Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072855.t1 | XP_003603332.1 | 92.1 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 4.80E-174 | 620.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072855.t1 | D2XNQ9 | 92.1 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 1.2e-176 | 620.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072855.t1 | G7JAE4 | 92.1 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 3.5e-174 | 620.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072855.t1 | MTR_3g106485 | 96.653 | 478 | 12 | 2 | 1 | 478 | 1 | 474 | 0.0 | 934 |
| MS.gene072855.t1 | MTR_3g106480 | 94.770 | 478 | 25 | 0 | 1 | 478 | 1 | 478 | 0.0 | 929 |
| MS.gene072855.t1 | MTR_3g106420 | 94.142 | 478 | 28 | 0 | 1 | 478 | 3 | 480 | 0.0 | 897 |
| MS.gene072855.t1 | MTR_1g115145 | 89.562 | 479 | 43 | 3 | 1 | 478 | 1 | 473 | 0.0 | 853 |
| MS.gene072855.t1 | MTR_1g073400 | 91.423 | 478 | 37 | 1 | 1 | 478 | 1 | 474 | 0.0 | 851 |
| MS.gene072855.t1 | MTR_1g083190 | 90.586 | 478 | 37 | 1 | 1 | 478 | 3 | 472 | 0.0 | 849 |
| MS.gene072855.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 839 |
| MS.gene072855.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 836 |
| MS.gene072855.t1 | MTR_3g106470 | 81.132 | 477 | 34 | 2 | 1 | 477 | 32 | 452 | 0.0 | 736 |
| MS.gene072855.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 1 | 464 | 1 | 425 | 0.0 | 672 |
| MS.gene072855.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 5.18e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072855.t1 | AT5G25260 | 73.573 | 473 | 113 | 2 | 1 | 473 | 1 | 461 | 0.0 | 726 |
| MS.gene072855.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 719 |
| MS.gene072855.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 660 |
Find 117 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 3.2:+87554239 | MS.gene072855:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.2:+87554568 | MS.gene072855:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 3.2:+87556043 | MS.gene072855:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.2:+87554315 | MS.gene072855:CDS |
| TTAGTCCAAATGTTAATCTT+AGG | 0.325712 | 3.2:-87556121 | None:intergenic |
| TGTAGGTGCAAGAGGCTAAC+TGG | 0.327485 | 3.2:+87555789 | MS.gene072855:intron |
| CTCCCTGCCGTCTTCACAAT+TGG | 0.332748 | 3.2:+87553949 | MS.gene072855:CDS |
| CAATGCTAATGTTAAGCAAT+TGG | 0.346020 | 3.2:+87554203 | MS.gene072855:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.349522 | 3.2:-87554040 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.2:+87556255 | MS.gene072855:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.2:+87554168 | MS.gene072855:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.2:+87554328 | MS.gene072855:CDS |
| AAGATTAACATTTGGACTAA+TGG | 0.359631 | 3.2:+87556124 | MS.gene072855:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.2:+87554521 | MS.gene072855:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.373519 | 3.2:+87553790 | MS.gene072855:CDS |
| CGTATTTGAGGAGACTTTCA+TGG | 0.399951 | 3.2:-87553987 | None:intergenic |
| TTGAGCCTAAGATTAACATT+TGG | 0.412978 | 3.2:+87556116 | MS.gene072855:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.2:+87554530 | MS.gene072855:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 3.2:+87554416 | MS.gene072855:CDS |
| ATCATGAGGTGAAATAAGTT+TGG | 0.429079 | 3.2:-87554010 | None:intergenic |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.2:+87556139 | MS.gene072855:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.2:+87554045 | MS.gene072855:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.2:+87555841 | MS.gene072855:CDS |
| AAATAAGTTTGGCGTATTTG+AGG | 0.468280 | 3.2:-87553999 | None:intergenic |
| TAAGAATCAGAGAGAGGCTG+AGG | 0.468965 | 3.2:+87554470 | MS.gene072855:CDS |
| TGCTTCCATGACCATGGAGG+AGG | 0.479699 | 3.2:+87554098 | MS.gene072855:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.2:+87554329 | MS.gene072855:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 3.2:+87554240 | MS.gene072855:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.2:+87556162 | MS.gene072855:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 3.2:+87553755 | None:intergenic |
