Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24860.t1 | XP_013468625.1 | 94.3 | 474 | 27 | 0 | 1 | 474 | 1 | 474 | 6.70E-184 | 653.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24860.t1 | D2XNQ8 | 88.3 | 478 | 52 | 1 | 1 | 474 | 1 | 478 | 2.2e-175 | 616.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24860.t1 | A0A072VLE3 | 94.3 | 474 | 27 | 0 | 1 | 474 | 1 | 474 | 4.8e-184 | 653.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051839 | MS.gene24860 | 0.961642 | 6.13E-120 | -1.69E-46 |
| MS.gene051841 | MS.gene24860 | 0.970334 | 1.85E-131 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24860.t1 | MTR_1g073400 | 96.624 | 474 | 16 | 0 | 1 | 474 | 1 | 474 | 0.0 | 892 |
| MS.gene24860.t1 | MTR_3g106480 | 90.586 | 478 | 41 | 1 | 1 | 474 | 1 | 478 | 0.0 | 889 |
| MS.gene24860.t1 | MTR_1g115145 | 93.319 | 479 | 21 | 4 | 1 | 474 | 1 | 473 | 0.0 | 876 |
| MS.gene24860.t1 | MTR_1g071130 | 89.895 | 475 | 21 | 2 | 1 | 474 | 1 | 449 | 0.0 | 865 |
| MS.gene24860.t1 | MTR_3g106485 | 91.139 | 474 | 42 | 0 | 1 | 474 | 1 | 474 | 0.0 | 863 |
| MS.gene24860.t1 | MTR_3g106420 | 90.586 | 478 | 41 | 1 | 1 | 474 | 3 | 480 | 0.0 | 860 |
| MS.gene24860.t1 | MTR_1g083190 | 89.451 | 474 | 46 | 1 | 1 | 474 | 3 | 472 | 0.0 | 836 |
| MS.gene24860.t1 | MTR_3g106430 | 90.909 | 473 | 43 | 0 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene24860.t1 | MTR_3g106470 | 79.874 | 477 | 36 | 3 | 1 | 473 | 32 | 452 | 0.0 | 723 |
| MS.gene24860.t1 | MTR_8g063830 | 79.741 | 464 | 51 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene24860.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.18e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24860.t1 | AT5G25260 | 74.684 | 474 | 104 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene24860.t1 | AT5G25250 | 75.532 | 470 | 103 | 2 | 1 | 469 | 1 | 459 | 0.0 | 728 |
| MS.gene24860.t1 | AT5G64870 | 71.822 | 472 | 118 | 3 | 2 | 469 | 3 | 463 | 0.0 | 656 |
Find 113 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.2:-6713637 | MS.gene24860:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.2:-6712628 | MS.gene24860:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.2:-6713309 | MS.gene24860:CDS |
| TGGAATAACCGAAGGTTCTA+TGG | 0.272931 | 8.2:-6712594 | MS.gene24860:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.2:-6712701 | MS.gene24860:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.2:-6713636 | MS.gene24860:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.2:-6713549 | MS.gene24860:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.2:+6712623 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.2:-6713928 | MS.gene24860:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.2:-6712721 | MS.gene24860:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.2:-6712955 | MS.gene24860:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.2:-6712501 | MS.gene24860:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.2:-6713447 | MS.gene24860:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.2:-6713709 | MS.gene24860:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.2:-6712620 | MS.gene24860:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.2:+6714062 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.2:+6714068 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.2:-6714087 | MS.gene24860:CDS |
| CAACGCGAATGTTAAGCAAT+TGG | 0.420451 | 8.2:-6713674 | MS.gene24860:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.2:+6713890 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.2:-6713708 | MS.gene24860:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.2:+6712586 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.2:-6714047 | MS.gene24860:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.2:-6714122 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.2:-6712788 | MS.gene24860:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.474006 | 8.2:-6712524 | MS.gene24860:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.2:-6712903 | MS.gene24860:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.2:+6713878 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.2:-6713356 | MS.gene24860:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.2:+6713768 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.2:-6713483 | MS.gene24860:CDS |
| CGCGAATGTTAAGCAATTGG+TGG | 0.500388 | 8.2:-6713671 | MS.gene24860:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.2:-6713308 | MS.gene24860:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.2:-6712505 | MS.gene24860:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.2:-6713600 | MS.gene24860:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.2:-6713779 | MS.gene24860:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.2:-6713562 | MS.gene24860:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.2:-6713478 | MS.gene24860:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.2:-6713434 | MS.gene24860:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.2:-6713548 | MS.gene24860:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 8.2:+6712516 | None:intergenic |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.2:-6713832 | MS.gene24860:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.2:-6712500 | MS.gene24860:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.2:-6712575 | MS.gene24860:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.2:-6713661 | MS.gene24860:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.2:-6713332 | MS.gene24860:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.2:-6712617 | MS.gene24860:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.2:-6712681 | MS.gene24860:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.2:-6713460 | MS.gene24860:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.2:-6713344 | MS.gene24860:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.2:-6713383 | MS.gene24860:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.2:-6714081 | MS.gene24860:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.2:-6714004 | MS.gene24860:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.2:+6712491 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.2:+6714086 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.2:-6713398 | MS.gene24860:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.2:-6712954 | MS.gene24860:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.2:+6713925 | None:intergenic |
| AGTATTTGGACTAATGGAGG+TGG | 0.568629 | 8.2:-6712614 | MS.gene24860:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.2:-6712743 | MS.gene24860:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.2:-6713785 | MS.gene24860:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.570732 | 8.2:-6712593 | MS.gene24860:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.2:-6712963 | MS.gene24860:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.2:+6713985 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.2:+6714018 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.2:+6713992 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.2:-6712582 | MS.gene24860:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.2:-6712876 | MS.gene24860:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.2:-6712776 | MS.gene24860:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.2:+6713881 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.2:-6712720 | MS.gene24860:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.2:+6713854 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.2:-6713461 | MS.gene24860:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.2:-6713404 | MS.gene24860:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.2:-6713620 | MS.gene24860:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.2:+6713921 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.2:+6713855 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.2:-6712897 | MS.gene24860:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.2:+6713972 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.2:-6713820 | MS.gene24860:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.2:+6714079 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.2:-6713279 | MS.gene24860:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.2:-6713544 | MS.gene24860:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.2:-6713292 | MS.gene24860:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.2:-6713571 | MS.gene24860:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.2:-6713459 | MS.gene24860:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.2:+6714002 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.2:-6713482 | MS.gene24860:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.2:-6714121 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.2:+6713643 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.2:-6713599 | MS.gene24860:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.2:+6713937 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.2:-6712663 | MS.gene24860:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.2:-6713464 | MS.gene24860:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.2:-6713287 | MS.gene24860:CDS |
| TGGACAGTCTTAAAGAGAGG+TGG | 0.649808 | 8.2:+6712536 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.2:-6713203 | MS.gene24860:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.2:-6713845 | MS.gene24860:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.2:-6712698 | MS.gene24860:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.2:-6713363 | MS.gene24860:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.2:+6713904 | None:intergenic |
| AATGGAGGTGGAATAACCGA+AGG | 0.661598 | 8.2:-6712602 | MS.gene24860:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.2:-6713317 | MS.gene24860:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.2:+6712494 | None:intergenic |
| TCATGGACAGTCTTAAAGAG+AGG | 0.674719 | 8.2:+6712533 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.2:-6713590 | MS.gene24860:CDS |
| ATTAATGCTGAGGCAGTACG+CGG | 0.685872 | 8.2:-6712653 | MS.gene24860:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.2:+6713853 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.2:-6713353 | MS.gene24860:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.2:-6713368 | MS.gene24860:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.2:+6714019 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.2:+6712709 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.2:+6713785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.2:6713589-6713608 | MS.gene24860:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.2:6712947-6712966 | MS.gene24860:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr8.2:6713476-6713495 | MS.gene24860:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.2:6712946-6712965 | MS.gene24860:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.2:6713545-6713564 | MS.gene24860:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.2:6713963-6713982 | MS.gene24860:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.2:6713963-6713982 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.2:6712708-6712727 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.2:6713955-6713974 | MS.gene24860:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.2:6713601-6713620 | MS.gene24860:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.2:6713966-6713985 | MS.gene24860:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.2:6713564-6713583 | MS.gene24860:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.2:6713380-6713399 | MS.gene24860:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.2:6712943-6712962 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.2:6712536-6712555 | MS.gene24860:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.2:6713411-6713430 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.2:6713882-6713901 | MS.gene24860:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.2:6713885-6713904 | MS.gene24860:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.2:6713035-6713054 | MS.gene24860:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.2:6712524-6712543 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.2:6712731-6712750 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.2:6713781-6713800 | MS.gene24860:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.2:6712732-6712751 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.2:6713773-6713792 | MS.gene24860:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.2:6712738-6712757 | MS.gene24860:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.2:6712705-6712724 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.2:6712733-6712752 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.2:6714000-6714019 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.2:6712547-6712566 | MS.gene24860:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.2:6712638-6712657 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.2:6713400-6713419 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.2:6713034-6713053 | MS.gene24860:intron | 35.0% |
| ! | TTAAGCACTTTTGTCGGATA+AGG | + | chr8.2:6714111-6714130 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.2:6712875-6712894 | MS.gene24860:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.2:6712874-6712893 | MS.gene24860:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.2:6713170-6713189 | MS.gene24860:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.2:6713605-6713624 | MS.gene24860:CDS | 35.0% |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.2:6713680-6713699 | MS.gene24860:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.2:6714001-6714020 | MS.gene24860:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.2:6713840-6713859 | MS.gene24860:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+TGG | - | chr8.2:6713969-6713988 | MS.gene24860:CDS | 40.0% | |
| CAACGCGAATGTTAAGCAAT+TGG | - | chr8.2:6712909-6712928 | MS.gene24860:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.2:6713877-6713896 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.2:6713101-6713120 | MS.gene24860:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.2:6713920-6713939 | MS.gene24860:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.2:6713780-6713799 | MS.gene24860:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.2:6713021-6713040 | MS.gene24860:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.2:6713990-6714009 | MS.gene24860:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.2:6713611-6713630 | MS.gene24860:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.2:6713149-6713168 | MS.gene24860:intron | 40.0% | |
| TCATGGACAGTCTTAAAGAG+AGG | + | chr8.2:6714053-6714072 | None:intergenic | 40.0% | |
| TGGAATAACCGAAGGTTCTA+TGG | - | chr8.2:6713989-6714008 | MS.gene24860:CDS | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.2:6712814-6712833 | MS.gene24860:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.2:6712601-6712620 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.2:6713039-6713058 | MS.gene24860:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.2:6712818-6712837 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.2:6713863-6713882 | MS.gene24860:CDS | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr8.2:6714059-6714078 | MS.gene24860:CDS | 45.0% | |
| AATGGAGGTGGAATAACCGA+AGG | - | chr8.2:6713981-6714000 | MS.gene24860:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.2:6712665-6712684 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.2:6712614-6712633 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.2:6714008-6714027 | MS.gene24860:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+CGG | - | chr8.2:6713930-6713949 | MS.gene24860:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.2:6712751-6712770 | MS.gene24860:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.2:6713100-6713119 | MS.gene24860:intron | 45.0% | |
| CGCGAATGTTAAGCAATTGG+TGG | - | chr8.2:6712912-6712931 | MS.gene24860:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.2:6712763-6712782 | MS.gene24860:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.2:6713179-6713198 | MS.gene24860:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.2:6713795-6713814 | MS.gene24860:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.2:6713629-6713648 | MS.gene24860:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.2:6713807-6713826 | MS.gene24860:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.2:6713012-6713031 | MS.gene24860:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.2:6712496-6712515 | MS.gene24860:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.2:6713686-6713705 | MS.gene24860:CDS | 45.0% | |
