Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072854.t1 | XP_003603337.2 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 9.10E-197 | 696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072854.t1 | D2XNQ8 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 2.2e-199 | 696.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072854.t1 | G7JAE9 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 6.5e-197 | 696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072854.t1 | MTR_3g106480 | 99.582 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 0.0 | 970 |
| MS.gene072854.t1 | MTR_3g106485 | 94.142 | 478 | 24 | 2 | 1 | 478 | 1 | 474 | 0.0 | 887 |
| MS.gene072854.t1 | MTR_3g106420 | 91.841 | 478 | 39 | 0 | 1 | 478 | 3 | 480 | 0.0 | 877 |
| MS.gene072854.t1 | MTR_1g073400 | 90.795 | 478 | 40 | 1 | 1 | 478 | 1 | 474 | 0.0 | 847 |
| MS.gene072854.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 1 | 478 | 1 | 473 | 0.0 | 844 |
| MS.gene072854.t1 | MTR_1g083190 | 89.749 | 478 | 41 | 1 | 1 | 478 | 3 | 472 | 0.0 | 842 |
| MS.gene072854.t1 | MTR_3g106430 | 92.034 | 477 | 34 | 2 | 1 | 477 | 1 | 473 | 0.0 | 840 |
| MS.gene072854.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 837 |
| MS.gene072854.t1 | MTR_3g106470 | 80.922 | 477 | 35 | 2 | 1 | 477 | 32 | 452 | 0.0 | 737 |
| MS.gene072854.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 1 | 464 | 1 | 425 | 0.0 | 668 |
| MS.gene072854.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 8.63e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072854.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 1 | 473 | 1 | 461 | 0.0 | 725 |
| MS.gene072854.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 715 |
| MS.gene072854.t1 | AT5G64870 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 660 |
Find 121 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.052081 | 3.2:+87559108 | MS.gene072854:CDS |
| AATTGAACCAATTCGGATTA+TGG | 0.158331 | 3.2:+87559044 | MS.gene072854:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.2:+87560738 | MS.gene072854:CDS |
| CTGCTAAAGCCGTGGCTCTA+AGG | 0.254538 | 3.2:+87559437 | MS.gene072854:CDS |
| CATGAATATTTCTCATATTT+GGG | 0.273088 | 3.2:+87559109 | MS.gene072854:CDS |
| GGCTGGAGAAGGTGAGAAAC+AGG | 0.294061 | 3.2:+87559285 | MS.gene072854:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.2:+87559184 | MS.gene072854:CDS |
| TCTAGGTACAAGAGGCTAAC+TGG | 0.321242 | 3.2:+87560411 | MS.gene072854:intron |
| ACTAATGGTGGTGATAATAA+TGG | 0.334485 | 3.2:+87560761 | MS.gene072854:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.339850 | 3.2:-87558909 | None:intergenic |
| CAACTTGAATTGAACCAATT+CGG | 0.339963 | 3.2:+87559037 | MS.gene072854:CDS |
| CATGTTGCCTCCGGCTTGGA+TGG | 0.343865 | 3.2:+87560877 | MS.gene072854:CDS |
| CAATGCCAATGTTAAGCAAT+TGG | 0.346020 | 3.2:+87559072 | MS.gene072854:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.2:+87560665 | MS.gene072854:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.2:+87559197 | MS.gene072854:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.360315 | 3.2:-87558879 | None:intergenic |
| TCAGAATACCTTGTGATAAC+TGG | 0.379855 | 3.2:+87558659 | MS.gene072854:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.2:-87560743 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.2:+87560746 | MS.gene072854:CDS |
| AAGCTTTACATCGTCAATTC+CGG | 0.391365 | 3.2:-87558684 | None:intergenic |
| TGTAAATCCATAATCCGAAT+TGG | 0.394399 | 3.2:-87559051 | None:intergenic |
