Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014870.t1 | XP_003603337.2 | 93.1 | 478 | 33 | 0 | 1 | 478 | 1 | 478 | 1.10E-178 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014870.t1 | D2XNQ8 | 93.1 | 478 | 33 | 0 | 1 | 478 | 1 | 478 | 2.7e-181 | 636.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014870.t1 | G7JAE9 | 93.1 | 478 | 33 | 0 | 1 | 478 | 1 | 478 | 8.0e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014870.t1 | MTR_3g106485 | 96.444 | 478 | 13 | 2 | 1 | 478 | 1 | 474 | 0.0 | 933 |
| MS.gene014870.t1 | MTR_3g106480 | 94.770 | 478 | 25 | 0 | 1 | 478 | 1 | 478 | 0.0 | 929 |
| MS.gene014870.t1 | MTR_3g106420 | 93.933 | 478 | 29 | 0 | 1 | 478 | 3 | 480 | 0.0 | 895 |
| MS.gene014870.t1 | MTR_1g115145 | 89.353 | 479 | 44 | 3 | 1 | 478 | 1 | 473 | 0.0 | 852 |
| MS.gene014870.t1 | MTR_1g073400 | 91.213 | 478 | 38 | 1 | 1 | 478 | 1 | 474 | 0.0 | 850 |
| MS.gene014870.t1 | MTR_1g083190 | 90.377 | 478 | 38 | 1 | 1 | 478 | 3 | 472 | 0.0 | 847 |
| MS.gene014870.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 838 |
| MS.gene014870.t1 | MTR_3g106430 | 91.195 | 477 | 38 | 2 | 1 | 477 | 1 | 473 | 0.0 | 834 |
| MS.gene014870.t1 | MTR_3g106470 | 80.922 | 477 | 35 | 2 | 1 | 477 | 32 | 452 | 0.0 | 734 |
| MS.gene014870.t1 | MTR_8g063830 | 80.000 | 465 | 52 | 5 | 1 | 464 | 1 | 425 | 0.0 | 671 |
| MS.gene014870.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 5.94e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014870.t1 | AT5G25260 | 73.362 | 473 | 114 | 2 | 1 | 473 | 1 | 461 | 0.0 | 725 |
| MS.gene014870.t1 | AT5G25250 | 73.573 | 473 | 111 | 2 | 1 | 473 | 1 | 459 | 0.0 | 718 |
| MS.gene014870.t1 | AT5G64870 | 70.339 | 472 | 129 | 1 | 2 | 473 | 3 | 463 | 0.0 | 657 |
Find 118 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 3.3:-87411136 | MS.gene014870:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.3:-87410807 | MS.gene014870:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 3.3:-87409331 | MS.gene014870:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.3:-87411060 | MS.gene014870:CDS |
| TTAGTCCAAATGTTAATCTT+AGG | 0.325712 | 3.3:+87409253 | None:intergenic |
| TGTAGGTGCAAGAGGCTAAC+TGG | 0.327485 | 3.3:-87409585 | MS.gene014870:intron |
| CTCCCTGCCGTCTTCACAAT+TGG | 0.332748 | 3.3:-87411426 | MS.gene014870:CDS |
| CAATGCTAATGTTAAGCAAT+TGG | 0.346020 | 3.3:-87411172 | MS.gene014870:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.349522 | 3.3:+87411335 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.3:-87409119 | MS.gene014870:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.3:-87411207 | MS.gene014870:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.3:-87411047 | MS.gene014870:CDS |
| AAGATTAACATTTGGACTAA+TGG | 0.359631 | 3.3:-87409250 | MS.gene014870:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.3:-87410854 | MS.gene014870:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.373519 | 3.3:-87411585 | MS.gene014870:CDS |
| CGTATTTGAGGAGACTTTCA+TGG | 0.394725 | 3.3:+87411388 | None:intergenic |
| TTGAGCCTAAGATTAACATT+TGG | 0.412978 | 3.3:-87409258 | MS.gene014870:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.3:-87410845 | MS.gene014870:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 3.3:-87410959 | MS.gene014870:CDS |
| TTTCATACCCATGGCACCTT+CGG | 0.427051 | 3.3:+87409204 | None:intergenic |
| ATCATGAGGTGAAATAAGTT+TGG | 0.429079 | 3.3:+87411365 | None:intergenic |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.3:-87409235 | MS.gene014870:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.3:-87411330 | MS.gene014870:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 3.3:-87410905 | MS.gene014870:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.3:-87409533 | MS.gene014870:CDS |