| TGGACAGTCTTAAAGAGAGG+TGG | + | chr8.2:6714050-6714069 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.2:6713902-6713921 | MS.gene24860:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.2:6713628-6713647 | MS.gene24860:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.2:6713136-6713155 | MS.gene24860:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.2:6712500-6712519 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.2:6713215-6713234 | MS.gene24860:CDS | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.2:6712963-6712982 | MS.gene24860:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.2:6713275-6713294 | MS.gene24860:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.2:6713427-6713446 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.2:6712649-6712668 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.2:6712568-6712587 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.2:6712567-6712586 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.2:6712594-6712613 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.2:6713304-6713323 | MS.gene24860:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.2:6714083-6714102 | MS.gene24860:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.2:6712696-6712715 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.2:6713291-6713310 | MS.gene24860:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.2:6713620-6713639 | MS.gene24860:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.2:6712655-6712674 | MS.gene24860:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.2:6713862-6713881 | MS.gene24860:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.2:6712993-6713012 | MS.gene24860:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.2:6714095-6714114 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr8.2:6714070-6714089 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.2:6712984-6713003 | MS.gene24860:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.2:6712502-6712521 | MS.gene24860:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.2:6712804-6712823 | MS.gene24860:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.2:6712983-6713002 | MS.gene24860:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.2:6712922-6712941 | MS.gene24860:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.2:6713274-6713293 | MS.gene24860:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.2:6713227-6713246 | MS.gene24860:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.2:6713707-6713726 | MS.gene24860:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.2:6712629-6712648 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.2:6713185-6713204 | MS.gene24860:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.2:6714092-6714111 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.2:6713266-6713285 | MS.gene24860:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.2:6714082-6714101 | MS.gene24860:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.2:6713124-6713143 | MS.gene24860:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.2:6712682-6712701 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.2:6712518-6712537 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.2:6713123-6713142 | MS.gene24860:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.2:6713296-6713315 | MS.gene24860:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.2:6712661-6712680 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.2:6713200-6713219 | MS.gene24860:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.2:6713105-6713124 | MS.gene24860:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.2:6713220-6713239 | MS.gene24860:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.2:6712507-6712526 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.2:6713239-6713258 | MS.gene24860:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.2:6713230-6713249 | MS.gene24860:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.2:6712584-6712603 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.2:6712579-6712598 | MS.gene24860:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.2:6714078-6714097 | MS.gene24860:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.2:6712801-6712820 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.2:6712798-6712817 | MS.gene24860:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.2:6713119-6713138 | MS.gene24860:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.2:6713251-6713270 | MS.gene24860:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.2:6713122-6713141 | MS.gene24860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6712475 | 6714130 | 6712475 | ID=MS.gene24860 |
| chr8.2 | mRNA | 6712475 | 6714130 | 6712475 | ID=MS.gene24860.t1;Parent=MS.gene24860 |
| chr8.2 | exon | 6713204 | 6714130 | 6713204 | ID=MS.gene24860.t1.exon1;Parent=MS.gene24860.t1 |
| chr8.2 | CDS | 6713204 | 6714130 | 6713204 | ID=cds.MS.gene24860.t1;Parent=MS.gene24860.t1 |
| chr8.2 | exon | 6712475 | 6712972 | 6712475 | ID=MS.gene24860.t1.exon2;Parent=MS.gene24860.t1 |
| chr8.2 | CDS | 6712475 | 6712972 | 6712475 | ID=cds.MS.gene24860.t1;Parent=MS.gene24860.t1 |
| Gene Sequence |
| Protein sequence |
