Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80220.t1 | XP_003603332.1 | 92.7 | 478 | 35 | 0 | 1 | 478 | 3 | 480 | 5.20E-176 | 627.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80220.t1 | D2XNQ9 | 92.7 | 478 | 35 | 0 | 1 | 478 | 3 | 480 | 1.2e-178 | 627.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80220.t1 | G7JAE4 | 92.7 | 478 | 35 | 0 | 1 | 478 | 3 | 480 | 3.7e-176 | 627.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80220.t1 | MTR_3g106485 | 96.653 | 478 | 12 | 2 | 1 | 478 | 1 | 474 | 0.0 | 935 |
| MS.gene80220.t1 | MTR_3g106480 | 94.770 | 478 | 25 | 0 | 1 | 478 | 1 | 478 | 0.0 | 931 |
| MS.gene80220.t1 | MTR_3g106420 | 94.142 | 478 | 28 | 0 | 1 | 478 | 3 | 480 | 0.0 | 897 |
| MS.gene80220.t1 | MTR_1g115145 | 89.562 | 479 | 43 | 3 | 1 | 478 | 1 | 473 | 0.0 | 855 |
| MS.gene80220.t1 | MTR_1g073400 | 91.423 | 478 | 37 | 1 | 1 | 478 | 1 | 474 | 0.0 | 852 |
| MS.gene80220.t1 | MTR_1g083190 | 90.586 | 478 | 37 | 1 | 1 | 478 | 3 | 472 | 0.0 | 850 |
| MS.gene80220.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 840 |
| MS.gene80220.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 836 |
| MS.gene80220.t1 | MTR_3g106470 | 81.132 | 477 | 34 | 2 | 1 | 477 | 32 | 452 | 0.0 | 736 |
| MS.gene80220.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 674 |
| MS.gene80220.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 5.02e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80220.t1 | AT5G25260 | 73.573 | 473 | 113 | 2 | 1 | 473 | 1 | 461 | 0.0 | 727 |
| MS.gene80220.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 721 |
| MS.gene80220.t1 | AT5G64870 | 70.551 | 472 | 128 | 1 | 2 | 473 | 3 | 463 | 0.0 | 659 |
Find 117 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 3.4:-92873365 | MS.gene80220:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.4:-92873036 | MS.gene80220:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 3.4:-92871560 | MS.gene80220:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.4:-92873289 | MS.gene80220:CDS |
| TTAGTCCAAATGTTAATCTT+AGG | 0.325712 | 3.4:+92871482 | None:intergenic |
| TGTAGGTGCAAGAGGCTAAC+TGG | 0.327485 | 3.4:-92871814 | MS.gene80220:intron |
| CTCCCTGCCGTCTTCACAAT+TGG | 0.332748 | 3.4:-92873655 | MS.gene80220:CDS |
| CAATGCTAATGTTAAGCAAT+TGG | 0.346020 | 3.4:-92873401 | MS.gene80220:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.349522 | 3.4:+92873564 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.4:-92871348 | MS.gene80220:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.4:-92873436 | MS.gene80220:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.4:-92873276 | MS.gene80220:CDS |
| AAGATTAACATTTGGACTAA+TGG | 0.359631 | 3.4:-92871479 | MS.gene80220:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.4:-92873083 | MS.gene80220:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.373519 | 3.4:-92873814 | MS.gene80220:CDS |
| CGTATTTGAGGAGACTTTCA+TGG | 0.399951 | 3.4:+92873617 | None:intergenic |
| TTGAGCCTAAGATTAACATT+TGG | 0.412978 | 3.4:-92871487 | MS.gene80220:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.4:-92873074 | MS.gene80220:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 3.4:-92873188 | MS.gene80220:CDS |
| ATCATGAGGTGAAATAAGTT+TGG | 0.429079 | 3.4:+92873594 | None:intergenic |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.4:-92871464 | MS.gene80220:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.4:-92873559 | MS.gene80220:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 3.4:-92873134 | MS.gene80220:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.4:-92871762 | MS.gene80220:CDS |
| AAATAAGTTTGGCGTATTTG+AGG | 0.468280 | 3.4:+92873605 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.479699 | 3.4:-92873506 | MS.gene80220:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.4:-92873275 | MS.gene80220:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 3.4:-92873364 | MS.gene80220:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.4:-92871441 | MS.gene80220:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 3.4:-92873849 | None:intergenic |
