGGAATTAAAGTG+AGG | + | chr1.3:64601942-64601961 | MS.gene001704:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.3:64602867-64602886 | MS.gene001704:CDS | 35.0% | |
| ATCATGGGGTGAAATAAGTT+TGG | - | chr1.3:64601525-64601544 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | + | chr1.3:64603153-64603172 | MS.gene001704:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.3:64601715-64601734 | MS.gene001704:CDS | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | + | chr1.3:64601752-64601771 | MS.gene001704:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr1.3:64601827-64601846 | MS.gene001704:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.3:64602960-64602979 | MS.gene001704:CDS | 35.0% | |
| GTTGAAATTCTCGATGTTGT+AGG | + | chr1.3:64602798-64602817 | MS.gene001704:intron | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr1.3:64601511-64601530 | None:intergenic | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | + | chr1.3:64602186-64602205 | MS.gene001704:CDS | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | + | chr1.3:64601751-64601770 | MS.gene001704:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | + | chr1.3:64601302-64601321 | MS.gene001704:CDS | 35.0% | |
| ! | ACTAAGAAGGTATAGTTCAC+GGG | - | chr1.3:64601407-64601426 | None:intergenic | 35.0% |
| ! | ATGATTGGAGTGTCTATCAT+GGG | - | chr1.3:64601540-64601559 | None:intergenic | 35.0% |
| ! | TCAAGAGCTTTTGTCAGATA+AGG | - | chr1.3:64603310-64603329 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | + | chr1.3:64601976-64601995 | MS.gene001704:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr1.3:64601840-64601859 | MS.gene001704:CDS | 35.0% |
| AGGGATCCATGATTTAGACT+TGG | - | chr1.3:64602540-64602559 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr1.3:64603027-64603046 | MS.gene001704:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr1.3:64603207-64603226 | MS.gene001704:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr1.3:64602968-64602987 | MS.gene001704:CDS | 40.0% | |
| CTTGTTCAGGGAATCATTGA+AGG | + | chr1.3:64601569-64601588 | MS.gene001704:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr1.3:64601889-64601908 | MS.gene001704:CDS | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | + | chr1.3:64603049-64603068 | MS.gene001704:CDS | 40.0% | |
| GACATGCCAAGTCTAAATCA+TGG | + | chr1.3:64602531-64602550 | MS.gene001704:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr1.3:64603107-64603126 | MS.gene001704:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr1.3:64602967-64602986 | MS.gene001704:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | + | chr1.3:64601818-64601837 | MS.gene001704:CDS | 40.0% | |
| TATCTTGCGATAACTGGTGT+AGG | + | chr1.3:64601308-64601327 | MS.gene001704:CDS | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | - | chr1.3:64601749-64601768 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.3:64603252-64603271 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.3:64601718-64601737 | MS.gene001704:CDS | 40.0% | |
| TTACCCTGGTCAAAAATGCA+CGG | + | chr1.3:64601367-64601386 | MS.gene001704:CDS | 40.0% | |
| ! | AAGAAAGCATGGATTTACCC+TGG | + | chr1.3:64601353-64601372 | MS.gene001704:CDS | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | - | chr1.3:64602206-64602225 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | chr1.3:64601289-64601308 | None:intergenic | 40.0% |
| ! | CATGATTGGAGTGTCTATCA+TGG | - | chr1.3:64601541-64601560 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGGAGTTTTT+CGG | - | chr1.3:64601444-64601463 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+GGG | - | chr1.3:64601539-64601558 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | chr1.3:64601845-64601864 | MS.gene001704:CDS | 40.0% |
| !! | GGAATAACTGAAGGTGCTAT+GGG | + | chr1.3:64603189-64603208 | MS.gene001704:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+TGG | + | chr1.3:64603258-64603277 | MS.gene001704:CDS | 45.0% | |
| AGGTATAGTTCACGGGTGAA+AGG | - | chr1.3:64601400-64601419 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | chr1.3:64602966-64602985 | MS.gene001704:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | + | chr1.3:64602097-64602116 | MS.gene001704:CDS | 45.0% | |
| CTCGATGTTGTAGGTACAAG+AGG | + | chr1.3:64602807-64602826 | MS.gene001704:intron | 45.0% | |
| CTTTCATGATCGTCAACACG+AGG | - | chr1.3:64601488-64601507 | None:intergenic | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | + | chr1.3:64601907-64601926 | MS.gene001704:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | + | chr1.3:64602816-64602835 | MS.gene001704:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.3:64602873-64602892 | MS.gene001704:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr1.3:64603110-64603129 | MS.gene001704:CDS | 45.0% | |
| TGCTGAGGCTAATTCTGAGT+TGG | + | chr1.3:64602006-64602025 | MS.gene001704:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.3:64603249-64603268 | None:intergenic | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | + | chr1.3:64603162-64603181 | MS.gene001704:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | + | chr1.3:64602815-64602834 | MS.gene001704:intron | 45.0% | |
| TTGCTTGCGAGCATAAAACG+TGG | - | chr1.3:64602926-64602945 | None:intergenic | 45.0% | |
| ! | AAGACCGTGCATTTTTGACC+AGG | - | chr1.3:64601374-64601393 | None:intergenic | 45.0% |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr1.3:64603180-64603199 | MS.gene001704:CDS | 45.0% |
| ! | AGACCGTGCATTTTTGACCA+GGG | - | chr1.3:64601373-64601392 | None:intergenic | 45.0% |
