Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32110.t1 | RHN80248.1 | 97.3 | 478 | 9 | 1 | 1 | 478 | 1 | 474 | 1.30E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32110.t1 | D2XNQ8 | 91.6 | 478 | 40 | 0 | 1 | 478 | 1 | 478 | 5.6e-179 | 628.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32110.t1 | A0A072VLE3 | 96.4 | 478 | 13 | 1 | 1 | 478 | 1 | 474 | 9.1e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051181 | MS.gene32110 | 0.801241 | 9.88E-49 | -1.69E-46 |
| MS.gene055316 | MS.gene32110 | 0.826889 | 2.12E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene32110 | 0.811875 | 5.62E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32110.t1 | MTR_1g073400 | 97.071 | 478 | 10 | 1 | 1 | 478 | 1 | 474 | 0.0 | 942 |
| MS.gene32110.t1 | MTR_3g106480 | 92.259 | 478 | 37 | 0 | 1 | 478 | 1 | 478 | 0.0 | 908 |
| MS.gene32110.t1 | MTR_1g115145 | 94.154 | 479 | 21 | 3 | 1 | 478 | 1 | 473 | 0.0 | 888 |
| MS.gene32110.t1 | MTR_1g071130 | 91.841 | 478 | 10 | 2 | 1 | 478 | 1 | 449 | 0.0 | 887 |
| MS.gene32110.t1 | MTR_3g106420 | 91.632 | 478 | 40 | 0 | 1 | 478 | 3 | 480 | 0.0 | 875 |
| MS.gene32110.t1 | MTR_3g106485 | 92.259 | 478 | 33 | 2 | 1 | 478 | 1 | 474 | 0.0 | 874 |
| MS.gene32110.t1 | MTR_3g106430 | 91.614 | 477 | 36 | 2 | 1 | 477 | 1 | 473 | 0.0 | 837 |
| MS.gene32110.t1 | MTR_1g083190 | 88.912 | 478 | 45 | 1 | 1 | 478 | 3 | 472 | 0.0 | 837 |
| MS.gene32110.t1 | MTR_3g106470 | 80.713 | 477 | 36 | 2 | 1 | 477 | 32 | 452 | 0.0 | 737 |
| MS.gene32110.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 1 | 464 | 1 | 425 | 0.0 | 674 |
| MS.gene32110.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 1.46e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32110.t1 | AT5G25260 | 75.316 | 474 | 105 | 2 | 1 | 474 | 1 | 462 | 0.0 | 739 |
| MS.gene32110.t1 | AT5G25250 | 75.264 | 473 | 103 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| MS.gene32110.t1 | AT5G64870 | 71.610 | 472 | 123 | 1 | 2 | 473 | 3 | 463 | 0.0 | 662 |
Find 116 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.2:+56039222 | MS.gene32110:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.2:+56040630 | MS.gene32110:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1.2:+56040676 | MS.gene32110:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.2:+56039550 | MS.gene32110:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.2:+56040557 | MS.gene32110:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.2:+56039223 | MS.gene32110:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.2:+56039310 | MS.gene32110:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1.2:+56040303 | MS.gene32110:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.2:-56040635 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1.2:+56038931 | MS.gene32110:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.2:+56039412 | MS.gene32110:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.2:+56040769 | MS.gene32110:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.2:-56039164 | None:intergenic |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1.2:+56040537 | MS.gene32110:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.2:+56040638 | MS.gene32110:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.2:+56039185 | MS.gene32110:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.2:+56039150 | MS.gene32110:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.2:+56038737 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.2:+56038951 | MS.gene32110:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.2:+56038812 | MS.gene32110:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.2:+56039151 | MS.gene32110:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.2:+56038772 | MS.gene32110:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.2:-56038791 | None:intergenic |
| ATCATGAGGTGAAATCAGTT+TGG | 0.447539 | 1.2:-56038992 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.2:+56040355 | MS.gene32110:CDS |
| AAATCAGTTTGGCGTATTTG+AGG | 0.470492 | 1.2:-56038981 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.2:+56039239 | MS.gene32110:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.2:+56040746 | MS.gene32110:CDS |
| GAAGAAAGCAGCTTGGACTA+AGG | 0.496411 | 1.2:+56039503 | MS.gene32110:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.2:+56039259 | MS.gene32110:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.2:+56039551 | MS.gene32110:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.2:+56040765 | MS.gene32110:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.2:+56039080 | MS.gene32110:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.2:+56038762 | MS.gene32110:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.2:+56039425 | MS.gene32110:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.2:+56039297 | MS.gene32110:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.2:+56039027 | MS.gene32110:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.2:-56040754 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.2:+56040770 | MS.gene32110:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.2:+56039381 | MS.gene32110:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.2:+56038778 | MS.gene32110:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1.2:+56040695 | MS.gene32110:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.2:+56039198 | MS.gene32110:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.2:-56039091 | None:intergenic |
