Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012249.t1 | XP_013468625.1 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 3.90E-184 | 654.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012249.t1 | D2XNQ8 | 88.5 | 478 | 51 | 1 | 1 | 474 | 1 | 478 | 1.3e-175 | 617.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012249.t1 | A0A072VLE3 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 2.8e-184 | 654.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012249.t1 | MTR_1g073400 | 96.835 | 474 | 15 | 0 | 1 | 474 | 1 | 474 | 0.0 | 942 |
| MS.gene012249.t1 | MTR_3g106480 | 90.795 | 478 | 40 | 1 | 1 | 474 | 1 | 478 | 0.0 | 891 |
| MS.gene012249.t1 | MTR_1g115145 | 93.528 | 479 | 20 | 4 | 1 | 474 | 1 | 473 | 0.0 | 877 |
| MS.gene012249.t1 | MTR_1g071130 | 90.105 | 475 | 20 | 2 | 1 | 474 | 1 | 449 | 0.0 | 867 |
| MS.gene012249.t1 | MTR_3g106485 | 91.350 | 474 | 41 | 0 | 1 | 474 | 1 | 474 | 0.0 | 864 |
| MS.gene012249.t1 | MTR_3g106420 | 90.795 | 478 | 40 | 1 | 1 | 474 | 3 | 480 | 0.0 | 862 |
| MS.gene012249.t1 | MTR_1g083190 | 89.662 | 474 | 45 | 1 | 1 | 474 | 3 | 472 | 0.0 | 837 |
| MS.gene012249.t1 | MTR_3g106430 | 90.909 | 473 | 43 | 0 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene012249.t1 | MTR_3g106470 | 79.874 | 477 | 36 | 3 | 1 | 473 | 32 | 452 | 0.0 | 723 |
| MS.gene012249.t1 | MTR_8g063830 | 79.741 | 464 | 51 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene012249.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.24e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012249.t1 | AT5G25260 | 74.684 | 474 | 104 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene012249.t1 | AT5G25250 | 75.532 | 470 | 103 | 2 | 1 | 469 | 1 | 459 | 0.0 | 728 |
| MS.gene012249.t1 | AT5G64870 | 71.822 | 472 | 118 | 3 | 2 | 469 | 3 | 463 | 0.0 | 657 |
Find 113 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.1:-6180457 | MS.gene012249:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.1:-6179448 | MS.gene012249:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.1:-6180129 | MS.gene012249:CDS |
| TGGAATAACCGAAGGTTCTA+TGG | 0.272931 | 8.1:-6179414 | MS.gene012249:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.1:-6179521 | MS.gene012249:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.1:-6180456 | MS.gene012249:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.1:-6180369 | MS.gene012249:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.1:+6179443 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.1:-6180748 | MS.gene012249:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.1:-6179541 | MS.gene012249:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.1:-6179775 | MS.gene012249:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.1:-6179321 | MS.gene012249:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.1:-6180267 | MS.gene012249:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.1:-6180529 | MS.gene012249:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.1:-6179440 | MS.gene012249:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.1:+6180882 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.1:+6180888 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.1:-6180907 | MS.gene012249:CDS |
| CAACGCGAATGTTAAGCAAT+TGG | 0.420451 | 8.1:-6180494 | MS.gene012249:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.1:+6180710 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.1:-6180528 | MS.gene012249:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.1:+6179406 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.1:-6180867 | MS.gene012249:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.1:-6180942 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.1:-6179608 | MS.gene012249:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.474006 | 8.1:-6179344 | MS.gene012249:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.1:-6179723 | MS.gene012249:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.1:+6180698 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.1:-6180176 | MS.gene012249:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.1:+6180588 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.1:-6180303 | MS.gene012249:CDS |
| CGCGAATGTTAAGCAATTGG+TGG | 0.500388 | 8.1:-6180491 | MS.gene012249:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.1:-6180128 | MS.gene012249:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.1:-6179325 | MS.gene012249:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.1:-6180420 | MS.gene012249:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.1:-6180599 | MS.gene012249:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.1:-6180382 | MS.gene012249:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.1:-6180298 | MS.gene012249:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.1:-6180254 | MS.gene012249:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.1:-6180368 | MS.gene012249:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 8.1:+6179336 | None:intergenic |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.1:-6180652 | MS.gene012249:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.1:-6179320 | MS.gene012249:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.1:-6179395 | MS.gene012249:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.1:-6180481 | MS.gene012249:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.1:-6180152 | MS.gene012249:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.1:-6179437 | MS.gene012249:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.1:-6179501 | MS.gene012249:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.1:-6180280 | MS.gene012249:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.1:-6180164 | MS.gene012249:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.1:-6180203 | MS.gene012249:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.1:-6180901 | MS.gene012249:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.1:-6180824 | MS.gene012249:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.1:+6179311 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.1:+6180906 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.1:-6180218 | MS.gene012249:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.1:-6179774 | MS.gene012249:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.1:+6180745 | None:intergenic |