| CTCCCTGCCGTCTTCACAAT+AGG | 0.407375 | 3.2:+87558818 | MS.gene072854:CDS |
| AAATTAGTTTGGCATATTTG+AGG | 0.439485 | 3.2:-87558868 | None:intergenic |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.2:+87558914 | MS.gene072854:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.2:+87560463 | MS.gene072854:CDS |
| CTAATGGTGGTGATAATAAT+GGG | 0.463009 | 3.2:+87560762 | MS.gene072854:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.2:+87559198 | MS.gene072854:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.2:+87560784 | MS.gene072854:CDS |
| AAACCAATATCAACATGTAC+CGG | 0.488341 | 3.2:+87558624 | None:intergenic |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.2:-87560720 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.2:+87560854 | MS.gene072854:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.493478 | 3.2:+87558967 | MS.gene072854:CDS |
| TGCTAAAGCCGTGGCTCTAA+GGG | 0.495165 | 3.2:+87559438 | MS.gene072854:CDS |
| GGAACAACTACACAGCTGTA+AGG | 0.502820 | 3.2:+87560645 | MS.gene072854:CDS |
| CTAGGTACAAGAGGCTAACT+GGG | 0.505098 | 3.2:+87560412 | MS.gene072854:intron |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.2:+87559146 | MS.gene072854:CDS |
| GGACCTATTGTGAAGACGGC+AGG | 0.507327 | 3.2:-87558821 | None:intergenic |
| ATGTTGCCTCCGGCTTGGAT+GGG | 0.512421 | 3.2:+87560878 | MS.gene072854:CDS |
| TTGGACAATGGCGGCTCAAG+TGG | 0.512749 | 3.2:+87559402 | MS.gene072854:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.2:+87559268 | MS.gene072854:CDS |
| CAGGCATGTTGCCTCCGGCT+TGG | 0.517134 | 3.2:+87560873 | MS.gene072854:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.2:-87560862 | None:intergenic |
| AGCTTTAAGCTTCTCAGTAG+TGG | 0.525292 | 3.2:-87559503 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.2:+87559085 | MS.gene072854:CDS |
| GGCTCAAGTGGCTGAGCTTG+AGG | 0.528141 | 3.2:+87559414 | MS.gene072854:CDS |
| GCAAACAGGCATGTTGCCTC+CGG | 0.529165 | 3.2:+87560868 | MS.gene072854:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.2:+87560749 | MS.gene072854:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.2:+87560785 | MS.gene072854:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87560801 | None:intergenic |
| ATCCACCAATTGCTTAACAT+TGG | 0.540817 | 3.2:-87559077 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.541119 | 3.2:+87560623 | MS.gene072854:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.542934 | 3.2:+87558742 | MS.gene072854:CDS |
| ATTCAACACTAGCTTTGCTA+AGG | 0.544556 | 3.2:-87559531 | None:intergenic |
| TGAGAGGTCGAAGACGGTGC+AGG | 0.545239 | 3.2:-87558738 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.2:+87560578 | MS.gene072854:CDS |
| ACTTCGAAGGTGTAATTCAC+CGG | 0.552954 | 3.2:-87558761 | None:intergenic |
| AAGACGGTGCAGGATTGACC+CGG | 0.554154 | 3.2:-87558728 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 3.2:+87559348 | MS.gene072854:CDS |
| GAAGAAAGCTGCTTGGACAA+TGG | 0.561707 | 3.2:+87559390 | MS.gene072854:CDS |
| AGCTTTCTTCTTAGCCAACT+CGG | 0.562096 | 3.2:-87559377 | None:intergenic |
| TAGTGTTGAATATGACACTA+AGG | 0.562966 | 3.2:+87559543 | MS.gene072854:CDS |
| TAAAGCTTGAAAAGAAAGCA+TGG | 0.566286 | 3.2:+87558699 | MS.gene072854:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.2:-87558809 | None:intergenic |
| TGGCTAAGAAGAAAGCTGCT+TGG | 0.570632 | 3.2:+87559383 | MS.gene072854:CDS |
| GGCTGAGGCTAATTCCGAGT+TGG | 0.571047 | 3.2:+87559363 | MS.gene072854:CDS |
| GGTAAAGATCCCATCCAAGC+CGG | 0.577737 | 3.2:-87560887 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87560803 | MS.gene072854:CDS |
