Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072849.t1 | XP_003603332.1 | 90.2 | 480 | 47 | 0 | 1 | 480 | 1 | 480 | 2.60E-167 | 598.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072849.t1 | D2XNQ9 | 90.2 | 480 | 47 | 0 | 1 | 480 | 1 | 480 | 6.2e-170 | 598.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072849.t1 | G7JAE4 | 90.2 | 480 | 47 | 0 | 1 | 480 | 1 | 480 | 1.9e-167 | 598.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072849.t1 | MTR_3g106420 | 96.875 | 480 | 15 | 0 | 1 | 480 | 1 | 480 | 0.0 | 947 |
| MS.gene072849.t1 | MTR_3g106480 | 93.305 | 478 | 32 | 0 | 3 | 480 | 1 | 478 | 0.0 | 910 |
| MS.gene072849.t1 | MTR_3g106485 | 94.142 | 478 | 24 | 2 | 3 | 480 | 1 | 474 | 0.0 | 882 |
| MS.gene072849.t1 | MTR_1g083190 | 93.542 | 480 | 23 | 1 | 1 | 480 | 1 | 472 | 0.0 | 881 |
| MS.gene072849.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 3 | 480 | 1 | 473 | 0.0 | 838 |
| MS.gene072849.t1 | MTR_1g073400 | 90.795 | 478 | 40 | 1 | 3 | 480 | 1 | 474 | 0.0 | 838 |
| MS.gene072849.t1 | MTR_3g106430 | 92.243 | 477 | 33 | 2 | 3 | 479 | 1 | 473 | 0.0 | 837 |
| MS.gene072849.t1 | MTR_1g071130 | 85.565 | 478 | 40 | 2 | 3 | 480 | 1 | 449 | 0.0 | 828 |
| MS.gene072849.t1 | MTR_3g106470 | 83.019 | 477 | 25 | 2 | 3 | 479 | 32 | 452 | 0.0 | 754 |
| MS.gene072849.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 3 | 466 | 1 | 425 | 0.0 | 667 |
| MS.gene072849.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 6.59e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072849.t1 | AT5G25260 | 73.784 | 473 | 112 | 2 | 3 | 475 | 1 | 461 | 0.0 | 724 |
| MS.gene072849.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 3 | 475 | 1 | 459 | 0.0 | 714 |
| MS.gene072849.t1 | AT5G64870 | 70.339 | 472 | 129 | 1 | 4 | 475 | 3 | 463 | 0.0 | 651 |
Find 122 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.2:+87597971 | MS.gene072849:CDS |
| TTTAGGTACAAGAAGCAAAT+TGG | 0.249457 | 3.2:+87599424 | MS.gene072849:intron |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.2:+87599751 | MS.gene072849:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.2:+87597972 | MS.gene072849:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.2:-87597772 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 3.2:+87598300 | MS.gene072849:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.2:+87598047 | MS.gene072849:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.2:+87599678 | MS.gene072849:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.2:+87597487 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.2:+87597681 | MS.gene072849:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.2:+87597900 | MS.gene072849:CDS |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.2:-87599875 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.2:+87598060 | MS.gene072849:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.2:-87599756 | None:intergenic |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.2:-87597624 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.2:+87597935 | MS.gene072849:CDS |
| TCATGGACAGTCTTAAATAA+AGG | 0.405157 | 3.2:-87599858 | None:intergenic |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.2:+87597522 | MS.gene072849:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.2:+87597701 | MS.gene072849:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 3.2:+87598262 | MS.gene072849:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.2:+87597777 | MS.gene072849:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.2:+87598148 | MS.gene072849:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 3.2:-87598270 | None:intergenic |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.2:-87597742 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.2:+87598061 | MS.gene072849:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 3.2:+87599771 | MS.gene072849:CDS |
| CTTTGCATATAGCTCTGCTT+CGG | 0.455229 | 3.2:-87599559 | None:intergenic |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.2:+87597593 | MS.gene072849:CDS |
| TTAGGTACAAGAAGCAAATT+GGG | 0.457872 | 3.2:+87599425 | MS.gene072849:intron |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.2:+87599890 | MS.gene072849:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.2:+87597948 | MS.gene072849:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.468427 | 3.2:+87599866 | MS.gene072849:CDS |
