Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014872.t1 | PNY01485.1 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 7.20E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014872.t1 | D2XNQ9 | 90.8 | 479 | 44 | 0 | 1 | 479 | 1 | 479 | 3.0e-180 | 632.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014872.t1 | A0A2K3NEM2 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 5.2e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014872.t1 | MTR_3g106420 | 93.737 | 479 | 30 | 0 | 1 | 479 | 1 | 479 | 0.0 | 892 |
| MS.gene014872.t1 | MTR_3g106480 | 91.195 | 477 | 42 | 0 | 3 | 479 | 1 | 477 | 0.0 | 889 |
| MS.gene014872.t1 | MTR_3g106485 | 92.872 | 477 | 30 | 2 | 3 | 479 | 1 | 473 | 0.0 | 870 |
| MS.gene014872.t1 | MTR_1g083190 | 92.067 | 479 | 30 | 1 | 1 | 479 | 1 | 471 | 0.0 | 868 |
| MS.gene014872.t1 | MTR_3g106430 | 92.243 | 477 | 33 | 2 | 3 | 479 | 1 | 473 | 0.0 | 838 |
| MS.gene014872.t1 | MTR_1g073400 | 89.937 | 477 | 44 | 1 | 3 | 479 | 1 | 473 | 0.0 | 832 |
| MS.gene014872.t1 | MTR_1g115145 | 87.657 | 478 | 52 | 3 | 3 | 479 | 1 | 472 | 0.0 | 828 |
| MS.gene014872.t1 | MTR_1g071130 | 85.115 | 477 | 42 | 2 | 3 | 479 | 1 | 448 | 0.0 | 827 |
| MS.gene014872.t1 | MTR_3g106470 | 86.875 | 480 | 7 | 2 | 1 | 480 | 30 | 453 | 0.0 | 792 |
| MS.gene014872.t1 | MTR_8g063830 | 81.290 | 465 | 46 | 5 | 3 | 466 | 1 | 425 | 0.0 | 683 |
| MS.gene014872.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 3.91e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014872.t1 | AT5G25260 | 73.840 | 474 | 112 | 2 | 3 | 476 | 1 | 462 | 0.0 | 724 |
| MS.gene014872.t1 | AT5G25250 | 73.013 | 478 | 115 | 2 | 3 | 480 | 1 | 464 | 0.0 | 716 |
| MS.gene014872.t1 | AT5G64870 | 70.440 | 477 | 130 | 1 | 4 | 480 | 3 | 468 | 0.0 | 659 |
Find 113 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.044243 | 3.3:-87399947 | MS.gene014872:CDS |
| CAACTTGAGTTGAATCAATT+TGG | 0.187809 | 3.3:-87400018 | MS.gene014872:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.3:-87398524 | MS.gene014872:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.283314 | 3.3:-87399946 | MS.gene014872:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.3:-87399618 | MS.gene014872:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.3:+87400146 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.312153 | 3.3:-87398385 | MS.gene014872:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.3:-87399871 | MS.gene014872:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.3:-87398597 | MS.gene014872:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.3:-87400237 | MS.gene014872:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3.3:+87400294 | None:intergenic |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.3:+87398519 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.3:-87398516 | MS.gene014872:CDS |
| GTTATTTCGCTGCAGAGAAC+TGG | 0.390936 | 3.3:-87399787 | MS.gene014872:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.404543 | 3.3:-87399858 | MS.gene014872:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.3:-87400396 | MS.gene014872:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.3:-87398851 | MS.gene014872:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.3:-87400217 | MS.gene014872:CDS |
| AGCTTGGACTAAGGCGGCTC+AGG | 0.418423 | 3.3:-87399656 | MS.gene014872:CDS |
| GAAGAAGGCAGCTTGGACTA+AGG | 0.419386 | 3.3:-87399665 | MS.gene014872:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.3:-87400141 | MS.gene014872:CDS |
| CGGTCAATCCTGCTCCGTCT+TGG | 0.421815 | 3.3:-87400325 | MS.gene014872:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.453058 | 3.3:+87400176 | None:intergenic |
| CAATGCGAATGTTAAGCAAC+TGG | 0.456641 | 3.3:-87399983 | MS.gene014872:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.466301 | 3.3:-87398384 | MS.gene014872:CDS |
| CAAGACGGAGCAGGATTGAC+CGG | 0.473034 | 3.3:+87400326 | None:intergenic |
| TGGACTAATGGTGGTGATAG+TGG | 0.473313 | 3.3:-87398504 | MS.gene014872:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 3.3:-87400345 | MS.gene014872:CDS |
| CGGGCATGTTGCCTCCTGCT+TGG | 0.479649 | 3.3:-87398389 | MS.gene014872:CDS |