| TACCTTGTGATAACTGGCGC+CGG | 0.580254 | 3.2:+87558665 | MS.gene072854:CDS |
| TGCCAATGTTAAGCAATTGG+TGG | 0.581862 | 3.2:+87559075 | MS.gene072854:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.2:+87560590 | MS.gene072854:CDS |
| CTGGATGCTCTAGGTACAAG+AGG | 0.587653 | 3.2:+87560403 | MS.gene072854:intron |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.2:+87559342 | MS.gene072854:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.590772 | 3.2:-87559446 | None:intergenic |
| AGGTGTAATTCACCGGTGAG+AGG | 0.592989 | 3.2:-87558754 | None:intergenic |
| GAACAACTACACAGCTGTAA+GGG | 0.593770 | 3.2:+87560646 | MS.gene072854:CDS |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3.2:+87559263 | MS.gene072854:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.596495 | 3.2:-87558774 | None:intergenic |
| CCTCGTTGCTTCAATGACAA+TGG | 0.596534 | 3.2:+87558961 | MS.gene072854:CDS |
| TTAGTTTGGCATATTTGAGG+AGG | 0.598221 | 3.2:-87558865 | None:intergenic |
| ACGAGGACCTATTGTGAAGA+CGG | 0.598551 | 3.2:-87558825 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.2:+87560579 | MS.gene072854:CDS |
| GAAAATTGATGCAGAGACAA+AGG | 0.598845 | 3.2:+87559246 | MS.gene072854:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.2:+87560469 | MS.gene072854:CDS |
| GCGATGCAGAGGGCTGGAGA+AGG | 0.602267 | 3.2:+87559274 | MS.gene072854:CDS |
| GACCTATTGTGAAGACGGCA+GGG | 0.603396 | 3.2:-87558820 | None:intergenic |
| TAATGGTGGTGATAATAATG+GGG | 0.604276 | 3.2:+87560763 | MS.gene072854:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.606472 | 3.2:-87558892 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 3.2:+87558926 | MS.gene072854:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 3.2:+87559467 | MS.gene072854:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.2:+87559454 | MS.gene072854:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.2:+87559175 | MS.gene072854:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.2:-87558891 | None:intergenic |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.2:+87559126 | MS.gene072854:CDS |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3.2:+87559264 | MS.gene072854:CDS |
| TTGTTTGCGAGCATAAAATG+TGG | 0.626952 | 3.2:-87560519 | None:intergenic |
| AATGGTGGTGATAATAATGG+GGG | 0.628201 | 3.2:+87560764 | MS.gene072854:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 3.2:-87558744 | None:intergenic |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.2:+87559202 | MS.gene072854:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.2:-87558808 | None:intergenic |
| GCTTGAGGCTGCTAAAGCCG+TGG | 0.632981 | 3.2:+87559429 | MS.gene072854:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 3.2:-87559103 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.2:+87559147 | MS.gene072854:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.2:+87560703 | MS.gene072854:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.2:+87559459 | MS.gene072854:CDS |
| AACCAATATCAACATGTACC+GGG | 0.649459 | 3.2:+87558625 | None:intergenic |
| TTCCGGCGCCAGTTATCACA+AGG | 0.656470 | 3.2:-87558667 | None:intergenic |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 3.2:-87560842 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.2:+87560668 | MS.gene072854:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 3.2:-87560845 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.2:+87560706 | MS.gene072854:CDS |
| AGACGGTGCAGGATTGACCC+GGG | 0.662490 | 3.2:-87558727 | None:intergenic |
