Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32672.t1 | PNY01485.1 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 7.20E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32672.t1 | D2XNQ9 | 90.8 | 479 | 44 | 0 | 1 | 479 | 1 | 479 | 3.0e-180 | 632.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32672.t1 | A0A2K3NEM2 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 5.2e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055367 | MS.gene32672 | 0.812685 | 3.74E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene32672 | -0.800669 | 1.29E-48 | -1.69E-46 |
| MS.gene058142 | MS.gene32672 | 0.848439 | 6.12E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene32672 | -0.810568 | 1.08E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32672.t1 | MTR_3g106420 | 93.737 | 479 | 30 | 0 | 1 | 479 | 1 | 479 | 0.0 | 892 |
| MS.gene32672.t1 | MTR_3g106480 | 91.195 | 477 | 42 | 0 | 3 | 479 | 1 | 477 | 0.0 | 889 |
| MS.gene32672.t1 | MTR_3g106485 | 92.872 | 477 | 30 | 2 | 3 | 479 | 1 | 473 | 0.0 | 870 |
| MS.gene32672.t1 | MTR_1g083190 | 92.067 | 479 | 30 | 1 | 1 | 479 | 1 | 471 | 0.0 | 868 |
| MS.gene32672.t1 | MTR_3g106430 | 92.243 | 477 | 33 | 2 | 3 | 479 | 1 | 473 | 0.0 | 838 |
| MS.gene32672.t1 | MTR_1g073400 | 89.937 | 477 | 44 | 1 | 3 | 479 | 1 | 473 | 0.0 | 832 |
| MS.gene32672.t1 | MTR_1g115145 | 87.657 | 478 | 52 | 3 | 3 | 479 | 1 | 472 | 0.0 | 828 |
| MS.gene32672.t1 | MTR_1g071130 | 85.115 | 477 | 42 | 2 | 3 | 479 | 1 | 448 | 0.0 | 827 |
| MS.gene32672.t1 | MTR_3g106470 | 86.875 | 480 | 7 | 2 | 1 | 480 | 30 | 453 | 0.0 | 792 |
| MS.gene32672.t1 | MTR_8g063830 | 81.290 | 465 | 46 | 5 | 3 | 466 | 1 | 425 | 0.0 | 683 |
| MS.gene32672.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 3.91e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32672.t1 | AT5G25260 | 73.840 | 474 | 112 | 2 | 3 | 476 | 1 | 462 | 0.0 | 724 |
| MS.gene32672.t1 | AT5G25250 | 73.013 | 478 | 115 | 2 | 3 | 480 | 1 | 464 | 0.0 | 716 |
| MS.gene32672.t1 | AT5G64870 | 70.440 | 477 | 130 | 1 | 4 | 480 | 3 | 468 | 0.0 | 659 |
Find 112 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.044243 | 3.1:-84461877 | MS.gene32672:CDS |
| CAACTTGAGTTGAATCAATT+TGG | 0.187809 | 3.1:-84461948 | MS.gene32672:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.1:-84460436 | MS.gene32672:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.283314 | 3.1:-84461876 | MS.gene32672:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.1:-84461548 | MS.gene32672:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.1:+84462076 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.312153 | 3.1:-84460297 | MS.gene32672:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.1:-84461801 | MS.gene32672:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.1:-84460509 | MS.gene32672:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.1:-84462167 | MS.gene32672:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3.1:+84462224 | None:intergenic |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.1:+84460431 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.1:-84460428 | MS.gene32672:CDS |
| GTTATTTCGCTGCAGAGAAC+TGG | 0.390936 | 3.1:-84461717 | MS.gene32672:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.404543 | 3.1:-84461788 | MS.gene32672:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.1:-84462326 | MS.gene32672:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.1:-84460763 | MS.gene32672:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.1:-84462147 | MS.gene32672:CDS |
| AGCTTGGACTAAGGCGGCTC+AGG | 0.418423 | 3.1:-84461586 | MS.gene32672:CDS |
| GAAGAAGGCAGCTTGGACTA+AGG | 0.419386 | 3.1:-84461595 | MS.gene32672:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.1:-84462071 | MS.gene32672:CDS |
| CGGTCAATCCTGCTCCGTCT+TGG | 0.421815 | 3.1:-84462255 | MS.gene32672:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.453058 | 3.1:+84462106 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.466301 | 3.1:-84460296 | MS.gene32672:CDS |
| CAAGACGGAGCAGGATTGAC+CGG | 0.473034 | 3.1:+84462256 | None:intergenic |