| CAGAGGGAACTGTGACCCTT+GGG | 0.468585 | 3.2:+87599592 | MS.gene072849:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.2:-87597592 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 3.2:+87598286 | MS.gene072849:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 3.2:+87598265 | MS.gene072849:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.2:+87599797 | MS.gene072849:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3.2:+87599658 | MS.gene072849:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.2:-87599733 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.2:-87597506 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.2:+87598145 | MS.gene072849:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.2:-87597684 | None:intergenic |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.2:+87597830 | MS.gene072849:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.2:+87599886 | MS.gene072849:CDS |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.2:+87598149 | MS.gene072849:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.2:+87599476 | MS.gene072849:CDS |
| GCAGAGGGAACTGTGACCCT+TGG | 0.512908 | 3.2:+87599591 | MS.gene072849:CDS |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.2:+87599867 | MS.gene072849:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.2:-87597672 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.2:+87598131 | MS.gene072849:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.2:-87597661 | None:intergenic |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.2:-87597728 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.2:+87599798 | MS.gene072849:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87599814 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.2:-87599900 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.2:-87597601 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.2:+87597938 | MS.gene072849:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.2:+87598009 | MS.gene072849:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.2:+87597605 | MS.gene072849:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.2:+87598226 | MS.gene072849:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 3.2:+87598277 | MS.gene072849:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 3.2:+87598301 | MS.gene072849:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.2:-87597967 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.2:+87598175 | MS.gene072849:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 3.2:+87598292 | MS.gene072849:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 3.2:+87599759 | MS.gene072849:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.2:-87597637 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.2:+87599891 | MS.gene072849:CDS |
| GTGACCCTTGGGAATGCTCA+AGG | 0.570059 | 3.2:+87599603 | MS.gene072849:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.2:+87599636 | MS.gene072849:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 3.2:+87598253 | MS.gene072849:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 3.2:+87599503 | MS.gene072849:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.2:-87597835 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87599816 | MS.gene072849:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.2:+87598065 | MS.gene072849:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.2:+87598136 | MS.gene072849:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 3.2:+87598246 | MS.gene072849:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3.2:+87599659 | MS.gene072849:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.2:+87597488 | None:intergenic |
| ACGCTCCTTGAGCATTCCCA+AGG | 0.588853 | 3.2:-87599608 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.2:-87597591 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.2:+87598205 | MS.gene072849:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.2:+87597827 | MS.gene072849:CDS |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 3.2:+87599777 | MS.gene072849:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.2:+87599482 | MS.gene072849:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.2:+87598137 | MS.gene072849:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.2:+87597789 | MS.gene072849:CDS |
| AGTTGCAAGGTGAGGTCGAG+AGG | 0.604843 | 3.2:+87598330 | MS.gene072849:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.2:+87598162 | MS.gene072849:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.2:-87597617 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 3.2:+87599776 | MS.gene072849:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.2:+87598317 | MS.gene072849:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.2:+87597989 | MS.gene072849:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.2:+87598038 | MS.gene072849:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.2:+87597790 | MS.gene072849:CDS |
| TGGACAGTCTTAAATAAAGG+TGG | 0.623648 | 3.2:-87599855 | None:intergenic |
