Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014875.t1 | XP_003603332.1 | 90 | 480 | 48 | 0 | 1 | 480 | 1 | 480 | 7.50E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014875.t1 | D2XNQ9 | 90.0 | 480 | 48 | 0 | 1 | 480 | 1 | 480 | 1.8e-169 | 597.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014875.t1 | G7JAE4 | 90.0 | 480 | 48 | 0 | 1 | 480 | 1 | 480 | 5.4e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014875.t1 | MTR_3g106420 | 96.667 | 480 | 16 | 0 | 1 | 480 | 1 | 480 | 0.0 | 946 |
| MS.gene014875.t1 | MTR_3g106480 | 93.096 | 478 | 33 | 0 | 3 | 480 | 1 | 478 | 0.0 | 909 |
| MS.gene014875.t1 | MTR_1g083190 | 93.542 | 480 | 23 | 1 | 1 | 480 | 1 | 472 | 0.0 | 881 |
| MS.gene014875.t1 | MTR_3g106485 | 93.933 | 478 | 25 | 2 | 3 | 480 | 1 | 474 | 0.0 | 881 |
| MS.gene014875.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 3 | 480 | 1 | 473 | 0.0 | 838 |
| MS.gene014875.t1 | MTR_1g073400 | 90.795 | 478 | 40 | 1 | 3 | 480 | 1 | 474 | 0.0 | 837 |
| MS.gene014875.t1 | MTR_3g106430 | 92.034 | 477 | 34 | 2 | 3 | 479 | 1 | 473 | 0.0 | 835 |
| MS.gene014875.t1 | MTR_1g071130 | 85.565 | 478 | 40 | 2 | 3 | 480 | 1 | 449 | 0.0 | 827 |
| MS.gene014875.t1 | MTR_3g106470 | 82.809 | 477 | 26 | 2 | 3 | 479 | 32 | 452 | 0.0 | 752 |
| MS.gene014875.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 3 | 466 | 1 | 425 | 0.0 | 666 |
| MS.gene014875.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 6.39e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014875.t1 | AT5G25260 | 73.784 | 473 | 112 | 2 | 3 | 475 | 1 | 461 | 0.0 | 722 |
| MS.gene014875.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 3 | 475 | 1 | 459 | 0.0 | 714 |
| MS.gene014875.t1 | AT5G64870 | 70.339 | 472 | 129 | 1 | 4 | 475 | 3 | 463 | 0.0 | 650 |
Find 120 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.3:-87376817 | MS.gene014875:CDS |
| TTTAGGTACAAGAAGCAAAT+TGG | 0.249457 | 3.3:-87375364 | MS.gene014875:intron |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.3:-87375037 | MS.gene014875:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.3:-87376816 | MS.gene014875:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.3:+87377016 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 3.3:-87376488 | MS.gene014875:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.3:-87376741 | MS.gene014875:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.3:-87377301 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.3:-87377107 | MS.gene014875:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.3:-87376888 | MS.gene014875:CDS |
| AGAGATTACTTGATGATAAA+TGG | 0.366679 | 3.3:-87375110 | MS.gene014875:CDS |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.3:+87374913 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.3:-87376728 | MS.gene014875:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.3:+87375032 | None:intergenic |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.3:+87377164 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.3:-87376853 | MS.gene014875:CDS |
| TCATGGACAGTCTTAAATAA+AGG | 0.405157 | 3.3:+87374930 | None:intergenic |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.3:-87377266 | MS.gene014875:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.3:-87377087 | MS.gene014875:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 3.3:-87376526 | MS.gene014875:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.3:-87377011 | MS.gene014875:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.3:-87376640 | MS.gene014875:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 3.3:+87376518 | None:intergenic |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.3:+87377046 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.3:-87376727 | MS.gene014875:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 3.3:-87375017 | MS.gene014875:CDS |
| CTTTGCATATAGCTCTGCTT+CGG | 0.455229 | 3.3:+87375229 | None:intergenic |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.3:-87377195 | MS.gene014875:CDS |
| TTAGGTACAAGAAGCAAATT+GGG | 0.457872 | 3.3:-87375363 | MS.gene014875:intron |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.3:-87374898 | MS.gene014875:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.3:-87376840 | MS.gene014875:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.468427 | 3.3:-87374922 | MS.gene014875:CDS |
| CAGAGGGAACTGTGACCCTT+GGG | 0.468585 | 3.3:-87375196 | MS.gene014875:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.3:+87377196 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 3.3:-87376502 | MS.gene014875:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 3.3:-87376523 | MS.gene014875:CDS |
