Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60573.t1 | XP_003603332.1 | 90 | 478 | 48 | 0 | 1 | 478 | 3 | 480 | 3.60E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60573.t1 | D2XNQ9 | 90.0 | 478 | 48 | 0 | 1 | 478 | 3 | 480 | 8.6e-172 | 604.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60573.t1 | G7JAE4 | 90.0 | 478 | 48 | 0 | 1 | 478 | 3 | 480 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60573.t1 | MTR_3g106485 | 97.071 | 478 | 10 | 2 | 1 | 478 | 1 | 474 | 0.0 | 934 |
| MS.gene60573.t1 | MTR_3g106480 | 94.351 | 478 | 27 | 0 | 1 | 478 | 1 | 478 | 0.0 | 920 |
| MS.gene60573.t1 | MTR_3g106420 | 93.515 | 478 | 31 | 0 | 1 | 478 | 3 | 480 | 0.0 | 890 |
| MS.gene60573.t1 | MTR_1g115145 | 89.562 | 479 | 43 | 3 | 1 | 478 | 1 | 473 | 0.0 | 848 |
| MS.gene60573.t1 | MTR_1g073400 | 91.004 | 478 | 39 | 1 | 1 | 478 | 1 | 474 | 0.0 | 845 |
| MS.gene60573.t1 | MTR_1g083190 | 90.377 | 478 | 38 | 1 | 1 | 478 | 3 | 472 | 0.0 | 844 |
| MS.gene60573.t1 | MTR_1g071130 | 85.774 | 478 | 39 | 2 | 1 | 478 | 1 | 449 | 0.0 | 835 |
| MS.gene60573.t1 | MTR_3g106430 | 90.985 | 477 | 39 | 2 | 1 | 477 | 1 | 473 | 0.0 | 827 |
| MS.gene60573.t1 | MTR_3g106470 | 81.761 | 477 | 31 | 2 | 1 | 477 | 32 | 452 | 0.0 | 739 |
| MS.gene60573.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 669 |
| MS.gene60573.t1 | MTR_3g065540 | 63.478 | 115 | 15 | 1 | 40 | 154 | 14 | 101 | 8.35e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60573.t1 | AT5G25260 | 74.473 | 474 | 109 | 2 | 1 | 474 | 1 | 462 | 0.0 | 731 |
| MS.gene60573.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 714 |
| MS.gene60573.t1 | AT5G64870 | 70.127 | 472 | 130 | 1 | 2 | 473 | 3 | 463 | 0.0 | 651 |
Find 112 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 1.2:+69106319 | MS.gene60573:CDS |
| GGTCCAAGCCGCCTTCTTCT+TGG | 0.241127 | 1.2:-69106597 | None:intergenic |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 1.2:+69107704 | MS.gene60573:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.284832 | 1.2:+69106248 | MS.gene60573:CDS |
| AGAGATTACTTGATGATAAA+TGG | 0.307216 | 1.2:+69107631 | MS.gene60573:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1.2:-69106120 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.2:+69106648 | MS.gene60573:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.317732 | 1.2:+69107843 | MS.gene60573:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.318803 | 1.2:+69107377 | MS.gene60573:intron |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.2:+69106395 | MS.gene60573:CDS |
| GGGAATAACTGAAGGTGCTT+TGG | 0.334626 | 1.2:+69107750 | MS.gene60573:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 1.2:+69106408 | MS.gene60573:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.374224 | 1.2:+69105870 | MS.gene60573:CDS |
| GGAATAACTGAAGGTGCTTT+GGG | 0.383533 | 1.2:+69107751 | MS.gene60573:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 1.2:-69107709 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.2:+69106283 | MS.gene60573:CDS |
| CGGTCCTCGTGTTGACGATC+AGG | 0.397698 | 1.2:+69106049 | MS.gene60573:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.398702 | 1.2:+69106610 | MS.gene60573:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 1.2:+69106496 | MS.gene60573:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1.2:+69106125 | MS.gene60573:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 1.2:-69106618 | None:intergenic |
| GAAGAAGGCGGCTTGGACCA+AGG | 0.448835 | 1.2:+69106601 | MS.gene60573:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 1.2:+69107724 | MS.gene60573:CDS |
