Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005248.t1 | XP_003591134.1 | 89.1 | 478 | 46 | 2 | 1 | 478 | 1 | 472 | 1.70E-179 | 639 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005248.t1 | D2XNR2 | 89.1 | 478 | 46 | 2 | 1 | 478 | 1 | 472 | 4.1e-182 | 639.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005248.t1 | G7I8N5 | 89.1 | 478 | 46 | 2 | 1 | 478 | 1 | 472 | 1.2e-179 | 639.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005248.t1 | MTR_1g083190 | 96.444 | 478 | 11 | 2 | 1 | 478 | 1 | 472 | 0.0 | 922 |
| MS.gene005248.t1 | MTR_3g106420 | 93.763 | 481 | 26 | 2 | 1 | 478 | 1 | 480 | 0.0 | 882 |
| MS.gene005248.t1 | MTR_3g106480 | 90.188 | 479 | 43 | 2 | 3 | 478 | 1 | 478 | 0.0 | 870 |
| MS.gene005248.t1 | MTR_3g106485 | 90.966 | 476 | 41 | 2 | 3 | 478 | 1 | 474 | 0.0 | 843 |
| MS.gene005248.t1 | MTR_3g106430 | 92.000 | 475 | 36 | 2 | 3 | 477 | 1 | 473 | 0.0 | 825 |
| MS.gene005248.t1 | MTR_1g073400 | 89.076 | 476 | 50 | 2 | 3 | 478 | 1 | 474 | 0.0 | 813 |
| MS.gene005248.t1 | MTR_1g071130 | 83.613 | 476 | 51 | 2 | 3 | 478 | 1 | 449 | 0.0 | 805 |
| MS.gene005248.t1 | MTR_1g115145 | 86.486 | 481 | 52 | 6 | 3 | 478 | 1 | 473 | 0.0 | 803 |
| MS.gene005248.t1 | MTR_3g106470 | 82.636 | 478 | 23 | 4 | 3 | 477 | 32 | 452 | 0.0 | 739 |
| MS.gene005248.t1 | MTR_8g063830 | 79.741 | 464 | 52 | 5 | 3 | 463 | 1 | 425 | 0.0 | 656 |
| MS.gene005248.t1 | MTR_3g065540 | 62.609 | 115 | 16 | 1 | 42 | 156 | 14 | 101 | 6.73e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005248.t1 | AT5G25260 | 72.727 | 473 | 115 | 3 | 3 | 473 | 1 | 461 | 0.0 | 706 |
| MS.gene005248.t1 | AT5G25250 | 72.611 | 471 | 117 | 2 | 3 | 473 | 1 | 459 | 0.0 | 701 |
| MS.gene005248.t1 | AT5G64870 | 70.402 | 473 | 125 | 3 | 4 | 473 | 3 | 463 | 0.0 | 642 |
Find 117 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.119823 | 1.4:-67262008 | MS.gene005248:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 1.4:-67260830 | MS.gene005248:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 1.4:-67262007 | MS.gene005248:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1.4:+67262207 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.4:-67261679 | MS.gene005248:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.4:-67261932 | MS.gene005248:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.329722 | 1.4:+67261964 | None:intergenic |
| AAGACAGCGGGGAGAATAAA+AGG | 0.329818 | 1.4:+67262307 | None:intergenic |
| AGAGCTTTATGCAAAGAAAA+AGG | 0.337974 | 1.4:-67261015 | MS.gene005248:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 1.4:-67260903 | MS.gene005248:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 1.4:-67262079 | MS.gene005248:CDS |
| ACTAACGGTGGCGGCGATAA+TGG | 0.358246 | 1.4:-67260807 | MS.gene005248:CDS |
| TCAAAACCATGAAAATTTAC+CGG | 0.364824 | 1.4:-67262492 | None:intergenic |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.373363 | 1.4:-67261157 | MS.gene005248:intron |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 1.4:+67262355 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 1.4:-67261919 | MS.gene005248:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 1.4:+67260825 | None:intergenic |
| CGGTCAATCCTGTTCTGTCT+TGG | 0.385218 | 1.4:-67262386 | MS.gene005248:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.4:-67262044 | MS.gene005248:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 1.4:-67262457 | MS.gene005248:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 1.4:-67261717 | MS.gene005248:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1.4:-67262202 | MS.gene005248:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.421816 | 1.4:+67261709 | None:intergenic |
| GGCTGGGGAGGGTGACAAGG+AGG | 0.433381 | 1.4:-67261831 | MS.gene005248:CDS |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 1.4:-67261918 | MS.gene005248:CDS |
| TTATTGCGATGCAGAGGGCT+GGG | 0.452498 | 1.4:-67261847 | MS.gene005248:CDS |
| CGGTCCTCGTGTAGATGATA+AGG | 0.455566 | 1.4:-67262278 | MS.gene005248:CDS |
| AGCATGCGGTGAAATAAGTT+TGG | 0.456709 | 1.4:+67262237 | None:intergenic |
