Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051841.t1 | XP_013468625.1 | 94.3 | 474 | 27 | 0 | 1 | 474 | 1 | 474 | 6.70E-184 | 653.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051841.t1 | D2XNQ8 | 88.3 | 478 | 52 | 1 | 1 | 474 | 1 | 478 | 2.2e-175 | 616.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051841.t1 | A0A072VLE3 | 94.3 | 474 | 27 | 0 | 1 | 474 | 1 | 474 | 4.8e-184 | 653.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051839 | MS.gene051841 | 0.987577 | 9.19E-171 | -1.69E-46 |
| MS.gene051841 | MS.gene24858 | 0.970158 | 3.41E-131 | -1.69E-46 |
| MS.gene051841 | MS.gene24860 | 0.970334 | 1.85E-131 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051841.t1 | MTR_1g073400 | 96.624 | 474 | 16 | 0 | 1 | 474 | 1 | 474 | 0.0 | 892 |
| MS.gene051841.t1 | MTR_3g106480 | 90.586 | 478 | 41 | 1 | 1 | 474 | 1 | 478 | 0.0 | 889 |
| MS.gene051841.t1 | MTR_1g115145 | 93.319 | 479 | 21 | 4 | 1 | 474 | 1 | 473 | 0.0 | 876 |
| MS.gene051841.t1 | MTR_1g071130 | 89.895 | 475 | 21 | 2 | 1 | 474 | 1 | 449 | 0.0 | 865 |
| MS.gene051841.t1 | MTR_3g106485 | 91.139 | 474 | 42 | 0 | 1 | 474 | 1 | 474 | 0.0 | 863 |
| MS.gene051841.t1 | MTR_3g106420 | 90.586 | 478 | 41 | 1 | 1 | 474 | 3 | 480 | 0.0 | 860 |
| MS.gene051841.t1 | MTR_1g083190 | 89.451 | 474 | 46 | 1 | 1 | 474 | 3 | 472 | 0.0 | 836 |
| MS.gene051841.t1 | MTR_3g106430 | 90.909 | 473 | 43 | 0 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene051841.t1 | MTR_3g106470 | 79.874 | 477 | 36 | 3 | 1 | 473 | 32 | 452 | 0.0 | 723 |
| MS.gene051841.t1 | MTR_8g063830 | 79.741 | 464 | 51 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene051841.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.18e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051841.t1 | AT5G25260 | 74.684 | 474 | 104 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene051841.t1 | AT5G25250 | 75.532 | 470 | 103 | 2 | 1 | 469 | 1 | 459 | 0.0 | 728 |
| MS.gene051841.t1 | AT5G64870 | 71.822 | 472 | 118 | 3 | 2 | 469 | 3 | 463 | 0.0 | 656 |
Find 113 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.2:-6789007 | MS.gene051841:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.2:-6787998 | MS.gene051841:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.2:-6788679 | MS.gene051841:CDS |
| TGGAATAACCGAAGGTTCTA+TGG | 0.272931 | 8.2:-6787964 | MS.gene051841:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.2:-6788071 | MS.gene051841:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.2:-6789006 | MS.gene051841:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.2:-6788919 | MS.gene051841:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.2:+6787993 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.2:-6789298 | MS.gene051841:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.2:-6788091 | MS.gene051841:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.2:-6788325 | MS.gene051841:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.2:-6787871 | MS.gene051841:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.2:-6788817 | MS.gene051841:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.2:-6789079 | MS.gene051841:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.2:-6787990 | MS.gene051841:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.2:+6789432 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.2:+6789438 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.2:-6789457 | MS.gene051841:CDS |
| CAACGCGAATGTTAAGCAAT+TGG | 0.420451 | 8.2:-6789044 | MS.gene051841:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.2:+6789260 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.2:-6789078 | MS.gene051841:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.2:+6787956 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.2:-6789417 | MS.gene051841:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.2:-6789492 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.2:-6788158 | MS.gene051841:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.474006 | 8.2:-6787894 | MS.gene051841:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.2:-6788273 | MS.gene051841:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.2:+6789248 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.2:-6788726 | MS.gene051841:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.2:+6789138 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.2:-6788853 | MS.gene051841:CDS |
| CGCGAATGTTAAGCAATTGG+TGG | 0.500388 | 8.2:-6789041 | MS.gene051841:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.2:-6788678 | MS.gene051841:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.2:-6787875 | MS.gene051841:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.2:-6788970 | MS.gene051841:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.2:-6789149 | MS.gene051841:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.2:-6788932 | MS.gene051841:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.2:-6788848 | MS.gene051841:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.2:-6788804 | MS.gene051841:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.2:-6788918 | MS.gene051841:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 8.2:+6787886 | None:intergenic |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.2:-6789202 | MS.gene051841:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.2:-6787870 | MS.gene051841:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.2:-6787945 | MS.gene051841:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.2:-6789031 | MS.gene051841:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.2:-6788702 | MS.gene051841:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.2:-6787987 | MS.gene051841:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.2:-6788051 | MS.gene051841:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.2:-6788830 | MS.gene051841:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.2:-6788714 | MS.gene051841:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.2:-6788753 | MS.gene051841:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.2:-6789451 | MS.gene051841:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.2:-6789374 | MS.gene051841:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.2:+6787861 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.2:+6789456 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.2:-6788768 | MS.gene051841:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.2:-6788324 | MS.gene051841:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.2:+6789295 | None:intergenic |
| AGTATTTGGACTAATGGAGG+TGG | 0.568629 | 8.2:-6787984 | MS.gene051841:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.2:-6788113 | MS.gene051841:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.2:-6789155 | MS.gene051841:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.570732 | 8.2:-6787963 | MS.gene051841:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.2:-6788333 | MS.gene051841:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.2:+6789355 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.2:+6789388 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.2:+6789362 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.2:-6787952 | MS.gene051841:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.2:-6788246 | MS.gene051841:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.2:-6788146 | MS.gene051841:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.2:+6789251 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.2:-6788090 | MS.gene051841:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.2:+6789224 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.2:-6788831 | MS.gene051841:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.2:-6788774 | MS.gene051841:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.2:-6788990 | MS.gene051841:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.2:+6789291 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.2:+6789225 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.2:-6788267 | MS.gene051841:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.2:+6789342 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.2:-6789190 | MS.gene051841:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.2:+6789449 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.2:-6788649 | MS.gene051841:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.2:-6788914 | MS.gene051841:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.2:-6788662 | MS.gene051841:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.2:-6788941 | MS.gene051841:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.2:-6788829 | MS.gene051841:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.2:+6789372 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.2:-6788852 | MS.gene051841:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.2:-6789491 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.2:+6789013 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.2:-6788969 | MS.gene051841:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.2:+6789307 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.2:-6788033 | MS.gene051841:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.2:-6788834 | MS.gene051841:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.2:-6788657 | MS.gene051841:CDS |
| TGGACAGTCTTAAAGAGAGG+TGG | 0.649808 | 8.2:+6787906 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.2:-6788573 | MS.gene051841:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.2:-6789215 | MS.gene051841:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.2:-6788068 | MS.gene051841:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.2:-6788733 | MS.gene051841:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.2:+6789274 | None:intergenic |
| AATGGAGGTGGAATAACCGA+AGG | 0.661598 | 8.2:-6787972 | MS.gene051841:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.2:-6788687 | MS.gene051841:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.2:+6787864 | None:intergenic |
| TCATGGACAGTCTTAAAGAG+AGG | 0.674719 | 8.2:+6787903 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.2:-6788960 | MS.gene051841:CDS |
| ATTAATGCTGAGGCAGTACG+CGG | 0.685872 | 8.2:-6788023 | MS.gene051841:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.2:+6789223 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.2:-6788723 | MS.gene051841:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.2:-6788738 | MS.gene051841:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.2:+6789389 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.2:+6788079 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.2:+6789155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.2:6788959-6788978 | MS.gene051841:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.2:6788317-6788336 | MS.gene051841:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.2:6788316-6788335 | MS.gene051841:CDS | 20.0% |