| CTTTGCGTATAGCTCTGCTT+CGG | 0.490908 | 3.4:+92871679 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.4:-92871371 | MS.gene80220:CDS |
| GGACCAATTGTGAAGACGGC+AGG | 0.502590 | 3.4:+92873652 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 3.4:-92871352 | MS.gene80220:CDS |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 3.4:+92873501 | None:intergenic |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 3.4:-92871580 | MS.gene80220:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.4:-92873071 | MS.gene80220:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.512238 | 3.4:-92873050 | MS.gene80220:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.4:-92871347 | MS.gene80220:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.4:+92871363 | None:intergenic |
| GAAGACCGTGCATGATTGAC+CGG | 0.521386 | 3.4:+92873744 | None:intergenic |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.4:-92873090 | MS.gene80220:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.4:-92873388 | MS.gene80220:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.4:-92873035 | MS.gene80220:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.4:-92873098 | MS.gene80220:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.4:-92871440 | MS.gene80220:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92871424 | None:intergenic |
| CTCAAGTCCACGTACCGCCT+CGG | 0.541020 | 3.4:+92871505 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 3.4:-92873019 | MS.gene80220:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.4:-92873110 | MS.gene80220:CDS |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.4:-92871647 | MS.gene80220:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 3.4:-92873205 | MS.gene80220:CDS |
| GAGAACGAAAGGGAGTTTCT+CGG | 0.549947 | 3.4:+92873675 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.4:+92871338 | None:intergenic |
| AGTCGAGGCGAAGAAGGCCG+TGG | 0.552149 | 3.4:-92873044 | MS.gene80220:CDS |
| GTGACACTTGGGAATTCTCA+AGG | 0.554121 | 3.4:-92871635 | MS.gene80220:CDS |
| GTAGGTGCAAGAGGCTAACT+GGG | 0.558157 | 3.4:-92871813 | MS.gene80220:intron |
| TATCTTGCGATAACTGGTGC+CGG | 0.558862 | 3.4:-92873808 | MS.gene80220:CDS |
| TGCTAATGTTAAGCAATTGG+TGG | 0.560962 | 3.4:-92873398 | MS.gene80220:CDS |
| CACGGTCTTCGACCTCTCAC+CGG | 0.561698 | 3.4:-92873731 | MS.gene80220:CDS |
| GAATCAGAGAGAGGCTGAGG+TGG | 0.562176 | 3.4:-92873131 | MS.gene80220:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 3.4:-92873059 | MS.gene80220:CDS |
| CTGGATGTTGTAGGTGCAAG+AGG | 0.562730 | 3.4:-92871822 | MS.gene80220:intron |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 3.4:-92873547 | MS.gene80220:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.4:+92873664 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.4:-92871602 | MS.gene80220:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 3.4:+92873712 | None:intergenic |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 3.4:+92873495 | None:intergenic |
| CCTCGCTGCTTCCATGACCA+TGG | 0.573283 | 3.4:-92873512 | MS.gene80220:CDS |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 3.4:+92873719 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+TGG | 0.575987 | 3.4:-92871512 | MS.gene80220:CDS |
| ATTAACATTTGGACTAATGG+TGG | 0.579465 | 3.4:-92871476 | MS.gene80220:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92871422 | MS.gene80220:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 3.4:-92873774 | MS.gene80220:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.4:-92873210 | MS.gene80220:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.4:-92871463 | MS.gene80220:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 3.4:+92873648 | None:intergenic |
| AAGACCGTGCATGATTGACC+GGG | 0.595662 | 3.4:+92873745 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.4:-92871646 | MS.gene80220:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 3.4:-92871579 | MS.gene80220:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.4:-92871756 | MS.gene80220:CDS |
| GACCAATTGTGAAGACGGCA+GGG | 0.602478 | 3.4:+92873653 | None:intergenic |