| AAATAAGTTTGGCGTATTTG+AGG | 0.468280 | 3.3:+87411376 | None:intergenic |
| GGGAATAACCGAAGGTGCCA+TGG | 0.469319 | 3.3:-87409212 | MS.gene014870:CDS |
| TGCTTCCATGACCATGGAGG+AGG | 0.479699 | 3.3:-87411277 | MS.gene014870:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.3:-87411046 | MS.gene014870:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 3.3:-87411135 | MS.gene014870:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 3.3:-87411620 | None:intergenic |
| CTTTGCGTATAGCTCTGCTT+CGG | 0.490908 | 3.3:+87409450 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.3:-87409142 | MS.gene014870:CDS |
| GGACCAATTGTGAAGACGGC+AGG | 0.502590 | 3.3:+87411423 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 3.3:-87409123 | MS.gene014870:CDS |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 3.3:+87411272 | None:intergenic |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 3.3:-87409351 | MS.gene014870:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.3:-87410842 | MS.gene014870:CDS |
| GGCTGAAATCGAGGCGAAGA+AGG | 0.512238 | 3.3:-87410821 | MS.gene014870:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.3:-87409118 | MS.gene014870:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.3:+87409134 | None:intergenic |
| GAAGACCGTGCATGATTGAC+CGG | 0.521386 | 3.3:+87411515 | None:intergenic |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.3:-87410861 | MS.gene014870:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.3:-87411159 | MS.gene014870:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.3:-87410806 | MS.gene014870:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.3:-87410869 | MS.gene014870:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.3:+87409195 | None:intergenic |
| CTCAAGTCCACGTACCGCCT+CGG | 0.541020 | 3.3:+87409276 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 3.3:-87410790 | MS.gene014870:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.3:-87410881 | MS.gene014870:CDS |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.3:-87409418 | MS.gene014870:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 3.3:-87410976 | MS.gene014870:CDS |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.3:+87409109 | None:intergenic |
| GGAATAACCGAAGGTGCCAT+GGG | 0.551992 | 3.3:-87409211 | MS.gene014870:CDS |
| GTAGGTGCAAGAGGCTAACT+GGG | 0.558157 | 3.3:-87409584 | MS.gene014870:intron |
| TATCTTGCGATAACTGGTGC+CGG | 0.558862 | 3.3:-87411579 | MS.gene014870:CDS |
| TGCTAATGTTAAGCAATTGG+TGG | 0.560962 | 3.3:-87411169 | MS.gene014870:CDS |
| CACGGTCTTCGACCTCTCAC+CGG | 0.561698 | 3.3:-87411502 | MS.gene014870:CDS |
| GAATCAGAGAGAGGCTGAGG+TGG | 0.562176 | 3.3:-87410902 | MS.gene014870:CDS |
| CTGGATGTTGTAGGTGCAAG+AGG | 0.562730 | 3.3:-87409593 | MS.gene014870:intron |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 3.3:-87411318 | MS.gene014870:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.3:+87411435 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.3:-87409373 | MS.gene014870:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 3.3:+87411483 | None:intergenic |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 3.3:+87411266 | None:intergenic |
| CCTCGCTGCTTCCATGACCA+TGG | 0.573283 | 3.3:-87411283 | MS.gene014870:CDS |
| AATCGAGGCGAAGAAGGCCG+TGG | 0.573743 | 3.3:-87410815 | MS.gene014870:CDS |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 3.3:+87411490 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+TGG | 0.575987 | 3.3:-87409283 | MS.gene014870:CDS |