| !!! | ATTAATACTTCAATGTCTTT+TGG | - | chr8.2:6788846-6788865 | MS.gene051841:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.2:6788915-6788934 | MS.gene051841:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.2:6789333-6789352 | MS.gene051841:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.2:6789333-6789352 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.2:6788078-6788097 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.2:6789325-6789344 | MS.gene051841:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.2:6788971-6788990 | MS.gene051841:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.2:6789336-6789355 | MS.gene051841:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.2:6788934-6788953 | MS.gene051841:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.2:6788750-6788769 | MS.gene051841:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.2:6788313-6788332 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.2:6787906-6787925 | MS.gene051841:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.2:6788781-6788800 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.2:6789252-6789271 | MS.gene051841:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.2:6789255-6789274 | MS.gene051841:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.2:6788405-6788424 | MS.gene051841:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.2:6787894-6787913 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.2:6788101-6788120 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.2:6789151-6789170 | MS.gene051841:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.2:6788102-6788121 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.2:6789143-6789162 | MS.gene051841:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.2:6788108-6788127 | MS.gene051841:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.2:6788075-6788094 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.2:6788103-6788122 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.2:6789370-6789389 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.2:6787917-6787936 | MS.gene051841:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.2:6788008-6788027 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.2:6788770-6788789 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.2:6788404-6788423 | MS.gene051841:intron | 35.0% |
| ! | TTAAGCACTTTTGTCGGATA+AGG | + | chr8.2:6789481-6789500 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.2:6788245-6788264 | MS.gene051841:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.2:6788244-6788263 | MS.gene051841:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.2:6788540-6788559 | MS.gene051841:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.2:6788975-6788994 | MS.gene051841:CDS | 35.0% |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.2:6789050-6789069 | MS.gene051841:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.2:6789371-6789390 | MS.gene051841:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.2:6789210-6789229 | MS.gene051841:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+TGG | - | chr8.2:6789339-6789358 | MS.gene051841:CDS | 40.0% | |
| CAACGCGAATGTTAAGCAAT+TGG | - | chr8.2:6788279-6788298 | MS.gene051841:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.2:6789247-6789266 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.2:6788471-6788490 | MS.gene051841:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.2:6789290-6789309 | MS.gene051841:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.2:6789150-6789169 | MS.gene051841:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.2:6788391-6788410 | MS.gene051841:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.2:6789360-6789379 | MS.gene051841:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.2:6788981-6789000 | MS.gene051841:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.2:6788519-6788538 | MS.gene051841:intron | 40.0% | |
| TCATGGACAGTCTTAAAGAG+AGG | + | chr8.2:6789423-6789442 | None:intergenic | 40.0% | |
| TGGAATAACCGAAGGTTCTA+TGG | - | chr8.2:6789359-6789378 | MS.gene051841:CDS | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.2:6788184-6788203 | MS.gene051841:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.2:6787971-6787990 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.2:6788409-6788428 | MS.gene051841:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.2:6788188-6788207 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.2:6789233-6789252 | MS.gene051841:CDS | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr8.2:6789429-6789448 | MS.gene051841:CDS | 45.0% | |
| AATGGAGGTGGAATAACCGA+AGG | - | chr8.2:6789351-6789370 | MS.gene051841:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.2:6788035-6788054 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.2:6787984-6788003 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.2:6789378-6789397 | MS.gene051841:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+CGG | - | chr8.2:6789300-6789319 | MS.gene051841:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.2:6788121-6788140 | MS.gene051841:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.2:6788470-6788489 | MS.gene051841:intron | 45.0% | |
| CGCGAATGTTAAGCAATTGG+TGG | - | chr8.2:6788282-6788301 | MS.gene051841:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.2:6788133-6788152 | MS.gene051841:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.2:6788549-6788568 | MS.gene051841:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.2:6789165-6789184 | MS.gene051841:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.2:6788999-6789018 | MS.gene051841:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.2:6789177-6789196 | MS.gene051841:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.2:6788382-6788401 | MS.gene051841:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.2:6787866-6787885 | MS.gene051841:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.2:6789056-6789075 | MS.gene051841:CDS | 45.0% | |
