Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80219.t1 | XP_003603337.2 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 9.10E-197 | 696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80219.t1 | D2XNQ8 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 2.2e-199 | 696.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80219.t1 | G7JAE9 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 6.5e-197 | 696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80219.t1 | MTR_3g106480 | 99.582 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 0.0 | 970 |
| MS.gene80219.t1 | MTR_3g106485 | 94.142 | 478 | 24 | 2 | 1 | 478 | 1 | 474 | 0.0 | 887 |
| MS.gene80219.t1 | MTR_3g106420 | 91.841 | 478 | 39 | 0 | 1 | 478 | 3 | 480 | 0.0 | 877 |
| MS.gene80219.t1 | MTR_1g073400 | 90.795 | 478 | 40 | 1 | 1 | 478 | 1 | 474 | 0.0 | 847 |
| MS.gene80219.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 1 | 478 | 1 | 473 | 0.0 | 844 |
| MS.gene80219.t1 | MTR_1g083190 | 89.749 | 478 | 41 | 1 | 1 | 478 | 3 | 472 | 0.0 | 842 |
| MS.gene80219.t1 | MTR_3g106430 | 92.034 | 477 | 34 | 2 | 1 | 477 | 1 | 473 | 0.0 | 840 |
| MS.gene80219.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 837 |
| MS.gene80219.t1 | MTR_3g106470 | 80.922 | 477 | 35 | 2 | 1 | 477 | 32 | 452 | 0.0 | 737 |
| MS.gene80219.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 1 | 464 | 1 | 425 | 0.0 | 668 |
| MS.gene80219.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 8.63e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80219.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 1 | 473 | 1 | 461 | 0.0 | 725 |
| MS.gene80219.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 715 |
| MS.gene80219.t1 | AT5G64870 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 660 |
Find 121 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.052081 | 3.4:-92868446 | MS.gene80219:CDS |
| AATTGAACCAATTCGGATTA+TGG | 0.158331 | 3.4:-92868510 | MS.gene80219:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.4:-92866816 | MS.gene80219:CDS |
| CTGCTAAAGCCGTGGCTCTA+AGG | 0.254538 | 3.4:-92868117 | MS.gene80219:CDS |
| CATGAATATTTCTCATATTT+GGG | 0.273088 | 3.4:-92868445 | MS.gene80219:CDS |
| GGCTGGAGAAGGTGAGAAAC+AGG | 0.294061 | 3.4:-92868269 | MS.gene80219:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.4:-92868370 | MS.gene80219:CDS |
| TCTAGGTACAAGAGGCTAAC+TGG | 0.321242 | 3.4:-92867143 | MS.gene80219:intron |
| ACTAATGGTGGTGATAATAA+TGG | 0.334485 | 3.4:-92866793 | MS.gene80219:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.339850 | 3.4:+92868645 | None:intergenic |
| CAACTTGAATTGAACCAATT+CGG | 0.339963 | 3.4:-92868517 | MS.gene80219:CDS |
| CATGTTGCCTCCGGCTTGGA+TGG | 0.343865 | 3.4:-92866677 | MS.gene80219:CDS |
| CAATGCCAATGTTAAGCAAT+TGG | 0.346020 | 3.4:-92868482 | MS.gene80219:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.4:-92866889 | MS.gene80219:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.4:-92868357 | MS.gene80219:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.360315 | 3.4:+92868675 | None:intergenic |
| TCAGAATACCTTGTGATAAC+TGG | 0.379855 | 3.4:-92868895 | MS.gene80219:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.4:+92866811 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.4:-92866808 | MS.gene80219:CDS |
| AAGCTTTACATCGTCAATTC+CGG | 0.391365 | 3.4:+92868870 | None:intergenic |
| TGTAAATCCATAATCCGAAT+TGG | 0.394399 | 3.4:+92868503 | None:intergenic |