| GGGAATAACTGAAGGTGTCA+TGG | 0.479536 | 3.3:-87374991 | MS.gene014875:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.3:+87375055 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.3:+87377282 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.3:-87376643 | MS.gene014875:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.3:+87377104 | None:intergenic |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.3:-87376958 | MS.gene014875:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.3:-87374902 | MS.gene014875:CDS |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.3:-87376639 | MS.gene014875:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.3:-87375312 | MS.gene014875:CDS |
| GCAGAGGGAACTGTGACCCT+TGG | 0.512908 | 3.3:-87375197 | MS.gene014875:CDS |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.3:-87374921 | MS.gene014875:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.3:+87377116 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.3:-87376657 | MS.gene014875:CDS |
| GGAATAACTGAAGGTGTCAT+GGG | 0.527286 | 3.3:-87374990 | MS.gene014875:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.3:+87377127 | None:intergenic |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.3:+87377060 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.3:+87374888 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.3:+87377187 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.3:-87376850 | MS.gene014875:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.3:-87376779 | MS.gene014875:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.3:-87377183 | MS.gene014875:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.3:-87376562 | MS.gene014875:CDS |
| AGAATTAGCTTGAGCCACTT+CGG | 0.542219 | 3.3:+87376569 | None:intergenic |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 3.3:-87376511 | MS.gene014875:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 3.3:-87376487 | MS.gene014875:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.3:+87376821 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.3:-87376613 | MS.gene014875:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 3.3:-87376496 | MS.gene014875:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 3.3:-87375029 | MS.gene014875:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.3:+87377151 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.3:-87374897 | MS.gene014875:CDS |
| GTGACCCTTGGGAATGCTCA+AGG | 0.570059 | 3.3:-87375185 | MS.gene014875:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.3:-87375152 | MS.gene014875:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 3.3:-87376535 | MS.gene014875:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 3.3:-87375285 | MS.gene014875:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.3:+87376953 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87374972 | MS.gene014875:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.3:-87376723 | MS.gene014875:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.3:-87376652 | MS.gene014875:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 3.3:-87376542 | MS.gene014875:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.3:-87377300 | None:intergenic |
| ACGCTCCTTGAGCATTCCCA+AGG | 0.588853 | 3.3:+87375180 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.3:+87377197 | None:intergenic |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.3:-87376961 | MS.gene014875:CDS |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 3.3:-87375011 | MS.gene014875:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.3:-87375306 | MS.gene014875:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.3:-87376651 | MS.gene014875:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.3:-87376999 | MS.gene014875:CDS |
| AGTTGCAAGGTGAGGTCGAG+AGG | 0.604843 | 3.3:-87376458 | MS.gene014875:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.3:-87376626 | MS.gene014875:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.3:+87377171 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 3.3:-87375012 | MS.gene014875:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.3:-87376471 | MS.gene014875:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.3:-87376799 | MS.gene014875:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.3:-87376750 | MS.gene014875:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.3:-87376998 | MS.gene014875:CDS |
| TGGACAGTCTTAAATAAAGG+TGG | 0.623648 | 3.3:+87374933 | None:intergenic |