| GGCTGAAGTAGAGGCGAAGA+AGG | 0.482630 | 3.3:-87399632 | MS.gene014872:CDS |
| GAAACAACTACACTGCTGTA+AGG | 0.484359 | 3.3:-87398617 | MS.gene014872:CDS |
| TAAGACTGTCCATGAGCAAA+CGG | 0.494142 | 3.3:-87398409 | MS.gene014872:CDS |
| CTCAAGTCCGCGTACTGCCT+CGG | 0.500340 | 3.3:+87398542 | None:intergenic |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.3:+87400234 | None:intergenic |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.505461 | 3.3:-87399653 | MS.gene014872:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.3:-87399909 | MS.gene014872:CDS |
| CAGTGTTCAATATGAAACTA+AGG | 0.509433 | 3.3:-87399512 | MS.gene014872:intron |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.3:-87398799 | MS.gene014872:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 3.3:-87400088 | MS.gene014872:CDS |
| CTCCGTCTTGGACCTCTCAC+CGG | 0.514067 | 3.3:-87400313 | MS.gene014872:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.515574 | 3.3:-87399680 | MS.gene014872:CDS |
| CTAAGGGATGCTGAGTTACA+AGG | 0.517627 | 3.3:-87399601 | MS.gene014872:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.3:+87400246 | None:intergenic |
| GCAACATGCCCGTTTGCTCA+TGG | 0.523503 | 3.3:+87398400 | None:intergenic |
| AAGCAACTGGTGGATGTGCC+TGG | 0.524212 | 3.3:-87399970 | MS.gene014872:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.3:-87399617 | MS.gene014872:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.3:+87400257 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+GGG | 0.532359 | 3.3:-87398408 | MS.gene014872:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.3:-87398513 | MS.gene014872:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.3:+87400190 | None:intergenic |
| TGGCTAAGAAGAAGGCAGCT+TGG | 0.534710 | 3.3:-87399672 | MS.gene014872:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.3:+87398461 | None:intergenic |
| TGAGAGGTCCAAGACGGAGC+AGG | 0.535402 | 3.3:+87400317 | None:intergenic |
| GAGAGAGGCTGAAGTGGCGG+AGG | 0.538584 | 3.3:-87399707 | MS.gene014872:CDS |
| GGCTCAGGTGGCTGAAGTAG+AGG | 0.543694 | 3.3:-87399641 | MS.gene014872:CDS |
| ATTGAACACTGGCTTTGCTA+AGG | 0.543911 | 3.3:+87399524 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.3:-87398684 | MS.gene014872:CDS |
| GATAAGGCTCCCATCCAAGC+AGG | 0.548081 | 3.3:+87398375 | None:intergenic |
| GAGAACTGGAGAGGGTGACA+AGG | 0.548225 | 3.3:-87399773 | MS.gene014872:CDS |
| GAATCAGAGAGAGGCTGAAG+TGG | 0.550154 | 3.3:-87399713 | MS.gene014872:CDS |
| CTTAGTTTCATATTGAACAC+TGG | 0.552173 | 3.3:+87399513 | None:intergenic |
| GGCGGAGGCTAATTCTGAGT+TGG | 0.552406 | 3.3:-87399692 | MS.gene014872:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.3:-87399743 | MS.gene014872:CDS |
| AAACAACTACACTGCTGTAA+GGG | 0.568312 | 3.3:-87398616 | MS.gene014872:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.3:-87398639 | MS.gene014872:CDS |
| TCAGAGAGAGGCTGAAGTGG+CGG | 0.571247 | 3.3:-87399710 | MS.gene014872:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 3.3:-87400356 | MS.gene014872:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.3:+87400083 | None:intergenic |
| AGTAGAGGCGAAGAAGGCCG+TGG | 0.579775 | 3.3:-87399626 | MS.gene014872:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87398459 | MS.gene014872:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 3.3:-87398772 | MS.gene014872:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.3:-87398672 | MS.gene014872:CDS |
| AACTGGAGAGGGTGACAAGG+AGG | 0.588193 | 3.3:-87399770 | MS.gene014872:CDS |
| AAGACGGAGCAGGATTGACC+GGG | 0.589066 | 3.3:+87400327 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.3:-87398683 | MS.gene014872:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.3:-87398793 | MS.gene014872:CDS |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3.3:+87400281 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.3:-87400129 | MS.gene014872:CDS |