| CTCCCTGCCGTCTTCACAAT+AGG | 0.407375 | 3.4:-92868736 | MS.gene80219:CDS |
| AAATTAGTTTGGCATATTTG+AGG | 0.439485 | 3.4:+92868686 | None:intergenic |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.4:-92868640 | MS.gene80219:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.4:-92867091 | MS.gene80219:CDS |
| CTAATGGTGGTGATAATAAT+GGG | 0.463009 | 3.4:-92866792 | MS.gene80219:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.4:-92868356 | MS.gene80219:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.4:-92866770 | MS.gene80219:CDS |
| AAACCAATATCAACATGTAC+CGG | 0.488341 | 3.4:-92868930 | None:intergenic |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.4:+92866834 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.4:-92866700 | MS.gene80219:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.493478 | 3.4:-92868587 | MS.gene80219:CDS |
| TGCTAAAGCCGTGGCTCTAA+GGG | 0.495165 | 3.4:-92868116 | MS.gene80219:CDS |
| GGAACAACTACACAGCTGTA+AGG | 0.502820 | 3.4:-92866909 | MS.gene80219:CDS |
| CTAGGTACAAGAGGCTAACT+GGG | 0.505098 | 3.4:-92867142 | MS.gene80219:intron |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.4:-92868408 | MS.gene80219:CDS |
| GGACCTATTGTGAAGACGGC+AGG | 0.507327 | 3.4:+92868733 | None:intergenic |
| ATGTTGCCTCCGGCTTGGAT+GGG | 0.512421 | 3.4:-92866676 | MS.gene80219:CDS |
| TTGGACAATGGCGGCTCAAG+TGG | 0.512749 | 3.4:-92868152 | MS.gene80219:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.4:-92868286 | MS.gene80219:CDS |
| CAGGCATGTTGCCTCCGGCT+TGG | 0.517134 | 3.4:-92866681 | MS.gene80219:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.4:+92866692 | None:intergenic |
| AGCTTTAAGCTTCTCAGTAG+TGG | 0.525292 | 3.4:+92868051 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.4:-92868469 | MS.gene80219:CDS |
| GGCTCAAGTGGCTGAGCTTG+AGG | 0.528141 | 3.4:-92868140 | MS.gene80219:CDS |
| GCAAACAGGCATGTTGCCTC+CGG | 0.529165 | 3.4:-92866686 | MS.gene80219:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.4:-92866805 | MS.gene80219:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.4:-92866769 | MS.gene80219:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92866753 | None:intergenic |
| ATCCACCAATTGCTTAACAT+TGG | 0.540817 | 3.4:+92868477 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.541119 | 3.4:-92866931 | MS.gene80219:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.542934 | 3.4:-92868812 | MS.gene80219:CDS |
| ATTCAACACTAGCTTTGCTA+AGG | 0.544556 | 3.4:+92868023 | None:intergenic |
| TGAGAGGTCGAAGACGGTGC+AGG | 0.545239 | 3.4:+92868816 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.4:-92866976 | MS.gene80219:CDS |
| ACTTCGAAGGTGTAATTCAC+CGG | 0.552954 | 3.4:+92868793 | None:intergenic |
| AAGACGGTGCAGGATTGACC+CGG | 0.554154 | 3.4:+92868826 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 3.4:-92868206 | MS.gene80219:CDS |
| GAAGAAAGCTGCTTGGACAA+TGG | 0.561707 | 3.4:-92868164 | MS.gene80219:CDS |
| AGCTTTCTTCTTAGCCAACT+CGG | 0.562096 | 3.4:+92868177 | None:intergenic |
| TAGTGTTGAATATGACACTA+AGG | 0.562966 | 3.4:-92868011 | MS.gene80219:intron |
| TAAAGCTTGAAAAGAAAGCA+TGG | 0.566286 | 3.4:-92868855 | MS.gene80219:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.4:+92868745 | None:intergenic |
| TGGCTAAGAAGAAAGCTGCT+TGG | 0.570632 | 3.4:-92868171 | MS.gene80219:CDS |
| GGCTGAGGCTAATTCCGAGT+TGG | 0.571047 | 3.4:-92868191 | MS.gene80219:CDS |
| GGTAAAGATCCCATCCAAGC+CGG | 0.577737 | 3.4:+92866667 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92866751 | MS.gene80219:CDS |