| GCTCATAGCTTGAACTTCGA+AGG | 0.602578 | 3.4:+92873699 | None:intergenic |
| TTTCCCCGGTCAATCATGCA+CGG | 0.608303 | 3.4:-92873749 | MS.gene80220:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.4:-92873006 | MS.gene80220:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.4:-92873298 | MS.gene80220:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.4:+92871380 | None:intergenic |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.4:-92873347 | MS.gene80220:CDS |
| CGCTGCTTCCATGACCATGG+AGG | 0.624081 | 3.4:-92873509 | MS.gene80220:CDS |
| GGAAGCAGCGAATCAAGCTA+AGG | 0.627544 | 3.4:-92873326 | MS.gene80220:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 3.4:-92873546 | MS.gene80220:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.4:-92871461 | MS.gene80220:CDS |
| GATAACTGGTGCCGGAATCG+AGG | 0.630242 | 3.4:-92873800 | MS.gene80220:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.4:-92873271 | MS.gene80220:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.4:+92873665 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.4:-92873209 | MS.gene80220:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.634084 | 3.4:+92873027 | None:intergenic |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.4:-92871462 | MS.gene80220:CDS |
| GTTCATTAACGTGATTGGAG+TGG | 0.637668 | 3.4:+92873569 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 3.4:-92873848 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92871522 | MS.gene80220:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 3.4:-92873174 | MS.gene80220:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 3.4:-92872930 | MS.gene80220:intron |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.4:+92871383 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.4:-92873227 | MS.gene80220:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.4:-92873095 | MS.gene80220:CDS |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 3.4:+92873370 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.4:-92871557 | MS.gene80220:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.4:-92871519 | MS.gene80220:CDS |
| CTTTCATGGTCGTCAACACG+AGG | 0.664330 | 3.4:+92873631 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.4:+92871341 | None:intergenic |
| TGATTGGAGTGGCGATCATG+AGG | 0.675682 | 3.4:+92873580 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 3.4:-92873187 | MS.gene80220:CDS |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 3.4:-92873545 | MS.gene80220:CDS |
| AGACCGTGCATGATTGACCG+GGG | 0.723407 | 3.4:+92873746 | None:intergenic |
| CCATGGTCATGGAAGCAGCG+AGG | 0.728643 | 3.4:+92873512 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.4:-92873080 | MS.gene80220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTAAGATTATAACAT+GGG | + | chr3.4:92872568-92872587 | None:intergenic | 10.0% |
| !! | CATTATAAAACTAAATCATT+TGG | - | chr3.4:92873059-92873078 | MS.gene80220:CDS | 15.0% |
| !!! | ATATTTTAAAGGCTAAATAA+AGG | - | chr3.4:92872516-92872535 | MS.gene80220:intron | 15.0% |
| !!! | GTATATTTAAGATTATAACA+TGG | + | chr3.4:92872569-92872588 | None:intergenic | 15.0% |
| !! | ATATGTACAGTTTATTTACA+AGG | + | chr3.4:92872939-92872958 | None:intergenic | 20.0% |
| !! | ATATTTACAAAGATCATAGA+TGG | - | chr3.4:92872743-92872762 | MS.gene80220:intron | 20.0% |
| !! | ATTAGAAAAAGTTTGACATA+CGG | - | chr3.4:92873181-92873200 | MS.gene80220:CDS | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | - | chr3.4:92873368-92873387 | MS.gene80220:CDS | 20.0% |
| !! | ATTCAACTGATTATGTTATA+TGG | - | chr3.4:92872592-92872611 | MS.gene80220:intron | 20.0% |
| !! | CATACATTGATATAAAAAGA+TGG | - | chr3.4:92872962-92872981 | MS.gene80220:CDS | 20.0% |
| !! | GACAAATTAAACATTATACA+AGG | - | chr3.4:92872868-92872887 | MS.gene80220:intron | 20.0% |
| !! | TATTTACAAAGATCATAGAT+GGG | - | chr3.4:92872744-92872763 | MS.gene80220:intron | 20.0% |
| !! | TCTCATTATAGTTTAGTAAA+AGG | + | chr3.4:92872797-92872816 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTTTAAGTGC+TGG | - | chr3.4:92873304-92873323 | MS.gene80220:CDS | 20.0% |