| CTTTGCGTATAGCTCTGCTT+CGG | 0.490908 | 3.2:-87555924 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.2:+87556232 | MS.gene072855:CDS |
| GGACCAATTGTGAAGACGGC+AGG | 0.502590 | 3.2:-87553952 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 3.2:+87556251 | MS.gene072855:CDS |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 3.2:-87554103 | None:intergenic |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 3.2:+87556023 | MS.gene072855:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.2:+87554533 | MS.gene072855:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.512238 | 3.2:+87554554 | MS.gene072855:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.2:+87556256 | MS.gene072855:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.2:-87556240 | None:intergenic |
| GAAGACCGTGCATGATTGAC+CGG | 0.521386 | 3.2:-87553860 | None:intergenic |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.2:+87554514 | MS.gene072855:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.2:+87554216 | MS.gene072855:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.2:+87554569 | MS.gene072855:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.2:+87554506 | MS.gene072855:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.2:+87556163 | MS.gene072855:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87556179 | None:intergenic |
| CTCAAGTCCACGTACCGCCT+CGG | 0.541020 | 3.2:-87556098 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 3.2:+87554585 | MS.gene072855:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.2:+87554494 | MS.gene072855:CDS |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.2:+87555956 | MS.gene072855:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 3.2:+87554399 | MS.gene072855:CDS |
| GAGAACGAAAGGGAGTTTCT+CGG | 0.549947 | 3.2:-87553929 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.2:-87556265 | None:intergenic |
| AGTCGAGGCGAAGAAGGCCG+TGG | 0.552149 | 3.2:+87554560 | MS.gene072855:CDS |
| GTAGGTGCAAGAGGCTAACT+GGG | 0.558157 | 3.2:+87555790 | MS.gene072855:intron |
| TATCTTGCGATAACTGGTGC+CGG | 0.558862 | 3.2:+87553796 | MS.gene072855:CDS |
| TGCTAATGTTAAGCAATTGG+TGG | 0.560962 | 3.2:+87554206 | MS.gene072855:CDS |
| CACGGTCTTCGACCTCTCAC+CGG | 0.561698 | 3.2:+87553873 | MS.gene072855:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 3.2:+87554545 | MS.gene072855:CDS |
| CTGGATGTTGTAGGTGCAAG+AGG | 0.562730 | 3.2:+87555781 | MS.gene072855:intron |
| GAATCAGAGAGAGGCTGAGG+TGG | 0.566145 | 3.2:+87554473 | MS.gene072855:CDS |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 3.2:+87554057 | MS.gene072855:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.2:-87553940 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.2:+87556001 | MS.gene072855:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 3.2:-87553892 | None:intergenic |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 3.2:-87554109 | None:intergenic |
| CCTCGCTGCTTCCATGACCA+TGG | 0.573283 | 3.2:+87554092 | MS.gene072855:CDS |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 3.2:-87553885 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+TGG | 0.575987 | 3.2:+87556091 | MS.gene072855:CDS |
| ATTAACATTTGGACTAATGG+TGG | 0.579465 | 3.2:+87556127 | MS.gene072855:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87556181 | MS.gene072855:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.2:+87555968 | MS.gene072855:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 3.2:+87553830 | MS.gene072855:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.2:+87554394 | MS.gene072855:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.2:+87556140 | MS.gene072855:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 3.2:-87553956 | None:intergenic |
| AAGACCGTGCATGATTGACC+GGG | 0.595662 | 3.2:-87553859 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.2:+87555957 | MS.gene072855:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 3.2:+87556024 | MS.gene072855:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.2:+87555847 | MS.gene072855:CDS |
| GACCAATTGTGAAGACGGCA+GGG | 0.602478 | 3.2:-87553951 | None:intergenic |
