Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80215.t1 | XP_003603332.1 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 6.70E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80215.t1 | D2XNQ9 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 1.6e-194 | 680.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80215.t1 | G7JAE4 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 4.9e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80215.t1 | MTR_3g106420 | 97.500 | 480 | 12 | 0 | 1 | 480 | 1 | 480 | 0.0 | 954 |
| MS.gene80215.t1 | MTR_3g106480 | 93.305 | 478 | 32 | 0 | 3 | 480 | 1 | 478 | 0.0 | 912 |
| MS.gene80215.t1 | MTR_3g106485 | 94.561 | 478 | 22 | 2 | 3 | 480 | 1 | 474 | 0.0 | 887 |
| MS.gene80215.t1 | MTR_1g083190 | 93.542 | 480 | 23 | 1 | 1 | 480 | 1 | 472 | 0.0 | 881 |
| MS.gene80215.t1 | MTR_1g073400 | 91.423 | 478 | 37 | 1 | 3 | 480 | 1 | 474 | 0.0 | 844 |
| MS.gene80215.t1 | MTR_1g115145 | 89.353 | 479 | 44 | 3 | 3 | 480 | 1 | 473 | 0.0 | 844 |
| MS.gene80215.t1 | MTR_1g071130 | 86.192 | 478 | 37 | 2 | 3 | 480 | 1 | 449 | 0.0 | 835 |
| MS.gene80215.t1 | MTR_3g106430 | 91.824 | 477 | 35 | 2 | 3 | 479 | 1 | 473 | 0.0 | 834 |
| MS.gene80215.t1 | MTR_3g106470 | 83.229 | 477 | 24 | 2 | 3 | 479 | 32 | 452 | 0.0 | 756 |
| MS.gene80215.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 3 | 466 | 1 | 425 | 0.0 | 672 |
| MS.gene80215.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.35e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80215.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 3 | 475 | 1 | 461 | 0.0 | 726 |
| MS.gene80215.t1 | AT5G25250 | 74.207 | 473 | 108 | 2 | 3 | 475 | 1 | 459 | 0.0 | 717 |
| MS.gene80215.t1 | AT5G64870 | 70.551 | 472 | 128 | 1 | 4 | 475 | 3 | 463 | 0.0 | 654 |
Find 119 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.4:-92842541 | MS.gene80215:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.4:-92840921 | MS.gene80215:CDS |
| CAAAGAAGGCCGTGGCTCTA+AGG | 0.288894 | 3.4:-92842212 | MS.gene80215:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.4:-92842540 | MS.gene80215:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.4:+92842740 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.4:-92842465 | MS.gene80215:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.4:-92840994 | MS.gene80215:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.4:-92843025 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.4:-92842831 | MS.gene80215:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.4:-92840782 | MS.gene80215:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.4:-92842612 | MS.gene80215:CDS |
| AGAGCTATACACAAAGAAAA+AGG | 0.360858 | 3.4:-92841106 | MS.gene80215:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.4:-92842259 | MS.gene80215:CDS |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.4:-92842452 | MS.gene80215:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.4:+92840916 | None:intergenic |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.4:+92842888 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.4:-92842577 | MS.gene80215:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.4:-92842990 | MS.gene80215:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.4:-92841248 | MS.gene80215:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.4:-92842811 | MS.gene80215:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.4:-92842250 | MS.gene80215:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.4:-92842735 | MS.gene80215:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.4:-92842364 | MS.gene80215:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.4:+92842770 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.4:-92842451 | MS.gene80215:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 3.4:-92840901 | MS.gene80215:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.4:-92842919 | MS.gene80215:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.465328 | 3.4:-92840786 | MS.gene80215:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.4:-92842564 | MS.gene80215:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.4:+92842920 | None:intergenic |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.4:-92840875 | MS.gene80215:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.4:+92840939 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.4:+92843006 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.4:-92842367 | MS.gene80215:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.4:+92842828 | None:intergenic |
| GAAACGACTACACAGCTGTA+AGG | 0.502820 | 3.4:-92841014 | MS.gene80215:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.4:-92842682 | MS.gene80215:CDS |
| GCAACATGCCTGTCTGCTCA+TGG | 0.507208 | 3.4:+92840797 | None:intergenic |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.4:-92842363 | MS.gene80215:CDS |
| GGCTGAAGTCGAGGCAAAGA+AGG | 0.508773 | 3.4:-92842226 | MS.gene80215:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.4:-92841196 | MS.gene80215:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.4:-92842247 | MS.gene80215:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.4:-92840781 | MS.gene80215:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.4:+92842840 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.4:-92842381 | MS.gene80215:CDS |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.4:-92842266 | MS.gene80215:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.4:+92842851 | None:intergenic |