| !!! | ATAATGTTTAATTTGTCGAT+TGG | + | chr3.4:92872865-92872884 | None:intergenic | 20.0% |
| !!! | TAATGTTTAATTTGTCGATT+GGG | + | chr3.4:92872864-92872883 | None:intergenic | 20.0% |
| ! | AAGAATAAGTTATAGTTGCA+TGG | + | chr3.4:92872258-92872277 | None:intergenic | 25.0% |
| ! | AAGATTAACATTTGGACTAA+TGG | - | chr3.4:92873678-92873697 | MS.gene80220:CDS | 25.0% |
| ! | ATAACAAGTATGTTGTATAC+GGG | - | chr3.4:92873268-92873287 | MS.gene80220:CDS | 25.0% |
| ! | CATAACAAGTATGTTGTATA+CGG | - | chr3.4:92873267-92873286 | MS.gene80220:CDS | 25.0% |
| ! | TAATATCTATTGAGACGTTT+AGG | - | chr3.4:92872386-92872405 | MS.gene80220:intron | 25.0% |
| ! | TATTTACAAGGTCTTAACTA+CGG | + | chr3.4:92872927-92872946 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATGTTAATCTT+AGG | + | chr3.4:92873678-92873697 | None:intergenic | 25.0% |
| ! | TTCTAATCGAAACAAAACAT+AGG | + | chr3.4:92873168-92873187 | None:intergenic | 25.0% |
| ! | TTTCAATGTATGTTGTATAC+TGG | - | chr3.4:92873217-92873236 | MS.gene80220:CDS | 25.0% |
| !! | GAGTTGGTTAAATTTGAAAA+GGG | + | chr3.4:92872424-92872443 | None:intergenic | 25.0% |
| !! | GTAAAAGTACACAACTAATT+TGG | + | chr3.4:92873122-92873141 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | - | chr3.4:92872678-92872697 | MS.gene80220:intron | 25.0% |
| !! | TTGATTGTTTGTTTCTCAAA+AGG | - | chr3.4:92872830-92872849 | MS.gene80220:intron | 25.0% |
| !!! | AATGTTTAATTTGTCGATTG+GGG | + | chr3.4:92872863-92872882 | None:intergenic | 25.0% |
| !!! | CACTGTAATTACAGTTTTTT+TGG | - | chr3.4:92872346-92872365 | MS.gene80220:intron | 25.0% |
| !!! | TGAGTTGGTTAAATTTGAAA+AGG | + | chr3.4:92872425-92872444 | None:intergenic | 25.0% |
| AAATAAGTTTGGCGTATTTG+AGG | + | chr3.4:92871555-92871574 | None:intergenic | 30.0% | |
| AGCGATAGAAGATTAATTCA+GGG | - | chr3.4:92872483-92872502 | MS.gene80220:intron | 30.0% | |
| AGTTTAGTAAAAGGCAAAGT+AGG | + | chr3.4:92872788-92872807 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | + | chr3.4:92871566-92871585 | None:intergenic | 30.0% | |
| ATCTGACTAAACTTTCATCA+TGG | - | chr3.4:92872992-92873011 | MS.gene80220:CDS | 30.0% | |
| ATTAACATTTGGACTAATGG+TGG | - | chr3.4:92873681-92873700 | MS.gene80220:CDS | 30.0% | |
| CAATGCTAATGTTAAGCAAT+TGG | - | chr3.4:92871756-92871775 | MS.gene80220:CDS | 30.0% | |
| GTTCAATATACAATAGTCCT+AGG | - | chr3.4:92872708-92872727 | MS.gene80220:intron | 30.0% | |
| GTTTAGTAAAAGGCAAAGTA+GGG | + | chr3.4:92872787-92872806 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | - | chr3.4:92871383-92871402 | MS.gene80220:CDS | 30.0% | |
| TATATTGAACCAAATCACCA+AGG | + | chr3.4:92872698-92872717 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAACATT+TGG | - | chr3.4:92873670-92873689 | MS.gene80220:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.4:92873597-92873616 | MS.gene80220:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.4:92873600-92873619 | MS.gene80220:CDS | 30.0% |
| !! | ATGTTTAATTTGTCGATTGG+GGG | + | chr3.4:92872862-92872881 | None:intergenic | 30.0% |
| !! | ATTTTACAACCTTGGTGATT+TGG | - | chr3.4:92872686-92872705 | MS.gene80220:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.4:92871721-92871740 | MS.gene80220:CDS | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | - | chr3.4:92871882-92871901 | MS.gene80220:intron | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | - | chr3.4:92873578-92873597 | MS.gene80220:CDS | 35.0% | |
| AACGAGTTCATTAACGTGAT+TGG | + | chr3.4:92871596-92871615 | None:intergenic | 35.0% | |
| AACTATAATGAGATCGCAGT+TGG | - | chr3.4:92872804-92872823 | MS.gene80220:intron | 35.0% | |
| AAGTAGCAAGATGCTAATTG+GGG | - | chr3.4:92872893-92872912 | MS.gene80220:intron | 35.0% | |
| ACTATAATGAGATCGCAGTT+GGG | - | chr3.4:92872805-92872824 | MS.gene80220:intron | 35.0% | |
| AGAAGTAGCAAGATGCTAAT+TGG | - | chr3.4:92872891-92872910 | MS.gene80220:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.4:92873395-92873414 | MS.gene80220:CDS | 35.0% | |
| ATCTATTGAGACGTTTAGGT+TGG | - | chr3.4:92872390-92872409 | MS.gene80220:intron | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | - | chr3.4:92871793-92871812 | MS.gene80220:CDS | 35.0% | |