| GTTATTGCGATGCAGAGGGC+TGG | 0.467250 | 1.4:-67261848 | MS.gene005248:CDS |
| GTAACATCTCCGTTTGCTCA+TGG | 0.473481 | 1.4:+67260715 | None:intergenic |
| TGCGATGCAGAGGGCTGGGG+AGG | 0.475380 | 1.4:-67261843 | MS.gene005248:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 1.4:-67262406 | MS.gene005248:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.4:-67261714 | MS.gene005248:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 1.4:-67262298 | MS.gene005248:CDS |
| GAGAATAAAAGGAAGTTTCT+CGG | 0.481453 | 1.4:+67262318 | None:intergenic |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 1.4:-67260923 | MS.gene005248:CDS |
| TGAGAGGTCCAAGACAGAAC+AGG | 0.492527 | 1.4:+67262378 | None:intergenic |
| CAAGACAGAACAGGATTGAC+CGG | 0.494108 | 1.4:+67262387 | None:intergenic |
| GTTACCACCACCTGCTTGGA+TGG | 0.501753 | 1.4:-67260697 | MS.gene005248:CDS |
| AGATGTTACCACCACCTGCT+TGG | 0.503612 | 1.4:-67260701 | MS.gene005248:CDS |
| CAAAACCATGAAAATTTACC+GGG | 0.508642 | 1.4:-67262491 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 1.4:-67261105 | MS.gene005248:CDS |
| AGTACACTTCTTAATGCACT+TGG | 0.511750 | 1.4:-67260945 | MS.gene005248:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 1.4:-67262149 | MS.gene005248:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 1.4:+67262295 | None:intergenic |
| CGATAATGGTGAAGGTGCCA+TGG | 0.514200 | 1.4:-67260793 | MS.gene005248:CDS |
| TTCTGTCTTGGACCTCTCAC+CGG | 0.515981 | 1.4:-67262374 | MS.gene005248:CDS |
| GAGGGCTGGGGAGGGTGACA+AGG | 0.520045 | 1.4:-67261834 | MS.gene005248:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.523986 | 1.4:-67261693 | MS.gene005248:CDS |
| GCGATGCAGAGGGCTGGGGA+GGG | 0.526835 | 1.4:-67261842 | MS.gene005248:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.4:+67262251 | None:intergenic |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 1.4:+67260776 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 1.4:+67260687 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 1.4:-67261662 | MS.gene005248:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 1.4:-67261753 | MS.gene005248:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.4:-67261678 | MS.gene005248:CDS |
| TATTGCGATGCAGAGGGCTG+GGG | 0.546542 | 1.4:-67261846 | MS.gene005248:CDS |
| TGCTGCTTCCATGACGATGG+AGG | 0.547408 | 1.4:-67262152 | MS.gene005248:CDS |
| TAAGACCGTCCATGAGCAAA+CGG | 0.547678 | 1.4:-67260724 | MS.gene005248:CDS |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 1.4:-67261970 | MS.gene005248:CDS |
| GTGACACTTGGACAAGCTCA+AGG | 0.553312 | 1.4:-67260978 | MS.gene005248:CDS |
| AGTCGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.4:-67261687 | MS.gene005248:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 1.4:-67261702 | MS.gene005248:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.4:-67262041 | MS.gene005248:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 1.4:-67260822 | MS.gene005248:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 1.4:+67261585 | None:intergenic |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 1.4:-67261726 | MS.gene005248:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 1.4:-67262417 | MS.gene005248:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 1.4:+67262144 | None:intergenic |
| GCAGAGGGAATTGTGACACT+TGG | 0.575919 | 1.4:-67260990 | MS.gene005248:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 1.4:-67260774 | MS.gene005248:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 1.4:-67261914 | MS.gene005248:CDS |
| TTACCACCACCTGCTTGGAT+GGG | 0.582312 | 1.4:-67260696 | MS.gene005248:CDS |
| ACTCCCATCCAAGCAGGTGG+TGG | 0.582546 | 1.4:+67260693 | None:intergenic |
| TCTTGCTGCTTCCATGACGA+TGG | 0.585164 | 1.4:-67262155 | MS.gene005248:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 1.4:-67261733 | MS.gene005248:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 1.4:-67260922 | MS.gene005248:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.4:-67261853 | MS.gene005248:CDS |