| ATTAACATTTGGACTAATGG+TGG | 0.579465 | 3.3:-87409247 | MS.gene014870:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87409193 | MS.gene014870:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.3:-87409406 | MS.gene014870:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 3.3:-87411545 | MS.gene014870:CDS |
| GGCTCAGGTGGCTGAAATCG+AGG | 0.586726 | 3.3:-87410830 | MS.gene014870:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.3:-87410981 | MS.gene014870:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.3:-87409234 | MS.gene014870:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 3.3:+87411419 | None:intergenic |
| AAGACCGTGCATGATTGACC+GGG | 0.595662 | 3.3:+87411516 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.3:-87409417 | MS.gene014870:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 3.3:-87409350 | MS.gene014870:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.3:-87409527 | MS.gene014870:CDS |
| GACCAATTGTGAAGACGGCA+GGG | 0.602478 | 3.3:+87411424 | None:intergenic |
| GCTCATAGCTTGAACTTCGA+AGG | 0.603872 | 3.3:+87411470 | None:intergenic |
| TTTCCCCGGTCAATCATGCA+CGG | 0.608303 | 3.3:-87411520 | MS.gene014870:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.3:-87410777 | MS.gene014870:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.3:-87411069 | MS.gene014870:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.3:+87409151 | None:intergenic |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.3:-87411118 | MS.gene014870:CDS |
| CGCTGCTTCCATGACCATGG+AGG | 0.624081 | 3.3:-87411280 | MS.gene014870:CDS |
| GGAAGCAGCGAATCAAGCTA+AGG | 0.627544 | 3.3:-87411097 | MS.gene014870:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 3.3:-87411317 | MS.gene014870:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.3:-87409232 | MS.gene014870:CDS |
| GATAACTGGTGCCGGAATCG+AGG | 0.630242 | 3.3:-87411571 | MS.gene014870:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.3:-87411042 | MS.gene014870:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.3:+87411436 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.3:-87410980 | MS.gene014870:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.634084 | 3.3:+87410798 | None:intergenic |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.3:-87409233 | MS.gene014870:CDS |
| GTTCATTAACGTGATTGGAG+TGG | 0.637668 | 3.3:+87411340 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 3.3:-87411619 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87409293 | MS.gene014870:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 3.3:-87410945 | MS.gene014870:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 3.3:-87410701 | MS.gene014870:intron |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.3:+87409154 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.3:-87410998 | MS.gene014870:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.3:-87410866 | MS.gene014870:CDS |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 3.3:+87411141 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.3:-87409328 | MS.gene014870:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.3:-87409290 | MS.gene014870:CDS |
| CTTTCATGGTGGTCAACACG+AGG | 0.664330 | 3.3:+87411402 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.3:+87409112 | None:intergenic |
| TGATTGGAGTGGCGATCATG+AGG | 0.675682 | 3.3:+87411351 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 3.3:-87410958 | MS.gene014870:CDS |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 3.3:-87411316 | MS.gene014870:CDS |
| ATTTGAGGAGACTTTCATGG+TGG | 0.703229 | 3.3:+87411391 | None:intergenic |