| GAAAAAGTTTGACATACGGT+AGG | - | chr3.4:92873185-92873204 | MS.gene80220:CDS | 35.0% | |
| GAAGTAGCAAGATGCTAATT+GGG | - | chr3.4:92872892-92872911 | MS.gene80220:intron | 35.0% | |
| GAGCGATAGAAGATTAATTC+AGG | - | chr3.4:92872482-92872501 | MS.gene80220:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.4:92871868-92871887 | MS.gene80220:intron | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr3.4:92873488-92873507 | MS.gene80220:CDS | 35.0% | |
| GTTGAAATTCTGGATGTTGT+AGG | - | chr3.4:92873326-92873345 | MS.gene80220:CDS | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | - | chr3.4:92872227-92872246 | MS.gene80220:intron | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | - | chr3.4:92871792-92871811 | MS.gene80220:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | - | chr3.4:92871343-92871362 | MS.gene80220:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.4:92873780-92873799 | None:intergenic | 35.0% | |
| TGCTAATGTTAAGCAATTGG+TGG | - | chr3.4:92871759-92871778 | MS.gene80220:CDS | 35.0% | |
| TTTGACATACGGTAGGTAAA+TGG | - | chr3.4:92873192-92873211 | MS.gene80220:CDS | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.4:92873693-92873712 | MS.gene80220:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.4:92873694-92873713 | MS.gene80220:CDS | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.4:92873695-92873714 | MS.gene80220:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.4:92873838-92873857 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | - | chr3.4:92872017-92872036 | MS.gene80220:intron | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.4:92871881-92871900 | MS.gene80220:intron | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | - | chr3.4:92873316-92873335 | MS.gene80220:CDS | 35.0% |
| AATGACTCATGTCACTGAGT+TGG | + | chr3.4:92872440-92872459 | None:intergenic | 40.0% | |
| AGAAGCAGGGAATTAAAGTG+AGG | - | chr3.4:92871983-92872002 | MS.gene80220:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92873736-92873755 | None:intergenic | 40.0% | |
| AGGTCTTAACTACGGATTTG+CGG | + | chr3.4:92872919-92872938 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.4:92873555-92873574 | MS.gene80220:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.4:92872151-92872170 | MS.gene80220:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92873735-92873754 | MS.gene80220:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.4:92873496-92873515 | MS.gene80220:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr3.4:92871598-92871617 | MS.gene80220:CDS | 40.0% | |
| CGTATTTGAGGAGACTTTCA+TGG | + | chr3.4:92871543-92871562 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.4:92871930-92871949 | MS.gene80220:intron | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | - | chr3.4:92873577-92873596 | MS.gene80220:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92873635-92873654 | MS.gene80220:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.4:92873495-92873514 | MS.gene80220:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.4:92871859-92871878 | MS.gene80220:intron | 40.0% | |
| GTTCATTAACGTGATTGGAG+TGG | + | chr3.4:92871591-92871610 | None:intergenic | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | + | chr3.4:92871790-92871809 | None:intergenic | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | - | chr3.4:92871611-92871630 | MS.gene80220:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.4:92873777-92873796 | None:intergenic | 40.0% | |
| ! | AATAGTGGGGGAATAACTGA+AGG | - | chr3.4:92873708-92873727 | MS.gene80220:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.4:92873696-92873715 | MS.gene80220:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr3.4:92871448-92871467 | None:intergenic | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | + | chr3.4:92872247-92872266 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | + | chr3.4:92871330-92871349 | None:intergenic | 40.0% |
| ! | CATCAATTTTCGCTGCATTC+TGG | + | chr3.4:92871921-92871940 | None:intergenic | 40.0% |