| AAAGAAGGCCGTGGCTCTAA+GGG | 0.531548 | 3.4:-92842211 | MS.gene80215:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.4:-92842274 | MS.gene80215:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.4:+92842784 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.4:-92840874 | MS.gene80215:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92840858 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.4:+92842911 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.4:-92842574 | MS.gene80215:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.4:-92842503 | MS.gene80215:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.4:-92842907 | MS.gene80215:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.4:-92842286 | MS.gene80215:CDS |
| GCGGAGGGAATTGTGACACT+TGG | 0.548836 | 3.4:-92841081 | MS.gene80215:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.4:+92842545 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.4:+92840772 | None:intergenic |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.551986 | 3.4:-92842235 | MS.gene80215:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.4:-92842337 | MS.gene80215:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 3.4:-92840913 | MS.gene80215:CDS |
| AAGACTGTCCATGAGCAGAC+AGG | 0.567979 | 3.4:-92840805 | MS.gene80215:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.4:+92842875 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.4:-92841036 | MS.gene80215:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.4:+92842677 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92840856 | MS.gene80215:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.4:-92842447 | MS.gene80215:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.4:-92842376 | MS.gene80215:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.4:-92841069 | MS.gene80215:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.4:-92843024 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.4:+92842921 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.4:-92842307 | MS.gene80215:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.4:-92842685 | MS.gene80215:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 3.4:-92841169 | MS.gene80215:CDS |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 3.4:-92840895 | MS.gene80215:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.4:-92841190 | MS.gene80215:CDS |
| CGGAGGGAATTGTGACACTT+GGG | 0.601084 | 3.4:-92841080 | MS.gene80215:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.4:-92842375 | MS.gene80215:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.4:-92842723 | MS.gene80215:CDS |
| AGTCGAGGCAAAGAAGGCCG+TGG | 0.604613 | 3.4:-92842220 | MS.gene80215:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.4:-92842350 | MS.gene80215:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.4:+92842895 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 3.4:-92840896 | MS.gene80215:CDS |
| AAACGACTACACAGCTGTAA+GGG | 0.612269 | 3.4:-92841013 | MS.gene80215:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.4:-92842195 | MS.gene80215:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.4:-92842523 | MS.gene80215:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.4:-92842474 | MS.gene80215:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.4:-92841247 | MS.gene80215:intron |
| TCATGGACAGTCTTAAACAA+AGG | 0.617676 | 3.4:+92840814 | None:intergenic |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.4:-92842722 | MS.gene80215:CDS |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.4:-92842502 | MS.gene80215:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.4:+92842745 | None:intergenic |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 3.4:-92840897 | MS.gene80215:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.639524 | 3.4:+92842203 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92840956 | MS.gene80215:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.4:-92841223 | MS.gene80215:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.4:-92842688 | MS.gene80215:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.4:+92842546 | None:intergenic |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.4:+92840817 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.4:-92842106 | MS.gene80215:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.4:-92842403 | MS.gene80215:CDS |
| AGTTGCAAGGTGAAGTTGAG+AGG | 0.653383 | 3.4:-92842182 | MS.gene80215:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.4:-92842271 | MS.gene80215:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.4:-92840991 | MS.gene80215:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.4:-92840953 | MS.gene80215:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.4:+92842905 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.4:+92840775 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.4:+92842982 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.4:-92840946 | MS.gene80215:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 3.4:-92840910 | MS.gene80215:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.4:+92842807 | None:intergenic |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 3.4:-92840898 | MS.gene80215:CDS |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.4:+92842756 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.4:-92842721 | MS.gene80215:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.4:+92842829 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.4:+92842827 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.4:-92842256 | MS.gene80215:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATAATTAATCATG+TGG | - | chr3.4:92842322-92842341 | MS.gene80215:CDS | 10.0% |