| TGGACTAATGGTGGTGATAG+TGG | 0.473313 | 3.1:-84460416 | MS.gene32672:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 3.1:-84462275 | MS.gene32672:CDS |
| CGGGCATGTTGCCTCCTGCT+TGG | 0.479649 | 3.1:-84460301 | MS.gene32672:CDS |
| GGCTGAAGTAGAGGCGAAGA+AGG | 0.482630 | 3.1:-84461562 | MS.gene32672:CDS |
| GAAACAACTACACTGCTGTA+AGG | 0.484359 | 3.1:-84460529 | MS.gene32672:CDS |
| TAAGACTGTCCATGAGCAAA+CGG | 0.494142 | 3.1:-84460321 | MS.gene32672:CDS |
| CTCAAGTCCGCGTACTGCCT+CGG | 0.500340 | 3.1:+84460454 | None:intergenic |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.1:+84462164 | None:intergenic |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.505461 | 3.1:-84461583 | MS.gene32672:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.1:-84461839 | MS.gene32672:CDS |
| CAGTGTTCAATATGAAACTA+AGG | 0.509433 | 3.1:-84461442 | MS.gene32672:intron |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.1:-84460711 | MS.gene32672:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 3.1:-84462018 | MS.gene32672:CDS |
| CTCCGTCTTGGACCTCTCAC+CGG | 0.514067 | 3.1:-84462243 | MS.gene32672:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.515574 | 3.1:-84461610 | MS.gene32672:CDS |
| CTAAGGGATGCTGAGTTACA+AGG | 0.517627 | 3.1:-84461531 | MS.gene32672:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.1:+84462176 | None:intergenic |
| GCAACATGCCCGTTTGCTCA+TGG | 0.523503 | 3.1:+84460312 | None:intergenic |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.1:-84461547 | MS.gene32672:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.1:+84462187 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+GGG | 0.532359 | 3.1:-84460320 | MS.gene32672:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.1:-84460425 | MS.gene32672:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.1:+84462120 | None:intergenic |
| TGGCTAAGAAGAAGGCAGCT+TGG | 0.534710 | 3.1:-84461602 | MS.gene32672:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.1:+84460373 | None:intergenic |
| TGAGAGGTCCAAGACGGAGC+AGG | 0.535402 | 3.1:+84462247 | None:intergenic |
| GAGAGAGGCTGAAGTGGCGG+AGG | 0.538584 | 3.1:-84461637 | MS.gene32672:CDS |
| GGCTCAGGTGGCTGAAGTAG+AGG | 0.543694 | 3.1:-84461571 | MS.gene32672:CDS |
| ATTGAACACTGGCTTTGCTA+AGG | 0.543911 | 3.1:+84461454 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.1:-84460596 | MS.gene32672:CDS |
| AAGCAACTTGTGGATGTGCC+TGG | 0.547786 | 3.1:-84461900 | MS.gene32672:CDS |
| GATAAGGCTCCCATCCAAGC+AGG | 0.548081 | 3.1:+84460287 | None:intergenic |
| GAGAACTGGAGAGGGTGACA+AGG | 0.548225 | 3.1:-84461703 | MS.gene32672:CDS |
| GAATCAGAGAGAGGCTGAAG+TGG | 0.550154 | 3.1:-84461643 | MS.gene32672:CDS |
| CTTAGTTTCATATTGAACAC+TGG | 0.552173 | 3.1:+84461443 | None:intergenic |
| GGCGGAGGCTAATTCTGAGT+TGG | 0.552406 | 3.1:-84461622 | MS.gene32672:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.1:-84461673 | MS.gene32672:CDS |
| AAACAACTACACTGCTGTAA+GGG | 0.568312 | 3.1:-84460528 | MS.gene32672:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.1:-84460551 | MS.gene32672:CDS |
| TCAGAGAGAGGCTGAAGTGG+CGG | 0.571247 | 3.1:-84461640 | MS.gene32672:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 3.1:-84462286 | MS.gene32672:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.1:+84462013 | None:intergenic |
| AGTAGAGGCGAAGAAGGCCG+TGG | 0.579775 | 3.1:-84461556 | MS.gene32672:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.1:-84460371 | MS.gene32672:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 3.1:-84460684 | MS.gene32672:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.1:-84460584 | MS.gene32672:CDS |
| AACTGGAGAGGGTGACAAGG+AGG | 0.588193 | 3.1:-84461700 | MS.gene32672:CDS |
| AAGACGGAGCAGGATTGACC+GGG | 0.589066 | 3.1:+84462257 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.1:-84460595 | MS.gene32672:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.1:-84460705 | MS.gene32672:CDS |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3.1:+84462211 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.1:-84462059 | MS.gene32672:CDS |