| ACTTCGAAGGTATAGTTCAC+AGG | 0.531584 | 1.2:-56038874 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.2:+56039376 | MS.gene32110:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.2:+56039527 | MS.gene32110:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.2:+56040641 | MS.gene32110:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.2:-56038780 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.2:+56040577 | MS.gene32110:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.2:-56038773 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.2:+56039476 | MS.gene32110:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1.2:+56040664 | MS.gene32110:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1.2:+56040470 | MS.gene32110:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.2:-56040779 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1.2:+56040515 | MS.gene32110:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.2:+56039461 | MS.gene32110:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.561126 | 1.2:+56039515 | MS.gene32110:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1.2:+56040295 | MS.gene32110:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.2:+56038813 | MS.gene32110:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1.2:+56040688 | MS.gene32110:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.2:+56039188 | MS.gene32110:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1.2:-56038934 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.2:-56039577 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1.2:+56040677 | MS.gene32110:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.2:+56039074 | MS.gene32110:CDS |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.2:-56038841 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.2:+56039580 | MS.gene32110:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1.2:+56040304 | MS.gene32110:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.2:+56039311 | MS.gene32110:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.2:+56040482 | MS.gene32110:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.2:+56039455 | MS.gene32110:CDS |
| AAACGACTACACAGCTCTAA+GGG | 0.592700 | 1.2:+56040538 | MS.gene32110:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.2:+56039567 | MS.gene32110:CDS |
| TCAGTTTGGCGTATTTGAGG+AGG | 0.598069 | 1.2:-56038978 | None:intergenic |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1.2:+56040471 | MS.gene32110:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.2:+56040361 | MS.gene32110:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.2:-56038887 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.2:+56040656 | MS.gene32110:CDS |
| TGGCGAAGAAGAAAGCAGCT+TGG | 0.608119 | 1.2:+56039496 | MS.gene32110:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.2:+56040650 | MS.gene32110:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.2:+56039399 | MS.gene32110:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.2:+56039039 | MS.gene32110:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.2:+56039288 | MS.gene32110:CDS |
| CACAGGTGAGAGGTCGAAGA+CGG | 0.624112 | 1.2:-56038857 | None:intergenic |
| AGGTATAGTTCACAGGTGAG+AGG | 0.626851 | 1.2:-56038867 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.2:+56039398 | MS.gene32110:CDS |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.2:-56038922 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.2:+56039260 | MS.gene32110:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.2:+56039040 | MS.gene32110:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.2:+56039377 | MS.gene32110:CDS |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.635413 | 1.2:+56039315 | MS.gene32110:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1.2:+56040605 | MS.gene32110:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.2:-56039216 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.2:+56038738 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.2:+56039656 | MS.gene32110:CDS |
| GAAAGCAGCTTGGACTAAGG+CGG | 0.646507 | 1.2:+56039506 | MS.gene32110:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.2:+56039395 | MS.gene32110:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.2:+56039572 | MS.gene32110:CDS |
| TTGGCTCGAAATCTAGGGAA+GGG | 0.650991 | 1.2:+56039316 | MS.gene32110:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.2:+56039014 | MS.gene32110:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.2:-56040734 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.2:+56040560 | MS.gene32110:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.2:-56040737 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.2:+56039542 | MS.gene32110:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1.2:+56040668 | MS.gene32110:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.2:-56040776 | None:intergenic |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.2:+56040653 | MS.gene32110:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.2:-56039006 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.2:+56040595 | MS.gene32110:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.2:+56039269 | MS.gene32110:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.2:-56038955 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.2:-56038840 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.2:+56039041 | MS.gene32110:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.2:-56038935 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.2:-56039074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1.2:56039703-56039722 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1.2:56039755-56039774 | MS.gene32110:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.2:56039223-56039242 | MS.gene32110:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1.2:56039929-56039948 | MS.gene32110:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1.2:56040264-56040283 | MS.gene32110:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1.2:56039985-56040004 | MS.gene32110:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.2:56039222-56039241 | MS.gene32110:CDS | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+AGG | - | chr1.2:56040185-56040204 | None:intergenic | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1.2:56040180-56040199 | None:intergenic | 20.0% |
| !! | TTAATATGTTATATGGACAA+TGG | + | chr1.2:56039853-56039872 | MS.gene32110:intron | 20.0% |
| !!! | AATGGAATAGTCAAATTTTT+TGG | + | chr1.2:56039871-56039890 | MS.gene32110:intron | 20.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1.2:56040107-56040126 | MS.gene32110:intron | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1.2:56040638-56040657 | MS.gene32110:CDS | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1.2:56040036-56040055 | None:intergenic | 25.0% |