| CGCTCCTTGAGCATTCCCAA+GGG | 0.624114 | 3.3:+87375181 | None:intergenic |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.3:-87376778 | MS.gene014875:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.3:+87377021 | None:intergenic |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 3.3:-87375013 | MS.gene014875:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 3.3:-87376547 | MS.gene014875:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87375072 | MS.gene014875:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.3:-87375339 | MS.gene014875:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.3:-87376964 | MS.gene014875:CDS |
| GAATCAAAGAGAGGCCGAAG+TGG | 0.645129 | 3.3:-87376583 | MS.gene014875:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.3:+87376822 | None:intergenic |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.3:-87376466 | MS.gene014875:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.3:-87376382 | MS.gene014875:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.3:-87376679 | MS.gene014875:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.3:-87375069 | MS.gene014875:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.3:+87377181 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.3:+87377258 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.3:+87374891 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.3:-87375062 | MS.gene014875:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.681438 | 3.3:-87375107 | MS.gene014875:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 3.3:-87375026 | MS.gene014875:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.3:+87377083 | None:intergenic |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 3.3:-87375014 | MS.gene014875:CDS |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.3:+87377032 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.3:-87376997 | MS.gene014875:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.3:+87377105 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.3:+87377103 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 3.3:-87376532 | MS.gene014875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTGTATAATAATTTAT+AGG | + | chr3.3:87376451-87376470 | None:intergenic | 10.0% |
| !! | TATTATAATGAGATCATAAT+TGG | - | chr3.3:87376298-87376317 | MS.gene014875:intron | 15.0% |
| !!! | AATATATATTAATTTGTTGC+TGG | + | chr3.3:87375871-87375890 | None:intergenic | 15.0% |
| !!! | ATCTGATTAAATTTTTATGA+TGG | - | chr3.3:87376526-87376545 | MS.gene014875:CDS | 15.0% |
| !!! | ATTTTTGGTGATTAAAATTT+TGG | - | chr3.3:87376774-87376793 | MS.gene014875:CDS | 15.0% |
| !! | AGAATCAAAGATAATTGTAA+TGG | - | chr3.3:87376255-87376274 | MS.gene014875:intron | 20.0% |
| !! | ATATAGGAGATTATTCAATA+TGG | - | chr3.3:87375891-87375910 | MS.gene014875:intron | 20.0% |
| !! | CTTGTATAATAATTTATAGG+TGG | + | chr3.3:87376448-87376467 | None:intergenic | 20.0% |
| !!! | AAAAGTAGTAACTTTTACAT+TGG | - | chr3.3:87376062-87376081 | MS.gene014875:intron | 20.0% |
| !!! | AACATTTACTTTTTAGATCT+TGG | - | chr3.3:87376726-87376745 | MS.gene014875:CDS | 20.0% |
| !!! | AGTCTAAATTTTTTTTTGAG+AGG | + | chr3.3:87376107-87376126 | None:intergenic | 20.0% |
| !!! | ATTAAAATTTTGGATGGTTT+AGG | - | chr3.3:87376784-87376803 | MS.gene014875:CDS | 20.0% |
| !!! | ATTTTACTGGATTACATTTT+TGG | - | chr3.3:87376759-87376778 | MS.gene014875:CDS | 20.0% |
| !!! | GATTCTCTATAAAACTTTTA+TGG | + | chr3.3:87376153-87376172 | None:intergenic | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.3:87375152-87375171 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr3.3:87377136-87377155 | MS.gene014875:CDS | 25.0% |
| ! | ACTTACTGTAGTATGTAATT+TGG | - | chr3.3:87376574-87376593 | MS.gene014875:CDS | 25.0% |
| ! | ATGATCTCATTATAATAGTG+AGG | + | chr3.3:87376295-87376314 | None:intergenic | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.3:87375349-87375368 | MS.gene014875:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.3:87375348-87375367 | MS.gene014875:CDS | 25.0% |
| ! | TGAAAGAAGTTATATTTGCA+TGG | + | chr3.3:87375819-87375838 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.3:87377136-87377155 | None:intergenic | 25.0% |
| ! | TTGTAAGGTAACATTAACTA+TGG | + | chr3.3:87376412-87376431 | None:intergenic | 25.0% |
| !! | AGAGATTACTTGATGATAAA+TGG | - | chr3.3:87377055-87377074 | MS.gene014875:CDS | 25.0% |
| !! | GTAACTTTTACATTGGAAAT+TGG | - | chr3.3:87376069-87376088 | MS.gene014875:intron | 25.0% |
| !! | TCATGTTAAACAAGTTGAAA+AGG | + | chr3.3:87376661-87376680 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.3:87375438-87375457 | MS.gene014875:intron | 25.0% |
| !! | TTCGATTGTTTTCTAATTGA+TGG | - | chr3.3:87376376-87376395 | MS.gene014875:intron | 25.0% |
| !!! | CTAAATTTTTTTTTGAGAGG+TGG | + | chr3.3:87376104-87376123 | None:intergenic | 25.0% |