| TACCTTGTGATAACTGGCGC+CGG | 0.580254 | 3.4:-92868889 | MS.gene80219:CDS |
| TGCCAATGTTAAGCAATTGG+TGG | 0.581862 | 3.4:-92868479 | MS.gene80219:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.4:-92866964 | MS.gene80219:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.4:-92868291 | MS.gene80219:CDS |
| CTGGATGCTCTAGGTACAAG+AGG | 0.587653 | 3.4:-92867151 | MS.gene80219:intron |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.4:-92868212 | MS.gene80219:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.590772 | 3.4:+92868108 | None:intergenic |
| AGGTGTAATTCACCGGTGAG+AGG | 0.592989 | 3.4:+92868800 | None:intergenic |
| GAACAACTACACAGCTGTAA+GGG | 0.593770 | 3.4:-92866908 | MS.gene80219:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.596495 | 3.4:+92868780 | None:intergenic |
| CCTCGTTGCTTCAATGACAA+TGG | 0.596534 | 3.4:-92868593 | MS.gene80219:CDS |
| TTAGTTTGGCATATTTGAGG+AGG | 0.598221 | 3.4:+92868689 | None:intergenic |
| ACGAGGACCTATTGTGAAGA+CGG | 0.598551 | 3.4:+92868729 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.4:-92866975 | MS.gene80219:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.4:-92867085 | MS.gene80219:CDS |
| GCGATGCAGAGGGCTGGAGA+AGG | 0.602267 | 3.4:-92868280 | MS.gene80219:CDS |
| GACCTATTGTGAAGACGGCA+GGG | 0.603396 | 3.4:+92868734 | None:intergenic |
| TAATGGTGGTGATAATAATG+GGG | 0.604276 | 3.4:-92866791 | MS.gene80219:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.606472 | 3.4:+92868662 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 3.4:-92868628 | MS.gene80219:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 3.4:-92868087 | MS.gene80219:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.4:-92868100 | MS.gene80219:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.4:-92868379 | MS.gene80219:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.4:+92868663 | None:intergenic |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.4:-92868428 | MS.gene80219:CDS |
| TTGTTTGCGAGCATAAAATG+TGG | 0.626952 | 3.4:+92867035 | None:intergenic |
| AATGGTGGTGATAATAATGG+GGG | 0.628201 | 3.4:-92866790 | MS.gene80219:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 3.4:+92868810 | None:intergenic |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.4:-92868352 | MS.gene80219:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.4:+92868746 | None:intergenic |
| GCTTGAGGCTGCTAAAGCCG+TGG | 0.632981 | 3.4:-92868125 | MS.gene80219:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.4:-92868290 | MS.gene80219:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 3.4:+92868451 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.4:-92868407 | MS.gene80219:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92866851 | MS.gene80219:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.4:-92868095 | MS.gene80219:CDS |
| AACCAATATCAACATGTACC+GGG | 0.649459 | 3.4:-92868929 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.4:-92868308 | MS.gene80219:CDS |
| TTCCGGCGCCAGTTATCACA+AGG | 0.656470 | 3.4:+92868887 | None:intergenic |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 3.4:+92866712 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.4:-92866886 | MS.gene80219:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 3.4:+92866709 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.4:-92866848 | MS.gene80219:CDS |
| AGACGGTGCAGGATTGACCC+GGG | 0.662490 | 3.4:+92868827 | None:intergenic |