| GTACACTTCTCAATGCACTT+GGG | 0.664100 | 3.2:+87560624 | MS.gene072854:CDS |
| GAAAGCTGCTTGGACAATGG+CGG | 0.679670 | 3.2:+87559393 | MS.gene072854:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.680440 | 3.2:-87558893 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.2:+87560713 | MS.gene072854:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.2:+87559156 | MS.gene072854:CDS |
| GCTGGAGAAGGTGAGAAACA+GGG | 0.684270 | 3.2:+87559286 | MS.gene072854:CDS |
| AAAGATCCCATCCAAGCCGG+AGG | 0.687910 | 3.2:-87560884 | None:intergenic |
| AGAAACAGGGAATTAAAGTG+AGG | 0.688934 | 3.2:+87559299 | MS.gene072854:CDS |
| CTTTCGTAATCGTCAACACG+AGG | 0.692794 | 3.2:-87558842 | None:intergenic |
| CCATTGTCATTGAAGCAACG+AGG | 0.710320 | 3.2:-87558961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATAAAATTAAATCATT+CGG | + | chr3.2:87560060-87560079 | MS.gene072854:intron | 10.0% |
| !!! | ATTAAAAATCTTCTTTTTTT+TGG | - | chr3.2:87560355-87560374 | None:intergenic | 10.0% |
| !!! | TATGTTTTACTTTTAATCAA+CGG | - | chr3.2:87560287-87560306 | None:intergenic | 15.0% |
| !! | AAAAGTAAAACATAACAAGT+AGG | + | chr3.2:87560293-87560312 | MS.gene072854:intron | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | + | chr3.2:87560436-87560455 | MS.gene072854:CDS | 20.0% |
| !! | CATGAATATTTCTCATATTT+GGG | + | chr3.2:87559109-87559128 | MS.gene072854:CDS | 20.0% |
| !! | CCACAATATAGTTTAATAAA+AGG | - | chr3.2:87559879-87559898 | None:intergenic | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | + | chr3.2:87559108-87559127 | MS.gene072854:CDS | 20.0% |
| !! | TTAAATTCATACATATACCT+AGG | - | chr3.2:87559740-87559759 | None:intergenic | 20.0% |
| !!! | AAAAATCTTCTTTTTTTTGG+TGG | - | chr3.2:87560352-87560371 | None:intergenic | 20.0% |
| !!! | CCTTTTATTAAACTATATTG+TGG | + | chr3.2:87559876-87559895 | MS.gene072854:intron | 20.0% |
| ! | AAGAAAAAGATTGAAGAATG+TGG | + | chr3.2:87560220-87560239 | MS.gene072854:intron | 25.0% |
| ! | AAGAAGAAGTTAAATTTGCA+AGG | - | chr3.2:87559574-87559593 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr3.2:87560746-87560765 | MS.gene072854:CDS | 25.0% |
| ! | ACACAAATAATAGCAAGAAA+AGG | - | chr3.2:87560150-87560169 | None:intergenic | 25.0% |
| ! | ATATTGAAACCAATCACAAA+GGG | - | chr3.2:87559775-87559794 | None:intergenic | 25.0% |
| ! | ATGATATATGTTCATTTGCA+AGG | - | chr3.2:87560023-87560042 | None:intergenic | 25.0% |
| ! | GTATATTAACTATGGATTTG+CGG | - | chr3.2:87560001-87560020 | None:intergenic | 25.0% |
| ! | TATATTGAAACCAATCACAA+AGG | - | chr3.2:87559776-87559795 | None:intergenic | 25.0% |
| ! | TTAACAAAAATTGACAAGGT+TGG | - | chr3.2:87560257-87560276 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr3.2:87560746-87560765 | None:intergenic | 25.0% |
| ! | TTTGCAAGGTATATTAACTA+TGG | - | chr3.2:87560009-87560028 | None:intergenic | 25.0% |
| !! | AAATTAGTTTGGCATATTTG+AGG | - | chr3.2:87558871-87558890 | None:intergenic | 25.0% |
| !! | TAATGTTTAATCTGTCGATT+GGG | - | chr3.2:87559946-87559965 | None:intergenic | 25.0% |
| !!! | AATGTTTACTTTTTAAGTGC+TGG | + | chr3.2:87560372-87560391 | MS.gene072854:intron | 25.0% |
| !!! | TCACTGTAATTACAGTTTTT+TGG | + | chr3.2:87559654-87559673 | MS.gene072854:intron | 25.0% |
| AAAGGATCATGATTTAGACT+TGG | - | chr3.2:87560132-87560151 | None:intergenic | 30.0% | |
| AAGTAGCAAAATGCTAATTG+AGG | + | chr3.2:87559975-87559994 | MS.gene072854:intron | 30.0% | |
| AATTGAACCAATTCGGATTA+TGG | + | chr3.2:87559044-87559063 | MS.gene072854:CDS | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | + | chr3.2:87560749-87560768 | MS.gene072854:CDS | 30.0% | |