| GCTCATAGCTTGAACTTCGA+AGG | 0.602578 | 3.2:-87553905 | None:intergenic |
| TTTCCCCGGTCAATCATGCA+CGG | 0.608303 | 3.2:+87553855 | MS.gene072855:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.2:+87554598 | MS.gene072855:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.2:+87554306 | MS.gene072855:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.2:-87556223 | None:intergenic |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.2:+87554257 | MS.gene072855:CDS |
| CGCTGCTTCCATGACCATGG+AGG | 0.624081 | 3.2:+87554095 | MS.gene072855:CDS |
| GGAAGCAGCGAATCAAGCTA+AGG | 0.627544 | 3.2:+87554278 | MS.gene072855:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 3.2:+87554058 | MS.gene072855:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.2:+87556142 | MS.gene072855:CDS |
| GATAACTGGTGCCGGAATCG+AGG | 0.630242 | 3.2:+87553804 | MS.gene072855:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.2:+87554333 | MS.gene072855:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.2:-87553939 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.2:+87554395 | MS.gene072855:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.634084 | 3.2:-87554577 | None:intergenic |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.2:+87556141 | MS.gene072855:CDS |
| GTTCATTAACGTGATTGGAG+TGG | 0.637668 | 3.2:-87554035 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 3.2:+87553756 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.2:+87556081 | MS.gene072855:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 3.2:+87554430 | MS.gene072855:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 3.2:+87554674 | MS.gene072855:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.2:-87556220 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.2:+87554377 | MS.gene072855:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.2:+87554509 | MS.gene072855:CDS |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 3.2:-87554234 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.2:+87556046 | MS.gene072855:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.2:+87556084 | MS.gene072855:CDS |
| CTTTCATGGTCGTCAACACG+AGG | 0.664330 | 3.2:-87553973 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.2:-87556262 | None:intergenic |
| TGATTGGAGTGGCGATCATG+AGG | 0.675682 | 3.2:-87554024 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 3.2:+87554417 | MS.gene072855:CDS |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 3.2:+87554059 | MS.gene072855:CDS |
| AGACCGTGCATGATTGACCG+GGG | 0.723407 | 3.2:-87553858 | None:intergenic |
| CCATGGTCATGGAAGCAGCG+AGG | 0.728643 | 3.2:-87554092 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.2:+87554524 | MS.gene072855:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTAAGATTATAACAT+GGG | - | chr3.2:87555015-87555034 | None:intergenic | 10.0% |
| !! | CATTATAAAACTAAATCATT+TGG | + | chr3.2:87555505-87555524 | MS.gene072855:intron | 15.0% |
| !!! | ATATTTTAAAGGCTAAATAA+AGG | + | chr3.2:87554963-87554982 | MS.gene072855:intron | 15.0% |
| !!! | GTATATTTAAGATTATAACA+TGG | - | chr3.2:87555016-87555035 | None:intergenic | 15.0% |
| !! | ATATGTACAGTTTATTTACA+AGG | - | chr3.2:87555386-87555405 | None:intergenic | 20.0% |
| !! | ATATTTACAAAGATCATAGA+TGG | + | chr3.2:87555190-87555209 | MS.gene072855:intron | 20.0% |
| !! | ATTAGAAAAAGTTTGACATA+CGG | + | chr3.2:87555627-87555646 | MS.gene072855:intron | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | + | chr3.2:87555814-87555833 | MS.gene072855:CDS | 20.0% |
| !! | ATTCAACTGATTATGTTATA+TGG | + | chr3.2:87555039-87555058 | MS.gene072855:intron | 20.0% |
| !! | CATACATTGATATAAAAAGA+TGG | + | chr3.2:87555409-87555428 | MS.gene072855:intron | 20.0% |
| !! | GACAAATTAAACATTATACA+AGG | + | chr3.2:87555315-87555334 | MS.gene072855:intron | 20.0% |
| !! | TATTTACAAAGATCATAGAT+GGG | + | chr3.2:87555191-87555210 | MS.gene072855:intron | 20.0% |
| !! | TCTCATTATAGTTTAGTAAA+AGG | - | chr3.2:87555244-87555263 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTTTAAGTGC+TGG | + | chr3.2:87555750-87555769 | MS.gene072855:intron | 20.0% |
| !!! | ATAATGTTTAATTTGTCGAT+TGG | - | chr3.2:87555312-87555331 | None:intergenic | 20.0% |