| GTACACTTCTCAATGCACTT+GGG | 0.664100 | 3.4:-92866930 | MS.gene80219:CDS |
| GAAAGCTGCTTGGACAATGG+CGG | 0.679670 | 3.4:-92868161 | MS.gene80219:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.680440 | 3.4:+92868661 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.4:-92866841 | MS.gene80219:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.4:-92868398 | MS.gene80219:CDS |
| GCTGGAGAAGGTGAGAAACA+GGG | 0.684270 | 3.4:-92868268 | MS.gene80219:CDS |
| AAAGATCCCATCCAAGCCGG+AGG | 0.687910 | 3.4:+92866670 | None:intergenic |
| AGAAACAGGGAATTAAAGTG+AGG | 0.688934 | 3.4:-92868255 | MS.gene80219:CDS |
| CTTTCGTAATCGTCAACACG+AGG | 0.692794 | 3.4:+92868712 | None:intergenic |
| CCATTGTCATTGAAGCAACG+AGG | 0.710320 | 3.4:+92868593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATAAAATTAAATCATT+CGG | - | chr3.4:92868073-92868092 | MS.gene80219:CDS | 10.0% |
| !!! | ATTAAAAATCTTCTTTTTTT+TGG | + | chr3.4:92868368-92868387 | None:intergenic | 10.0% |
| !!! | TATGTTTTACTTTTAATCAA+CGG | + | chr3.4:92868300-92868319 | None:intergenic | 15.0% |
| !! | AAAAGTAAAACATAACAAGT+AGG | - | chr3.4:92868306-92868325 | MS.gene80219:CDS | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | - | chr3.4:92868449-92868468 | MS.gene80219:CDS | 20.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | chr3.4:92867122-92867141 | MS.gene80219:CDS | 20.0% |
| !! | CCACAATATAGTTTAATAAA+AGG | + | chr3.4:92867892-92867911 | None:intergenic | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | chr3.4:92867121-92867140 | MS.gene80219:CDS | 20.0% |
| !! | TTAAATTCATACATATACCT+AGG | + | chr3.4:92867753-92867772 | None:intergenic | 20.0% |
| !!! | AAAAATCTTCTTTTTTTTGG+TGG | + | chr3.4:92868365-92868384 | None:intergenic | 20.0% |
| !!! | CCTTTTATTAAACTATATTG+TGG | - | chr3.4:92867889-92867908 | MS.gene80219:intron | 20.0% |
| ! | AAGAAAAAGATTGAAGAATG+TGG | - | chr3.4:92868233-92868252 | MS.gene80219:CDS | 25.0% |
| ! | AAGAAGAAGTTAAATTTGCA+AGG | + | chr3.4:92867587-92867606 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.4:92868759-92868778 | MS.gene80219:CDS | 25.0% |
| ! | ACACAAATAATAGCAAGAAA+AGG | + | chr3.4:92868163-92868182 | None:intergenic | 25.0% |
| ! | ATATTGAAACCAATCACAAA+GGG | + | chr3.4:92867788-92867807 | None:intergenic | 25.0% |
| ! | ATGATATATGTTCATTTGCA+AGG | + | chr3.4:92868036-92868055 | None:intergenic | 25.0% |
| ! | GTATATTAACTATGGATTTG+CGG | + | chr3.4:92868014-92868033 | None:intergenic | 25.0% |
| ! | TATATTGAAACCAATCACAA+AGG | + | chr3.4:92867789-92867808 | None:intergenic | 25.0% |
| ! | TTAACAAAAATTGACAAGGT+TGG | + | chr3.4:92868270-92868289 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.4:92868759-92868778 | None:intergenic | 25.0% |
| ! | TTTGCAAGGTATATTAACTA+TGG | + | chr3.4:92868022-92868041 | None:intergenic | 25.0% |
| !! | AAATTAGTTTGGCATATTTG+AGG | + | chr3.4:92866884-92866903 | None:intergenic | 25.0% |
| !! | TAATGTTTAATCTGTCGATT+GGG | + | chr3.4:92867959-92867978 | None:intergenic | 25.0% |
| !!! | AATGTTTACTTTTTAAGTGC+TGG | - | chr3.4:92868385-92868404 | MS.gene80219:CDS | 25.0% |
| !!! | TCACTGTAATTACAGTTTTT+TGG | - | chr3.4:92867667-92867686 | MS.gene80219:intron | 25.0% |
| AAAGGATCATGATTTAGACT+TGG | + | chr3.4:92868145-92868164 | None:intergenic | 30.0% | |
| AAGTAGCAAAATGCTAATTG+AGG | - | chr3.4:92867988-92868007 | MS.gene80219:intron | 30.0% | |
| AATTGAACCAATTCGGATTA+TGG | - | chr3.4:92867057-92867076 | MS.gene80219:CDS | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.4:92868762-92868781 | MS.gene80219:CDS | 30.0% | |