| CGCTCCTTGAGCATTCCCAA+GGG | 0.624114 | 3.2:-87599607 | None:intergenic |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.2:+87598010 | MS.gene072849:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.2:-87597767 | None:intergenic |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 3.2:+87599775 | MS.gene072849:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 3.2:+87598241 | MS.gene072849:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.2:+87599716 | MS.gene072849:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.2:+87599449 | MS.gene072849:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.2:+87597824 | MS.gene072849:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.2:-87597966 | None:intergenic |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.2:+87598322 | MS.gene072849:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.2:+87598406 | MS.gene072849:CDS |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.2:+87598109 | MS.gene072849:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.2:+87599681 | MS.gene072849:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.2:+87599719 | MS.gene072849:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.2:-87597607 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.2:-87597530 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.2:-87599897 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.2:+87599726 | MS.gene072849:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 3.2:+87599762 | MS.gene072849:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.2:-87597705 | None:intergenic |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 3.2:+87599774 | MS.gene072849:CDS |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.2:-87597756 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.2:+87597791 | MS.gene072849:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.2:-87597683 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.2:-87597685 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 3.2:+87598256 | MS.gene072849:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTGTATAATAATTTAT+AGG | - | chr3.2:87599074-87599093 | None:intergenic | 10.0% |
| !! | TATTATAATGAGATCATAAT+TGG | + | chr3.2:87598921-87598940 | MS.gene072849:intron | 15.0% |
| !!! | AATATATATTAATTTGTTGC+TGG | - | chr3.2:87598494-87598513 | None:intergenic | 15.0% |
| !!! | ATCTGATTAAATTTTTATGA+TGG | + | chr3.2:87599149-87599168 | MS.gene072849:intron | 15.0% |
| !!! | ATTTTTGGTGATTAAAATTT+TGG | + | chr3.2:87599397-87599416 | MS.gene072849:intron | 15.0% |
| !! | ATATAGGAGATTATTCAATA+TGG | + | chr3.2:87598514-87598533 | MS.gene072849:intron | 20.0% |
| !! | CTTGTATAATAATTTATAGG+CGG | - | chr3.2:87599071-87599090 | None:intergenic | 20.0% |
| !!! | AAAAGTAGTAACTTTTACAT+TGG | + | chr3.2:87598685-87598704 | MS.gene072849:intron | 20.0% |
| !!! | AACATTTACTTTTTAGATCT+TGG | + | chr3.2:87599349-87599368 | MS.gene072849:intron | 20.0% |
| !!! | AGTCTAAATTTTTTTTTGAG+AGG | - | chr3.2:87598730-87598749 | None:intergenic | 20.0% |
| !!! | ATTAAAATTTTGGATGGTTT+AGG | + | chr3.2:87599407-87599426 | MS.gene072849:intron | 20.0% |
| !!! | ATTTTACTGGATTTCATTTT+TGG | + | chr3.2:87599382-87599401 | MS.gene072849:intron | 20.0% |
| !!! | GATTCTCTATAAAACTTTTA+TGG | - | chr3.2:87598776-87598795 | None:intergenic | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr3.2:87597775-87597794 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | + | chr3.2:87599759-87599778 | MS.gene072849:CDS | 25.0% |
| ! | ACTTACTGTAGTATGTAATT+TGG | + | chr3.2:87599197-87599216 | MS.gene072849:intron | 25.0% |
| ! | AGAATCAGAGATAATTGTAA+TGG | + | chr3.2:87598878-87598897 | MS.gene072849:intron | 25.0% |
| ! | ATGATCTCATTATAATAGTG+AGG | - | chr3.2:87598918-87598937 | None:intergenic | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | + | chr3.2:87597972-87597991 | MS.gene072849:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | + | chr3.2:87597971-87597990 | MS.gene072849:CDS | 25.0% |
| ! | TGAAAGAAGTTATATTTGCA+TGG | - | chr3.2:87598442-87598461 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr3.2:87599759-87599778 | None:intergenic | 25.0% |
| ! | TTGTAAGGTAACATTAACTA+TGG | - | chr3.2:87599035-87599054 | None:intergenic | 25.0% |
| !! | GTAACTTTTACATTGGAAAT+TGG | + | chr3.2:87598692-87598711 | MS.gene072849:intron | 25.0% |
| !! | TCATGTTAAACAAGTTGAAA+AGG | - | chr3.2:87599284-87599303 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | + | chr3.2:87598061-87598080 | MS.gene072849:CDS | 25.0% |
| !! | TTCGATTGTTTTCTAATTGA+TGG | + | chr3.2:87598999-87599018 | MS.gene072849:intron | 25.0% |
| !!! | CTAAATTTTTTTTTGAGAGG+TGG | - | chr3.2:87598727-87598746 | None:intergenic | 25.0% |
| !!! | TGGCTATTTGATAATTTTAC+TGG | + | chr3.2:87599369-87599388 | MS.gene072849:intron | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | + | chr3.2:87599401-87599420 | MS.gene072849:intron | 25.0% |
| AATAGTGAGGTTAAGTAAGT+AGG | - | chr3.2:87598905-87598924 | None:intergenic | 30.0% | |
| ACAGAATATTATTACAGCCT+TGG | + | chr3.2:87598798-87598817 | MS.gene072849:intron | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | - | chr3.2:87597970-87597989 | None:intergenic | 30.0% | |