| ATCATGGGGTGAAATAAGTT+TGG | 0.453058 | 1.2:-69106090 | None:intergenic |
| AACTTGAGTTGAATCAATTC+GGG | 0.454308 | 1.2:+69106249 | MS.gene60573:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 1.2:+69106550 | MS.gene60573:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.2:+69107429 | MS.gene60573:CDS |
| CTCCCTGCCGTCTTCACTAT+CGG | 0.465580 | 1.2:+69106029 | MS.gene60573:CDS |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 1.2:+69106634 | MS.gene60573:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.2:+69106613 | MS.gene60573:CDS |
| CGGGCATGTTGCCTCCTGCT+TGG | 0.479649 | 1.2:+69107839 | MS.gene60573:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.480875 | 1.2:+69107844 | MS.gene60573:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 1.2:+69106409 | MS.gene60573:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 1.2:+69106320 | MS.gene60573:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 1.2:+69105835 | None:intergenic |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 1.2:-69107686 | None:intergenic |
| TAAGACTGTCCATGAGCAAA+CGG | 0.494142 | 1.2:+69107819 | MS.gene60573:CDS |
| CATGATTGGAGTGTCTATCA+TGG | 0.495785 | 1.2:-69106106 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.495947 | 1.2:+69106178 | MS.gene60573:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.497958 | 1.2:+69106137 | MS.gene60573:CDS |
| AACTAAGAAGGTATAGTTCA+CGG | 0.503038 | 1.2:-69105973 | None:intergenic |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 1.2:-69106183 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 1.2:+69106357 | MS.gene60573:CDS |
| TTCTGAGTTGGCCAAGAAGA+AGG | 0.512333 | 1.2:+69106586 | MS.gene60573:CDS |
| GGACCGATAGTGAAGACGGC+AGG | 0.514852 | 1.2:-69106032 | None:intergenic |
| AAGACGGCAGGGAGAACGAA+AGG | 0.516090 | 1.2:-69106020 | None:intergenic |
| TTGGGTATGAAAGAAGTTGC+TGG | 0.521288 | 1.2:+69107769 | MS.gene60573:CDS |
| GCAACATGCCCGTTTGCTCA+TGG | 0.523503 | 1.2:-69107828 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.2:+69106296 | MS.gene60573:CDS |
| ACTCATAGCTTGAACTAAGA+AGG | 0.526930 | 1.2:-69105985 | None:intergenic |
| TGCTGAGGCTAATTCTGAGT+TGG | 0.528368 | 1.2:+69106574 | MS.gene60573:CDS |
| AAGACTGTCCATGAGCAAAC+GGG | 0.532359 | 1.2:+69107820 | MS.gene60573:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.2:-69106076 | None:intergenic |
| TGGCCAAGAAGAAGGCGGCT+TGG | 0.538797 | 1.2:+69106594 | MS.gene60573:CDS |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 1.2:+69106665 | MS.gene60573:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 1.2:+69106625 | MS.gene60573:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.2:+69106649 | MS.gene60573:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 1.2:+69106479 | MS.gene60573:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.550232 | 1.2:+69107378 | MS.gene60573:intron |
| AGGTATAGTTCACGGGTGAA+AGG | 0.550393 | 1.2:-69105965 | None:intergenic |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 1.2:-69107853 | None:intergenic |
| CTGGATGCTGTAGGTACAAG+AGG | 0.556449 | 1.2:+69107369 | MS.gene60573:intron |
| CCTAGCTGCTTCCATGACCA+TGG | 0.557417 | 1.2:+69106172 | MS.gene60573:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.2:+69106640 | MS.gene60573:CDS |
| CCATGGTCATGGAAGCAGCT+AGG | 0.558898 | 1.2:-69106172 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.2:+69106286 | MS.gene60573:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 1.2:+69107712 | MS.gene60573:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.2:+69107589 | MS.gene60573:CDS |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 1.2:-69106189 | None:intergenic |