| !!! | TGGCTATTTGATAATTTTAC+TGG | - | chr3.3:87376746-87376765 | MS.gene014875:CDS | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | - | chr3.3:87376778-87376797 | MS.gene014875:CDS | 25.0% |
| AATAGTGAGGTTAAGTAAGT+AGG | + | chr3.3:87376282-87376301 | None:intergenic | 30.0% | |
| ACAGAATATTATTACAGCCT+TGG | - | chr3.3:87376175-87376194 | MS.gene014875:intron | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.3:87375347-87375366 | None:intergenic | 30.0% | |
| CAATGTCTATTTGGGTATTT+AGG | - | chr3.3:87375944-87375963 | MS.gene014875:intron | 30.0% | |
| GATGTGAACAATGTCTATTT+GGG | - | chr3.3:87375936-87375955 | MS.gene014875:intron | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | - | chr3.3:87376946-87376965 | MS.gene014875:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.3:87375783-87375802 | MS.gene014875:intron | 30.0% | |
| TATCAGTTGACAATAGTCAT+AGG | - | chr3.3:87376210-87376229 | MS.gene014875:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.3:87374939-87374958 | MS.gene014875:CDS | 30.0% | |
| TCATGGACAGTCTTAAATAA+AGG | + | chr3.3:87377238-87377257 | None:intergenic | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.3:87374910-87374929 | None:intergenic | 30.0% | |
| TGATGTGAACAATGTCTATT+TGG | - | chr3.3:87375935-87375954 | MS.gene014875:intron | 30.0% | |
| TGCAAACAGATTGAAGAATA+TGG | - | chr3.3:87376620-87376639 | MS.gene014875:CDS | 30.0% | |
| TTAGGTACAAGAAGCAAATT+GGG | - | chr3.3:87376802-87376821 | MS.gene014875:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.3:87377128-87377147 | MS.gene014875:CDS | 30.0% | |
| TTTAGGTACAAGAAGCAAAT+TGG | - | chr3.3:87376801-87376820 | MS.gene014875:CDS | 30.0% | |
| ! | AAGCTATCTTCTAGTTGTAT+CGG | + | chr3.3:87376357-87376376 | None:intergenic | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.3:87375154-87375173 | MS.gene014875:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.3:87377058-87377077 | MS.gene014875:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.3:87375437-87375456 | MS.gene014875:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.3:87375277-87375296 | MS.gene014875:CDS | 30.0% |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.3:87376853-87376872 | MS.gene014875:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.3:87375122-87375141 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr3.3:87377139-87377158 | MS.gene014875:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.3:87375312-87375331 | MS.gene014875:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.3:87375041-87375060 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.3:87375424-87375443 | MS.gene014875:intron | 35.0% | |
| GGTAACTATGCTTACTTGTA+AGG | + | chr3.3:87376427-87376446 | None:intergenic | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.3:87375147-87375166 | None:intergenic | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.3:87377243-87377262 | MS.gene014875:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.3:87375108-87375127 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.3:87375346-87375365 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.3:87374899-87374918 | MS.gene014875:CDS | 35.0% | |
| TGATACTGTACTAATCACCA+AGG | + | chr3.3:87376195-87376214 | None:intergenic | 35.0% | |
| TGGACAGTCTTAAATAAAGG+TGG | + | chr3.3:87377235-87377254 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.3:87375167-87375186 | MS.gene014875:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.3:87375004-87375023 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.3:87375442-87375461 | MS.gene014875:intron | 35.0% |
| ! | TATCTTCTAGTTGTATCGGT+GGG | + | chr3.3:87376353-87376372 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.3:87374950-87374969 | MS.gene014875:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.3:87375573-87375592 | MS.gene014875:intron | 35.0% |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.3:87377244-87377263 | MS.gene014875:CDS | 40.0% | |
| AATGCTCAAAGAATGCCCTA+AGG | + | chr3.3:87376041-87376060 | None:intergenic | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.3:87375017-87375036 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.3:87375539-87375558 | MS.gene014875:intron | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.3:87377013-87377032 | MS.gene014875:CDS | 40.0% | |