| ATTGGTTCGAAATTGAGGCA+AGG | 0.608694 | 3.1:-84461783 | MS.gene32672:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.1:-84461518 | MS.gene32672:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.1:-84461810 | MS.gene32672:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.1:-84460762 | MS.gene32672:intron |
| TGCGAATGTTAAGCAACTTG+TGG | 0.616357 | 3.1:-84461910 | MS.gene32672:CDS |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3.1:+84462231 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.1:+84460329 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.620084 | 3.1:-84462021 | MS.gene32672:CDS |
| TTCGCTGCAGAGAACTGGAG+AGG | 0.620124 | 3.1:-84461712 | MS.gene32672:CDS |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.1:-84461859 | MS.gene32672:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.626113 | 3.1:-84462058 | MS.gene32672:CDS |
| ATTAATGCCGAGGCAGTACG+CGG | 0.627180 | 3.1:-84460461 | MS.gene32672:CDS |
| GGGACTTTATCGTGTAGCAA+AGG | 0.633548 | 3.1:-84462351 | MS.gene32672:CDS |
| ACTGGAGAGGGTGACAAGGA+GGG | 0.634623 | 3.1:-84461699 | MS.gene32672:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 3.1:+84461882 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.1:-84461838 | MS.gene32672:CDS |
| CTCAGCATCCCTTAGAGCCA+CGG | 0.641954 | 3.1:+84461539 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:-84460471 | MS.gene32672:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.1:-84460738 | MS.gene32672:CDS |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3.1:-84462024 | MS.gene32672:CDS |
| TCGCTGCAGAGAACTGGAGA+GGG | 0.653793 | 3.1:-84461711 | MS.gene32672:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 3.1:+84460332 | None:intergenic |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.656829 | 3.1:+84462241 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.1:-84460506 | MS.gene32672:CDS |
| AAGGCTCCCATCCAAGCAGG+AGG | 0.676037 | 3.1:+84460290 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.1:-84461829 | MS.gene32672:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.1:+84462143 | None:intergenic |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.1:-84461686 | MS.gene32672:CDS |
| ACTAATGGTGGTGATAGTGG+TGG | 0.697741 | 3.1:-84460413 | MS.gene32672:CDS |
| TTAGAATACCTGTTATCACA+AGG | 0.699616 | 3.1:+84462318 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.712596 | 3.1:-84462057 | MS.gene32672:CDS |
| GAAGGCAGCTTGGACTAAGG+CGG | 0.713400 | 3.1:-84461592 | MS.gene32672:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.1:+84462165 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.1:+84462163 | None:intergenic |
| TGATTGGAGTGTCTATCATG+CGG | 0.778717 | 3.1:+84462092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTATACTTTAATAT+TGG | - | chr3.1:84461754-84461773 | MS.gene32672:CDS | 10.0% |
| !! | CATTTGGTTAAAAATTAAAA+GGG | + | chr3.1:84461403-84461422 | None:intergenic | 15.0% |
| !! | TCATTTGGTTAAAAATTAAA+AGG | + | chr3.1:84461404-84461423 | None:intergenic | 15.0% |
| !!! | AGTTTCATTTTTTAAACAAT+TGG | - | chr3.1:84461594-84461613 | MS.gene32672:CDS | 15.0% |
| !!! | ATATTTTAAAGACCAATTAA+AGG | - | chr3.1:84461480-84461499 | MS.gene32672:CDS | 15.0% |
| !!! | AATTCTCTATAAAGCTTTAA+TGG | + | chr3.1:84461651-84461670 | None:intergenic | 20.0% |
| !!! | ACAATTTGATATGTTTTGAT+AGG | - | chr3.1:84461287-84461306 | MS.gene32672:intron | 20.0% |
| !!! | ATGTTTTCAATATTTAGTGT+TGG | - | chr3.1:84461781-84461800 | MS.gene32672:CDS | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | chr3.1:84461563-84461582 | MS.gene32672:CDS | 20.0% |
| ! | AAAGTTGTGTATCCTTTAAT+TGG | + | chr3.1:84461495-84461514 | None:intergenic | 25.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.1:84460551-84460570 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.1:84462196-84462215 | MS.gene32672:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.1:84460748-84460767 | MS.gene32672:CDS | 25.0% |
| ! | CTTTAATGGTGAAAAAAAAC+AGG | + | chr3.1:84461637-84461656 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.1:84460747-84460766 | MS.gene32672:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.1:84462196-84462215 | None:intergenic | 25.0% |