| !! | TTAATTGTATAATAATTCAT+AGG | + | chr3.4:92842233-92842252 | None:intergenic | 10.0% |
| !! | ATATCTTAAAGACTAATAAA+AGG | - | chr3.4:92841854-92841873 | MS.gene80215:intron | 15.0% |
| !! | TATTATTATGACATTATAGT+TGG | - | chr3.4:92842100-92842119 | MS.gene80215:intron | 15.0% |
| !!! | ATTACTGTAATTTAAGTTTT+TGG | - | chr3.4:92841796-92841815 | MS.gene80215:intron | 15.0% |
| !!! | TCTATATAAAACTTTTATGA+CGG | + | chr3.4:92842021-92842040 | None:intergenic | 15.0% |
| !!! | TGATTATTGATTATGTTATA+TGG | - | chr3.4:92841937-92841956 | MS.gene80215:intron | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | - | chr3.4:92842261-92842280 | MS.gene80215:CDS | 20.0% |
| !! | GTAATTTGAATTGAAGAATA+TGG | - | chr3.4:92842348-92842367 | MS.gene80215:CDS | 20.0% |
| !! | TAACACTAATTACATTCTAA+TGG | - | chr3.4:92841830-92841849 | MS.gene80215:intron | 20.0% |
| !! | TCATAATAATAGTGTAACAA+AGG | + | chr3.4:92842091-92842110 | None:intergenic | 20.0% |
| !! | TGAAGTTATATATATTTCCA+TGG | + | chr3.4:92841703-92841722 | None:intergenic | 20.0% |
| !! | TTCATAGGTAATATTAACTA+TGG | + | chr3.4:92842218-92842237 | None:intergenic | 20.0% |
| !!! | AATATTTACCTTTTAAGTGT+TGG | - | chr3.4:92842450-92842469 | MS.gene80215:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.4:92841036-92841055 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr3.4:92842860-92842879 | MS.gene80215:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr3.4:92841766-92841785 | MS.gene80215:intron | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.4:92841233-92841252 | MS.gene80215:CDS | 25.0% |
| ! | TATAATAGCCAACACTTAAA+AGG | + | chr3.4:92842461-92842480 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.4:92841232-92841251 | MS.gene80215:CDS | 25.0% |
| ! | TGGCTATTATATAACTATAC+TGG | - | chr3.4:92842470-92842489 | MS.gene80215:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.4:92842860-92842879 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.4:92841322-92841341 | MS.gene80215:intron | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | - | chr3.4:92842483-92842502 | MS.gene80215:CDS | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr3.4:92842055-92842074 | MS.gene80215:intron | 25.0% |
| !!! | TTTTTTGGTGATTGAAACTT+TGG | - | chr3.4:92842498-92842517 | MS.gene80215:CDS | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | + | chr3.4:92842389-92842408 | None:intergenic | 30.0% | |
| AATTACTGGGAAACAATCAA+AGG | + | chr3.4:92842180-92842199 | None:intergenic | 30.0% | |
| AGAGCTATACACAAAGAAAA+AGG | - | chr3.4:92842667-92842686 | MS.gene80215:CDS | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.4:92841231-92841250 | None:intergenic | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.4:92841667-92841686 | MS.gene80215:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.4:92840823-92840842 | MS.gene80215:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.4:92840794-92840813 | None:intergenic | 30.0% | |
| TGTAATTAGTGTTATCACAG+AGG | + | chr3.4:92841824-92841843 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.4:92842852-92842871 | MS.gene80215:CDS | 30.0% | |
| ! | AAAAGGATAGAGAACTTTTG+AGG | - | chr3.4:92841871-92841890 | MS.gene80215:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.4:92842779-92842798 | MS.gene80215:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.4:92841038-92841057 | MS.gene80215:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.4:92842782-92842801 | MS.gene80215:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.4:92841321-92841340 | MS.gene80215:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.4:92841161-92841180 | MS.gene80215:CDS | 30.0% |
| AAGCTGAAAAGTGAAAAGGT+TGG | + | chr3.4:92842385-92842404 | None:intergenic | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.4:92842577-92842596 | MS.gene80215:CDS | 35.0% | |
| ATACACAAAGAAAAAGGAGG+CGG | - | chr3.4:92842673-92842692 | MS.gene80215:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.4:92841006-92841025 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr3.4:92842863-92842882 | MS.gene80215:CDS | 35.0% | |
| ATTGAAACTTTGGATGGTGT+AGG | - | chr3.4:92842508-92842527 | MS.gene80215:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.4:92841196-92841215 | MS.gene80215:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.4:92840925-92840944 | None:intergenic | 35.0% | |
| GATTGTTTCCCAGTAATTGA+TGG | - | chr3.4:92842182-92842201 | MS.gene80215:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.4:92841308-92841327 | MS.gene80215:intron | 35.0% | |
| GCTATACACAAAGAAAAAGG+AGG | - | chr3.4:92842670-92842689 | MS.gene80215:CDS | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.4:92841031-92841050 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.4:92840992-92841011 | None:intergenic | 35.0% | |