| AGACCGTGCATGATTGACCG+GGG | 0.723407 | 3.3:+87411517 | None:intergenic |
| CCATGGTCATGGAAGCAGCG+AGG | 0.728643 | 3.3:+87411283 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.3:-87410851 | MS.gene014870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTAAGATTATAACAT+GGG | + | chr3.3:87410339-87410358 | None:intergenic | 10.0% |
| !! | CATTATAAAACTAAATCATT+TGG | - | chr3.3:87410830-87410849 | MS.gene014870:CDS | 15.0% |
| !!! | ATATTTTAAAGGCTAAATAA+AGG | - | chr3.3:87410287-87410306 | MS.gene014870:intron | 15.0% |
| !!! | GTATATTTAAGATTATAACA+TGG | + | chr3.3:87410340-87410359 | None:intergenic | 15.0% |
| !! | ATATGTACAGTTTATTTACA+AGG | + | chr3.3:87410710-87410729 | None:intergenic | 20.0% |
| !! | ATATTTACAAAGATCATAGA+TGG | - | chr3.3:87410514-87410533 | MS.gene014870:intron | 20.0% |
| !! | ATTAGAAAAAGTTTGACATA+CGG | - | chr3.3:87410952-87410971 | MS.gene014870:CDS | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | - | chr3.3:87411139-87411158 | MS.gene014870:CDS | 20.0% |
| !! | ATTCAACTGATTATGTTATA+TGG | - | chr3.3:87410363-87410382 | MS.gene014870:intron | 20.0% |
| !! | CATACATTGATATAAAAAGA+TGG | - | chr3.3:87410733-87410752 | MS.gene014870:CDS | 20.0% |
| !! | GACAAATTAAACATTATACA+AGG | - | chr3.3:87410639-87410658 | MS.gene014870:intron | 20.0% |
| !! | TATTTACAAAGATCATAGAT+GGG | - | chr3.3:87410515-87410534 | MS.gene014870:intron | 20.0% |
| !! | TCTCATTATAGTTTAGTAAA+AGG | + | chr3.3:87410568-87410587 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTTTAAGTGC+TGG | - | chr3.3:87411075-87411094 | MS.gene014870:CDS | 20.0% |
| !!! | ATAATGTTTAATTTGTCGAT+TGG | + | chr3.3:87410636-87410655 | None:intergenic | 20.0% |
| !!! | TAATGTTTAATTTGTCGATT+GGG | + | chr3.3:87410635-87410654 | None:intergenic | 20.0% |
| ! | AAGAATAAGTTATAGTTGCA+TGG | + | chr3.3:87410029-87410048 | None:intergenic | 25.0% |
| ! | AAGATTAACATTTGGACTAA+TGG | - | chr3.3:87411449-87411468 | MS.gene014870:CDS | 25.0% |
| ! | AGCAATAGAAGATTAATTCA+GGG | - | chr3.3:87410254-87410273 | MS.gene014870:intron | 25.0% |
| ! | ATAACAAGTATGTTGTATAC+GGG | - | chr3.3:87411039-87411058 | MS.gene014870:CDS | 25.0% |
| ! | CATAACAAGTATGTTGTATA+CGG | - | chr3.3:87411038-87411057 | MS.gene014870:CDS | 25.0% |
| ! | TAATATCTATTGAGACGTTT+AGG | - | chr3.3:87410157-87410176 | MS.gene014870:intron | 25.0% |
| ! | TATTTACAAGGTCTTAACTA+CGG | + | chr3.3:87410698-87410717 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATGTTAATCTT+AGG | + | chr3.3:87411449-87411468 | None:intergenic | 25.0% |
| ! | TTCTAATCGAAACAAAACAT+AGG | + | chr3.3:87410939-87410958 | None:intergenic | 25.0% |
| !! | GAGTTGGTTAAATTTGAAAA+GGG | + | chr3.3:87410195-87410214 | None:intergenic | 25.0% |
| !! | GTAAAAGTACACAACTAATT+TGG | + | chr3.3:87410893-87410912 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | - | chr3.3:87410449-87410468 | MS.gene014870:intron | 25.0% |
| !! | TTGATTGTTTGTTTCTCAAA+AGG | - | chr3.3:87410601-87410620 | MS.gene014870:intron | 25.0% |
| !!! | AATGTTTAATTTGTCGATTG+GGG | + | chr3.3:87410634-87410653 | None:intergenic | 25.0% |
| !!! | CACTGTAATTACAGTTTTTT+TGG | - | chr3.3:87410117-87410136 | MS.gene014870:intron | 25.0% |
| !!! | TGAGTTGGTTAAATTTGAAA+AGG | + | chr3.3:87410196-87410215 | None:intergenic | 25.0% |
| AAATAAGTTTGGCGTATTTG+AGG | + | chr3.3:87409326-87409345 | None:intergenic | 30.0% | |
| AGTTTAGTAAAAGGCAAAGT+AGG | + | chr3.3:87410559-87410578 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | + | chr3.3:87409337-87409356 | None:intergenic | 30.0% | |
| ATCTGACTAAACTTTCATCA+TGG | - | chr3.3:87410763-87410782 | MS.gene014870:CDS | 30.0% | |