| ATTGGTTCGAAATTGAGGCA+AGG | 0.608694 | 3.3:-87399853 | MS.gene014872:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.3:-87399588 | MS.gene014872:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.3:-87399880 | MS.gene014872:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.3:-87398850 | MS.gene014872:intron |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3.3:+87400301 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.3:+87398417 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.620084 | 3.3:-87400091 | MS.gene014872:CDS |
| TTCGCTGCAGAGAACTGGAG+AGG | 0.620124 | 3.3:-87399782 | MS.gene014872:CDS |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.3:-87399929 | MS.gene014872:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.626113 | 3.3:-87400128 | MS.gene014872:CDS |
| ATTAATGCCGAGGCAGTACG+CGG | 0.627180 | 3.3:-87398549 | MS.gene014872:CDS |
| GGGACTTTATCGTGTAGCAA+AGG | 0.633548 | 3.3:-87400421 | MS.gene014872:CDS |
| ACTGGAGAGGGTGACAAGGA+GGG | 0.634623 | 3.3:-87399769 | MS.gene014872:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 3.3:+87399952 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.3:-87399908 | MS.gene014872:CDS |
| CTCAGCATCCCTTAGAGCCA+CGG | 0.641954 | 3.3:+87399609 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87398559 | MS.gene014872:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.3:-87398826 | MS.gene014872:CDS |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3.3:-87400094 | MS.gene014872:CDS |
| TCGCTGCAGAGAACTGGAGA+GGG | 0.653793 | 3.3:-87399781 | MS.gene014872:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 3.3:+87398420 | None:intergenic |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.656829 | 3.3:+87400311 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.3:-87398594 | MS.gene014872:CDS |
| TGCGAATGTTAAGCAACTGG+TGG | 0.658886 | 3.3:-87399980 | MS.gene014872:CDS |
| AAGGCTCCCATCCAAGCAGG+AGG | 0.676037 | 3.3:+87398378 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.3:-87399899 | MS.gene014872:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.3:+87400213 | None:intergenic |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.3:-87399756 | MS.gene014872:CDS |
| ACTAATGGTGGTGATAGTGG+TGG | 0.697741 | 3.3:-87398501 | MS.gene014872:CDS |
| TTAGAATACCTGTTATCACA+AGG | 0.699616 | 3.3:+87400388 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.712596 | 3.3:-87400127 | MS.gene014872:CDS |
| GAAGGCAGCTTGGACTAAGG+CGG | 0.713400 | 3.3:-87399662 | MS.gene014872:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.3:+87400235 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.3:+87400233 | None:intergenic |
| TGATTGGAGTGTCTATCATG+CGG | 0.778717 | 3.3:+87400162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTATACTTTAATAT+TGG | - | chr3.3:87399824-87399843 | MS.gene014872:CDS | 10.0% |
| !! | CATTTGGTTAAAAATTAAAA+GGG | + | chr3.3:87399473-87399492 | None:intergenic | 15.0% |
| !! | TCATTTGGTTAAAAATTAAA+AGG | + | chr3.3:87399474-87399493 | None:intergenic | 15.0% |
| !!! | AGTTTCATTTTTTAAACAAT+TGG | - | chr3.3:87399664-87399683 | MS.gene014872:CDS | 15.0% |
| !!! | ATATTTTAAAGACCAATTAA+AGG | - | chr3.3:87399550-87399569 | MS.gene014872:CDS | 15.0% |
| !!! | AATTCTCTATAAAGCTTTAA+TGG | + | chr3.3:87399721-87399740 | None:intergenic | 20.0% |
| !!! | ACAATTTGATATGTTTTGAT+AGG | - | chr3.3:87399357-87399376 | MS.gene014872:intron | 20.0% |
| !!! | ATGTTTTCAATATTTAGTGT+TGG | - | chr3.3:87399851-87399870 | MS.gene014872:CDS | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | chr3.3:87399633-87399652 | MS.gene014872:CDS | 20.0% |
| ! | AAAGTTGTGTATCCTTTAAT+TGG | + | chr3.3:87399565-87399584 | None:intergenic | 25.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.3:87398639-87398658 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.3:87400266-87400285 | MS.gene014872:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.3:87398836-87398855 | MS.gene014872:CDS | 25.0% |
| ! | CTTTAATGGTGAAAAAAAAC+AGG | + | chr3.3:87399707-87399726 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.3:87398835-87398854 | MS.gene014872:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.3:87400266-87400285 | None:intergenic | 25.0% |
| ! | TTTATTGATACTTATCACCA+AGG | + | chr3.3:87399760-87399779 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | - | chr3.3:87399740-87399759 | MS.gene014872:CDS | 25.0% |