| TGGACAGTCTTAAAGAGAGG+TGG | + | chr8.2:6789420-6789439 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.2:6789272-6789291 | MS.gene051841:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.2:6788998-6789017 | MS.gene051841:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.2:6788506-6788525 | MS.gene051841:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.2:6787870-6787889 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.2:6788585-6788604 | MS.gene051841:CDS | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.2:6788333-6788352 | MS.gene051841:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.2:6788645-6788664 | MS.gene051841:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.2:6788797-6788816 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.2:6788019-6788038 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.2:6787938-6787957 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.2:6787937-6787956 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.2:6787964-6787983 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.2:6788674-6788693 | MS.gene051841:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.2:6789453-6789472 | MS.gene051841:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.2:6788066-6788085 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.2:6788661-6788680 | MS.gene051841:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.2:6788990-6789009 | MS.gene051841:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.2:6788025-6788044 | MS.gene051841:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.2:6789232-6789251 | MS.gene051841:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.2:6788363-6788382 | MS.gene051841:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.2:6789465-6789484 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr8.2:6789440-6789459 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.2:6788354-6788373 | MS.gene051841:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.2:6787872-6787891 | MS.gene051841:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.2:6788174-6788193 | MS.gene051841:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.2:6788353-6788372 | MS.gene051841:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.2:6788292-6788311 | MS.gene051841:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.2:6788644-6788663 | MS.gene051841:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.2:6788597-6788616 | MS.gene051841:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.2:6789077-6789096 | MS.gene051841:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.2:6787999-6788018 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.2:6788555-6788574 | MS.gene051841:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.2:6789462-6789481 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.2:6788636-6788655 | MS.gene051841:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.2:6789452-6789471 | MS.gene051841:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.2:6788494-6788513 | MS.gene051841:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.2:6788052-6788071 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.2:6787888-6787907 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.2:6788493-6788512 | MS.gene051841:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.2:6788666-6788685 | MS.gene051841:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.2:6788031-6788050 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.2:6788570-6788589 | MS.gene051841:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.2:6788475-6788494 | MS.gene051841:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.2:6788590-6788609 | MS.gene051841:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.2:6787877-6787896 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.2:6788609-6788628 | MS.gene051841:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.2:6788600-6788619 | MS.gene051841:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.2:6787954-6787973 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.2:6787949-6787968 | MS.gene051841:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.2:6789448-6789467 | MS.gene051841:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.2:6788171-6788190 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.2:6788168-6788187 | MS.gene051841:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.2:6788489-6788508 | MS.gene051841:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.2:6788621-6788640 | MS.gene051841:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.2:6788492-6788511 | MS.gene051841:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6787845 | 6789500 | 6787845 | ID=MS.gene051841 |
| chr8.2 | mRNA | 6787845 | 6789500 | 6787845 | ID=MS.gene051841.t1;Parent=MS.gene051841 |
| chr8.2 | exon | 6788574 | 6789500 | 6788574 | ID=MS.gene051841.t1.exon1;Parent=MS.gene051841.t1 |
| chr8.2 | CDS | 6788574 | 6789500 | 6788574 | ID=cds.MS.gene051841.t1;Parent=MS.gene051841.t1 |
| chr8.2 | exon | 6787845 | 6788342 | 6787845 | ID=MS.gene051841.t1.exon2;Parent=MS.gene051841.t1 |
| chr8.2 | CDS | 6787845 | 6788342 | 6787845 | ID=cds.MS.gene051841.t1;Parent=MS.gene051841.t1 |
| Gene Sequence |
| Protein sequence |