| ATTAACATTTGGACTAATGG+TGG | - | chr3.3:87411452-87411471 | MS.gene014870:CDS | 30.0% | |
| CAATGCTAATGTTAAGCAAT+TGG | - | chr3.3:87409527-87409546 | MS.gene014870:CDS | 30.0% | |
| GAGCAATAGAAGATTAATTC+AGG | - | chr3.3:87410253-87410272 | MS.gene014870:intron | 30.0% | |
| GTTCAATATACAATAGTCCT+AGG | - | chr3.3:87410479-87410498 | MS.gene014870:intron | 30.0% | |
| GTTTAGTAAAAGGCAAAGTA+GGG | + | chr3.3:87410558-87410577 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | - | chr3.3:87409154-87409173 | MS.gene014870:CDS | 30.0% | |
| TATATTGAACCAAATCACCA+AGG | + | chr3.3:87410469-87410488 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAACATT+TGG | - | chr3.3:87411441-87411460 | MS.gene014870:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.3:87411368-87411387 | MS.gene014870:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.3:87411371-87411390 | MS.gene014870:CDS | 30.0% |
| !! | ATGTTTAATTTGTCGATTGG+GGG | + | chr3.3:87410633-87410652 | None:intergenic | 30.0% |
| !! | ATTTTACAACCTTGGTGATT+TGG | - | chr3.3:87410457-87410476 | MS.gene014870:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.3:87409492-87409511 | MS.gene014870:CDS | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | - | chr3.3:87409653-87409672 | MS.gene014870:intron | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | - | chr3.3:87411349-87411368 | MS.gene014870:CDS | 35.0% | |
| AACGAGTTCATTAACGTGAT+TGG | + | chr3.3:87409367-87409386 | None:intergenic | 35.0% | |
| AACTATAATGAGATCGCAGT+TGG | - | chr3.3:87410575-87410594 | MS.gene014870:intron | 35.0% | |
| AAGTAGCAAGATGCTAATTG+GGG | - | chr3.3:87410664-87410683 | MS.gene014870:intron | 35.0% | |
| ACTATAATGAGATCGCAGTT+GGG | - | chr3.3:87410576-87410595 | MS.gene014870:intron | 35.0% | |
| AGAAGTAGCAAGATGCTAAT+TGG | - | chr3.3:87410662-87410681 | MS.gene014870:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.3:87411166-87411185 | MS.gene014870:CDS | 35.0% | |
| ATCTATTGAGACGTTTAGGT+TGG | - | chr3.3:87410161-87410180 | MS.gene014870:intron | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | - | chr3.3:87409564-87409583 | MS.gene014870:CDS | 35.0% | |
| GAAAAAGTTTGACATACGGT+AGG | - | chr3.3:87410956-87410975 | MS.gene014870:CDS | 35.0% | |
| GAAGTAGCAAGATGCTAATT+GGG | - | chr3.3:87410663-87410682 | MS.gene014870:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.3:87409639-87409658 | MS.gene014870:intron | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr3.3:87411259-87411278 | MS.gene014870:CDS | 35.0% | |
| GTTGAAATTCTGGATGTTGT+AGG | - | chr3.3:87411097-87411116 | MS.gene014870:CDS | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | - | chr3.3:87409998-87410017 | MS.gene014870:intron | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | - | chr3.3:87409563-87409582 | MS.gene014870:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | - | chr3.3:87409114-87409133 | MS.gene014870:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.3:87411551-87411570 | None:intergenic | 35.0% | |
| TGCTAATGTTAAGCAATTGG+TGG | - | chr3.3:87409530-87409549 | MS.gene014870:CDS | 35.0% | |
| TTTGACATACGGTAGGTAAA+TGG | - | chr3.3:87410963-87410982 | MS.gene014870:CDS | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.3:87411464-87411483 | MS.gene014870:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.3:87411465-87411484 | MS.gene014870:CDS | 35.0% |
| ! | GAAGTATTACTCTTGTTGCT+TGG | + | chr3.3:87410089-87410108 | None:intergenic | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.3:87411466-87411485 | MS.gene014870:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.3:87411609-87411628 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | - | chr3.3:87409788-87409807 | MS.gene014870:intron | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.3:87409652-87409671 | MS.gene014870:intron | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | - | chr3.3:87411087-87411106 | MS.gene014870:CDS | 35.0% |