| ! | TTTATTGATACTTATCACCA+AGG | + | chr3.1:84461690-84461709 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | - | chr3.1:84461670-84461689 | MS.gene32672:CDS | 25.0% |
| !!! | TTTTTTGGTGATTGAAACTT+TGG | - | chr3.1:84461834-84461853 | MS.gene32672:CDS | 25.0% |
| AGGTGTAGAAGATTAATGAT+AGG | - | chr3.1:84461449-84461468 | MS.gene32672:CDS | 30.0% | |
| ATCACTGTGATTAAAGTTGT+TGG | - | chr3.1:84461317-84461336 | MS.gene32672:intron | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.1:84462199-84462218 | MS.gene32672:CDS | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | - | chr3.1:84461182-84461201 | MS.gene32672:intron | 30.0% | |
| CTTAGTTTCATATTGAACAC+TGG | + | chr3.1:84461184-84461203 | None:intergenic | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | - | chr3.1:84462006-84462025 | MS.gene32672:CDS | 30.0% | |
| TTAGAATACCTGTTATCACA+AGG | + | chr3.1:84460309-84460328 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.1:84462188-84462207 | MS.gene32672:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.1:84462115-84462134 | MS.gene32672:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.1:84460553-84460572 | MS.gene32672:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.1:84462118-84462137 | MS.gene32672:CDS | 30.0% |
| ! | GCAATTCTATTTTACTAGCT+AGG | - | chr3.1:84461254-84461273 | MS.gene32672:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | - | chr3.1:84460676-84460695 | MS.gene32672:CDS | 30.0% |
| !!! | GTACTACTGAATCACTTTTT+TGG | - | chr3.1:84461819-84461838 | MS.gene32672:CDS | 30.0% |
| AAACAACTACACTGCTGTAA+GGG | - | chr3.1:84462096-84462115 | MS.gene32672:CDS | 35.0% | |
| ACTCTTGATCAATGGACAAT+AGG | - | chr3.1:84461429-84461448 | MS.gene32672:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.1:84461913-84461932 | MS.gene32672:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.1:84460521-84460540 | None:intergenic | 35.0% | |
| ATTGAAACTTTGGATGGTGT+AGG | - | chr3.1:84461844-84461863 | MS.gene32672:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.1:84460440-84460459 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.1:84460823-84460842 | MS.gene32672:intron | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr3.1:84460338-84460357 | MS.gene32672:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.1:84460507-84460526 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr3.1:84460745-84460764 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.1:84460298-84460317 | MS.gene32672:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.1:84462298-84462317 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.1:84460566-84460585 | MS.gene32672:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr3.1:84460349-84460368 | MS.gene32672:CDS | 35.0% |
| ! | TTAAGGGCTTTTCTCAGATA+AGG | + | chr3.1:84462356-84462375 | None:intergenic | 35.0% |
| ! | TTGGTGATTGAAACTTTGGA+TGG | - | chr3.1:84461838-84461857 | MS.gene32672:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.1:84460836-84460855 | MS.gene32672:intron | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3.1:84460938-84460957 | MS.gene32672:intron | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr3.1:84460416-84460435 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.1:84462254-84462273 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.1:84462073-84462092 | MS.gene32672:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.1:84461106-84461125 | MS.gene32672:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.1:84462253-84462272 | MS.gene32672:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.1:84462014-84462033 | MS.gene32672:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.1:84460565-84460584 | MS.gene32672:CDS | 40.0% | |
| GAAACAACTACACTGCTGTA+AGG | - | chr3.1:84462095-84462114 | MS.gene32672:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.1:84462153-84462172 | MS.gene32672:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.1:84462013-84462032 | MS.gene32672:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.1:84461886-84461905 | MS.gene32672:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.1:84461862-84461881 | MS.gene32672:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.1:84460951-84460970 | MS.gene32672:intron | 40.0% | |