| GATGTGAACAATGTCTATTT+GGG | + | chr3.2:87598559-87598578 | MS.gene072849:intron | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | + | chr3.2:87599569-87599588 | MS.gene072849:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | + | chr3.2:87598406-87598425 | MS.gene072849:CDS | 30.0% | |
| TATCAGTTGACAATAGTCAT+AGG | + | chr3.2:87598833-87598852 | MS.gene072849:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | + | chr3.2:87597562-87597581 | MS.gene072849:CDS | 30.0% | |
| TCATGGACAGTCTTAAATAA+AGG | - | chr3.2:87599861-87599880 | None:intergenic | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | - | chr3.2:87597533-87597552 | None:intergenic | 30.0% | |
| TGATGTGAACAATGTCTATT+TGG | + | chr3.2:87598558-87598577 | MS.gene072849:intron | 30.0% | |
| TGCAAACAGATTGAAGAATA+TGG | + | chr3.2:87599243-87599262 | MS.gene072849:intron | 30.0% | |
| TTAGGTACAAGAAGCAAATT+GGG | + | chr3.2:87599425-87599444 | MS.gene072849:intron | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr3.2:87599751-87599770 | MS.gene072849:CDS | 30.0% | |
| TTTAGGTACAAGAAGCAAAT+TGG | + | chr3.2:87599424-87599443 | MS.gene072849:intron | 30.0% | |
| ! | AAGCTATGTTCTAGTTGTAT+CGG | - | chr3.2:87598980-87598999 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.2:87599678-87599697 | MS.gene072849:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | chr3.2:87597777-87597796 | MS.gene072849:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.2:87599681-87599700 | MS.gene072849:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | + | chr3.2:87598060-87598079 | MS.gene072849:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr3.2:87597900-87597919 | MS.gene072849:CDS | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | + | chr3.2:87599659-87599678 | MS.gene072849:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr3.2:87599476-87599495 | MS.gene072849:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | - | chr3.2:87597745-87597764 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | + | chr3.2:87599762-87599781 | MS.gene072849:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr3.2:87597935-87597954 | MS.gene072849:CDS | 35.0% | |
| CAATGTCTATTTGGGTGTTT+AGG | + | chr3.2:87598567-87598586 | MS.gene072849:intron | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | - | chr3.2:87597664-87597683 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.2:87598047-87598066 | MS.gene072849:CDS | 35.0% | |
| GGTAACTATGCTTACTTGTA+AGG | - | chr3.2:87599050-87599069 | None:intergenic | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | - | chr3.2:87597770-87597789 | None:intergenic | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | + | chr3.2:87599866-87599885 | MS.gene072849:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr3.2:87597731-87597750 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | - | chr3.2:87597969-87597988 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | + | chr3.2:87597522-87597541 | MS.gene072849:CDS | 35.0% | |
| TGGACAGTCTTAAATAAAGG+TGG | - | chr3.2:87599858-87599877 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | + | chr3.2:87597790-87597809 | MS.gene072849:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | - | chr3.2:87597627-87597646 | None:intergenic | 35.0% |
| ! | ATTATTACAGCCTTGGTGAT+TGG | + | chr3.2:87598805-87598824 | MS.gene072849:intron | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | + | chr3.2:87598065-87598084 | MS.gene072849:CDS | 35.0% |
| ! | TATGTTCTAGTTGTATCGGT+GGG | - | chr3.2:87598976-87598995 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | + | chr3.2:87597573-87597592 | MS.gene072849:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr3.2:87598196-87598215 | MS.gene072849:CDS | 35.0% |
| AAGACTGTCCATGAACAAAC+GGG | + | chr3.2:87599867-87599886 | MS.gene072849:CDS | 40.0% | |
| AATGCTCAAAGAATGCCCTA+AGG | - | chr3.2:87598664-87598683 | None:intergenic | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | - | chr3.2:87597640-87597659 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | + | chr3.2:87598162-87598181 | MS.gene072849:CDS | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87599817-87599836 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.2:87599636-87599655 | MS.gene072849:CDS | 40.0% | |