| TATCTTGCGATAACTGGTGT+AGG | 0.573302 | 1.2:+69105876 | MS.gene60573:CDS |
| ACTAAGAAGGTATAGTTCAC+GGG | 0.573332 | 1.2:-69105972 | None:intergenic |
| GCAGAGGGGATTGAGACACT+TGG | 0.575929 | 1.2:+69107544 | MS.gene60573:CDS |
| GAGAGAGGCTGAGGTTGCTG+AGG | 0.577125 | 1.2:+69106559 | MS.gene60573:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 1.2:+69105910 | MS.gene60573:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.2:+69106474 | MS.gene60573:CDS |
| ATGATTGGAGTGTCTATCAT+GGG | 0.587404 | 1.2:-69106105 | None:intergenic |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 1.2:+69107730 | MS.gene60573:CDS |
| GACCGATAGTGAAGACGGCA+GGG | 0.602102 | 1.2:-69106031 | None:intergenic |
| GAGACACTTGGAAATGCTCA+AGG | 0.604890 | 1.2:+69107556 | MS.gene60573:CDS |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 1.2:+69107729 | MS.gene60573:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.2:+69106386 | MS.gene60573:CDS |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 1.2:+69106337 | MS.gene60573:CDS |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 1.2:+69107728 | MS.gene60573:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 1.2:+69106413 | MS.gene60573:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 1.2:-69106019 | None:intergenic |
| GGAAGCTGAGTTACAAGGTG+AGG | 0.633609 | 1.2:+69106670 | MS.gene60573:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.2:+69106475 | MS.gene60573:CDS |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 1.2:+69106358 | MS.gene60573:CDS |
| ACGAGGACCGATAGTGAAGA+CGG | 0.639502 | 1.2:-69106036 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 1.2:+69105836 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 1.2:+69107669 | MS.gene60573:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 1.2:+69106510 | MS.gene60573:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 1.2:+69106754 | MS.gene60573:CDS |
| TTGCTTGCGAGCATAAAATG+TGG | 0.652025 | 1.2:-69107485 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.2:+69106457 | MS.gene60573:CDS |
| AAGAAAGCATGGATTTACCC+TGG | 0.654675 | 1.2:+69105921 | MS.gene60573:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.2:-69107808 | None:intergenic |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 1.2:-69106314 | None:intergenic |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.2:-69107811 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 1.2:+69107672 | MS.gene60573:CDS |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 1.2:-69107850 | None:intergenic |
| TGAGTTGGCCAAGAAGAAGG+CGG | 0.669725 | 1.2:+69106589 | MS.gene60573:CDS |
| AGCTGCTTCCATGACCATGG+AGG | 0.676991 | 1.2:+69106175 | MS.gene60573:CDS |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 1.2:+69107679 | MS.gene60573:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.681438 | 1.2:+69107634 | MS.gene60573:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.2:+69106367 | MS.gene60573:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 1.2:+69107715 | MS.gene60573:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.2:-69106053 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 1.2:+69106497 | MS.gene60573:CDS |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 1.2:+69107727 | MS.gene60573:CDS |
| GAAGGCGGCTTGGACCAAGG+CGG | 0.742023 | 1.2:+69106604 | MS.gene60573:CDS |
| TGATTGGAGTGTCTATCATG+GGG | 0.776734 | 1.2:-69106104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTAAATCATTTGATAA+CGG | + | chr1.2:69107001-69107020 | MS.gene60573:intron | 15.0% |