| !!! | TAATGTTTAATTTGTCGATT+GGG | - | chr3.2:87555311-87555330 | None:intergenic | 20.0% |
| ! | AAGAATAAGTTATAGTTGCA+TGG | - | chr3.2:87554705-87554724 | None:intergenic | 25.0% |
| ! | AAGATTAACATTTGGACTAA+TGG | + | chr3.2:87556124-87556143 | MS.gene072855:CDS | 25.0% |
| ! | ATAACAAGTATGTTGTATAC+GGG | + | chr3.2:87555714-87555733 | MS.gene072855:intron | 25.0% |
| ! | CATAACAAGTATGTTGTATA+CGG | + | chr3.2:87555713-87555732 | MS.gene072855:intron | 25.0% |
| ! | TAATATCTATTGAGACGTTT+AGG | + | chr3.2:87554833-87554852 | MS.gene072855:intron | 25.0% |
| ! | TATTTACAAGGTCTTAACTA+CGG | - | chr3.2:87555374-87555393 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATGTTAATCTT+AGG | - | chr3.2:87556124-87556143 | None:intergenic | 25.0% |
| ! | TTCTAATCGAAACAAAACAT+AGG | - | chr3.2:87555614-87555633 | None:intergenic | 25.0% |
| ! | TTTCAATGTATGTTGTATAC+TGG | + | chr3.2:87555663-87555682 | MS.gene072855:intron | 25.0% |
| !! | GAGTTGGTTAAATTTGAAAA+GGG | - | chr3.2:87554871-87554890 | None:intergenic | 25.0% |
| !! | GTAAAAGTACACAACTAATT+TGG | - | chr3.2:87555568-87555587 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | + | chr3.2:87555125-87555144 | MS.gene072855:intron | 25.0% |
| !! | TTGATTGTTTGTTTCTCAAA+AGG | + | chr3.2:87555277-87555296 | MS.gene072855:intron | 25.0% |
| !!! | AATGTTTAATTTGTCGATTG+GGG | - | chr3.2:87555310-87555329 | None:intergenic | 25.0% |
| !!! | CACTGTAATTACAGTTTTTT+TGG | + | chr3.2:87554793-87554812 | MS.gene072855:intron | 25.0% |
| !!! | TGAGTTGGTTAAATTTGAAA+AGG | - | chr3.2:87554872-87554891 | None:intergenic | 25.0% |
| AAATAAGTTTGGCGTATTTG+AGG | - | chr3.2:87554002-87554021 | None:intergenic | 30.0% | |
| AGCGATAGAAGATTAATTCA+GGG | + | chr3.2:87554930-87554949 | MS.gene072855:intron | 30.0% | |
| AGTTTAGTAAAAGGCAAAGT+AGG | - | chr3.2:87555235-87555254 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | - | chr3.2:87554013-87554032 | None:intergenic | 30.0% | |
| ATTAACATTTGGACTAATGG+TGG | + | chr3.2:87556127-87556146 | MS.gene072855:CDS | 30.0% | |
| CAATGCTAATGTTAAGCAAT+TGG | + | chr3.2:87554203-87554222 | MS.gene072855:CDS | 30.0% | |
| GTTCAATATACAATAGTCCT+AGG | + | chr3.2:87555155-87555174 | MS.gene072855:intron | 30.0% | |
| GTTTAGTAAAAGGCAAAGTA+GGG | - | chr3.2:87555234-87555253 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | + | chr3.2:87553830-87553849 | MS.gene072855:CDS | 30.0% | |
| TATATTGAACCAAATCACCA+AGG | - | chr3.2:87555145-87555164 | None:intergenic | 30.0% | |
| TATCTGACTAACTTTCATCA+TGG | + | chr3.2:87555438-87555457 | MS.gene072855:intron | 30.0% | |
| TTGAGCCTAAGATTAACATT+TGG | + | chr3.2:87556116-87556135 | MS.gene072855:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.2:87556043-87556062 | MS.gene072855:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.2:87556046-87556065 | MS.gene072855:CDS | 30.0% |
| !! | AGTTTTTAAGAATCAGAGAG+AGG | + | chr3.2:87554464-87554483 | MS.gene072855:CDS | 30.0% |
| !! | ATGTTTAATTTGTCGATTGG+GGG | - | chr3.2:87555309-87555328 | None:intergenic | 30.0% |
| !! | ATTTTACAACCTTGGTGATT+TGG | + | chr3.2:87555133-87555152 | MS.gene072855:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr3.2:87554168-87554187 | MS.gene072855:CDS | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | chr3.2:87554329-87554348 | MS.gene072855:CDS | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | + | chr3.2:87556024-87556043 | MS.gene072855:CDS | 35.0% | |
| AACGAGTTCATTAACGTGAT+TGG | - | chr3.2:87554043-87554062 | None:intergenic | 35.0% | |
| AACTATAATGAGATCGCAGT+TGG | + | chr3.2:87555251-87555270 | MS.gene072855:intron | 35.0% | |
| AAGTAGCAAGATGCTAATTG+GGG | + | chr3.2:87555340-87555359 | MS.gene072855:intron | 35.0% | |
| ACTATAATGAGATCGCAGTT+GGG | + | chr3.2:87555252-87555271 | MS.gene072855:intron | 35.0% | |
| AGAAGTAGCAAGATGCTAAT+TGG | + | chr3.2:87555338-87555357 | MS.gene072855:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr3.2:87555841-87555860 | MS.gene072855:CDS | 35.0% | |
| ATCTATTGAGACGTTTAGGT+TGG | + | chr3.2:87554837-87554856 | MS.gene072855:intron | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | + | chr3.2:87554240-87554259 | MS.gene072855:CDS | 35.0% | |