| TAAGACTGTCCATGAGCAAA+CGG | - | chr3.1:84462303-84462322 | MS.gene32672:CDS | 40.0% | |
| TGAGTCACACTCTTGATCAA+TGG | - | chr3.1:84461421-84461440 | MS.gene32672:intron | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.1:84462012-84462031 | MS.gene32672:CDS | 40.0% | |
| TGCGAATGTTAAGCAACTTG+TGG | - | chr3.1:84460714-84460733 | MS.gene32672:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.1:84462295-84462314 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.1:84461861-84461880 | MS.gene32672:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.1:84460567-84460586 | MS.gene32672:CDS | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr3.1:84460403-84460422 | None:intergenic | 40.0% |
| ! | AGTGGTGGTGAAAAAACTGA+AGG | - | chr3.1:84462226-84462245 | MS.gene32672:CDS | 40.0% |
| ! | GATCAAGAGTGTGACTCATT+TGG | + | chr3.1:84461419-84461438 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+CGG | + | chr3.1:84460535-84460554 | None:intergenic | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.1:84461014-84461033 | MS.gene32672:intron | 40.0% |
| !! | ATTGAACACTGGCTTTGCTA+AGG | + | chr3.1:84461173-84461192 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | - | chr3.1:84460841-84460860 | MS.gene32672:intron | 40.0% |
| !! | GAAAAAACTGAAGGTGCCAT+GGG | - | chr3.1:84462235-84462254 | MS.gene32672:CDS | 40.0% |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | - | chr3.1:84460972-84460991 | MS.gene32672:intron | 40.0% |
| !! | TGAAAAAACTGAAGGTGCCA+TGG | - | chr3.1:84462234-84462253 | MS.gene32672:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+GGG | - | chr3.1:84462304-84462323 | MS.gene32672:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.1:84460464-84460483 | None:intergenic | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.1:84461093-84461112 | MS.gene32672:intron | 45.0% | |
| GGGACTTTATCGTGTAGCAA+AGG | - | chr3.1:84460273-84460292 | MS.gene32672:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3.1:84460814-84460833 | MS.gene32672:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.1:84461919-84461938 | MS.gene32672:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | - | chr3.1:84460907-84460926 | MS.gene32672:intron | 45.0% |
| ! | TGGACTAATGGTGGTGATAG+TGG | - | chr3.1:84462208-84462227 | MS.gene32672:CDS | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3.1:84460765-84460784 | MS.gene32672:intron | 45.0% |
| !! | ACTAATGGTGGTGATAGTGG+TGG | - | chr3.1:84462211-84462230 | MS.gene32672:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.1:84460451-84460470 | None:intergenic | 50.0% | |
| AAGCAACTTGTGGATGTGCC+TGG | - | chr3.1:84460724-84460743 | MS.gene32672:CDS | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr3.1:84460396-84460415 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.1:84462328-84462347 | MS.gene32672:CDS | 50.0% | |
| ATTAATGCCGAGGCAGTACG+CGG | - | chr3.1:84462163-84462182 | MS.gene32672:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.1:84462029-84462048 | MS.gene32672:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.1:84460484-84460503 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.1:84460614-84460633 | None:intergenic | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | - | chr3.1:84461029-84461048 | MS.gene32672:intron | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3.1:84460795-84460814 | MS.gene32672:intron | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | - | chr3.1:84460981-84461000 | MS.gene32672:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.1:84460462-84460481 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3.1:84460786-84460805 | MS.gene32672:intron | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.1:84460463-84460482 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.1:84462040-84462059 | MS.gene32672:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3.1:84460785-84460804 | MS.gene32672:intron | 50.0% | |