| ATGCTCAAAGAATGCCCTAA+GGG | - | chr3.2:87598663-87598682 | None:intergenic | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87599816-87599835 | MS.gene072849:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | + | chr3.2:87597789-87597808 | MS.gene072849:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr3.2:87598109-87598128 | MS.gene072849:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | + | chr3.2:87599658-87599677 | MS.gene072849:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.2:87599716-87599735 | MS.gene072849:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr3.2:87599576-87599595 | MS.gene072849:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | + | chr3.2:87599449-87599468 | MS.gene072849:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | + | chr3.2:87598010-87598029 | MS.gene072849:CDS | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | - | chr3.2:87599878-87599897 | None:intergenic | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | + | chr3.2:87598038-87598057 | MS.gene072849:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | + | chr3.2:87598175-87598194 | MS.gene072849:CDS | 40.0% | |
| TGATACTGTACCAATCACCA+AGG | - | chr3.2:87598818-87598837 | None:intergenic | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | + | chr3.2:87599575-87599594 | MS.gene072849:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr3.2:87597938-87597957 | MS.gene072849:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | + | chr3.2:87598009-87598028 | MS.gene072849:CDS | 40.0% | |
| TGGCGACAAAACAATTCAAG+TGG | - | chr3.2:87598756-87598775 | None:intergenic | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | + | chr3.2:87597791-87597810 | MS.gene072849:CDS | 40.0% | |
| ! | ATGTTCTAGTTGTATCGGTG+GGG | - | chr3.2:87598975-87598994 | None:intergenic | 40.0% |
| ! | CTATGTTCTAGTTGTATCGG+TGG | - | chr3.2:87598977-87598996 | None:intergenic | 40.0% |
| ! | CTTTGCATATAGCTCTGCTT+CGG | - | chr3.2:87599562-87599581 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | + | chr3.2:87598241-87598260 | MS.gene072849:CDS | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | - | chr3.2:87598426-87598445 | None:intergenic | 40.0% |
| AATGTTACCACCTGCTTGGA+TGG | + | chr3.2:87599890-87599909 | MS.gene072849:CDS | 45.0% | |
| ACCAACATAGTCACGCTCAA+TGG | + | chr3.2:87598624-87598643 | MS.gene072849:intron | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr3.2:87597688-87597707 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | - | chr3.2:87597620-87597639 | None:intergenic | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | + | chr3.2:87599891-87599910 | MS.gene072849:CDS | 45.0% | |
| CCAACATAGTCACGCTCAAT+GGG | + | chr3.2:87598625-87598644 | MS.gene072849:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr3.2:87598205-87598224 | MS.gene072849:CDS | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | + | chr3.2:87598226-87598245 | MS.gene072849:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87599482-87599501 | MS.gene072849:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr3.2:87599719-87599738 | MS.gene072849:CDS | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | + | chr3.2:87599771-87599790 | MS.gene072849:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | + | chr3.2:87597989-87598008 | MS.gene072849:CDS | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr3.2:87599789-87599808 | MS.gene072849:CDS | 45.0% |
| ! | TGTTCTAGTTGTATCGGTGG+GGG | - | chr3.2:87598974-87598993 | None:intergenic | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | + | chr3.2:87599774-87599793 | MS.gene072849:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | + | chr3.2:87599775-87599794 | MS.gene072849:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | + | chr3.2:87599798-87599817 | MS.gene072849:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | + | chr3.2:87599776-87599795 | MS.gene072849:CDS | 45.0% |
| !! | CAAATTAATATATATTATAT+AGG | + | chr3.2:87598498-87598517 | MS.gene072849:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | - | chr3.2:87597675-87597694 | None:intergenic | 50.0% | |
| ACATAGTCACGCTCAATGGG+TGG | + | chr3.2:87598628-87598647 | MS.gene072849:intron | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | - | chr3.2:87597509-87597528 | None:intergenic | 50.0% | |
| CCCATTGAGCGTGACTATGT+TGG | - | chr3.2:87598628-87598647 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | + | chr3.2:87598317-87598336 | MS.gene072849:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr3.2:87597708-87597727 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | - | chr3.2:87597838-87597857 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | - | chr3.2:87597686-87597705 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr3.2:87597687-87597706 | None:intergenic | 50.0% | |
| GGTGGTAACAAGTGCCCTTA+GGG | + | chr3.2:87598646-87598665 | MS.gene072849:intron | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | + | chr3.2:87598131-87598150 | MS.gene072849:CDS | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | - | chr3.2:87597759-87597778 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | + | chr3.2:87598246-87598265 | MS.gene072849:CDS | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | + | chr3.2:87597840-87597859 | MS.gene072849:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | + | chr3.2:87599777-87599796 | MS.gene072849:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | chr3.2:87598301-87598320 | MS.gene072849:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | + | chr3.2:87599797-87599816 | MS.gene072849:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | - | chr3.2:87597594-87597613 | None:intergenic | 55.0% | |