| GAAAAAGTTTGACATACGGT+AGG | + | chr3.2:87555631-87555650 | MS.gene072855:intron | 35.0% | |
| GAAGTAGCAAGATGCTAATT+GGG | + | chr3.2:87555339-87555358 | MS.gene072855:intron | 35.0% | |
| GAGCGATAGAAGATTAATTC+AGG | + | chr3.2:87554929-87554948 | MS.gene072855:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.2:87554315-87554334 | MS.gene072855:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr3.2:87555934-87555953 | MS.gene072855:CDS | 35.0% | |
| GTTGAAATTCTGGATGTTGT+AGG | + | chr3.2:87555772-87555791 | MS.gene072855:intron | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | + | chr3.2:87554674-87554693 | MS.gene072855:CDS | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | + | chr3.2:87554239-87554258 | MS.gene072855:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | + | chr3.2:87553790-87553809 | MS.gene072855:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | - | chr3.2:87556226-87556245 | None:intergenic | 35.0% | |
| TGCTAATGTTAAGCAATTGG+TGG | + | chr3.2:87554206-87554225 | MS.gene072855:CDS | 35.0% | |
| TTTGACATACGGTAGGTAAA+TGG | + | chr3.2:87555638-87555657 | MS.gene072855:intron | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | + | chr3.2:87556139-87556158 | MS.gene072855:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | + | chr3.2:87556140-87556159 | MS.gene072855:CDS | 35.0% |
| ! | GAAGTATTACTCTTGTTGCT+TGG | - | chr3.2:87554765-87554784 | None:intergenic | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | + | chr3.2:87556141-87556160 | MS.gene072855:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | - | chr3.2:87556284-87556303 | None:intergenic | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr3.2:87554328-87554347 | MS.gene072855:CDS | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | + | chr3.2:87555762-87555781 | MS.gene072855:intron | 35.0% |
| AATGACTCATGTCACTGAGT+TGG | - | chr3.2:87554887-87554906 | None:intergenic | 40.0% | |
| AGAAGCAGGGAATTAAAGTG+AGG | + | chr3.2:87554430-87554449 | MS.gene072855:CDS | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87556182-87556201 | None:intergenic | 40.0% | |
| AGGTCTTAACTACGGATTTG+CGG | - | chr3.2:87555366-87555385 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.2:87556001-87556020 | MS.gene072855:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | + | chr3.2:87554598-87554617 | MS.gene072855:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87556181-87556200 | MS.gene072855:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr3.2:87555942-87555961 | MS.gene072855:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | + | chr3.2:87554045-87554064 | MS.gene072855:CDS | 40.0% | |
| CGTATTTGAGGAGACTTTCA+TGG | - | chr3.2:87553990-87554009 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr3.2:87554377-87554396 | MS.gene072855:CDS | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | + | chr3.2:87556023-87556042 | MS.gene072855:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.2:87556081-87556100 | MS.gene072855:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr3.2:87555941-87555960 | MS.gene072855:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | + | chr3.2:87554306-87554325 | MS.gene072855:CDS | 40.0% | |
| GTTCATTAACGTGATTGGAG+TGG | - | chr3.2:87554038-87554057 | None:intergenic | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | - | chr3.2:87554237-87554256 | None:intergenic | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | + | chr3.2:87554058-87554077 | MS.gene072855:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | - | chr3.2:87556223-87556242 | None:intergenic | 40.0% | |
| ! | AATAGTGGGGGAATAACTGA+AGG | + | chr3.2:87556154-87556173 | MS.gene072855:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | + | chr3.2:87556142-87556161 | MS.gene072855:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr3.2:87553895-87553914 | None:intergenic | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | - | chr3.2:87554694-87554713 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | chr3.2:87553777-87553796 | None:intergenic | 40.0% |
| ! | CATCAATTTTCGCTGCATTC+TGG | - | chr3.2:87554368-87554387 | None:intergenic | 40.0% |