| !! | AAAAGTAAAACATAACAAGT+AGG | + | chr1.2:69107291-69107310 | MS.gene60573:intron | 20.0% |
| !! | AGCAAATAATATATGTTCAA+CGG | - | chr1.2:69106963-69106982 | None:intergenic | 20.0% |
| !! | TCATGTTAAAAAAATTGACA+CGG | - | chr1.2:69107260-69107279 | None:intergenic | 20.0% |
| !! | TGCATATTGATATAAAAAGA+TGG | + | chr1.2:69106898-69106917 | MS.gene60573:intron | 20.0% |
| !! | TTAAGAAAAAGATAGACATA+TGG | + | chr1.2:69107186-69107205 | MS.gene60573:intron | 20.0% |
| !!! | ATTCCAAATTAGTTTTGTTA+AGG | + | chr1.2:69107071-69107090 | MS.gene60573:intron | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr1.2:69106123-69106142 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | + | chr1.2:69107712-69107731 | MS.gene60573:CDS | 25.0% |
| ! | GCATATATATTGAAGAATGT+TGG | + | chr1.2:69107219-69107238 | MS.gene60573:intron | 25.0% |
| ! | TCTTAATCGAAACAAAACAT+AGG | - | chr1.2:69107172-69107191 | None:intergenic | 25.0% |
| ! | TGTCCTTAACAAAACTAATT+TGG | - | chr1.2:69107077-69107096 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.2:69107712-69107731 | None:intergenic | 25.0% |
| !! | AGAGATTACTTGATGATAAA+TGG | + | chr1.2:69107631-69107650 | MS.gene60573:CDS | 25.0% |
| !! | CTTAATTGAAGTATTACTCT+TGG | - | chr1.2:69106844-69106863 | None:intergenic | 25.0% |
| !!! | AATGTTTATTTTCTAAGTGC+TGG | + | chr1.2:69107338-69107357 | MS.gene60573:intron | 25.0% |
| AACAAGAAGTTATAGTTGCA+TGG | - | chr1.2:69106785-69106804 | None:intergenic | 30.0% | |
| AAGTACACAAACTAATAGCA+AGG | - | chr1.2:69107122-69107141 | None:intergenic | 30.0% | |
| AGTACACAAACTAATAGCAA+GGG | - | chr1.2:69107121-69107140 | None:intergenic | 30.0% | |
| ATAACAAGTAGGTTGTATAC+TGG | + | chr1.2:69107302-69107321 | MS.gene60573:intron | 30.0% | |
| ATAGACATATGGTAGGTAAA+TGG | + | chr1.2:69107197-69107216 | MS.gene60573:intron | 30.0% | |
| ATCTGATCAAACTTTCATCA+TGG | + | chr1.2:69106928-69106947 | MS.gene60573:intron | 30.0% | |
| GAAAAAGATAGACATATGGT+AGG | + | chr1.2:69107190-69107209 | MS.gene60573:intron | 30.0% | |
| GTTAAAAAAATTGACACGGT+TGG | - | chr1.2:69107256-69107275 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | + | chr1.2:69105910-69105929 | MS.gene60573:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr1.2:69107704-69107723 | MS.gene60573:CDS | 30.0% | |
| ! | AACTAAGAAGGTATAGTTCA+CGG | - | chr1.2:69105976-69105995 | None:intergenic | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | chr1.2:69106125-69106144 | MS.gene60573:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.2:69107634-69107653 | MS.gene60573:CDS | 30.0% |
| !! | AACTTGAGTTGAATCAATTC+GGG | + | chr1.2:69106249-69106268 | MS.gene60573:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr1.2:69106248-69106267 | MS.gene60573:CDS | 30.0% |
| !! | TAGTTTGTGTACTTTTACTC+AGG | + | chr1.2:69107128-69107147 | MS.gene60573:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | chr1.2:69106409-69106428 | MS.gene60573:CDS | 30.0% |
| ACTCATAGCTTGAACTAAGA+AGG | - | chr1.2:69105988-69106007 | None:intergenic | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.2:69107429-69107448 | MS.gene60573:CDS | 35.0% | |