| AATGACTCATGTCACTGAGT+TGG | + | chr3.3:87410211-87410230 | None:intergenic | 40.0% | |
| AGAAGCAGGGAATTAAAGTG+AGG | - | chr3.3:87409754-87409773 | MS.gene014870:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.3:87411507-87411526 | None:intergenic | 40.0% | |
| AGGTCTTAACTACGGATTTG+CGG | + | chr3.3:87410690-87410709 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.3:87411326-87411345 | MS.gene014870:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.3:87409922-87409941 | MS.gene014870:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87411506-87411525 | MS.gene014870:CDS | 40.0% | |
| ATTTGAGGAGACTTTCATGG+TGG | + | chr3.3:87409311-87409330 | None:intergenic | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.3:87411267-87411286 | MS.gene014870:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr3.3:87409369-87409388 | MS.gene014870:CDS | 40.0% | |
| CGTATTTGAGGAGACTTTCA+TGG | + | chr3.3:87409314-87409333 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.3:87409701-87409720 | MS.gene014870:intron | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | - | chr3.3:87411348-87411367 | MS.gene014870:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87411406-87411425 | MS.gene014870:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.3:87411266-87411285 | MS.gene014870:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.3:87409630-87409649 | MS.gene014870:intron | 40.0% | |
| GTTCATTAACGTGATTGGAG+TGG | + | chr3.3:87409362-87409381 | None:intergenic | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | + | chr3.3:87409561-87409580 | None:intergenic | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | - | chr3.3:87409382-87409401 | MS.gene014870:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.3:87411548-87411567 | None:intergenic | 40.0% | |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.3:87411467-87411486 | MS.gene014870:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr3.3:87409219-87409238 | None:intergenic | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | + | chr3.3:87410018-87410037 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | + | chr3.3:87409101-87409120 | None:intergenic | 40.0% |
| ! | CATCAATTTTCGCTGCATTC+TGG | + | chr3.3:87409692-87409711 | None:intergenic | 40.0% |
| ! | GTTTGTTTCTCAAAAGGCAG+AGG | - | chr3.3:87410607-87410626 | MS.gene014870:intron | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.3:87409830-87409849 | MS.gene014870:intron | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+CGG | - | chr3.3:87409165-87409184 | MS.gene014870:CDS | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | - | chr3.3:87409657-87409676 | MS.gene014870:intron | 40.0% |
| !! | GAGTTTTATGTCCTCGATTC+CGG | + | chr3.3:87409142-87409161 | None:intergenic | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr3.3:87411557-87411576 | MS.gene014870:CDS | 45.0% | |
| AATATGCAGTGCACAGACCT+AGG | + | chr3.3:87410499-87410518 | None:intergenic | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr3.3:87409283-87409302 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.3:87411265-87411284 | MS.gene014870:CDS | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | - | chr3.3:87409383-87409402 | MS.gene014870:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr3.3:87409909-87409928 | MS.gene014870:intron | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr3.3:87409381-87409400 | MS.gene014870:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr3.3:87409719-87409738 | MS.gene014870:intron | 45.0% | |