| ! | GTTTGTTTCTCAAAAGGCAG+AGG | + | chr3.2:87555283-87555302 | MS.gene072855:intron | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | + | chr3.2:87554506-87554525 | MS.gene072855:CDS | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+CGG | + | chr3.2:87553841-87553860 | MS.gene072855:CDS | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | chr3.2:87554333-87554352 | MS.gene072855:CDS | 40.0% |
| !! | GAGTTTTATGTCCTCGATTC+CGG | - | chr3.2:87553818-87553837 | None:intergenic | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr3.2:87556232-87556251 | MS.gene072855:CDS | 45.0% | |
| AATATGCAGTGCACAGACCT+AGG | - | chr3.2:87555175-87555194 | None:intergenic | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | - | chr3.2:87553959-87553978 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | chr3.2:87555940-87555959 | MS.gene072855:CDS | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | + | chr3.2:87554059-87554078 | MS.gene072855:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | + | chr3.2:87554585-87554604 | MS.gene072855:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | + | chr3.2:87554057-87554076 | MS.gene072855:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | + | chr3.2:87554395-87554414 | MS.gene072855:CDS | 45.0% | |
| GAGAACGAAAGGGAGTTTCT+CGG | - | chr3.2:87553932-87553951 | None:intergenic | 45.0% | |
| GCTCATAGCTTGAACTTCGA+AGG | - | chr3.2:87553908-87553927 | None:intergenic | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | + | chr3.2:87554494-87554513 | MS.gene072855:CDS | 45.0% | |
| TAAGAATCAGAGAGAGGCTG+AGG | + | chr3.2:87554470-87554489 | MS.gene072855:CDS | 45.0% | |
| TATCTTGCGATAACTGGTGC+CGG | + | chr3.2:87553796-87553815 | MS.gene072855:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87555847-87555866 | MS.gene072855:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr3.2:87556084-87556103 | MS.gene072855:CDS | 45.0% | |
| ! | CTTTGCGTATAGCTCTGCTT+CGG | - | chr3.2:87555927-87555946 | None:intergenic | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | + | chr3.2:87554509-87554528 | MS.gene072855:CDS | 45.0% |
| !! | AGACGTTTAGGTTGGACTCT+TGG | + | chr3.2:87554845-87554864 | MS.gene072855:intron | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | + | chr3.2:87556163-87556182 | MS.gene072855:CDS | 45.0% |
| !!! | AAATTTTTAAAAAAATTTAG+CGG | - | chr3.2:87555107-87555126 | None:intergenic | 5.0% |
| !!! | GATATTTTTTAATATTTTAA+AGG | + | chr3.2:87554952-87554971 | MS.gene072855:intron | 5.0% |
| AAGACCGTGCATGATTGACC+GGG | - | chr3.2:87553862-87553881 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr3.2:87553888-87553907 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr3.2:87556256-87556275 | MS.gene072855:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | + | chr3.2:87555957-87555976 | MS.gene072855:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | + | chr3.2:87554394-87554413 | MS.gene072855:CDS | 50.0% | |
| CTGGATGTTGTAGGTGCAAG+AGG | + | chr3.2:87555781-87555800 | MS.gene072855:intron | 50.0% | |
| CTTTCATGGTCGTCAACACG+AGG | - | chr3.2:87553976-87553995 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | - | chr3.2:87554106-87554125 | None:intergenic | 50.0% | |
| GAAGACCGTGCATGATTGAC+CGG | - | chr3.2:87553863-87553882 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACGGCA+GGG | - | chr3.2:87553954-87553973 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr3.2:87556243-87556262 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | + | chr3.2:87554417-87554436 | MS.gene072855:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+AGG | + | chr3.2:87554278-87554297 | MS.gene072855:CDS | 50.0% | |
| GTAGGTGCAAGAGGCTAACT+GGG | + | chr3.2:87555790-87555809 | MS.gene072855:intron | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr3.2:87555968-87555987 | MS.gene072855:CDS | 50.0% | |
| TGATTGGAGTGGCGATCATG+AGG | - | chr3.2:87554027-87554046 | None:intergenic | 50.0% | |
| TGTAGGTGCAAGAGGCTAAC+TGG | + | chr3.2:87555789-87555808 | MS.gene072855:intron | 50.0% | |