| CAACTTGAATTGAACCAATT+CGG | + | chr3.2:87559037-87559056 | MS.gene072854:CDS | 30.0% | |
| CCTGTTAACAAAAATTGACA+AGG | - | chr3.2:87560261-87560280 | None:intergenic | 30.0% | |
| GTAATGTTTAATCTGTCGAT+TGG | - | chr3.2:87559947-87559966 | None:intergenic | 30.0% | |
| GTTATACGCAAAGAAAAAAG+AGG | + | chr3.2:87560556-87560575 | MS.gene072854:CDS | 30.0% | |
| TAAAGCTTGAAAAGAAAGCA+TGG | + | chr3.2:87558699-87558718 | MS.gene072854:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr3.2:87559106-87559125 | None:intergenic | 30.0% | |
| TATTGAAACCAATCACAAAG+GGG | - | chr3.2:87559774-87559793 | None:intergenic | 30.0% | |
| TATTTACGAAGATCATAGGA+CGG | + | chr3.2:87559822-87559841 | MS.gene072854:intron | 30.0% | |
| TGCATATTTACGAAGATCAT+AGG | + | chr3.2:87559818-87559837 | MS.gene072854:intron | 30.0% | |
| TGTAAATCCATAATCCGAAT+TGG | - | chr3.2:87559054-87559073 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr3.2:87560738-87560757 | MS.gene072854:CDS | 30.0% | |
| ! | AACTTTAAGTTTAAGCTCCT+AGG | + | chr3.2:87559720-87559739 | MS.gene072854:intron | 30.0% |
| ! | AATGTTTAATCTGTCGATTG+GGG | - | chr3.2:87559945-87559964 | None:intergenic | 30.0% |
| ! | ACTAATGGTGGTGATAATAA+TGG | + | chr3.2:87560761-87560780 | MS.gene072854:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.2:87560665-87560684 | MS.gene072854:CDS | 30.0% |
| ! | CCTTGTCAATTTTTGTTAAC+AGG | + | chr3.2:87560258-87560277 | MS.gene072854:intron | 30.0% |
| ! | CTAATGGTGGTGATAATAAT+GGG | + | chr3.2:87560762-87560781 | MS.gene072854:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.2:87560668-87560687 | MS.gene072854:CDS | 30.0% |
| ! | TAATGGTGGTGATAATAATG+GGG | + | chr3.2:87560763-87560782 | MS.gene072854:CDS | 30.0% |
| ! | TAGTGTTGAATATGACACTA+AGG | + | chr3.2:87559543-87559562 | MS.gene072854:CDS | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | + | chr3.2:87559333-87559352 | MS.gene072854:CDS | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | chr3.2:87559198-87559217 | MS.gene072854:CDS | 30.0% |
| !!! | AATCTTCTTTTTTTTGGTGG+TGG | - | chr3.2:87560349-87560368 | None:intergenic | 30.0% |
| AACGAGTTCATTAACGTGAT+TGG | - | chr3.2:87558912-87558931 | None:intergenic | 35.0% | |
| AAGCTTTACATCGTCAATTC+CGG | - | chr3.2:87558687-87558706 | None:intergenic | 35.0% | |
| ACTATATTGTGGTTGCAGAT+AGG | + | chr3.2:87559887-87559906 | MS.gene072854:intron | 35.0% | |
| AGAAACAGGGAATTAAAGTG+AGG | + | chr3.2:87559299-87559318 | MS.gene072854:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr3.2:87560463-87560482 | MS.gene072854:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | - | chr3.2:87558882-87558901 | None:intergenic | 35.0% | |
| ATCCACCAATTGCTTAACAT+TGG | - | chr3.2:87559080-87559099 | None:intergenic | 35.0% | |
| ATTGAAACCAATCACAAAGG+GGG | - | chr3.2:87559773-87559792 | None:intergenic | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | - | chr3.2:87558894-87558913 | None:intergenic | 35.0% | |
| ATTTACGAAGATCATAGGAC+GGG | + | chr3.2:87559823-87559842 | MS.gene072854:intron | 35.0% | |
| CAATGCCAATGTTAAGCAAT+TGG | + | chr3.2:87559072-87559091 | MS.gene072854:CDS | 35.0% | |
| GAAAATTGATGCAGAGACAA+AGG | + | chr3.2:87559246-87559265 | MS.gene072854:CDS | 35.0% | |
| GACGGGAGTTAAAAATTCAA+TGG | + | chr3.2:87559840-87559859 | MS.gene072854:intron | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | - | chr3.2:87558895-87558914 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.2:87559184-87559203 | MS.gene072854:CDS | 35.0% | |