| CAACTTGAATTGAACCAATT+CGG | - | chr3.4:92867050-92867069 | MS.gene80219:CDS | 30.0% | |
| CCTGTTAACAAAAATTGACA+AGG | + | chr3.4:92868274-92868293 | None:intergenic | 30.0% | |
| GTAATGTTTAATCTGTCGAT+TGG | + | chr3.4:92867960-92867979 | None:intergenic | 30.0% | |
| GTTATACGCAAAGAAAAAAG+AGG | - | chr3.4:92868569-92868588 | MS.gene80219:CDS | 30.0% | |
| TAAAGCTTGAAAAGAAAGCA+TGG | - | chr3.4:92866712-92866731 | MS.gene80219:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr3.4:92867119-92867138 | None:intergenic | 30.0% | |
| TATTGAAACCAATCACAAAG+GGG | + | chr3.4:92867787-92867806 | None:intergenic | 30.0% | |
| TATTTACGAAGATCATAGGA+CGG | - | chr3.4:92867835-92867854 | MS.gene80219:intron | 30.0% | |
| TGCATATTTACGAAGATCAT+AGG | - | chr3.4:92867831-92867850 | MS.gene80219:intron | 30.0% | |
| TGTAAATCCATAATCCGAAT+TGG | + | chr3.4:92867067-92867086 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.4:92868751-92868770 | MS.gene80219:CDS | 30.0% | |
| ! | AACTTTAAGTTTAAGCTCCT+AGG | - | chr3.4:92867733-92867752 | MS.gene80219:intron | 30.0% |
| ! | AATGTTTAATCTGTCGATTG+GGG | + | chr3.4:92867958-92867977 | None:intergenic | 30.0% |
| ! | ACTAATGGTGGTGATAATAA+TGG | - | chr3.4:92868774-92868793 | MS.gene80219:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.4:92868678-92868697 | MS.gene80219:CDS | 30.0% |
| ! | CCTTGTCAATTTTTGTTAAC+AGG | - | chr3.4:92868271-92868290 | MS.gene80219:CDS | 30.0% |
| ! | CTAATGGTGGTGATAATAAT+GGG | - | chr3.4:92868775-92868794 | MS.gene80219:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.4:92868681-92868700 | MS.gene80219:CDS | 30.0% |
| ! | TAATGGTGGTGATAATAATG+GGG | - | chr3.4:92868776-92868795 | MS.gene80219:CDS | 30.0% |
| ! | TAGTGTTGAATATGACACTA+AGG | - | chr3.4:92867556-92867575 | MS.gene80219:intron | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr3.4:92867346-92867365 | MS.gene80219:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | - | chr3.4:92867211-92867230 | MS.gene80219:intron | 30.0% |
| !!! | AATCTTCTTTTTTTTGGTGG+TGG | + | chr3.4:92868362-92868381 | None:intergenic | 30.0% |
| AACGAGTTCATTAACGTGAT+TGG | + | chr3.4:92866925-92866944 | None:intergenic | 35.0% | |
| AAGCTTTACATCGTCAATTC+CGG | + | chr3.4:92866700-92866719 | None:intergenic | 35.0% | |
| ACTATATTGTGGTTGCAGAT+AGG | - | chr3.4:92867900-92867919 | MS.gene80219:intron | 35.0% | |
| AGAAACAGGGAATTAAAGTG+AGG | - | chr3.4:92867312-92867331 | MS.gene80219:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.4:92868476-92868495 | MS.gene80219:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | chr3.4:92866895-92866914 | None:intergenic | 35.0% | |
| ATCCACCAATTGCTTAACAT+TGG | + | chr3.4:92867093-92867112 | None:intergenic | 35.0% | |
| ATTGAAACCAATCACAAAGG+GGG | + | chr3.4:92867786-92867805 | None:intergenic | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | chr3.4:92866907-92866926 | None:intergenic | 35.0% | |
| ATTTACGAAGATCATAGGAC+GGG | - | chr3.4:92867836-92867855 | MS.gene80219:intron | 35.0% | |
| CAATGCCAATGTTAAGCAAT+TGG | - | chr3.4:92867085-92867104 | MS.gene80219:CDS | 35.0% | |
| GACGGGAGTTAAAAATTCAA+TGG | - | chr3.4:92867853-92867872 | MS.gene80219:intron | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | chr3.4:92866908-92866927 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.4:92867197-92867216 | MS.gene80219:intron | 35.0% | |