| TTTCCCCGGTCAATCATGCA+CGG | + | chr3.2:87553855-87553874 | MS.gene072855:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr3.2:87554216-87554235 | MS.gene072855:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | + | chr3.2:87554108-87554127 | MS.gene072855:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | + | chr3.2:87555868-87555887 | MS.gene072855:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | - | chr3.2:87554112-87554131 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | + | chr3.2:87554257-87554276 | MS.gene072855:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | + | chr3.2:87556162-87556181 | MS.gene072855:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | - | chr3.2:87553943-87553962 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | chr3.2:87556265-87556284 | None:intergenic | 55.0% | |
| AGACCGTGCATGATTGACCG+GGG | - | chr3.2:87553861-87553880 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | chr3.2:87553942-87553961 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+TGG | + | chr3.2:87556091-87556110 | MS.gene072855:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr3.2:87556255-87556274 | MS.gene072855:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | - | chr3.2:87554580-87554599 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+TGG | + | chr3.2:87553949-87553968 | MS.gene072855:CDS | 55.0% | |
| GAATCAGAGAGAGGCTGAGG+TGG | + | chr3.2:87554473-87554492 | MS.gene072855:CDS | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | + | chr3.2:87555956-87555975 | MS.gene072855:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | - | chr3.2:87553955-87553974 | None:intergenic | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | + | chr3.2:87554416-87554435 | MS.gene072855:CDS | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | - | chr3.2:87556268-87556287 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr3.2:87554399-87554418 | MS.gene072855:CDS | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | + | chr3.2:87554098-87554117 | MS.gene072855:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | + | chr3.2:87554514-87554533 | MS.gene072855:CDS | 55.0% | |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | + | chr3.2:87554521-87554540 | MS.gene072855:CDS | 55.0% |
| ! | GATAACTGGTGCCGGAATCG+AGG | + | chr3.2:87553804-87553823 | MS.gene072855:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | + | chr3.2:87554569-87554588 | MS.gene072855:CDS | 55.0% |
| CACGGTCTTCGACCTCTCAC+CGG | + | chr3.2:87553873-87553892 | MS.gene072855:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr3.2:87556251-87556270 | MS.gene072855:CDS | 60.0% | |
| CCATGGTCATGGAAGCAGCG+AGG | - | chr3.2:87554095-87554114 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACCA+TGG | + | chr3.2:87554092-87554111 | MS.gene072855:CDS | 60.0% | |
| CGCTGCTTCCATGACCATGG+AGG | + | chr3.2:87554095-87554114 | MS.gene072855:CDS | 60.0% | |
| CTCAAGTCCACGTACCGCCT+CGG | - | chr3.2:87556101-87556120 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | + | chr3.2:87554554-87554573 | MS.gene072855:CDS | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | + | chr3.2:87554533-87554552 | MS.gene072855:CDS | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | + | chr3.2:87554568-87554587 | MS.gene072855:CDS | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | + | chr3.2:87554524-87554543 | MS.gene072855:CDS | 60.0% |
| AGTCGAGGCGAAGAAGGCCG+TGG | + | chr3.2:87554560-87554579 | MS.gene072855:CDS | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | + | chr3.2:87554545-87554564 | MS.gene072855:CDS | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | + | chr3.2:87554530-87554549 | MS.gene072855:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87553769 | 87556303 | 87553769 | ID=MS.gene072855 |
| chr3.2 | mRNA | 87553769 | 87556303 | 87553769 | ID=MS.gene072855.t1;Parent=MS.gene072855 |
| chr3.2 | exon | 87553769 | 87554695 | 87553769 | ID=MS.gene072855.t1.exon1;Parent=MS.gene072855.t1 |
| chr3.2 | CDS | 87553769 | 87554695 | 87553769 | ID=cds.MS.gene072855.t1;Parent=MS.gene072855.t1 |
| chr3.2 | exon | 87555794 | 87556303 | 87555794 | ID=MS.gene072855.t1.exon2;Parent=MS.gene072855.t1 |
| chr3.2 | CDS | 87555794 | 87556303 | 87555794 | ID=cds.MS.gene072855.t1;Parent=MS.gene072855.t1 |
| Gene Sequence |
| Protein sequence |