| TCAGAATACCTTGTGATAAC+TGG | + | chr3.2:87558659-87558678 | MS.gene072854:CDS | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | - | chr3.2:87558896-87558915 | None:intergenic | 35.0% | |
| TTGTTTGCGAGCATAAAATG+TGG | - | chr3.2:87560522-87560541 | None:intergenic | 35.0% | |
| ! | AATAATGGGGGAATAACTGA+AGG | + | chr3.2:87560776-87560795 | MS.gene072854:CDS | 35.0% |
| ! | AATGGTGGTGATAATAATGG+GGG | + | chr3.2:87560764-87560783 | MS.gene072854:CDS | 35.0% |
| ! | TATTTTACCCCCTTTGTGAT+TGG | + | chr3.2:87559763-87559782 | MS.gene072854:intron | 35.0% |
| ! | TTAGTTTGGCATATTTGAGG+AGG | - | chr3.2:87558868-87558887 | None:intergenic | 35.0% |
| !! | AAAGAAAGCATGGATTTTCC+CGG | + | chr3.2:87558709-87558728 | MS.gene072854:CDS | 35.0% |
| !! | ATTCAACACTAGCTTTGCTA+AGG | - | chr3.2:87559534-87559553 | None:intergenic | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr3.2:87559197-87559216 | MS.gene072854:CDS | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | + | chr3.2:87560384-87560403 | MS.gene072854:intron | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | + | chr3.2:87559264-87559283 | MS.gene072854:CDS | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87560804-87560823 | None:intergenic | 40.0% | |
| AGCTTTCTTCTTAGCCAACT+CGG | - | chr3.2:87559380-87559399 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.2:87560623-87560642 | MS.gene072854:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87560803-87560822 | MS.gene072854:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr3.2:87560564-87560583 | MS.gene072854:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | + | chr3.2:87558914-87558933 | MS.gene072854:CDS | 40.0% | |
| CTTCGTAAATATGCAGTGCA+CGG | - | chr3.2:87559813-87559832 | None:intergenic | 40.0% | |
| GAACAACTACACAGCTGTAA+GGG | + | chr3.2:87560646-87560665 | MS.gene072854:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.2:87560703-87560722 | MS.gene072854:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr3.2:87560563-87560582 | MS.gene072854:CDS | 40.0% | |
| GTACACTTCTCAATGCACTT+GGG | + | chr3.2:87560624-87560643 | MS.gene072854:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTCT+AGG | + | chr3.2:87560394-87560413 | MS.gene072854:intron | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr3.2:87560848-87560867 | None:intergenic | 40.0% | |
| TGCCAATGTTAAGCAATTGG+TGG | + | chr3.2:87559075-87559094 | MS.gene072854:CDS | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | + | chr3.2:87558967-87558986 | MS.gene072854:CDS | 40.0% | |
| TGTTGAGTTAGCAAGTGCTA+TGG | + | chr3.2:87560185-87560204 | MS.gene072854:intron | 40.0% | |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | + | chr3.2:87558977-87558996 | MS.gene072854:CDS | 40.0% |
| ! | ACTTCGAAGGTGTAATTCAC+CGG | - | chr3.2:87558764-87558783 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | chr3.2:87558646-87558665 | None:intergenic | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+GGG | + | chr3.2:87558710-87558729 | MS.gene072854:CDS | 40.0% |
| !! | AGCTTTAAGCTTCTCAGTAG+TGG | - | chr3.2:87559506-87559525 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | chr3.2:87559202-87559221 | MS.gene072854:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr3.2:87560854-87560873 | MS.gene072854:CDS | 45.0% | |
| ACGAGGACCTATTGTGAAGA+CGG | - | chr3.2:87558828-87558847 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr3.2:87558777-87558796 | None:intergenic | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | + | chr3.2:87559263-87559282 | MS.gene072854:CDS | 45.0% | |