| TCAGAATACCTTGTGATAAC+TGG | - | chr3.4:92866672-92866691 | MS.gene80219:CDS | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | chr3.4:92866909-92866928 | None:intergenic | 35.0% | |
| TTGTTTGCGAGCATAAAATG+TGG | + | chr3.4:92868535-92868554 | None:intergenic | 35.0% | |
| ! | AATAATGGGGGAATAACTGA+AGG | - | chr3.4:92868789-92868808 | MS.gene80219:CDS | 35.0% |
| ! | AATGGTGGTGATAATAATGG+GGG | - | chr3.4:92868777-92868796 | MS.gene80219:CDS | 35.0% |
| ! | ATGTTTAATCTGTCGATTGG+GGG | + | chr3.4:92867957-92867976 | None:intergenic | 35.0% |
| ! | TATTTTACCCCCTTTGTGAT+TGG | - | chr3.4:92867776-92867795 | MS.gene80219:intron | 35.0% |
| ! | TTAGTTTGGCATATTTGAGG+AGG | + | chr3.4:92866881-92866900 | None:intergenic | 35.0% |
| !! | AAAGAAAGCATGGATTTTCC+CGG | - | chr3.4:92866722-92866741 | MS.gene80219:CDS | 35.0% |
| !! | ATTCAACACTAGCTTTGCTA+AGG | + | chr3.4:92867547-92867566 | None:intergenic | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.4:92867210-92867229 | MS.gene80219:intron | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | - | chr3.4:92868397-92868416 | MS.gene80219:CDS | 35.0% |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92868817-92868836 | None:intergenic | 40.0% | |
| AGCTTTCTTCTTAGCCAACT+CGG | + | chr3.4:92867393-92867412 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.4:92868636-92868655 | MS.gene80219:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92868816-92868835 | MS.gene80219:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.4:92868577-92868596 | MS.gene80219:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr3.4:92866927-92866946 | MS.gene80219:CDS | 40.0% | |
| CTTCGTAAATATGCAGTGCA+CGG | + | chr3.4:92867826-92867845 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.4:92867259-92867278 | MS.gene80219:intron | 40.0% | |
| GAACAACTACACAGCTGTAA+GGG | - | chr3.4:92868659-92868678 | MS.gene80219:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92868716-92868735 | MS.gene80219:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.4:92868576-92868595 | MS.gene80219:CDS | 40.0% | |
| GTACACTTCTCAATGCACTT+GGG | - | chr3.4:92868637-92868656 | MS.gene80219:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTCT+AGG | - | chr3.4:92868407-92868426 | MS.gene80219:CDS | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | + | chr3.4:92868861-92868880 | None:intergenic | 40.0% | |
| TGCCAATGTTAAGCAATTGG+TGG | - | chr3.4:92867088-92867107 | MS.gene80219:CDS | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | chr3.4:92866980-92866999 | MS.gene80219:CDS | 40.0% | |
| TGTTGAGTTAGCAAGTGCTA+TGG | - | chr3.4:92868198-92868217 | MS.gene80219:CDS | 40.0% | |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | chr3.4:92866990-92867009 | MS.gene80219:CDS | 40.0% |
| ! | ACTTCGAAGGTGTAATTCAC+CGG | + | chr3.4:92866777-92866796 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | + | chr3.4:92866659-92866678 | None:intergenic | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+GGG | - | chr3.4:92866723-92866742 | MS.gene80219:CDS | 40.0% |
| !! | AGCTTTAAGCTTCTCAGTAG+TGG | + | chr3.4:92867519-92867538 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | - | chr3.4:92867215-92867234 | MS.gene80219:intron | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr3.4:92868867-92868886 | MS.gene80219:CDS | 45.0% | |
| ACGAGGACCTATTGTGAAGA+CGG | + | chr3.4:92866841-92866860 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr3.4:92866790-92866809 | None:intergenic | 45.0% | |