| GCTGGGGAGGGTGACAAGGA+GGG | 0.589298 | 1.4:-67261830 | MS.gene005248:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.4:-67261774 | MS.gene005248:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 1.4:-67261078 | MS.gene005248:CDS |
| GATAATGGTGAAGGTGCCAT+GGG | 0.600255 | 1.4:-67260792 | MS.gene005248:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.4:-67261099 | MS.gene005248:CDS |
| TCATGGACGGTCTTAAACAA+AGG | 0.601527 | 1.4:+67260732 | None:intergenic |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 1.4:+67262342 | None:intergenic |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 1.4:-67261649 | MS.gene005248:CDS |
| TGACACTTGGACAAGCTCAA+GGG | 0.610411 | 1.4:-67260977 | MS.gene005248:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 1.4:-67261990 | MS.gene005248:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.4:-67261941 | MS.gene005248:CDS |
| GACACTTGGACAAGCTCAAG+GGG | 0.615609 | 1.4:-67260976 | MS.gene005248:CDS |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 1.4:+67262362 | None:intergenic |
| GATTGCTAAGATTAATGCTG+AGG | 0.620636 | 1.4:-67260865 | MS.gene005248:CDS |
| AGTATTTGGACTAACGGTGG+CGG | 0.622001 | 1.4:-67260816 | MS.gene005248:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.627939 | 1.4:-67261156 | MS.gene005248:intron |
| CATCTCCGTTTGCTCATGGA+CGG | 0.630434 | 1.4:+67260719 | None:intergenic |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 1.4:-67261738 | MS.gene005248:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.4:-67261852 | MS.gene005248:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.639303 | 1.4:-67262190 | MS.gene005248:CDS |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 1.4:-67261969 | MS.gene005248:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 1.4:-67261573 | MS.gene005248:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.4:-67261870 | MS.gene005248:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.658059 | 1.4:-67261960 | MS.gene005248:CDS |
| GGTGGCGGCGATAATGGTGA+AGG | 0.658257 | 1.4:-67260801 | MS.gene005248:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.4:-67260900 | MS.gene005248:CDS |
| TGGACGGTCTTAAACAAAGG+TGG | 0.660087 | 1.4:+67260735 | None:intergenic |
| AAGACAGAACAGGATTGACC+GGG | 0.664744 | 1.4:+67262388 | None:intergenic |
| ATTAGTATTTGGACTAACGG+TGG | 0.669931 | 1.4:-67260819 | MS.gene005248:CDS |
| TCAAAATACCTGTTATCACA+AGG | 0.672413 | 1.4:+67262449 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.674742 | 1.4:+67260690 | None:intergenic |
| CTTTCCTTATCATCTACACG+AGG | 0.686856 | 1.4:+67262274 | None:intergenic |
| ATTAATGCTGAGGCAATACG+CGG | 0.688568 | 1.4:-67260855 | MS.gene005248:CDS |
| AAGCAATTGGTGGATGTGCG+CGG | 0.690257 | 1.4:-67262031 | MS.gene005248:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 1.4:-67261817 | MS.gene005248:CDS |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 1.4:+67262296 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 1.4:-67261723 | MS.gene005248:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 1.4:+67262294 | None:intergenic |
| TGATTGGAGTGTCTAGCATG+CGG | 0.779262 | 1.4:+67262223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTGAATTTGCA+TGG | + | chr1.4:67261618-67261637 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAGACTAATGAA+AGG | - | chr1.4:67261710-67261729 | MS.gene005248:CDS | 15.0% |
| !!! | ACATTACACTATTATTTTTT+TGG | - | chr1.4:67261952-67261971 | MS.gene005248:CDS | 15.0% |
| !!! | TCATTATTGATTATGTTATA+TGG | - | chr1.4:67261793-67261812 | MS.gene005248:CDS | 15.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | - | chr1.4:67261967-67261986 | MS.gene005248:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr1.4:67260951-67260970 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr1.4:67262333-67262352 | MS.gene005248:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr1.4:67261672-67261691 | MS.gene005248:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr1.4:67261148-67261167 | MS.gene005248:CDS | 25.0% |