| GCTCATAGCTTGAACTTCGA+AGG | + | chr3.3:87409232-87409251 | None:intergenic | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.3:87409818-87409837 | MS.gene014870:intron | 45.0% | |
| TATCTTGCGATAACTGGTGC+CGG | - | chr3.3:87409120-87409139 | MS.gene014870:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87411172-87411191 | MS.gene014870:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.3:87411409-87411428 | MS.gene014870:CDS | 45.0% | |
| TTTCATACCCATGGCACCTT+CGG | + | chr3.3:87411498-87411517 | None:intergenic | 45.0% | |
| ! | AATAGTGGGGGAATAACCGA+AGG | - | chr3.3:87411479-87411498 | MS.gene014870:CDS | 45.0% |
| ! | CTTTGCGTATAGCTCTGCTT+CGG | + | chr3.3:87411252-87411271 | None:intergenic | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.3:87409833-87409852 | MS.gene014870:intron | 45.0% |
| !! | AGACGTTTAGGTTGGACTCT+TGG | - | chr3.3:87410169-87410188 | MS.gene014870:intron | 45.0% |
| !!! | AAATTTTTAAAAAAATTTAG+CGG | + | chr3.3:87410431-87410450 | None:intergenic | 5.0% |
| !!! | GATATTTTTTAATATTTTAA+AGG | - | chr3.3:87410276-87410295 | MS.gene014870:intron | 5.0% |
| AAGACCGTGCATGATTGACC+GGG | + | chr3.3:87409186-87409205 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr3.3:87409212-87409231 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.3:87411581-87411600 | MS.gene014870:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.3:87411282-87411301 | MS.gene014870:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr3.3:87409718-87409737 | MS.gene014870:intron | 50.0% | |
| CTGGATGTTGTAGGTGCAAG+AGG | - | chr3.3:87411106-87411125 | MS.gene014870:CDS | 50.0% | |
| CTTTCATGGTGGTCAACACG+AGG | + | chr3.3:87409300-87409319 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | + | chr3.3:87409430-87409449 | None:intergenic | 50.0% | |
| GAAGACCGTGCATGATTGAC+CGG | + | chr3.3:87409187-87409206 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACGGCA+GGG | + | chr3.3:87409278-87409297 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr3.3:87411568-87411587 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | - | chr3.3:87409741-87409760 | MS.gene014870:intron | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+AGG | - | chr3.3:87409602-87409621 | MS.gene014870:intron | 50.0% | |
| GTAGGTGCAAGAGGCTAACT+GGG | - | chr3.3:87411115-87411134 | MS.gene014870:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.3:87411293-87411312 | MS.gene014870:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | - | chr3.3:87409794-87409813 | MS.gene014870:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+AGG | + | chr3.3:87409351-87409370 | None:intergenic | 50.0% | |
| TGTAGGTGCAAGAGGCTAAC+TGG | - | chr3.3:87411114-87411133 | MS.gene014870:CDS | 50.0% | |
| TTTCCCCGGTCAATCATGCA+CGG | - | chr3.3:87409179-87409198 | MS.gene014870:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr3.3:87409540-87409559 | MS.gene014870:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | - | chr3.3:87409432-87409451 | MS.gene014870:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | - | chr3.3:87411193-87411212 | MS.gene014870:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | + | chr3.3:87409436-87409455 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | - | chr3.3:87409581-87409600 | MS.gene014870:CDS | 50.0% |
| !! | GGAATAACCGAAGGTGCCAT+GGG | - | chr3.3:87411488-87411507 | MS.gene014870:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | + | chr3.3:87409267-87409286 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.3:87411590-87411609 | None:intergenic | 55.0% | |