| !!! | TTTTTTGGTGATTGAAACTT+TGG | - | chr3.3:87399904-87399923 | MS.gene014872:CDS | 25.0% |
| AGGTGTAGAAGATTAATGAT+AGG | - | chr3.3:87399519-87399538 | MS.gene014872:CDS | 30.0% | |
| ATCACTGTGATTAAAGTTGT+TGG | - | chr3.3:87399387-87399406 | MS.gene014872:intron | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.3:87400269-87400288 | MS.gene014872:CDS | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | - | chr3.3:87399270-87399289 | MS.gene014872:intron | 30.0% | |
| CTTAGTTTCATATTGAACAC+TGG | + | chr3.3:87399272-87399291 | None:intergenic | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | - | chr3.3:87400076-87400095 | MS.gene014872:CDS | 30.0% | |
| TTAGAATACCTGTTATCACA+AGG | + | chr3.3:87398397-87398416 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.3:87400258-87400277 | MS.gene014872:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.3:87400185-87400204 | MS.gene014872:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.3:87398641-87398660 | MS.gene014872:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.3:87400188-87400207 | MS.gene014872:CDS | 30.0% |
| ! | GCAATTCTATTTTACTAGCT+AGG | - | chr3.3:87399324-87399343 | MS.gene014872:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | - | chr3.3:87398764-87398783 | MS.gene014872:CDS | 30.0% |
| !!! | GTACTACTGAATCACTTTTT+TGG | - | chr3.3:87399889-87399908 | MS.gene014872:CDS | 30.0% |
| AAACAACTACACTGCTGTAA+GGG | - | chr3.3:87400166-87400185 | MS.gene014872:CDS | 35.0% | |
| ACTCTTGATCAATGGACAAT+AGG | - | chr3.3:87399499-87399518 | MS.gene014872:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.3:87399983-87400002 | MS.gene014872:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.3:87398609-87398628 | None:intergenic | 35.0% | |
| ATTGAAACTTTGGATGGTGT+AGG | - | chr3.3:87399914-87399933 | MS.gene014872:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.3:87398528-87398547 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.3:87398911-87398930 | MS.gene014872:intron | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr3.3:87398426-87398445 | MS.gene014872:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.3:87398595-87398614 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr3.3:87398833-87398852 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.3:87398386-87398405 | MS.gene014872:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.3:87400368-87400387 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.3:87398654-87398673 | MS.gene014872:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr3.3:87398437-87398456 | MS.gene014872:CDS | 35.0% |
| ! | TTAAGGGCTTTTCTCAGATA+AGG | + | chr3.3:87400426-87400445 | None:intergenic | 35.0% |
| ! | TTGGTGATTGAAACTTTGGA+TGG | - | chr3.3:87399908-87399927 | MS.gene014872:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.3:87398924-87398943 | MS.gene014872:intron | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3.3:87399026-87399045 | MS.gene014872:intron | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr3.3:87398504-87398523 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.3:87400324-87400343 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.3:87400143-87400162 | MS.gene014872:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.3:87399194-87399213 | MS.gene014872:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87400323-87400342 | MS.gene014872:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.3:87400084-87400103 | MS.gene014872:CDS | 40.0% | |
| CAATGCGAATGTTAAGCAAC+TGG | - | chr3.3:87398799-87398818 | MS.gene014872:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.3:87398653-87398672 | MS.gene014872:CDS | 40.0% | |
| GAAACAACTACACTGCTGTA+AGG | - | chr3.3:87400165-87400184 | MS.gene014872:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87400223-87400242 | MS.gene014872:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.3:87400083-87400102 | MS.gene014872:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.3:87399956-87399975 | MS.gene014872:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.3:87399932-87399951 | MS.gene014872:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.3:87399039-87399058 | MS.gene014872:intron | 40.0% | |