| TAGTGTAACAAAGGTTAAGC+AGG | + | chr3.4:92842082-92842101 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.4:92841230-92841249 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.4:92840783-92840802 | MS.gene80215:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.4:92842962-92842981 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.4:92841051-92841070 | MS.gene80215:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.4:92840888-92840907 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.4:92841326-92841345 | MS.gene80215:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.4:92843020-92843039 | None:intergenic | 35.0% |
| ! | TTGGTGATTGAAACTTTGGA+TGG | - | chr3.4:92842502-92842521 | MS.gene80215:CDS | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.4:92840834-92840853 | MS.gene80215:CDS | 35.0% |
| !! | GACTTTTGGGAAACAATCAA+TGG | + | chr3.4:92842126-92842145 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.4:92841457-92841476 | MS.gene80215:intron | 35.0% |
| AAACGACTACACAGCTGTAA+GGG | - | chr3.4:92842760-92842779 | MS.gene80215:CDS | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.4:92840901-92840920 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.4:92841423-92841442 | MS.gene80215:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92842918-92842937 | None:intergenic | 40.0% | |
| AGGCCAACTTCTCAATGTAT+CGG | + | chr3.4:92842160-92842179 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.4:92842737-92842756 | MS.gene80215:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92842917-92842936 | MS.gene80215:CDS | 40.0% | |
| ATTCCAGCACCATCAATTAC+TGG | + | chr3.4:92842194-92842213 | None:intergenic | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.4:92841050-92841069 | MS.gene80215:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.4:92841370-92841389 | MS.gene80215:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92842817-92842836 | MS.gene80215:CDS | 40.0% | |
| GATTGTTTCCCAAAAGTCAG+AGG | - | chr3.4:92842128-92842147 | MS.gene80215:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.4:92842550-92842569 | MS.gene80215:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.4:92841271-92841290 | MS.gene80215:intron | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.4:92842526-92842545 | MS.gene80215:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.4:92841299-92841318 | MS.gene80215:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.4:92841436-92841455 | MS.gene80215:intron | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.4:92841199-92841218 | MS.gene80215:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.4:92841270-92841289 | MS.gene80215:intron | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.4:92842959-92842978 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.4:92842525-92842544 | MS.gene80215:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.4:92841052-92841071 | MS.gene80215:CDS | 40.0% | |
| TTCCAGCACCATCAATTACT+GGG | + | chr3.4:92842193-92842212 | None:intergenic | 40.0% | |
| TTGCCGATACATTGAGAAGT+TGG | - | chr3.4:92842154-92842173 | MS.gene80215:CDS | 40.0% | |
| ! | AACTTCTCAATGTATCGGCA+AGG | + | chr3.4:92842155-92842174 | None:intergenic | 40.0% |
| ! | ACTTCTCAATGTATCGGCAA+GGG | + | chr3.4:92842154-92842173 | None:intergenic | 40.0% |
| ! | TCCATGGACTAAACTAACCT+TGG | + | chr3.4:92841687-92841706 | None:intergenic | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.4:92841499-92841518 | MS.gene80215:intron | 40.0% |
| !! | ACCAAGGTTAGTTTAGTCCA+TGG | - | chr3.4:92841683-92841702 | MS.gene80215:intron | 40.0% |
| ACAAAGAAAAAGGAGGCGGA+GGG | - | chr3.4:92842677-92842696 | MS.gene80215:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.4:92840949-92840968 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.4:92840881-92840900 | None:intergenic | 45.0% | |
| AGTTGCAAGGTGAAGTTGAG+AGG | - | chr3.4:92841591-92841610 | MS.gene80215:intron | 45.0% | |
| GAAACGACTACACAGCTGTA+AGG | - | chr3.4:92842759-92842778 | MS.gene80215:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr3.4:92841466-92841485 | MS.gene80215:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.4:92841487-92841506 | MS.gene80215:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92842583-92842602 | MS.gene80215:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.4:92842820-92842839 | MS.gene80215:CDS | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | - | chr3.4:92842872-92842891 | MS.gene80215:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.4:92841250-92841269 | MS.gene80215:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.4:92842890-92842909 | MS.gene80215:CDS | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.4:92841502-92841521 | MS.gene80215:intron | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | - | chr3.4:92842875-92842894 | MS.gene80215:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | - | chr3.4:92842876-92842895 | MS.gene80215:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.4:92842899-92842918 | MS.gene80215:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | - | chr3.4:92842877-92842896 | MS.gene80215:CDS | 45.0% |
| !! | TTCCCAGTAATTGATGGTGC+TGG | - | chr3.4:92842188-92842207 | MS.gene80215:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.4:92840936-92840955 | None:intergenic | 50.0% | |