| AGTATTTGGACTAATGGAGG+TGG | 0.568629 | 8.1:-6179434 | MS.gene012249:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.1:-6179563 | MS.gene012249:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.1:-6180605 | MS.gene012249:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.570732 | 8.1:-6179413 | MS.gene012249:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.1:-6179783 | MS.gene012249:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.1:+6180805 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.1:+6180838 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.1:+6180812 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.1:-6179402 | MS.gene012249:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.1:-6179696 | MS.gene012249:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.1:-6179596 | MS.gene012249:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.1:+6180701 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.1:-6179540 | MS.gene012249:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.1:+6180674 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.1:-6180281 | MS.gene012249:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.1:-6180224 | MS.gene012249:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.1:-6180440 | MS.gene012249:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.1:+6180741 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.1:+6180675 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.1:-6179717 | MS.gene012249:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.1:+6180792 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.1:-6180640 | MS.gene012249:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.1:+6180899 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.1:-6180099 | MS.gene012249:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.1:-6180364 | MS.gene012249:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.1:-6180112 | MS.gene012249:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.1:-6180391 | MS.gene012249:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.1:-6180279 | MS.gene012249:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.1:+6180822 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.1:-6180302 | MS.gene012249:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.1:-6180941 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.1:+6180463 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.1:-6180419 | MS.gene012249:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.1:+6180757 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.1:-6179483 | MS.gene012249:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.1:-6180284 | MS.gene012249:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.1:-6180107 | MS.gene012249:CDS |
| TGGACAGTCTTAAAGAGAGG+TGG | 0.649808 | 8.1:+6179356 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.1:-6180023 | MS.gene012249:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.1:-6180665 | MS.gene012249:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.1:-6179518 | MS.gene012249:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.1:-6180183 | MS.gene012249:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.1:+6180724 | None:intergenic |
| AATGGAGGTGGAATAACCGA+AGG | 0.661598 | 8.1:-6179422 | MS.gene012249:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.1:-6180137 | MS.gene012249:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.1:+6179314 | None:intergenic |
| TCATGGACAGTCTTAAAGAG+AGG | 0.674719 | 8.1:+6179353 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.1:-6180410 | MS.gene012249:CDS |
| ATTAATGCTGAGGCAGTACG+CGG | 0.685872 | 8.1:-6179473 | MS.gene012249:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.1:+6180673 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.1:-6180173 | MS.gene012249:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.1:-6180188 | MS.gene012249:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.1:+6180839 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.1:+6179529 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.1:+6180605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.1:6180409-6180428 | MS.gene012249:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.1:6179767-6179786 | MS.gene012249:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr8.1:6180296-6180315 | MS.gene012249:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.1:6179766-6179785 | MS.gene012249:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.1:6180365-6180384 | MS.gene012249:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.1:6180783-6180802 | MS.gene012249:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.1:6180783-6180802 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.1:6179528-6179547 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.1:6180775-6180794 | MS.gene012249:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.1:6180421-6180440 | MS.gene012249:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.1:6180786-6180805 | MS.gene012249:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.1:6180384-6180403 | MS.gene012249:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.1:6180200-6180219 | MS.gene012249:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.1:6179763-6179782 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.1:6179356-6179375 | MS.gene012249:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.1:6180231-6180250 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.1:6180702-6180721 | MS.gene012249:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.1:6180705-6180724 | MS.gene012249:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.1:6179855-6179874 | MS.gene012249:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.1:6179344-6179363 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.1:6179551-6179570 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.1:6180601-6180620 | MS.gene012249:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.1:6179552-6179571 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.1:6180593-6180612 | MS.gene012249:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.1:6179558-6179577 | MS.gene012249:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.1:6179525-6179544 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.1:6179553-6179572 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.1:6180820-6180839 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.1:6179367-6179386 | MS.gene012249:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.1:6179458-6179477 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.1:6180220-6180239 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.1:6179854-6179873 | MS.gene012249:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | + | chr8.1:6180931-6180950 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.1:6179695-6179714 | MS.gene012249:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.1:6179694-6179713 | MS.gene012249:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.1:6179990-6180009 | MS.gene012249:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.1:6180425-6180444 | MS.gene012249:CDS | 35.0% |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.1:6180500-6180519 | MS.gene012249:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.1:6180821-6180840 | MS.gene012249:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.1:6180660-6180679 | MS.gene012249:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+TGG | - | chr8.1:6180789-6180808 | MS.gene012249:CDS | 40.0% | |
| CAACGCGAATGTTAAGCAAT+TGG | - | chr8.1:6179729-6179748 | MS.gene012249:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.1:6180697-6180716 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.1:6179921-6179940 | MS.gene012249:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.1:6180740-6180759 | MS.gene012249:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.1:6180600-6180619 | MS.gene012249:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.1:6179841-6179860 | MS.gene012249:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.1:6180810-6180829 | MS.gene012249:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.1:6180431-6180450 | MS.gene012249:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.1:6179969-6179988 | MS.gene012249:intron | 40.0% | |