| CCATTGTCATTGAAGCAACG+AGG | + | chr3.4:92866977-92866996 | None:intergenic | 45.0% | |
| CCTCGTTGCTTCAATGACAA+TGG | - | chr3.4:92866974-92866993 | MS.gene80219:CDS | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.4:92868575-92868594 | MS.gene80219:CDS | 45.0% | |
| CTAGGTACAAGAGGCTAACT+GGG | - | chr3.4:92868425-92868444 | MS.gene80219:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr3.4:92866939-92866958 | MS.gene80219:CDS | 45.0% | |
| CTTTCGTAATCGTCAACACG+AGG | + | chr3.4:92866858-92866877 | None:intergenic | 45.0% | |
| GAAGAAAGCTGCTTGGACAA+TGG | - | chr3.4:92867403-92867422 | MS.gene80219:intron | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr3.4:92867277-92867296 | MS.gene80219:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr3.4:92867355-92867374 | MS.gene80219:intron | 45.0% | |
| GGAACAACTACACAGCTGTA+AGG | - | chr3.4:92868658-92868677 | MS.gene80219:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3.4:92867188-92867207 | MS.gene80219:intron | 45.0% | |
| TCTAGGTACAAGAGGCTAAC+TGG | - | chr3.4:92868424-92868443 | MS.gene80219:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92868482-92868501 | MS.gene80219:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.4:92868719-92868738 | MS.gene80219:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | + | chr3.4:92868858-92868877 | None:intergenic | 45.0% | |
| TGGCTAAGAAGAAAGCTGCT+TGG | - | chr3.4:92867396-92867415 | MS.gene80219:intron | 45.0% | |
| ! | AGGGAGTTTTTCTGCACTCA+TGG | + | chr3.4:92866805-92866824 | None:intergenic | 45.0% |
| ! | CATCAATTTTCGCTGCGTTC+TGG | + | chr3.4:92867250-92867269 | None:intergenic | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3.4:92867139-92867158 | MS.gene80219:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.4:92868798-92868817 | MS.gene80219:CDS | 45.0% |
| AATATGCAGTGCACGGACGT+AGG | + | chr3.4:92867819-92867838 | None:intergenic | 50.0% | |
| AGGTGTAATTCACCGGTGAG+AGG | + | chr3.4:92866770-92866789 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr3.4:92867480-92867499 | MS.gene80219:intron | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.4:92868592-92868611 | MS.gene80219:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr3.4:92867276-92867295 | MS.gene80219:intron | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.4:92867467-92867486 | MS.gene80219:intron | 50.0% | |
| GAAAGCTGCTTGGACAATGG+CGG | - | chr3.4:92867406-92867425 | MS.gene80219:intron | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3.4:92867169-92867188 | MS.gene80219:intron | 50.0% | |
| GACCTATTGTGAAGACGGCA+GGG | + | chr3.4:92866836-92866855 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr3.4:92868878-92868897 | None:intergenic | 50.0% | |
| GCTGGAGAAGGTGAGAAACA+GGG | - | chr3.4:92867299-92867318 | MS.gene80219:intron | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3.4:92867160-92867179 | MS.gene80219:intron | 50.0% | |
| GGTAAAGATCCCATCCAAGC+CGG | + | chr3.4:92868903-92868922 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.4:92868603-92868622 | MS.gene80219:CDS | 50.0% | |
| TACCTTGTGATAACTGGCGC+CGG | - | chr3.4:92866678-92866697 | MS.gene80219:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3.4:92867159-92867178 | MS.gene80219:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr3.4:92867098-92867117 | MS.gene80219:CDS | 50.0% |
| ! | CTGGATGCTCTAGGTACAAG+AGG | - | chr3.4:92868416-92868435 | MS.gene80219:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCTT+TGG | - | chr3.4:92868503-92868522 | MS.gene80219:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.4:92868797-92868816 | MS.gene80219:CDS | 50.0% |