| ATGCTCAAAGAATGCCCTAA+GGG | + | chr3.3:87376040-87376059 | None:intergenic | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87377193-87377212 | MS.gene014875:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.3:87375166-87375185 | MS.gene014875:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.3:87375486-87375505 | MS.gene014875:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87377093-87377112 | MS.gene014875:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.3:87376953-87376972 | MS.gene014875:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.3:87376826-87376845 | MS.gene014875:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.3:87375387-87375406 | MS.gene014875:intron | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.3:87377255-87377274 | None:intergenic | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.3:87375415-87375434 | MS.gene014875:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.3:87375552-87375571 | MS.gene014875:intron | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.3:87376952-87376971 | MS.gene014875:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.3:87375315-87375334 | MS.gene014875:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.3:87375386-87375405 | MS.gene014875:intron | 40.0% | |
| TGGCGACAAAACAATTCAAG+TGG | + | chr3.3:87376133-87376152 | None:intergenic | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.3:87375168-87375187 | MS.gene014875:CDS | 40.0% | |
| ! | AGAATTAGCTTGAGCCACTT+CGG | + | chr3.3:87375599-87375618 | None:intergenic | 40.0% |
| ! | ATCTTCTAGTTGTATCGGTG+GGG | + | chr3.3:87376352-87376371 | None:intergenic | 40.0% |
| ! | CTATCTTCTAGTTGTATCGG+TGG | + | chr3.3:87376354-87376373 | None:intergenic | 40.0% |
| ! | CTTTGCATATAGCTCTGCTT+CGG | + | chr3.3:87376939-87376958 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr3.3:87375618-87375637 | MS.gene014875:intron | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr3.3:87375803-87375822 | None:intergenic | 40.0% |
| !! | GGAATAACTGAAGGTGTCAT+GGG | - | chr3.3:87377175-87377194 | MS.gene014875:CDS | 40.0% |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.3:87377267-87377286 | MS.gene014875:CDS | 45.0% | |
| ACCAACATAGTCACGCTCAA+TGG | - | chr3.3:87376001-87376020 | MS.gene014875:intron | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.3:87375065-87375084 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.3:87374997-87375016 | None:intergenic | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.3:87377268-87377287 | MS.gene014875:CDS | 45.0% | |
| CCAACATAGTCACGCTCAAT+GGG | - | chr3.3:87376002-87376021 | MS.gene014875:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.3:87375603-87375622 | MS.gene014875:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87376859-87376878 | MS.gene014875:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.3:87377096-87377115 | MS.gene014875:CDS | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | - | chr3.3:87377148-87377167 | MS.gene014875:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.3:87375366-87375385 | MS.gene014875:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.3:87377166-87377185 | MS.gene014875:CDS | 45.0% |
| ! | TCTTCTAGTTGTATCGGTGG+GGG | + | chr3.3:87376351-87376370 | None:intergenic | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | - | chr3.3:87377151-87377170 | MS.gene014875:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | - | chr3.3:87377152-87377171 | MS.gene014875:CDS | 45.0% |
| !! | GGGAATAACTGAAGGTGTCA+TGG | - | chr3.3:87377174-87377193 | MS.gene014875:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | - | chr3.3:87377153-87377172 | MS.gene014875:CDS | 45.0% |
| !! | CAAATTAATATATATTATAT+AGG | - | chr3.3:87375875-87375894 | MS.gene014875:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.3:87375052-87375071 | None:intergenic | 50.0% | |
| ACATAGTCACGCTCAATGGG+TGG | - | chr3.3:87376005-87376024 | MS.gene014875:intron | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.3:87374886-87374905 | None:intergenic | 50.0% | |
| CCCATTGAGCGTGACTATGT+TGG | + | chr3.3:87376005-87376024 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.3:87375694-87375713 | MS.gene014875:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.3:87375085-87375104 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.3:87375215-87375234 | None:intergenic | 50.0% | |
| GAATCAAAGAGAGGCCGAAG+TGG | - | chr3.3:87375582-87375601 | MS.gene014875:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.3:87375063-87375082 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.3:87375064-87375083 | None:intergenic | 50.0% | |
| GGTGGTAACAAGTGCCCTTA+GGG | - | chr3.3:87376023-87376042 | MS.gene014875:intron | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | - | chr3.3:87375508-87375527 | MS.gene014875:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.3:87375136-87375155 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.3:87375623-87375642 | MS.gene014875:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.3:87375217-87375236 | MS.gene014875:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | - | chr3.3:87377154-87377173 | MS.gene014875:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr3.3:87375678-87375697 | MS.gene014875:intron | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.3:87374971-87374990 | None:intergenic | 55.0% | |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.3:87377277-87377296 | None:intergenic | 55.0% | |