| ! | TAATGTAACAAAGATTAAGC+AGG | + | chr1.4:67261938-67261957 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr1.4:67261147-67261166 | MS.gene005248:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.4:67262333-67262352 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr1.4:67261237-67261256 | MS.gene005248:intron | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr1.4:67261911-67261930 | MS.gene005248:CDS | 25.0% |
| GAGAATAAAAGGAAGTTTCT+CGG | + | chr1.4:67260840-67260859 | None:intergenic | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr1.4:67261582-67261601 | MS.gene005248:CDS | 30.0% | |
| TCAAAATACCTGTTATCACA+AGG | + | chr1.4:67260709-67260728 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr1.4:67262325-67262344 | MS.gene005248:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | - | chr1.4:67261971-67261990 | MS.gene005248:CDS | 30.0% | |
| ! | AGAGCTTTATGCAAAGAAAA+AGG | - | chr1.4:67262140-67262159 | MS.gene005248:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr1.4:67262252-67262271 | MS.gene005248:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr1.4:67260953-67260972 | MS.gene005248:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr1.4:67262255-67262274 | MS.gene005248:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr1.4:67261236-67261255 | MS.gene005248:intron | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr1.4:67261372-67261391 | MS.gene005248:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr1.4:67261076-67261095 | MS.gene005248:CDS | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr1.4:67262233-67262252 | MS.gene005248:CDS | 35.0% | |
| AAACTTTGGATGGTGTATGT+AGG | - | chr1.4:67261981-67262000 | MS.gene005248:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr1.4:67262050-67262069 | MS.gene005248:CDS | 35.0% | |
| AGTACACTTCTTAATGCACT+TGG | - | chr1.4:67262210-67262229 | MS.gene005248:CDS | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr1.4:67262336-67262355 | MS.gene005248:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.4:67261111-67261130 | MS.gene005248:CDS | 35.0% | |
| GATTGCTAAGATTAATGCTG+AGG | - | chr1.4:67262290-67262309 | MS.gene005248:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr1.4:67261223-67261242 | MS.gene005248:intron | 35.0% | |
| GCTGTACAAAAAACAGAAAG+AGG | - | chr1.4:67262023-67262042 | MS.gene005248:CDS | 35.0% | |
| GCTTTATGCAAAGAAAAAGG+AGG | - | chr1.4:67262143-67262162 | MS.gene005248:CDS | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr1.4:67260738-67260757 | MS.gene005248:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr1.4:67260907-67260926 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr1.4:67260698-67260717 | MS.gene005248:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr1.4:67260749-67260768 | MS.gene005248:CDS | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr1.4:67261241-67261260 | MS.gene005248:intron | 35.0% |
| ! | GAAAGGATAGACAACTTTTG+AGG | - | chr1.4:67261727-67261746 | MS.gene005248:CDS | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | + | chr1.4:67261573-67261592 | None:intergenic | 35.0% |
| !! | GTTTGAACTGTTTTGTTCCT+TGG | + | chr1.4:67261036-67261055 | None:intergenic | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr1.4:67261338-67261357 | MS.gene005248:intron | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr1.4:67260816-67260835 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr1.4:67262382-67262401 | None:intergenic | 40.0% | |
| AGCATGCGGTGAAATAAGTT+TGG | + | chr1.4:67260921-67260940 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr1.4:67261506-67261525 | MS.gene005248:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr1.4:67262381-67262400 | MS.gene005248:CDS | 40.0% | |
| ATTAATGCTGAGGCAATACG+CGG | - | chr1.4:67262300-67262319 | MS.gene005248:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr1.4:67260965-67260984 | MS.gene005248:CDS | 40.0% | |
| CTTTCCTTATCATCTACACG+AGG | + | chr1.4:67260884-67260903 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr1.4:67261285-67261304 | MS.gene005248:intron | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr1.4:67262232-67262251 | MS.gene005248:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr1.4:67261999-67262018 | MS.gene005248:CDS | 40.0% | |