| ATCATGGGGTGAAATAAGTT+TGG | - | chr1.2:69106093-69106112 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | + | chr1.2:69107715-69107734 | MS.gene60573:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.2:69106283-69106302 | MS.gene60573:CDS | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | + | chr1.2:69106320-69106339 | MS.gene60573:CDS | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | + | chr1.2:69106137-69106156 | MS.gene60573:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr1.2:69106395-69106414 | MS.gene60573:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.2:69107522-69107541 | MS.gene60573:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr1.2:69106079-69106098 | None:intergenic | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | + | chr1.2:69106754-69106773 | MS.gene60573:CDS | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | + | chr1.2:69106319-69106338 | MS.gene60573:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | + | chr1.2:69105870-69105889 | MS.gene60573:CDS | 35.0% | |
| ! | ACTAAGAAGGTATAGTTCAC+GGG | - | chr1.2:69105975-69105994 | None:intergenic | 35.0% |
| ! | ATGATTGGAGTGTCTATCAT+GGG | - | chr1.2:69106108-69106127 | None:intergenic | 35.0% |
| ! | TCAAGAGCTTTTGTCAGATA+AGG | - | chr1.2:69107872-69107891 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | + | chr1.2:69106544-69106563 | MS.gene60573:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr1.2:69106408-69106427 | MS.gene60573:CDS | 35.0% |
| AGAAGCAGGGAATTAAAGTG+AGG | + | chr1.2:69106510-69106529 | MS.gene60573:CDS | 40.0% | |
| AGGGATCCATGATTTAGACT+TGG | - | chr1.2:69107102-69107121 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr1.2:69107589-69107608 | MS.gene60573:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr1.2:69107530-69107549 | MS.gene60573:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr1.2:69106457-69106476 | MS.gene60573:CDS | 40.0% | |
| GACATGCCAAGTCTAAATCA+TGG | + | chr1.2:69107093-69107112 | MS.gene60573:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr1.2:69107669-69107688 | MS.gene60573:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr1.2:69107529-69107548 | MS.gene60573:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTGT+AGG | + | chr1.2:69107360-69107379 | MS.gene60573:intron | 40.0% | |
| TAAGACTGTCCATGAGCAAA+CGG | + | chr1.2:69107819-69107838 | MS.gene60573:CDS | 40.0% | |
| TATCTTGCGATAACTGGTGT+AGG | + | chr1.2:69105876-69105895 | MS.gene60573:CDS | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | - | chr1.2:69106317-69106336 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.2:69107814-69107833 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.2:69106286-69106305 | MS.gene60573:CDS | 40.0% | |
| TTACCCTGGTCAAAAATGCA+CGG | + | chr1.2:69105935-69105954 | MS.gene60573:CDS | 40.0% | |
| TTGCTTGCGAGCATAAAATG+TGG | - | chr1.2:69107488-69107507 | None:intergenic | 40.0% | |
| TTGGGTATGAAAGAAGTTGC+TGG | + | chr1.2:69107769-69107788 | MS.gene60573:CDS | 40.0% | |
| ! | AAGAAAGCATGGATTTACCC+TGG | + | chr1.2:69105921-69105940 | MS.gene60573:CDS | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | - | chr1.2:69106774-69106793 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | chr1.2:69105857-69105876 | None:intergenic | 40.0% |
| ! | CATGATTGGAGTGTCTATCA+TGG | - | chr1.2:69106109-69106128 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGGAGTTTTT+CGG | - | chr1.2:69106012-69106031 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+GGG | - | chr1.2:69106107-69106126 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | chr1.2:69106413-69106432 | MS.gene60573:CDS | 40.0% |
| !! | CTAAGTGCTGGTTGAAATTC+TGG | + | chr1.2:69107350-69107369 | MS.gene60573:intron | 40.0% |
| !! | GGAATAACTGAAGGTGCTTT+GGG | + | chr1.2:69107751-69107770 | MS.gene60573:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+GGG | + | chr1.2:69107820-69107839 | MS.gene60573:CDS | 45.0% | |