| TGGCTAAGAAGAAGGCAGCT+TGG | - | chr3.1:84461022-84461041 | MS.gene32672:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.1:84460616-84460635 | MS.gene32672:CDS | 50.0% |
| ! | ACTTGCTGCTTCCATGACGA+TGG | - | chr3.1:84460600-84460619 | MS.gene32672:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr3.1:84461940-84461959 | MS.gene32672:CDS | 50.0% |
| AACTGGAGAGGGTGACAAGG+AGG | - | chr3.1:84460924-84460943 | MS.gene32672:intron | 55.0% | |
| AAGACGGAGCAGGATTGACC+GGG | + | chr3.1:84460370-84460389 | None:intergenic | 55.0% | |
| ACTGGAGAGGGTGACAAGGA+GGG | - | chr3.1:84460925-84460944 | MS.gene32672:intron | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | + | chr3.1:84460371-84460390 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.1:84462327-84462346 | MS.gene32672:CDS | 55.0% | |
| CTCAGCATCCCTTAGAGCCA+CGG | + | chr3.1:84461088-84461107 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.1:84460457-84460476 | MS.gene32672:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | - | chr3.1:84461032-84461051 | MS.gene32672:intron | 55.0% | |
| GAGAACTGGAGAGGGTGACA+AGG | - | chr3.1:84460921-84460940 | MS.gene32672:intron | 55.0% | |
| GATAAGGCTCCCATCCAAGC+AGG | + | chr3.1:84462340-84462359 | None:intergenic | 55.0% | |
| GCAACATGCCCGTTTGCTCA+TGG | + | chr3.1:84462315-84462334 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.1:84462028-84462047 | MS.gene32672:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+TGG | - | chr3.1:84461002-84461021 | MS.gene32672:intron | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | - | chr3.1:84461062-84461081 | MS.gene32672:intron | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.1:84460386-84460405 | None:intergenic | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | - | chr3.1:84460984-84461003 | MS.gene32672:intron | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | - | chr3.1:84460913-84460932 | MS.gene32672:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.1:84460606-84460625 | MS.gene32672:CDS | 55.0% | |
| TTCGCTGCAGAGAACTGGAG+AGG | - | chr3.1:84460912-84460931 | MS.gene32672:intron | 55.0% | |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr3.1:84460603-84460622 | MS.gene32672:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.1:84460477-84460496 | MS.gene32672:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.1:84461077-84461096 | MS.gene32672:intron | 55.0% |
| AAGGCTCCCATCCAAGCAGG+AGG | + | chr3.1:84462337-84462356 | None:intergenic | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | - | chr3.1:84461038-84461057 | MS.gene32672:intron | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | - | chr3.1:84461068-84461087 | MS.gene32672:intron | 60.0% | |
| CGGTCAATCCTGCTCCGTCT+TGG | - | chr3.1:84460369-84460388 | MS.gene32672:CDS | 60.0% | |
| CTCAAGTCCGCGTACTGCCT+CGG | + | chr3.1:84462173-84462192 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | - | chr3.1:84460381-84460400 | MS.gene32672:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | - | chr3.1:84461053-84461072 | MS.gene32672:intron | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | + | chr3.1:84460380-84460399 | None:intergenic | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.1:84461041-84461060 | MS.gene32672:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.1:84461076-84461095 | MS.gene32672:intron | 60.0% |
| CGGGCATGTTGCCTCCTGCT+TGG | - | chr3.1:84462323-84462342 | MS.gene32672:CDS | 65.0% | |
| GAGAGAGGCTGAAGTGGCGG+AGG | - | chr3.1:84460987-84461006 | MS.gene32672:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84460271 | 84462375 | 84460271 | ID=MS.gene32672 |
| chr3.1 | mRNA | 84460271 | 84462375 | 84460271 | ID=MS.gene32672.t1;Parent=MS.gene32672 |
| chr3.1 | exon | 84461443 | 84462375 | 84461443 | ID=MS.gene32672.t1.exon1;Parent=MS.gene32672.t1 |
| chr3.1 | CDS | 84461443 | 84462375 | 84461443 | ID=cds.MS.gene32672.t1;Parent=MS.gene32672.t1 |
| chr3.1 | exon | 84460271 | 84460780 | 84460271 | ID=MS.gene32672.t1.exon2;Parent=MS.gene32672.t1 |
| chr3.1 | CDS | 84460271 | 84460780 | 84460271 | ID=cds.MS.gene32672.t1;Parent=MS.gene32672.t1 |
| Gene Sequence |
| Protein sequence |