| TAAGACTGTCCATGAGCAAA+CGG | - | chr3.3:87400373-87400392 | MS.gene014872:CDS | 40.0% | |
| TGAGTCACACTCTTGATCAA+TGG | - | chr3.3:87399491-87399510 | MS.gene014872:intron | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.3:87400082-87400101 | MS.gene014872:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.3:87400365-87400384 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.3:87399931-87399950 | MS.gene014872:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.3:87398655-87398674 | MS.gene014872:CDS | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr3.3:87398491-87398510 | None:intergenic | 40.0% |
| ! | AGTGGTGGTGAAAAAACTGA+AGG | - | chr3.3:87400296-87400315 | MS.gene014872:CDS | 40.0% |
| ! | GATCAAGAGTGTGACTCATT+TGG | + | chr3.3:87399489-87399508 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+CGG | + | chr3.3:87398623-87398642 | None:intergenic | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.3:87399102-87399121 | MS.gene014872:intron | 40.0% |
| !! | ATTGAACACTGGCTTTGCTA+AGG | + | chr3.3:87399261-87399280 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | - | chr3.3:87398929-87398948 | MS.gene014872:intron | 40.0% |
| !! | GAAAAAACTGAAGGTGCCAT+GGG | - | chr3.3:87400305-87400324 | MS.gene014872:CDS | 40.0% |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | - | chr3.3:87399060-87399079 | MS.gene014872:intron | 40.0% |
| !! | TGAAAAAACTGAAGGTGCCA+TGG | - | chr3.3:87400304-87400323 | MS.gene014872:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+GGG | - | chr3.3:87400374-87400393 | MS.gene014872:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.3:87398552-87398571 | None:intergenic | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.3:87399181-87399200 | MS.gene014872:intron | 45.0% | |
| GGGACTTTATCGTGTAGCAA+AGG | - | chr3.3:87398361-87398380 | MS.gene014872:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3.3:87398902-87398921 | MS.gene014872:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87399989-87400008 | MS.gene014872:CDS | 45.0% | |
| TGCGAATGTTAAGCAACTGG+TGG | - | chr3.3:87398802-87398821 | MS.gene014872:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | - | chr3.3:87398995-87399014 | MS.gene014872:intron | 45.0% |
| ! | TGGACTAATGGTGGTGATAG+TGG | - | chr3.3:87400278-87400297 | MS.gene014872:CDS | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3.3:87398853-87398872 | MS.gene014872:intron | 45.0% |
| !! | ACTAATGGTGGTGATAGTGG+TGG | - | chr3.3:87400281-87400300 | MS.gene014872:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.3:87398539-87398558 | None:intergenic | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr3.3:87398484-87398503 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.3:87400398-87400417 | MS.gene014872:CDS | 50.0% | |
| ATTAATGCCGAGGCAGTACG+CGG | - | chr3.3:87400233-87400252 | MS.gene014872:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.3:87400099-87400118 | MS.gene014872:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.3:87398572-87398591 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.3:87398702-87398721 | None:intergenic | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | - | chr3.3:87399117-87399136 | MS.gene014872:intron | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3.3:87398883-87398902 | MS.gene014872:intron | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | - | chr3.3:87399069-87399088 | MS.gene014872:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.3:87398550-87398569 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3.3:87398874-87398893 | MS.gene014872:intron | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.3:87398551-87398570 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.3:87400110-87400129 | MS.gene014872:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3.3:87398873-87398892 | MS.gene014872:intron | 50.0% | |
| TGGCTAAGAAGAAGGCAGCT+TGG | - | chr3.3:87399110-87399129 | MS.gene014872:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.3:87398704-87398723 | MS.gene014872:CDS | 50.0% |