| !! | TGCTAAAGCCGTGGCTCTAA+GGG | - | chr3.4:92867451-92867470 | MS.gene80219:intron | 50.0% |
| AAAGATCCCATCCAAGCCGG+AGG | + | chr3.4:92868900-92868919 | None:intergenic | 55.0% | |
| AAGACGGCAGGGAGAACGAA+AGG | + | chr3.4:92866825-92866844 | None:intergenic | 55.0% | |
| AAGACGGTGCAGGATTGACC+CGG | + | chr3.4:92866744-92866763 | None:intergenic | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr3.4:92867361-92867380 | MS.gene80219:intron | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | + | chr3.4:92866824-92866843 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.4:92868726-92868745 | MS.gene80219:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.4:92867462-92867481 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+AGG | - | chr3.4:92866831-92866850 | MS.gene80219:CDS | 55.0% | |
| GCAAACAGGCATGTTGCCTC+CGG | - | chr3.4:92868881-92868900 | MS.gene80219:CDS | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.4:92868591-92868610 | MS.gene80219:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr3.4:92867472-92867491 | MS.gene80219:intron | 55.0% | |
| GGACCTATTGTGAAGACGGC+AGG | + | chr3.4:92866837-92866856 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATTCCGAGT+TGG | - | chr3.4:92867376-92867395 | MS.gene80219:intron | 55.0% | |
| GGCTGGAGAAGGTGAGAAAC+AGG | - | chr3.4:92867298-92867317 | MS.gene80219:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.4:92867281-92867300 | MS.gene80219:intron | 55.0% | |
| TTCCGGCGCCAGTTATCACA+AGG | + | chr3.4:92866683-92866702 | None:intergenic | 55.0% | |
| TTGGACAATGGCGGCTCAAG+TGG | - | chr3.4:92867415-92867434 | MS.gene80219:intron | 55.0% | |
| ! | CTGCTAAAGCCGTGGCTCTA+AGG | - | chr3.4:92867450-92867469 | MS.gene80219:intron | 55.0% |
| !! | ATGTTGCCTCCGGCTTGGAT+GGG | - | chr3.4:92868891-92868910 | MS.gene80219:CDS | 55.0% |
| AGACGGTGCAGGATTGACCC+GGG | + | chr3.4:92866743-92866762 | None:intergenic | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr3.4:92866760-92866779 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr3.4:92866755-92866774 | MS.gene80219:CDS | 60.0% | |
| GCTTGAGGCTGCTAAAGCCG+TGG | - | chr3.4:92867442-92867461 | MS.gene80219:intron | 60.0% | |
| GGCTCAAGTGGCTGAGCTTG+AGG | - | chr3.4:92867427-92867446 | MS.gene80219:intron | 60.0% | |
| TGAGAGGTCGAAGACGGTGC+AGG | + | chr3.4:92866754-92866773 | None:intergenic | 60.0% | |
| !! | CATGTTGCCTCCGGCTTGGA+TGG | - | chr3.4:92868890-92868909 | MS.gene80219:CDS | 60.0% |
| CAGGCATGTTGCCTCCGGCT+TGG | - | chr3.4:92868886-92868905 | MS.gene80219:CDS | 65.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.4:92868736-92868755 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+AGG | - | chr3.4:92867287-92867306 | MS.gene80219:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92866651 | 92868938 | 92866651 | ID=MS.gene80219 |
| chr3.4 | mRNA | 92866651 | 92868938 | 92866651 | ID=MS.gene80219.t1;Parent=MS.gene80219 |
| chr3.4 | exon | 92868012 | 92868938 | 92868012 | ID=MS.gene80219.t1.exon1;Parent=MS.gene80219.t1 |
| chr3.4 | CDS | 92868012 | 92868938 | 92868012 | ID=cds.MS.gene80219.t1;Parent=MS.gene80219.t1 |
| chr3.4 | exon | 92866651 | 92867160 | 92866651 | ID=MS.gene80219.t1.exon2;Parent=MS.gene80219.t1 |
| chr3.4 | CDS | 92866651 | 92867160 | 92866651 | ID=cds.MS.gene80219.t1;Parent=MS.gene80219.t1 |
| Gene Sequence |
| Protein sequence |