| CCATTGTCATTGAAGCAACG+AGG | - | chr3.2:87558964-87558983 | None:intergenic | 45.0% | |
| CCTCGTTGCTTCAATGACAA+TGG | + | chr3.2:87558961-87558980 | MS.gene072854:CDS | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | chr3.2:87560562-87560581 | MS.gene072854:CDS | 45.0% | |
| CTAGGTACAAGAGGCTAACT+GGG | + | chr3.2:87560412-87560431 | MS.gene072854:intron | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | + | chr3.2:87558926-87558945 | MS.gene072854:CDS | 45.0% | |
| CTTTCGTAATCGTCAACACG+AGG | - | chr3.2:87558845-87558864 | None:intergenic | 45.0% | |
| GAAGAAAGCTGCTTGGACAA+TGG | + | chr3.2:87559390-87559409 | MS.gene072854:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr3.2:87559342-87559361 | MS.gene072854:CDS | 45.0% | |
| GGAACAACTACACAGCTGTA+AGG | + | chr3.2:87560645-87560664 | MS.gene072854:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr3.2:87559175-87559194 | MS.gene072854:CDS | 45.0% | |
| TCTAGGTACAAGAGGCTAAC+TGG | + | chr3.2:87560411-87560430 | MS.gene072854:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87560469-87560488 | MS.gene072854:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr3.2:87560706-87560725 | MS.gene072854:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr3.2:87560845-87560864 | None:intergenic | 45.0% | |
| TGGCTAAGAAGAAAGCTGCT+TGG | + | chr3.2:87559383-87559402 | MS.gene072854:CDS | 45.0% | |
| ! | AGGGAGTTTTTCTGCACTCA+TGG | - | chr3.2:87558792-87558811 | None:intergenic | 45.0% |
| ! | CATCAATTTTCGCTGCGTTC+TGG | - | chr3.2:87559237-87559256 | None:intergenic | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | + | chr3.2:87559126-87559145 | MS.gene072854:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | + | chr3.2:87560785-87560804 | MS.gene072854:CDS | 45.0% |
| AATATGCAGTGCACGGACGT+AGG | - | chr3.2:87559806-87559825 | None:intergenic | 50.0% | |
| AGGTGTAATTCACCGGTGAG+AGG | - | chr3.2:87558757-87558776 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr3.2:87559467-87559486 | MS.gene072854:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | + | chr3.2:87560579-87560598 | MS.gene072854:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | + | chr3.2:87559454-87559473 | MS.gene072854:CDS | 50.0% | |
| GAAAGCTGCTTGGACAATGG+CGG | + | chr3.2:87559393-87559412 | MS.gene072854:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr3.2:87559156-87559175 | MS.gene072854:CDS | 50.0% | |
| GACCTATTGTGAAGACGGCA+GGG | - | chr3.2:87558823-87558842 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr3.2:87560865-87560884 | None:intergenic | 50.0% | |
| GCTGGAGAAGGTGAGAAACA+GGG | + | chr3.2:87559286-87559305 | MS.gene072854:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr3.2:87559147-87559166 | MS.gene072854:CDS | 50.0% | |
| GGTAAAGATCCCATCCAAGC+CGG | - | chr3.2:87560890-87560909 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr3.2:87560590-87560609 | MS.gene072854:CDS | 50.0% | |
| TACCTTGTGATAACTGGCGC+CGG | + | chr3.2:87558665-87558684 | MS.gene072854:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr3.2:87559146-87559165 | MS.gene072854:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr3.2:87559085-87559104 | MS.gene072854:CDS | 50.0% |
| ! | CTGGATGCTCTAGGTACAAG+AGG | + | chr3.2:87560403-87560422 | MS.gene072854:intron | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCTT+TGG | + | chr3.2:87560490-87560509 | MS.gene072854:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | + | chr3.2:87560784-87560803 | MS.gene072854:CDS | 50.0% |