| TCATGGACGGTCTTAAACAA+AGG | + | chr1.4:67262426-67262445 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.4:67261114-67261133 | MS.gene005248:CDS | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr1.4:67261998-67262017 | MS.gene005248:CDS | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr1.4:67260803-67260822 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCAACC+CGG | + | chr1.4:67260685-67260704 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr1.4:67261417-67261436 | MS.gene005248:intron | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr1.4:67261602-67261621 | None:intergenic | 40.0% |
| AAGACAGAACAGGATTGACC+GGG | + | chr1.4:67260770-67260789 | None:intergenic | 45.0% | |
| AAGACAGCGGGGAGAATAAA+AGG | + | chr1.4:67260851-67260870 | None:intergenic | 45.0% | |
| AGTATTTGGACTAACGGTGG+CGG | - | chr1.4:67262339-67262358 | MS.gene005248:CDS | 45.0% | |
| CAAGACAGAACAGGATTGAC+CGG | + | chr1.4:67260771-67260790 | None:intergenic | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr1.4:67261493-67261512 | MS.gene005248:intron | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr1.4:67261303-67261322 | MS.gene005248:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.4:67261381-67261400 | MS.gene005248:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr1.4:67262150-67262169 | MS.gene005248:CDS | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | - | chr1.4:67261186-67261205 | MS.gene005248:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr1.4:67261402-67261421 | MS.gene005248:intron | 45.0% | |
| GTAACATCTCCGTTTGCTCA+TGG | + | chr1.4:67262443-67262462 | None:intergenic | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | + | chr1.4:67261194-67261213 | None:intergenic | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr1.4:67261214-67261233 | MS.gene005248:intron | 45.0% | |
| TAAGACCGTCCATGAGCAAA+CGG | - | chr1.4:67262431-67262450 | MS.gene005248:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr1.4:67262056-67262075 | MS.gene005248:CDS | 45.0% | |
| TGACACTTGGACAAGCTCAA+GGG | - | chr1.4:67262178-67262197 | MS.gene005248:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr1.4:67262149-67262168 | MS.gene005248:CDS | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | - | chr1.4:67261185-67261204 | MS.gene005248:intron | 45.0% | |
| TGGACGGTCTTAAACAAAGG+TGG | + | chr1.4:67262423-67262442 | None:intergenic | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr1.4:67261165-67261184 | MS.gene005248:intron | 45.0% | |
| ! | TGATTGGAGTGTCTAGCATG+CGG | + | chr1.4:67260935-67260954 | None:intergenic | 45.0% |
| !! | GATAATGGTGAAGGTGCCAT+GGG | - | chr1.4:67262363-67262382 | MS.gene005248:CDS | 45.0% |
| AGATGTTACCACCACCTGCT+TGG | - | chr1.4:67262454-67262473 | MS.gene005248:CDS | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr1.4:67260864-67260883 | None:intergenic | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr1.4:67260796-67260815 | None:intergenic | 50.0% | |
| CATCTCCGTTTGCTCATGGA+CGG | + | chr1.4:67262439-67262458 | None:intergenic | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr1.4:67261302-67261321 | MS.gene005248:intron | 50.0% | |
| CGGTCAATCCTGTTCTGTCT+TGG | - | chr1.4:67260769-67260788 | MS.gene005248:CDS | 50.0% | |
| CGGTCCTCGTGTAGATGATA+AGG | - | chr1.4:67260877-67260896 | MS.gene005248:CDS | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr1.4:67261014-67261033 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr1.4:67261195-67261214 | MS.gene005248:intron | 50.0% | |
| GACACTTGGACAAGCTCAAG+GGG | - | chr1.4:67262179-67262198 | MS.gene005248:CDS | 50.0% | |
| GCAGAGGGAATTGTGACACT+TGG | - | chr1.4:67262165-67262184 | MS.gene005248:CDS | 50.0% | |
| GTGACACTTGGACAAGCTCA+AGG | - | chr1.4:67262177-67262196 | MS.gene005248:CDS | 50.0% | |
| TGAGAGGTCCAAGACAGAAC+AGG | + | chr1.4:67260780-67260799 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr1.4:67261422-67261441 | MS.gene005248:intron | 50.0% | |