| AAGACTCCCATCCAAGCAGG+TGG | - | chr3.2:87599900-87599919 | None:intergenic | 55.0% | |
| ACGCTCCTTGAGCATTCCCA+AGG | - | chr3.2:87599611-87599630 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | + | chr3.2:87597824-87597843 | MS.gene072849:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | chr3.2:87598292-87598311 | MS.gene072849:CDS | 55.0% | |
| AGTTGCAAGGTGAGGTCGAG+AGG | + | chr3.2:87598330-87598349 | MS.gene072849:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr3.2:87599726-87599745 | MS.gene072849:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | - | chr3.2:87597595-87597614 | None:intergenic | 55.0% | |
| CAGAGGGAACTGTGACCCTT+GGG | + | chr3.2:87599592-87599611 | MS.gene072849:CDS | 55.0% | |
| CGCTCCTTGAGCATTCCCAA+GGG | - | chr3.2:87599610-87599629 | None:intergenic | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | + | chr3.2:87599886-87599905 | MS.gene072849:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | + | chr3.2:87597681-87597700 | MS.gene072849:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | + | chr3.2:87598322-87598341 | MS.gene072849:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | chr3.2:87598286-87598305 | MS.gene072849:CDS | 55.0% | |
| GGGTGGTAACAAGTGCCCTT+AGG | + | chr3.2:87598645-87598664 | MS.gene072849:intron | 55.0% | |
| GTGACCCTTGGGAATGCTCA+AGG | + | chr3.2:87599603-87599622 | MS.gene072849:CDS | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | - | chr3.2:87597610-87597629 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | + | chr3.2:87597830-87597849 | MS.gene072849:CDS | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | + | chr3.2:87597948-87597967 | MS.gene072849:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | chr3.2:87598300-87598319 | MS.gene072849:CDS | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | + | chr3.2:87598253-87598272 | MS.gene072849:CDS | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | + | chr3.2:87599503-87599522 | MS.gene072849:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr3.2:87597701-87597720 | MS.gene072849:CDS | 55.0% |
| !! | CGGTGGGGGTTCTGACTTTT+GGG | - | chr3.2:87598960-87598979 | None:intergenic | 55.0% |
| !! | TCGGTGGGGGTTCTGACTTT+TGG | - | chr3.2:87598961-87598980 | None:intergenic | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | + | chr3.2:87598148-87598167 | MS.gene072849:CDS | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | + | chr3.2:87597605-87597624 | MS.gene072849:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | + | chr3.2:87597827-87597846 | MS.gene072849:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | + | chr3.2:87597593-87597612 | MS.gene072849:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | + | chr3.2:87598145-87598164 | MS.gene072849:CDS | 60.0% | |
| GCAGAGGGAACTGTGACCCT+TGG | + | chr3.2:87599591-87599610 | MS.gene072849:CDS | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | + | chr3.2:87598137-87598156 | MS.gene072849:CDS | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | + | chr3.2:87598149-87598168 | MS.gene072849:CDS | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | - | chr3.2:87599903-87599922 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | chr3.2:87598277-87598296 | MS.gene072849:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | - | chr3.2:87597604-87597623 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | + | chr3.2:87598136-87598155 | MS.gene072849:CDS | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | + | chr3.2:87598256-87598275 | MS.gene072849:CDS | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | - | chr3.2:87599736-87599755 | None:intergenic | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | - | chr3.2:87598273-87598292 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | chr3.2:87598265-87598284 | MS.gene072849:CDS | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | + | chr3.2:87598262-87598281 | MS.gene072849:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87597495 | 87599938 | 87597495 | ID=MS.gene072849 |
| chr3.2 | mRNA | 87597495 | 87599938 | 87597495 | ID=MS.gene072849.t1;Parent=MS.gene072849 |
| chr3.2 | exon | 87597495 | 87598427 | 87597495 | ID=MS.gene072849.t1.exon1;Parent=MS.gene072849.t1 |
| chr3.2 | CDS | 87597495 | 87598427 | 87597495 | ID=cds.MS.gene072849.t1;Parent=MS.gene072849.t1 |
| chr3.2 | exon | 87599429 | 87599938 | 87599429 | ID=MS.gene072849.t1.exon2;Parent=MS.gene072849.t1 |
| chr3.2 | CDS | 87599429 | 87599938 | 87599429 | ID=cds.MS.gene072849.t1;Parent=MS.gene072849.t1 |
| Gene Sequence |
| Protein sequence |