| !! | TGCTAAAGCCGTGGCTCTAA+GGG | + | chr3.2:87559438-87559457 | MS.gene072854:CDS | 50.0% |
| AAAGATCCCATCCAAGCCGG+AGG | - | chr3.2:87560887-87560906 | None:intergenic | 55.0% | |
| AAGACGGCAGGGAGAACGAA+AGG | - | chr3.2:87558812-87558831 | None:intergenic | 55.0% | |
| AAGACGGTGCAGGATTGACC+CGG | - | chr3.2:87558731-87558750 | None:intergenic | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr3.2:87559348-87559367 | MS.gene072854:CDS | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | chr3.2:87558811-87558830 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr3.2:87560713-87560732 | MS.gene072854:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | - | chr3.2:87559449-87559468 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+AGG | + | chr3.2:87558818-87558837 | MS.gene072854:CDS | 55.0% | |
| GCAAACAGGCATGTTGCCTC+CGG | + | chr3.2:87560868-87560887 | MS.gene072854:CDS | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | + | chr3.2:87560578-87560597 | MS.gene072854:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | + | chr3.2:87559459-87559478 | MS.gene072854:CDS | 55.0% | |
| GGACCTATTGTGAAGACGGC+AGG | - | chr3.2:87558824-87558843 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATTCCGAGT+TGG | + | chr3.2:87559363-87559382 | MS.gene072854:CDS | 55.0% | |
| GGCTGGAGAAGGTGAGAAAC+AGG | + | chr3.2:87559285-87559304 | MS.gene072854:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr3.2:87559268-87559287 | MS.gene072854:CDS | 55.0% | |
| TTCCGGCGCCAGTTATCACA+AGG | - | chr3.2:87558670-87558689 | None:intergenic | 55.0% | |
| TTGGACAATGGCGGCTCAAG+TGG | + | chr3.2:87559402-87559421 | MS.gene072854:CDS | 55.0% | |
| ! | CTGCTAAAGCCGTGGCTCTA+AGG | + | chr3.2:87559437-87559456 | MS.gene072854:CDS | 55.0% |
| !! | ATGTTGCCTCCGGCTTGGAT+GGG | + | chr3.2:87560878-87560897 | MS.gene072854:CDS | 55.0% |
| AGACGGTGCAGGATTGACCC+GGG | - | chr3.2:87558730-87558749 | None:intergenic | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr3.2:87558747-87558766 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr3.2:87558742-87558761 | MS.gene072854:CDS | 60.0% | |
| GCTTGAGGCTGCTAAAGCCG+TGG | + | chr3.2:87559429-87559448 | MS.gene072854:CDS | 60.0% | |
| GGCTCAAGTGGCTGAGCTTG+AGG | + | chr3.2:87559414-87559433 | MS.gene072854:CDS | 60.0% | |
| TGAGAGGTCGAAGACGGTGC+AGG | - | chr3.2:87558741-87558760 | None:intergenic | 60.0% | |
| !! | CATGTTGCCTCCGGCTTGGA+TGG | + | chr3.2:87560877-87560896 | MS.gene072854:CDS | 60.0% |
| CAGGCATGTTGCCTCCGGCT+TGG | + | chr3.2:87560873-87560892 | MS.gene072854:CDS | 65.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | - | chr3.2:87560723-87560742 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+AGG | + | chr3.2:87559274-87559293 | MS.gene072854:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87558638 | 87560925 | 87558638 | ID=MS.gene072854 |
| chr3.2 | mRNA | 87558638 | 87560925 | 87558638 | ID=MS.gene072854.t1;Parent=MS.gene072854 |
| chr3.2 | exon | 87558638 | 87559564 | 87558638 | ID=MS.gene072854.t1.exon1;Parent=MS.gene072854.t1 |
| chr3.2 | CDS | 87558638 | 87559564 | 87558638 | ID=cds.MS.gene072854.t1;Parent=MS.gene072854.t1 |
| chr3.2 | exon | 87560416 | 87560925 | 87560416 | ID=MS.gene072854.t1.exon2;Parent=MS.gene072854.t1 |
| chr3.2 | CDS | 87560416 | 87560925 | 87560416 | ID=cds.MS.gene072854.t1;Parent=MS.gene072854.t1 |
| Gene Sequence |
| Protein sequence |