| TCATGGACAGTCTTAAAGAG+AGG | + | chr8.1:6180873-6180892 | None:intergenic | 40.0% | |
| TGGAATAACCGAAGGTTCTA+TGG | - | chr8.1:6180809-6180828 | MS.gene012249:CDS | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.1:6179634-6179653 | MS.gene012249:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.1:6179421-6179440 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.1:6179859-6179878 | MS.gene012249:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.1:6179638-6179657 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.1:6180683-6180702 | MS.gene012249:CDS | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr8.1:6180879-6180898 | MS.gene012249:CDS | 45.0% | |
| AATGGAGGTGGAATAACCGA+AGG | - | chr8.1:6180801-6180820 | MS.gene012249:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.1:6179485-6179504 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.1:6179434-6179453 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.1:6180828-6180847 | MS.gene012249:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+CGG | - | chr8.1:6180750-6180769 | MS.gene012249:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.1:6179571-6179590 | MS.gene012249:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.1:6179920-6179939 | MS.gene012249:intron | 45.0% | |
| CGCGAATGTTAAGCAATTGG+TGG | - | chr8.1:6179732-6179751 | MS.gene012249:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.1:6179583-6179602 | MS.gene012249:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.1:6179999-6180018 | MS.gene012249:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.1:6180615-6180634 | MS.gene012249:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.1:6180449-6180468 | MS.gene012249:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.1:6180627-6180646 | MS.gene012249:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.1:6179832-6179851 | MS.gene012249:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.1:6179316-6179335 | MS.gene012249:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.1:6180506-6180525 | MS.gene012249:CDS | 45.0% | |
| TGGACAGTCTTAAAGAGAGG+TGG | + | chr8.1:6180870-6180889 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.1:6180722-6180741 | MS.gene012249:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.1:6180448-6180467 | MS.gene012249:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.1:6179956-6179975 | MS.gene012249:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.1:6179320-6179339 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.1:6180035-6180054 | MS.gene012249:CDS | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.1:6179783-6179802 | MS.gene012249:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.1:6180095-6180114 | MS.gene012249:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.1:6180247-6180266 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.1:6179469-6179488 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.1:6179388-6179407 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.1:6179387-6179406 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.1:6179414-6179433 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.1:6180124-6180143 | MS.gene012249:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.1:6180903-6180922 | MS.gene012249:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.1:6179516-6179535 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.1:6180111-6180130 | MS.gene012249:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.1:6180440-6180459 | MS.gene012249:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.1:6179475-6179494 | MS.gene012249:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.1:6180682-6180701 | MS.gene012249:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.1:6179813-6179832 | MS.gene012249:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.1:6180915-6180934 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr8.1:6180890-6180909 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.1:6179804-6179823 | MS.gene012249:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.1:6179322-6179341 | MS.gene012249:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.1:6179624-6179643 | MS.gene012249:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.1:6179803-6179822 | MS.gene012249:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.1:6179742-6179761 | MS.gene012249:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.1:6180094-6180113 | MS.gene012249:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.1:6180047-6180066 | MS.gene012249:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.1:6180527-6180546 | MS.gene012249:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.1:6179449-6179468 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.1:6180005-6180024 | MS.gene012249:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.1:6180912-6180931 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.1:6180086-6180105 | MS.gene012249:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.1:6180902-6180921 | MS.gene012249:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.1:6179944-6179963 | MS.gene012249:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.1:6179502-6179521 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.1:6179338-6179357 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.1:6179943-6179962 | MS.gene012249:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.1:6180116-6180135 | MS.gene012249:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.1:6179481-6179500 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.1:6180020-6180039 | MS.gene012249:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.1:6179925-6179944 | MS.gene012249:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.1:6180040-6180059 | MS.gene012249:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.1:6179327-6179346 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.1:6180059-6180078 | MS.gene012249:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.1:6180050-6180069 | MS.gene012249:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.1:6179404-6179423 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.1:6179399-6179418 | MS.gene012249:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.1:6180898-6180917 | MS.gene012249:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.1:6179621-6179640 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.1:6179618-6179637 | MS.gene012249:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.1:6179939-6179958 | MS.gene012249:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.1:6180071-6180090 | MS.gene012249:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.1:6179942-6179961 | MS.gene012249:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6179295 | 6180950 | 6179295 | ID=MS.gene012249 |
| chr8.1 | mRNA | 6179295 | 6180950 | 6179295 | ID=MS.gene012249.t1;Parent=MS.gene012249 |
| chr8.1 | exon | 6180024 | 6180950 | 6180024 | ID=MS.gene012249.t1.exon1;Parent=MS.gene012249.t1 |
| chr8.1 | CDS | 6180024 | 6180950 | 6180024 | ID=cds.MS.gene012249.t1;Parent=MS.gene012249.t1 |
| chr8.1 | exon | 6179295 | 6179792 | 6179295 | ID=MS.gene012249.t1.exon2;Parent=MS.gene012249.t1 |
| chr8.1 | CDS | 6179295 | 6179792 | 6179295 | ID=cds.MS.gene012249.t1;Parent=MS.gene012249.t1 |
| Gene Sequence |
| Protein sequence |