| AGGTATAGTTCACGGGTGAA+AGG | - | chr1.2:69105968-69105987 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | chr1.2:69107528-69107547 | MS.gene60573:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | + | chr1.2:69106665-69106684 | MS.gene60573:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | + | chr1.2:69106475-69106494 | MS.gene60573:CDS | 45.0% | |
| GAGACACTTGGAAATGCTCA+AGG | + | chr1.2:69107556-69107575 | MS.gene60573:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | + | chr1.2:69107378-69107397 | MS.gene60573:intron | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.2:69106386-69106405 | MS.gene60573:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr1.2:69107672-69107691 | MS.gene60573:CDS | 45.0% | |
| TGCTGAGGCTAATTCTGAGT+TGG | + | chr1.2:69106574-69106593 | MS.gene60573:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.2:69107811-69107830 | None:intergenic | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | + | chr1.2:69107724-69107743 | MS.gene60573:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | + | chr1.2:69107377-69107396 | MS.gene60573:intron | 45.0% | |
| ! | AAGACCGTGCATTTTTGACC+AGG | - | chr1.2:69105942-69105961 | None:intergenic | 45.0% |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr1.2:69107742-69107761 | MS.gene60573:CDS | 45.0% |
| ! | AGACCGTGCATTTTTGACCA+GGG | - | chr1.2:69105941-69105960 | None:intergenic | 45.0% |
| ! | AGCAGAAGCGCAAAAAGCAT+TGG | + | chr1.2:69107456-69107475 | MS.gene60573:CDS | 45.0% |
| ! | TTCTGAGTTGGCCAAGAAGA+AGG | + | chr1.2:69106586-69106605 | MS.gene60573:CDS | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | + | chr1.2:69107727-69107746 | MS.gene60573:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | + | chr1.2:69107728-69107747 | MS.gene60573:CDS | 45.0% |
| !! | GGGAATAACTGAAGGTGCTT+TGG | + | chr1.2:69107750-69107769 | MS.gene60573:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | + | chr1.2:69107729-69107748 | MS.gene60573:CDS | 45.0% |
| ACGAGGACCGATAGTGAAGA+CGG | - | chr1.2:69106039-69106058 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.2:69107844-69107863 | MS.gene60573:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | + | chr1.2:69106474-69106493 | MS.gene60573:CDS | 50.0% | |
| CTGGATGCTGTAGGTACAAG+AGG | + | chr1.2:69107369-69107388 | MS.gene60573:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.2:69106056-69106075 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | - | chr1.2:69106186-69106205 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.2:69106367-69106386 | MS.gene60573:CDS | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | - | chr1.2:69107856-69107875 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | + | chr1.2:69106497-69106516 | MS.gene60573:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.2:69106358-69106377 | MS.gene60573:CDS | 50.0% | |
| GGAAGCTGAGTTACAAGGTG+AGG | + | chr1.2:69106670-69106689 | MS.gene60573:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | + | chr1.2:69106550-69106569 | MS.gene60573:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.2:69106357-69106376 | MS.gene60573:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.2:69106296-69106315 | MS.gene60573:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | + | chr1.2:69106188-69106207 | MS.gene60573:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | - | chr1.2:69106192-69106211 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | + | chr1.2:69106337-69106356 | MS.gene60573:CDS | 50.0% |