| ! | AGCAAATAGATTGAAGAATA+TGG | + | chr1.2:56040139-56040158 | MS.gene32110:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1.2:56040217-56040236 | MS.gene32110:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.2:56040638-56040657 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.2:56040630-56040649 | MS.gene32110:CDS | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1.2:56040043-56040062 | MS.gene32110:intron | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1.2:56039789-56039808 | MS.gene32110:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1.2:56040276-56040295 | MS.gene32110:intron | 25.0% |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1.2:56039687-56039706 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1.2:56040641-56040660 | MS.gene32110:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.2:56038813-56038832 | MS.gene32110:CDS | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1.2:56040037-56040056 | None:intergenic | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.2:56039219-56039238 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.2:56038812-56038831 | MS.gene32110:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.2:56039167-56039186 | None:intergenic | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1.2:56040176-56040195 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.2:56040557-56040576 | MS.gene32110:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.2:56040560-56040579 | MS.gene32110:CDS | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1.2:56040286-56040305 | MS.gene32110:intron | 30.0% |
| AAATCAGTTTGGCGTATTTG+AGG | - | chr1.2:56038984-56039003 | None:intergenic | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.2:56039151-56039170 | MS.gene32110:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1.2:56040515-56040534 | MS.gene32110:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.2:56040355-56040374 | MS.gene32110:CDS | 35.0% | |
| ATCATGAGGTGAAATCAGTT+TGG | - | chr1.2:56038995-56039014 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1.2:56040456-56040475 | MS.gene32110:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.2:56039150-56039169 | MS.gene32110:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.2:56039185-56039204 | MS.gene32110:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.2:56039377-56039396 | MS.gene32110:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.2:56040448-56040467 | MS.gene32110:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.2:56039014-56039033 | MS.gene32110:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.2:56039040-56039059 | MS.gene32110:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.2:56039009-56039028 | None:intergenic | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.2:56038914-56038933 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.2:56039676-56039695 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.2:56039656-56039675 | MS.gene32110:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1.2:56040798-56040817 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.2:56039446-56039465 | MS.gene32110:CDS | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1.2:56040280-56040299 | MS.gene32110:intron | 35.0% |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1.2:56040008-56040027 | MS.gene32110:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1.2:56040082-56040101 | MS.gene32110:intron | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.2:56039041-56039060 | MS.gene32110:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.2:56039027-56039046 | MS.gene32110:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.2:56039376-56039395 | MS.gene32110:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.2:56039039-56039058 | MS.gene32110:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.2:56039350-56039369 | MS.gene32110:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1.2:56040455-56040474 | MS.gene32110:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.2:56039297-56039316 | MS.gene32110:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.2:56039425-56039444 | MS.gene32110:CDS | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.2:56040740-56040759 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.2:56039188-56039207 | MS.gene32110:CDS | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1.2:56040304-56040323 | MS.gene32110:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1.2:56040295-56040314 | MS.gene32110:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1.2:56040303-56040322 | MS.gene32110:intron | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1.2:56040538-56040557 | MS.gene32110:CDS | 40.0% |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.2:56038823-56038842 | MS.gene32110:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.2:56039412-56039431 | MS.gene32110:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+AGG | - | chr1.2:56038877-56038896 | None:intergenic | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1.2:56040677-56040696 | MS.gene32110:CDS | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.2:56039239-56039258 | MS.gene32110:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.2:56039311-56039330 | MS.gene32110:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1.2:56040746-56040765 | MS.gene32110:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1.2:56040653-56040672 | MS.gene32110:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.2:56038890-56038909 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1.2:56038938-56038957 | None:intergenic | 45.0% | |
| AGGGATCCACGATTTAGACT+TGG | - | chr1.2:56040017-56040036 | None:intergenic | 45.0% | |
| AGGTATAGTTCACAGGTGAG+AGG | - | chr1.2:56038870-56038889 | None:intergenic | 45.0% | |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1.2:56040688-56040707 | MS.gene32110:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1.2:56040471-56040490 | MS.gene32110:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1.2:56040537-56040556 | MS.gene32110:CDS | 45.0% | |
| GAAGAAAGCAGCTTGGACTA+AGG | + | chr1.2:56039503-56039522 | MS.gene32110:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.2:56039455-56039474 | MS.gene32110:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1.2:56040595-56040614 | MS.gene32110:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.2:56039288-56039307 | MS.gene32110:CDS | 45.0% | |