| ! | ACTTGCTGCTTCCATGACGA+TGG | - | chr3.3:87398688-87398707 | MS.gene014872:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr3.3:87400010-87400029 | MS.gene014872:CDS | 50.0% |
| AACTGGAGAGGGTGACAAGG+AGG | - | chr3.3:87399012-87399031 | MS.gene014872:intron | 55.0% | |
| AAGACGGAGCAGGATTGACC+GGG | + | chr3.3:87398458-87398477 | None:intergenic | 55.0% | |
| ACTGGAGAGGGTGACAAGGA+GGG | - | chr3.3:87399013-87399032 | MS.gene014872:intron | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | + | chr3.3:87398459-87398478 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.3:87400397-87400416 | MS.gene014872:CDS | 55.0% | |
| CTCAGCATCCCTTAGAGCCA+CGG | + | chr3.3:87399176-87399195 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.3:87398545-87398564 | MS.gene014872:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | - | chr3.3:87399120-87399139 | MS.gene014872:intron | 55.0% | |
| GAGAACTGGAGAGGGTGACA+AGG | - | chr3.3:87399009-87399028 | MS.gene014872:intron | 55.0% | |
| GATAAGGCTCCCATCCAAGC+AGG | + | chr3.3:87400410-87400429 | None:intergenic | 55.0% | |
| GCAACATGCCCGTTTGCTCA+TGG | + | chr3.3:87400385-87400404 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.3:87400098-87400117 | MS.gene014872:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+TGG | - | chr3.3:87399090-87399109 | MS.gene014872:intron | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | - | chr3.3:87399150-87399169 | MS.gene014872:intron | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.3:87398474-87398493 | None:intergenic | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | - | chr3.3:87399072-87399091 | MS.gene014872:intron | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | - | chr3.3:87399001-87399020 | MS.gene014872:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.3:87398694-87398713 | MS.gene014872:CDS | 55.0% | |
| TTCGCTGCAGAGAACTGGAG+AGG | - | chr3.3:87399000-87399019 | MS.gene014872:intron | 55.0% | |
| ! | AAGCAACTGGTGGATGTGCC+TGG | - | chr3.3:87398812-87398831 | MS.gene014872:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr3.3:87398691-87398710 | MS.gene014872:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.3:87398565-87398584 | MS.gene014872:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.3:87399165-87399184 | MS.gene014872:intron | 55.0% |
| AAGGCTCCCATCCAAGCAGG+AGG | + | chr3.3:87400407-87400426 | None:intergenic | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | - | chr3.3:87399126-87399145 | MS.gene014872:intron | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | - | chr3.3:87399156-87399175 | MS.gene014872:intron | 60.0% | |
| CGGTCAATCCTGCTCCGTCT+TGG | - | chr3.3:87398457-87398476 | MS.gene014872:CDS | 60.0% | |
| CTCAAGTCCGCGTACTGCCT+CGG | + | chr3.3:87400243-87400262 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | - | chr3.3:87398469-87398488 | MS.gene014872:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | - | chr3.3:87399141-87399160 | MS.gene014872:intron | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | + | chr3.3:87398468-87398487 | None:intergenic | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.3:87399129-87399148 | MS.gene014872:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.3:87399164-87399183 | MS.gene014872:intron | 60.0% |
| CGGGCATGTTGCCTCCTGCT+TGG | - | chr3.3:87400393-87400412 | MS.gene014872:CDS | 65.0% | |
| GAGAGAGGCTGAAGTGGCGG+AGG | - | chr3.3:87399075-87399094 | MS.gene014872:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87398359 | 87400445 | 87398359 | ID=MS.gene014872 |
| chr3.3 | mRNA | 87398359 | 87400445 | 87398359 | ID=MS.gene014872.t1;Parent=MS.gene014872 |
| chr3.3 | exon | 87399513 | 87400445 | 87399513 | ID=MS.gene014872.t1.exon1;Parent=MS.gene014872.t1 |
| chr3.3 | CDS | 87399513 | 87400445 | 87399513 | ID=cds.MS.gene014872.t1;Parent=MS.gene014872.t1 |
| chr3.3 | exon | 87398359 | 87398868 | 87398359 | ID=MS.gene014872.t1.exon2;Parent=MS.gene014872.t1 |
| chr3.3 | CDS | 87398359 | 87398868 | 87398359 | ID=cds.MS.gene014872.t1;Parent=MS.gene014872.t1 |
| Gene Sequence |
| Protein sequence |