| AGACCGTGCATGATTGACCG+GGG | + | chr3.3:87409185-87409204 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | + | chr3.3:87409266-87409285 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+TGG | - | chr3.3:87411416-87411435 | MS.gene014870:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.3:87411580-87411599 | MS.gene014870:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.3:87409904-87409923 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+TGG | - | chr3.3:87409273-87409292 | MS.gene014870:CDS | 55.0% | |
| GAATCAGAGAGAGGCTGAGG+TGG | - | chr3.3:87409797-87409816 | MS.gene014870:intron | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.3:87411281-87411300 | MS.gene014870:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr3.3:87409279-87409298 | None:intergenic | 55.0% | |
| GGCTGAAATCGAGGCGAAGA+AGG | - | chr3.3:87409878-87409897 | MS.gene014870:intron | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | - | chr3.3:87409740-87409759 | MS.gene014870:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.3:87411593-87411612 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.3:87409723-87409742 | MS.gene014870:intron | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | - | chr3.3:87409422-87409441 | MS.gene014870:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.3:87409838-87409857 | MS.gene014870:intron | 55.0% | |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.3:87409845-87409864 | MS.gene014870:intron | 55.0% |
| ! | GATAACTGGTGCCGGAATCG+AGG | - | chr3.3:87409128-87409147 | MS.gene014870:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.3:87409893-87409912 | MS.gene014870:intron | 55.0% |
| !! | GGGAATAACCGAAGGTGCCA+TGG | - | chr3.3:87411487-87411506 | MS.gene014870:CDS | 55.0% |
| AATCGAGGCGAAGAAGGCCG+TGG | - | chr3.3:87409884-87409903 | MS.gene014870:intron | 60.0% | |
| CACGGTCTTCGACCTCTCAC+CGG | - | chr3.3:87409197-87409216 | MS.gene014870:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.3:87411576-87411595 | MS.gene014870:CDS | 60.0% | |
| CCATGGTCATGGAAGCAGCG+AGG | + | chr3.3:87409419-87409438 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACCA+TGG | - | chr3.3:87409416-87409435 | MS.gene014870:CDS | 60.0% | |
| CGCTGCTTCCATGACCATGG+AGG | - | chr3.3:87409419-87409438 | MS.gene014870:CDS | 60.0% | |
| CTCAAGTCCACGTACCGCCT+CGG | + | chr3.3:87411426-87411445 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAATCG+AGG | - | chr3.3:87409869-87409888 | MS.gene014870:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.3:87409857-87409876 | MS.gene014870:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.3:87409892-87409911 | MS.gene014870:intron | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.3:87409848-87409867 | MS.gene014870:intron | 60.0% |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.3:87409854-87409873 | MS.gene014870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87409093 | 87411628 | 87409093 | ID=MS.gene014870 |
| chr3.3 | mRNA | 87409093 | 87411628 | 87409093 | ID=MS.gene014870.t1;Parent=MS.gene014870 |
| chr3.3 | exon | 87410702 | 87411628 | 87410702 | ID=MS.gene014870.t1.exon1;Parent=MS.gene014870.t1 |
| chr3.3 | CDS | 87410702 | 87411628 | 87410702 | ID=cds.MS.gene014870.t1;Parent=MS.gene014870.t1 |
| chr3.3 | exon | 87409093 | 87409602 | 87409093 | ID=MS.gene014870.t1.exon2;Parent=MS.gene014870.t1 |
| chr3.3 | CDS | 87409093 | 87409602 | 87409093 | ID=cds.MS.gene014870.t1;Parent=MS.gene014870.t1 |
| Gene Sequence |
| Protein sequence |