| TCAGTTTGGCGTATTTGAGG+AGG | - | chr1.2:56038981-56039000 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.2:56040361-56040380 | MS.gene32110:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1.2:56040664-56040683 | MS.gene32110:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.2:56040737-56040756 | None:intergenic | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1.2:56040650-56040669 | MS.gene32110:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1.2:56040577-56040596 | MS.gene32110:CDS | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.2:56039090-56039109 | MS.gene32110:CDS | 45.0% |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1.2:56040676-56040695 | MS.gene32110:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.2:56039094-56039113 | None:intergenic | 45.0% |
| ! | TTGGCTCGAAATCTAGGGAA+GGG | + | chr1.2:56039316-56039335 | MS.gene32110:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.2:56039310-56039329 | MS.gene32110:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.2:56039551-56039570 | MS.gene32110:CDS | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1.2:56039846-56039865 | MS.gene32110:intron | 5.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.2:56038925-56038944 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.2:56038844-56038863 | None:intergenic | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1.2:56040656-56040675 | MS.gene32110:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.2:56038843-56038862 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.2:56039580-56039599 | MS.gene32110:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1.2:56040605-56040624 | MS.gene32110:CDS | 50.0% | |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1.2:56040695-56040714 | MS.gene32110:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.2:56040770-56040789 | MS.gene32110:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.2:56039580-56039599 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.2:56038931-56038950 | MS.gene32110:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.2:56038958-56038977 | None:intergenic | 50.0% | |
| GAAAGCAGCTTGGACTAAGG+CGG | + | chr1.2:56039506-56039525 | MS.gene32110:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.2:56039269-56039288 | MS.gene32110:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1.2:56040782-56040801 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.2:56038794-56038813 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1.2:56040757-56040776 | None:intergenic | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1.2:56040470-56040489 | MS.gene32110:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.2:56039260-56039279 | MS.gene32110:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1.2:56038937-56038956 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.2:56039476-56039495 | MS.gene32110:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1.2:56040482-56040501 | MS.gene32110:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.2:56039381-56039400 | MS.gene32110:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.2:56038772-56038791 | MS.gene32110:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.2:56038776-56038795 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.2:56039080-56039099 | MS.gene32110:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.2:56039259-56039278 | MS.gene32110:CDS | 50.0% | |
| TGGCGAAGAAGAAAGCAGCT+TGG | + | chr1.2:56039496-56039515 | MS.gene32110:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.2:56039198-56039217 | MS.gene32110:CDS | 50.0% |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1.2:56040668-56040687 | MS.gene32110:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.2:56039550-56039569 | MS.gene32110:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.2:56038762-56038781 | MS.gene32110:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.2:56038905-56038924 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.2:56039315-56039334 | MS.gene32110:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.2:56039461-56039480 | MS.gene32110:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1.2:56040779-56040798 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.2:56039542-56039561 | MS.gene32110:CDS | 55.0% | |
| CACAGGTGAGAGGTCGAAGA+CGG | - | chr1.2:56038860-56038879 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.2:56040769-56040788 | MS.gene32110:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.2:56039567-56039586 | MS.gene32110:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.2:56039399-56039418 | MS.gene32110:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.2:56038778-56038797 | MS.gene32110:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.2:56038783-56038802 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.2:56039515-56039534 | MS.gene32110:CDS | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.2:56038951-56038970 | MS.gene32110:CDS | 55.0% |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1.2:56040765-56040784 | MS.gene32110:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.2:56039077-56039096 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.2:56039074-56039093 | MS.gene32110:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.2:56039395-56039414 | MS.gene32110:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.2:56039572-56039591 | MS.gene32110:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.2:56039527-56039546 | MS.gene32110:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.2:56039398-56039417 | MS.gene32110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 56038751 | 56040817 | 56038751 | ID=MS.gene32110 |
| chr1.2 | mRNA | 56038751 | 56040817 | 56038751 | ID=MS.gene32110.t1;Parent=MS.gene32110 |
| chr1.2 | exon | 56038751 | 56039677 | 56038751 | ID=MS.gene32110.t1.exon1;Parent=MS.gene32110.t1 |
| chr1.2 | CDS | 56038751 | 56039677 | 56038751 | ID=cds.MS.gene32110.t1;Parent=MS.gene32110.t1 |
| chr1.2 | exon | 56040308 | 56040817 | 56040308 | ID=MS.gene32110.t1.exon2;Parent=MS.gene32110.t1 |
| chr1.2 | CDS | 56040308 | 56040817 | 56040308 | ID=cds.MS.gene32110.t1;Parent=MS.gene32110.t1 |
| Gene Sequence |
| Protein sequence |