| ! | GTTTGTTTCTCAAAAGGCAG+AGG | - | chr3.4:92872836-92872855 | MS.gene80220:intron | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.4:92872059-92872078 | MS.gene80220:intron | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+CGG | - | chr3.4:92871394-92871413 | MS.gene80220:CDS | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | - | chr3.4:92871886-92871905 | MS.gene80220:intron | 40.0% |
| !! | GAGTTTTATGTCCTCGATTC+CGG | + | chr3.4:92871371-92871390 | None:intergenic | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr3.4:92873786-92873805 | MS.gene80220:CDS | 45.0% | |
| AATATGCAGTGCACAGACCT+AGG | + | chr3.4:92872728-92872747 | None:intergenic | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr3.4:92871512-92871531 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.4:92873494-92873513 | MS.gene80220:CDS | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | - | chr3.4:92871612-92871631 | MS.gene80220:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr3.4:92872138-92872157 | MS.gene80220:intron | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr3.4:92871610-92871629 | MS.gene80220:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr3.4:92871948-92871967 | MS.gene80220:intron | 45.0% | |
| GAGAACGAAAGGGAGTTTCT+CGG | + | chr3.4:92871485-92871504 | None:intergenic | 45.0% | |
| GCTCATAGCTTGAACTTCGA+AGG | + | chr3.4:92871461-92871480 | None:intergenic | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.4:92872047-92872066 | MS.gene80220:intron | 45.0% | |
| GTGACACTTGGGAATTCTCA+AGG | - | chr3.4:92873522-92873541 | MS.gene80220:CDS | 45.0% | |
| TATCTTGCGATAACTGGTGC+CGG | - | chr3.4:92871349-92871368 | MS.gene80220:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92873401-92873420 | MS.gene80220:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.4:92873638-92873657 | MS.gene80220:CDS | 45.0% | |
| ! | CTTTGCGTATAGCTCTGCTT+CGG | + | chr3.4:92873481-92873500 | None:intergenic | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.4:92872062-92872081 | MS.gene80220:intron | 45.0% |
| !! | AGACGTTTAGGTTGGACTCT+TGG | - | chr3.4:92872398-92872417 | MS.gene80220:intron | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.4:92873717-92873736 | MS.gene80220:CDS | 45.0% |
| !!! | AAATTTTTAAAAAAATTTAG+CGG | + | chr3.4:92872660-92872679 | None:intergenic | 5.0% |
| !!! | GATATTTTTTAATATTTTAA+AGG | - | chr3.4:92872505-92872524 | MS.gene80220:intron | 5.0% |
| AAGACCGTGCATGATTGACC+GGG | + | chr3.4:92871415-92871434 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr3.4:92871441-92871460 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.4:92873810-92873829 | MS.gene80220:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.4:92873511-92873530 | MS.gene80220:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr3.4:92871947-92871966 | MS.gene80220:intron | 50.0% | |
| CTGGATGTTGTAGGTGCAAG+AGG | - | chr3.4:92873335-92873354 | MS.gene80220:CDS | 50.0% | |
| CTTTCATGGTCGTCAACACG+AGG | + | chr3.4:92871529-92871548 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | + | chr3.4:92871659-92871678 | None:intergenic | 50.0% | |
| GAAGACCGTGCATGATTGAC+CGG | + | chr3.4:92871416-92871435 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACGGCA+GGG | + | chr3.4:92871507-92871526 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr3.4:92873797-92873816 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | - | chr3.4:92871970-92871989 | MS.gene80220:intron | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+AGG | - | chr3.4:92871831-92871850 | MS.gene80220:intron | 50.0% | |
| GTAGGTGCAAGAGGCTAACT+GGG | - | chr3.4:92873344-92873363 | MS.gene80220:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | - | chr3.4:92872023-92872042 | MS.gene80220:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+AGG | + | chr3.4:92871580-92871599 | None:intergenic | 50.0% | |
| TGTAGGTGCAAGAGGCTAAC+TGG | - | chr3.4:92873343-92873362 | MS.gene80220:CDS | 50.0% | |