| ! | TGAGTTGGCCAAGAAGAAGG+CGG | + | chr1.2:69106589-69106608 | MS.gene60573:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | + | chr1.2:69107730-69107749 | MS.gene60573:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | chr1.2:69106649-69106668 | MS.gene60573:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | - | chr1.2:69106023-69106042 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | chr1.2:69107853-69107872 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | chr1.2:69106022-69106041 | None:intergenic | 55.0% | |
| AGCTGCTTCCATGACCATGG+AGG | + | chr1.2:69106175-69106194 | MS.gene60573:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | chr1.2:69106640-69106659 | MS.gene60573:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr1.2:69107679-69107698 | MS.gene60573:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.2:69107843-69107862 | MS.gene60573:CDS | 55.0% | |
| CCATGGTCATGGAAGCAGCT+AGG | - | chr1.2:69106175-69106194 | None:intergenic | 55.0% | |
| CCTAGCTGCTTCCATGACCA+TGG | + | chr1.2:69106172-69106191 | MS.gene60573:CDS | 55.0% | |
| CTCCCTGCCGTCTTCACTAT+CGG | + | chr1.2:69106029-69106048 | MS.gene60573:CDS | 55.0% | |
| GACCGATAGTGAAGACGGCA+GGG | - | chr1.2:69106034-69106053 | None:intergenic | 55.0% | |
| GCAACATGCCCGTTTGCTCA+TGG | - | chr1.2:69107831-69107850 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGAGACACT+TGG | + | chr1.2:69107544-69107563 | MS.gene60573:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | chr1.2:69106634-69106653 | MS.gene60573:CDS | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | + | chr1.2:69106496-69106515 | MS.gene60573:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr1.2:69106479-69106498 | MS.gene60573:CDS | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | + | chr1.2:69106178-69106197 | MS.gene60573:CDS | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | chr1.2:69106648-69106667 | MS.gene60573:CDS | 55.0% |
| GAGAGAGGCTGAGGTTGCTG+AGG | + | chr1.2:69106559-69106578 | MS.gene60573:CDS | 60.0% | |
| GGACCGATAGTGAAGACGGC+AGG | - | chr1.2:69106035-69106054 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | chr1.2:69106625-69106644 | MS.gene60573:CDS | 60.0% | |
| GGTCCAAGCCGCCTTCTTCT+TGG | - | chr1.2:69106600-69106619 | None:intergenic | 60.0% | |
| TGGCCAAGAAGAAGGCGGCT+TGG | + | chr1.2:69106594-69106613 | MS.gene60573:CDS | 60.0% | |
| ! | CGGTCCTCGTGTTGACGATC+AGG | + | chr1.2:69106049-69106068 | MS.gene60573:CDS | 60.0% |
| ! | GAAGAAGGCGGCTTGGACCA+AGG | + | chr1.2:69106601-69106620 | MS.gene60573:CDS | 60.0% |
| CGGGCATGTTGCCTCCTGCT+TGG | + | chr1.2:69107839-69107858 | MS.gene60573:CDS | 65.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | - | chr1.2:69107689-69107708 | None:intergenic | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | - | chr1.2:69106621-69106640 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | chr1.2:69106613-69106632 | MS.gene60573:CDS | 65.0% | |
| ! | GAAGGCGGCTTGGACCAAGG+CGG | + | chr1.2:69106604-69106623 | MS.gene60573:CDS | 65.0% |
| GGCTTGGACCAAGGCGGCTC+AGG | + | chr1.2:69106610-69106629 | MS.gene60573:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 69105849 | 69107891 | 69105849 | ID=MS.gene60573 |
| chr1.2 | mRNA | 69105849 | 69107891 | 69105849 | ID=MS.gene60573.t1;Parent=MS.gene60573 |
| chr1.2 | exon | 69105849 | 69106775 | 69105849 | ID=MS.gene60573.t1.exon1;Parent=MS.gene60573.t1 |
| chr1.2 | CDS | 69105849 | 69106775 | 69105849 | ID=cds.MS.gene60573.t1;Parent=MS.gene60573.t1 |
| chr1.2 | exon | 69107382 | 69107891 | 69107382 | ID=MS.gene60573.t1.exon2;Parent=MS.gene60573.t1 |
| chr1.2 | CDS | 69107382 | 69107891 | 69107382 | ID=cds.MS.gene60573.t1;Parent=MS.gene60573.t1 |
| Gene Sequence |
| Protein sequence |