| ACGCTCCTTGAGCATTCCCA+AGG | + | chr3.3:87376988-87377007 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.3:87375201-87375220 | MS.gene014875:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | - | chr3.3:87375669-87375688 | MS.gene014875:intron | 55.0% | |
| AGTTGCAAGGTGAGGTCGAG+AGG | - | chr3.3:87375707-87375726 | MS.gene014875:intron | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.3:87377103-87377122 | MS.gene014875:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.3:87374972-87374991 | None:intergenic | 55.0% | |
| CAGAGGGAACTGTGACCCTT+GGG | - | chr3.3:87376969-87376988 | MS.gene014875:CDS | 55.0% | |
| CGCTCCTTGAGCATTCCCAA+GGG | + | chr3.3:87376987-87377006 | None:intergenic | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.3:87377263-87377282 | MS.gene014875:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.3:87375058-87375077 | MS.gene014875:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr3.3:87375699-87375718 | MS.gene014875:intron | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | - | chr3.3:87375663-87375682 | MS.gene014875:intron | 55.0% | |
| GGGTGGTAACAAGTGCCCTT+AGG | - | chr3.3:87376022-87376041 | MS.gene014875:intron | 55.0% | |
| GTGACCCTTGGGAATGCTCA+AGG | - | chr3.3:87376980-87376999 | MS.gene014875:CDS | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.3:87374987-87375006 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.3:87375207-87375226 | MS.gene014875:CDS | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.3:87375325-87375344 | MS.gene014875:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr3.3:87375677-87375696 | MS.gene014875:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr3.3:87375630-87375649 | MS.gene014875:intron | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | - | chr3.3:87376880-87376899 | MS.gene014875:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.3:87375078-87375097 | MS.gene014875:CDS | 55.0% |
| !! | CGGTGGGGGTTCTGACTTTT+GGG | + | chr3.3:87376337-87376356 | None:intergenic | 55.0% |
| !! | TCGGTGGGGGTTCTGACTTT+TGG | + | chr3.3:87376338-87376357 | None:intergenic | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.3:87375525-87375544 | MS.gene014875:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.3:87374982-87375001 | MS.gene014875:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.3:87375204-87375223 | MS.gene014875:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.3:87374970-87374989 | MS.gene014875:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.3:87375522-87375541 | MS.gene014875:intron | 60.0% | |
| GCAGAGGGAACTGTGACCCT+TGG | - | chr3.3:87376968-87376987 | MS.gene014875:CDS | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.3:87375514-87375533 | MS.gene014875:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.3:87375526-87375545 | MS.gene014875:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.3:87377280-87377299 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | - | chr3.3:87375654-87375673 | MS.gene014875:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.3:87374981-87375000 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.3:87375513-87375532 | MS.gene014875:intron | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr3.3:87375633-87375652 | MS.gene014875:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.3:87377113-87377132 | None:intergenic | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr3.3:87375650-87375669 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr3.3:87375642-87375661 | MS.gene014875:intron | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr3.3:87375639-87375658 | MS.gene014875:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87374872 | 87377315 | 87374872 | ID=MS.gene014875 |
| chr3.3 | mRNA | 87374872 | 87377315 | 87374872 | ID=MS.gene014875.t1;Parent=MS.gene014875 |
| chr3.3 | exon | 87376383 | 87377315 | 87376383 | ID=MS.gene014875.t1.exon1;Parent=MS.gene014875.t1 |
| chr3.3 | CDS | 87376383 | 87377315 | 87376383 | ID=cds.MS.gene014875.t1;Parent=MS.gene014875.t1 |
| chr3.3 | exon | 87374872 | 87375381 | 87374872 | ID=MS.gene014875.t1.exon2;Parent=MS.gene014875.t1 |
| chr3.3 | CDS | 87374872 | 87375381 | 87374872 | ID=cds.MS.gene014875.t1;Parent=MS.gene014875.t1 |
| Gene Sequence |
| Protein sequence |