| TTTCCCCGGTCAATCATGCA+CGG | - | chr3.4:92871408-92871427 | MS.gene80220:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr3.4:92871769-92871788 | MS.gene80220:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | - | chr3.4:92871661-92871680 | MS.gene80220:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | - | chr3.4:92873422-92873441 | MS.gene80220:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | + | chr3.4:92871665-92871684 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | - | chr3.4:92871810-92871829 | MS.gene80220:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.4:92873716-92873735 | MS.gene80220:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | + | chr3.4:92871496-92871515 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.4:92873819-92873838 | None:intergenic | 55.0% | |
| AGACCGTGCATGATTGACCG+GGG | + | chr3.4:92871414-92871433 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | + | chr3.4:92871495-92871514 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+TGG | - | chr3.4:92873645-92873664 | MS.gene80220:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.4:92873809-92873828 | MS.gene80220:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.4:92872133-92872152 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+TGG | - | chr3.4:92871502-92871521 | MS.gene80220:CDS | 55.0% | |
| GAATCAGAGAGAGGCTGAGG+TGG | - | chr3.4:92872026-92872045 | MS.gene80220:intron | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.4:92873510-92873529 | MS.gene80220:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr3.4:92871508-92871527 | None:intergenic | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | - | chr3.4:92871969-92871988 | MS.gene80220:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.4:92873822-92873841 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.4:92871952-92871971 | MS.gene80220:intron | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | - | chr3.4:92871651-92871670 | MS.gene80220:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.4:92872067-92872086 | MS.gene80220:intron | 55.0% | |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.4:92872074-92872093 | MS.gene80220:intron | 55.0% |
| ! | GATAACTGGTGCCGGAATCG+AGG | - | chr3.4:92871357-92871376 | MS.gene80220:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.4:92872122-92872141 | MS.gene80220:intron | 55.0% |
| CACGGTCTTCGACCTCTCAC+CGG | - | chr3.4:92871426-92871445 | MS.gene80220:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.4:92873805-92873824 | MS.gene80220:CDS | 60.0% | |
| CCATGGTCATGGAAGCAGCG+AGG | + | chr3.4:92871648-92871667 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACCA+TGG | - | chr3.4:92871645-92871664 | MS.gene80220:CDS | 60.0% | |
| CGCTGCTTCCATGACCATGG+AGG | - | chr3.4:92871648-92871667 | MS.gene80220:CDS | 60.0% | |
| CTCAAGTCCACGTACCGCCT+CGG | + | chr3.4:92873655-92873674 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | - | chr3.4:92872107-92872126 | MS.gene80220:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.4:92872086-92872105 | MS.gene80220:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.4:92872121-92872140 | MS.gene80220:intron | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.4:92872077-92872096 | MS.gene80220:intron | 60.0% |
| AGTCGAGGCGAAGAAGGCCG+TGG | - | chr3.4:92872113-92872132 | MS.gene80220:intron | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr3.4:92872098-92872117 | MS.gene80220:intron | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.4:92872083-92872102 | MS.gene80220:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92871322 | 92873857 | 92871322 | ID=MS.gene80220 |
| chr3.4 | mRNA | 92871322 | 92873857 | 92871322 | ID=MS.gene80220.t1;Parent=MS.gene80220 |
| chr3.4 | exon | 92872931 | 92873857 | 92872931 | ID=MS.gene80220.t1.exon1;Parent=MS.gene80220.t1 |
| chr3.4 | CDS | 92872931 | 92873857 | 92872931 | ID=cds.MS.gene80220.t1;Parent=MS.gene80220.t1 |
| chr3.4 | exon | 92871322 | 92871831 | 92871322 | ID=MS.gene80220.t1.exon2;Parent=MS.gene80220.t1 |
| chr3.4 | CDS | 92871322 | 92871831 | 92871322 | ID=cds.MS.gene80220.t1;Parent=MS.gene80220.t1 |
| Gene Sequence |
| Protein sequence |