| ! | TGAGTTGGCCAAGAAGAAAG+CGG | + | chr1.3:64602021-64602040 | MS.gene001704:CDS | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | + | chr1.3:64603165-64603184 | MS.gene001704:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | + | chr1.3:64603166-64603185 | MS.gene001704:CDS | 45.0% |
| !! | GGGAATAACTGAAGGTGCTA+TGG | + | chr1.3:64603188-64603207 | MS.gene001704:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | + | chr1.3:64603167-64603186 | MS.gene001704:CDS | 45.0% |
| ACGAGGACCGATAGTGAAGA+CGG | - | chr1.3:64601471-64601490 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.3:64603282-64603301 | MS.gene001704:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | + | chr1.3:64601906-64601925 | MS.gene001704:CDS | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | - | chr1.3:64601618-64601637 | None:intergenic | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | - | chr1.3:64603294-64603313 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+AGG | + | chr1.3:64601929-64601948 | MS.gene001704:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.3:64601790-64601809 | MS.gene001704:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | + | chr1.3:64601982-64602001 | MS.gene001704:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.3:64601789-64601808 | MS.gene001704:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.3:64601728-64601747 | MS.gene001704:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | + | chr1.3:64601620-64601639 | MS.gene001704:CDS | 50.0% |
| ! | GCAACATGCCAGTTTGCTCA+TGG | - | chr1.3:64603269-64603288 | None:intergenic | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | + | chr1.3:64602894-64602913 | MS.gene001704:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | - | chr1.3:64601624-64601643 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | + | chr1.3:64601769-64601788 | MS.gene001704:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | + | chr1.3:64603168-64603187 | MS.gene001704:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | chr1.3:64602081-64602100 | MS.gene001704:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | - | chr1.3:64601455-64601474 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | chr1.3:64603291-64603310 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | chr1.3:64601454-64601473 | None:intergenic | 55.0% | |
| AGCTGCTTCCATGACCATGG+AGG | + | chr1.3:64601607-64601626 | MS.gene001704:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | chr1.3:64602072-64602091 | MS.gene001704:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr1.3:64603117-64603136 | MS.gene001704:CDS | 55.0% | |
| CAGAGGGGATTGCGACACTT+GGG | + | chr1.3:64602983-64603002 | MS.gene001704:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.3:64603281-64603300 | MS.gene001704:CDS | 55.0% | |
| CCATGGTCATGGAAGCAGCT+AGG | - | chr1.3:64601607-64601626 | None:intergenic | 55.0% | |
| CCTAGCTGCTTCCATGACCA+TGG | + | chr1.3:64601604-64601623 | MS.gene001704:CDS | 55.0% | |
| CTCCCTGCCGTCTTCACTAT+CGG | + | chr1.3:64601461-64601480 | MS.gene001704:CDS | 55.0% | |
| GACCGATAGTGAAGACGGCA+GGG | - | chr1.3:64601466-64601485 | None:intergenic | 55.0% | |
| GCGACACTTGGGAATGCTCA+AGG | + | chr1.3:64602994-64603013 | MS.gene001704:CDS | 55.0% | |
| GGAAGCTGAGTTACAAGGCG+AGG | + | chr1.3:64602102-64602121 | MS.gene001704:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | chr1.3:64602066-64602085 | MS.gene001704:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr1.3:64601911-64601930 | MS.gene001704:CDS | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | + | chr1.3:64601610-64601629 | MS.gene001704:CDS | 55.0% | |
| TGGCCAAGAAGAAAGCGGCT+TGG | + | chr1.3:64602026-64602045 | MS.gene001704:CDS | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | chr1.3:64602080-64602099 | MS.gene001704:CDS | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | + | chr1.3:64602033-64602052 | MS.gene001704:CDS | 55.0% |
| ! | GGTCCAAGCCGCTTTCTTCT+TGG | - | chr1.3:64602032-64602051 | None:intergenic | 55.0% |
| CTGGCATGTTGCCTCCTGCT+TGG | + | chr1.3:64603277-64603296 | MS.gene001704:CDS | 60.0% | |
| GAGAGAGGCTGAGGTTGCTG+AGG | + | chr1.3:64601991-64602010 | MS.gene001704:CDS | 60.0% | |
| GCAGAGGGGATTGCGACACT+TGG | + | chr1.3:64602982-64603001 | MS.gene001704:CDS | 60.0% | |
| GGACCGATAGTGAAGACGGC+AGG | - | chr1.3:64601467-64601486 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | chr1.3:64602057-64602076 | MS.gene001704:CDS | 60.0% | |
| TTCAAGTCCGCGTACCGCCT+CGG | - | chr1.3:64603127-64603146 | None:intergenic | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | + | chr1.3:64602036-64602055 | MS.gene001704:CDS | 60.0% |
| TTCAGCCACCTGAGCCGCCT+TGG | - | chr1.3:64602053-64602072 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | chr1.3:64602045-64602064 | MS.gene001704:CDS | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | + | chr1.3:64602042-64602061 | MS.gene001704:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 64601281 | 64603329 | 64601281 | ID=MS.gene001704 |
| chr1.3 | mRNA | 64601281 | 64603329 | 64601281 | ID=MS.gene001704.t1;Parent=MS.gene001704 |
| chr1.3 | exon | 64601281 | 64602207 | 64601281 | ID=MS.gene001704.t1.exon1;Parent=MS.gene001704.t1 |
| chr1.3 | CDS | 64601281 | 64602207 | 64601281 | ID=cds.MS.gene001704.t1;Parent=MS.gene001704.t1 |
| chr1.3 | exon | 64602820 | 64603329 | 64602820 | ID=MS.gene001704.t1.exon2;Parent=MS.gene001704.t1 |
| chr1.3 | CDS | 64602820 | 64603329 | 64602820 | ID=cds.MS.gene001704.t1;Parent=MS.gene001704.t1 |
| Gene Sequence |
| Protein sequence |