| AAGACTGTCCATGAGCAGAC+AGG | - | chr3.4:92842968-92842987 | MS.gene80215:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.4:92842992-92843011 | MS.gene80215:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.4:92840770-92840789 | None:intergenic | 50.0% | |
| CACAAAGAAAAAGGAGGCGG+AGG | - | chr3.4:92842676-92842695 | MS.gene80215:CDS | 50.0% | |
| CGGAGGGAATTGTGACACTT+GGG | - | chr3.4:92842693-92842712 | MS.gene80215:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.4:92841578-92841597 | MS.gene80215:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.4:92840969-92840988 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.4:92841099-92841118 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.4:92840947-92840966 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.4:92840948-92840967 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.4:92842704-92842723 | MS.gene80215:CDS | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | - | chr3.4:92841392-92841411 | MS.gene80215:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.4:92841020-92841039 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.4:92841101-92841120 | MS.gene80215:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr3.4:92842604-92842623 | MS.gene80215:CDS | 50.0% |
| !! | AAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.4:92841562-92841581 | MS.gene80215:intron | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | - | chr3.4:92842878-92842897 | MS.gene80215:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.4:92842898-92842917 | MS.gene80215:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.4:92840855-92840874 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.4:92843001-92843020 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.4:92841085-92841104 | MS.gene80215:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.4:92842827-92842846 | MS.gene80215:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.4:92840856-92840875 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.4:92842991-92843010 | MS.gene80215:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.4:92841573-92841592 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.4:92840942-92840961 | MS.gene80215:CDS | 55.0% | |
| GCAACATGCCTGTCTGCTCA+TGG | + | chr3.4:92842979-92842998 | None:intergenic | 55.0% | |
| GCGGAGGGAATTGTGACACT+TGG | - | chr3.4:92842692-92842711 | MS.gene80215:CDS | 55.0% | |
| GGCTGAAGTCGAGGCAAAGA+AGG | - | chr3.4:92841547-92841566 | MS.gene80215:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.4:92843004-92843023 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.4:92840871-92840890 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.4:92841091-92841110 | MS.gene80215:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.4:92841507-92841526 | MS.gene80215:intron | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.4:92841209-92841228 | MS.gene80215:CDS | 55.0% |
| ! | CAAAGAAGGCCGTGGCTCTA+AGG | - | chr3.4:92841561-92841580 | MS.gene80215:intron | 55.0% |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.4:92841514-92841533 | MS.gene80215:intron | 55.0% |
| ! | GGCAAGGGCCTCTGACTTTT+GGG | + | chr3.4:92842139-92842158 | None:intergenic | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.4:92840962-92840981 | MS.gene80215:CDS | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.4:92841409-92841428 | MS.gene80215:intron | 60.0% | |
| AGTCGAGGCAAAGAAGGCCG+TGG | - | chr3.4:92841553-92841572 | MS.gene80215:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.4:92840866-92840885 | MS.gene80215:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.4:92842987-92843006 | MS.gene80215:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.4:92841088-92841107 | MS.gene80215:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.4:92840854-92840873 | MS.gene80215:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.4:92841406-92841425 | MS.gene80215:intron | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.4:92841398-92841417 | MS.gene80215:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.4:92841410-92841429 | MS.gene80215:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.4:92840865-92840884 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.4:92841397-92841416 | MS.gene80215:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.4:92841526-92841545 | MS.gene80215:intron | 60.0% | |
| ! | CGGCAAGGGCCTCTGACTTT+TGG | + | chr3.4:92842140-92842159 | None:intergenic | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.4:92841517-92841536 | MS.gene80215:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.4:92842837-92842856 | None:intergenic | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr3.4:92841538-92841557 | MS.gene80215:intron | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.4:92841523-92841542 | MS.gene80215:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92840756 | 92843039 | 92840756 | ID=MS.gene80215 |
| chr3.4 | mRNA | 92840756 | 92843039 | 92840756 | ID=MS.gene80215.t1;Parent=MS.gene80215 |
| chr3.4 | exon | 92842107 | 92843039 | 92842107 | ID=MS.gene80215.t1.exon1;Parent=MS.gene80215.t1 |
| chr3.4 | CDS | 92842107 | 92843039 | 92842107 | ID=cds.MS.gene80215.t1;Parent=MS.gene80215.t1 |
| chr3.4 | exon | 92840756 | 92841265 | 92840756 | ID=MS.gene80215.t1.exon2;Parent=MS.gene80215.t1 |
| chr3.4 | CDS | 92840756 | 92841265 | 92840756 | ID=cds.MS.gene80215.t1;Parent=MS.gene80215.t1 |
| Gene Sequence |
| Protein sequence |