| TTACCACCACCTGCTTGGAT+GGG | - | chr1.4:67262459-67262478 | MS.gene005248:CDS | 50.0% | |
| TTATTGCGATGCAGAGGGCT+GGG | - | chr1.4:67261308-67261327 | MS.gene005248:intron | 50.0% | |
| TTCTGTCTTGGACCTCTCAC+CGG | - | chr1.4:67260781-67260800 | MS.gene005248:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCG+CGG | - | chr1.4:67261124-67261143 | MS.gene005248:CDS | 50.0% |
| ! | ACGATGGAGGAGGTTTTCCA+AGG | - | chr1.4:67261016-67261035 | MS.gene005248:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr1.4:67262077-67262096 | MS.gene005248:CDS | 50.0% |
| ! | TCTTGCTGCTTCCATGACGA+TGG | - | chr1.4:67261000-67261019 | MS.gene005248:CDS | 50.0% |
| !! | CGATAATGGTGAAGGTGCCA+TGG | - | chr1.4:67262362-67262381 | MS.gene005248:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr1.4:67261477-67261496 | MS.gene005248:intron | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr1.4:67262468-67262487 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr1.4:67260857-67260876 | MS.gene005248:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr1.4:67260862-67260881 | None:intergenic | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr1.4:67260863-67260882 | None:intergenic | 55.0% | |
| GTTACCACCACCTGCTTGGA+TGG | - | chr1.4:67262458-67262477 | MS.gene005248:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr1.4:67261307-67261326 | MS.gene005248:intron | 55.0% | |
| TATTGCGATGCAGAGGGCTG+GGG | - | chr1.4:67261309-67261328 | MS.gene005248:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr1.4:67261006-67261025 | MS.gene005248:CDS | 55.0% | |
| ! | ACTAACGGTGGCGGCGATAA+TGG | - | chr1.4:67262348-67262367 | MS.gene005248:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr1.4:67261476-67261495 | MS.gene005248:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr1.4:67261429-67261448 | MS.gene005248:intron | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr1.4:67261003-67261022 | MS.gene005248:CDS | 55.0% |
| ACTCCCATCCAAGCAGGTGG+TGG | + | chr1.4:67262465-67262484 | None:intergenic | 60.0% | |
| AGTCGAGGCGAAGAAGGCTG+TGG | - | chr1.4:67261468-67261487 | MS.gene005248:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr1.4:67262471-67262490 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | - | chr1.4:67261462-67261481 | MS.gene005248:intron | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr1.4:67261432-67261451 | MS.gene005248:intron | 60.0% |
| ! | GGTGGCGGCGATAATGGTGA+AGG | - | chr1.4:67262354-67262373 | MS.gene005248:CDS | 60.0% |
| GCTGGGGAGGGTGACAAGGA+GGG | - | chr1.4:67261325-67261344 | MS.gene005248:intron | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr1.4:67261453-67261472 | MS.gene005248:intron | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr1.4:67261449-67261468 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr1.4:67261441-67261460 | MS.gene005248:intron | 65.0% | |
| GAGGGCTGGGGAGGGTGACA+AGG | - | chr1.4:67261321-67261340 | MS.gene005248:intron | 70.0% | |
| GCGATGCAGAGGGCTGGGGA+GGG | - | chr1.4:67261313-67261332 | MS.gene005248:intron | 70.0% | |
| GGCTGGGGAGGGTGACAAGG+AGG | - | chr1.4:67261324-67261343 | MS.gene005248:intron | 70.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr1.4:67261438-67261457 | MS.gene005248:intron | 70.0% | |
| TGCGATGCAGAGGGCTGGGG+AGG | - | chr1.4:67261312-67261331 | MS.gene005248:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67260671 | 67262506 | 67260671 | ID=MS.gene005248 |
| chr1.4 | mRNA | 67260671 | 67262506 | 67260671 | ID=MS.gene005248.t1;Parent=MS.gene005248 |
| chr1.4 | exon | 67261574 | 67262506 | 67261574 | ID=MS.gene005248.t1.exon1;Parent=MS.gene005248.t1 |
| chr1.4 | CDS | 67261574 | 67262506 | 67261574 | ID=cds.MS.gene005248.t1;Parent=MS.gene005248.t1 |
| chr1.4 | exon | 67260671 | 67261174 | 67260671 | ID=MS.gene005248.t1.exon2;Parent=MS.gene005248.t1 |
| chr1.4 | CDS | 67260671 | 67261174 | 67260671 | ID=cds.MS.gene005248.t1;Parent=MS.gene005248.t1 |
| Gene Sequence |
| Protein sequence |
