Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072853.t1 | PNY01485.1 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 7.20E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072853.t1 | D2XNQ9 | 90.8 | 479 | 44 | 0 | 1 | 479 | 1 | 479 | 3.0e-180 | 632.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072853.t1 | A0A2K3NEM2 | 83.4 | 477 | 77 | 1 | 3 | 479 | 1 | 475 | 5.2e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053330 | MS.gene072853 | 0.800178 | 1.63E-48 | -1.69E-46 |
| MS.gene058142 | MS.gene072853 | 0.841903 | 3.58E-58 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072853.t1 | MTR_3g106420 | 93.737 | 479 | 30 | 0 | 1 | 479 | 1 | 479 | 0.0 | 892 |
| MS.gene072853.t1 | MTR_3g106480 | 91.195 | 477 | 42 | 0 | 3 | 479 | 1 | 477 | 0.0 | 889 |
| MS.gene072853.t1 | MTR_3g106485 | 92.872 | 477 | 30 | 2 | 3 | 479 | 1 | 473 | 0.0 | 870 |
| MS.gene072853.t1 | MTR_1g083190 | 92.067 | 479 | 30 | 1 | 1 | 479 | 1 | 471 | 0.0 | 868 |
| MS.gene072853.t1 | MTR_3g106430 | 92.243 | 477 | 33 | 2 | 3 | 479 | 1 | 473 | 0.0 | 838 |
| MS.gene072853.t1 | MTR_1g073400 | 89.937 | 477 | 44 | 1 | 3 | 479 | 1 | 473 | 0.0 | 832 |
| MS.gene072853.t1 | MTR_1g115145 | 87.657 | 478 | 52 | 3 | 3 | 479 | 1 | 472 | 0.0 | 828 |
| MS.gene072853.t1 | MTR_1g071130 | 85.115 | 477 | 42 | 2 | 3 | 479 | 1 | 448 | 0.0 | 827 |
| MS.gene072853.t1 | MTR_3g106470 | 86.875 | 480 | 7 | 2 | 1 | 480 | 30 | 453 | 0.0 | 792 |
| MS.gene072853.t1 | MTR_8g063830 | 81.290 | 465 | 46 | 5 | 3 | 466 | 1 | 425 | 0.0 | 683 |
| MS.gene072853.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 3.91e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072853.t1 | AT5G25260 | 73.840 | 474 | 112 | 2 | 3 | 476 | 1 | 462 | 0.0 | 724 |
| MS.gene072853.t1 | AT5G25250 | 73.013 | 478 | 115 | 2 | 3 | 480 | 1 | 464 | 0.0 | 716 |
| MS.gene072853.t1 | AT5G64870 | 70.440 | 477 | 130 | 1 | 4 | 480 | 3 | 468 | 0.0 | 659 |
Find 113 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.044243 | 3.2:+87565375 | MS.gene072853:CDS |
| CAACTTGAGTTGAATCAATT+TGG | 0.187809 | 3.2:+87565304 | MS.gene072853:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.2:+87566816 | MS.gene072853:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.283314 | 3.2:+87565376 | MS.gene072853:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.2:+87565704 | MS.gene072853:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.2:-87565176 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.312153 | 3.2:+87566955 | MS.gene072853:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.2:+87565451 | MS.gene072853:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.2:+87566743 | MS.gene072853:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.2:+87565085 | MS.gene072853:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3.2:-87565028 | None:intergenic |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.2:-87566821 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.2:+87566824 | MS.gene072853:CDS |
| GTTATTTCGCTGCAGAGAAC+TGG | 0.390936 | 3.2:+87565535 | MS.gene072853:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.404543 | 3.2:+87565464 | MS.gene072853:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.2:+87564926 | MS.gene072853:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.2:+87566489 | MS.gene072853:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.2:+87565105 | MS.gene072853:CDS |
| AGCTTGGACTAAGGCGGCTC+AGG | 0.418423 | 3.2:+87565666 | MS.gene072853:CDS |
| GAAGAAGGCAGCTTGGACTA+AGG | 0.419386 | 3.2:+87565657 | MS.gene072853:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.2:+87565181 | MS.gene072853:CDS |
| CGGTCAATCCTGCTCCGTCT+TGG | 0.421815 | 3.2:+87564997 | MS.gene072853:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.453058 | 3.2:-87565146 | None:intergenic |
| CAATGCGAATGTTAAGCAAC+TGG | 0.456641 | 3.2:+87565339 | MS.gene072853:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.466301 | 3.2:+87566956 | MS.gene072853:CDS |
| CAAGACGGAGCAGGATTGAC+CGG | 0.473034 | 3.2:-87564996 | None:intergenic |
| TGGACTAATGGTGGTGATAG+TGG | 0.473313 | 3.2:+87566836 | MS.gene072853:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 3.2:+87564977 | MS.gene072853:CDS |
| CGGGCATGTTGCCTCCTGCT+TGG | 0.479649 | 3.2:+87566951 | MS.gene072853:CDS |
| GGCTGAAGTAGAGGCGAAGA+AGG | 0.482630 | 3.2:+87565690 | MS.gene072853:CDS |
| GAAACAACTACACTGCTGTA+AGG | 0.484359 | 3.2:+87566723 | MS.gene072853:CDS |
| TAAGACTGTCCATGAGCAAA+CGG | 0.494142 | 3.2:+87566931 | MS.gene072853:CDS |
| CTCAAGTCCGCGTACTGCCT+CGG | 0.500340 | 3.2:-87566798 | None:intergenic |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.2:-87565088 | None:intergenic |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.505461 | 3.2:+87565669 | MS.gene072853:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.2:+87565413 | MS.gene072853:CDS |
| CAGTGTTCAATATGAAACTA+AGG | 0.509433 | 3.2:+87565810 | MS.gene072853:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.2:+87566541 | MS.gene072853:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 3.2:+87565234 | MS.gene072853:CDS |
| CTCCGTCTTGGACCTCTCAC+CGG | 0.514067 | 3.2:+87565009 | MS.gene072853:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.515574 | 3.2:+87565642 | MS.gene072853:CDS |
| CTAAGGGATGCTGAGTTACA+AGG | 0.517627 | 3.2:+87565721 | MS.gene072853:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.2:-87565076 | None:intergenic |
| GCAACATGCCCGTTTGCTCA+TGG | 0.523503 | 3.2:-87566940 | None:intergenic |
| AAGCAACTGGTGGATGTGCC+TGG | 0.524212 | 3.2:+87565352 | MS.gene072853:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.2:+87565705 | MS.gene072853:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.2:-87565065 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+GGG | 0.532359 | 3.2:+87566932 | MS.gene072853:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.2:+87566827 | MS.gene072853:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.2:-87565132 | None:intergenic |
| TGGCTAAGAAGAAGGCAGCT+TGG | 0.534710 | 3.2:+87565650 | MS.gene072853:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87566879 | None:intergenic |
| TGAGAGGTCCAAGACGGAGC+AGG | 0.535402 | 3.2:-87565005 | None:intergenic |
| GAGAGAGGCTGAAGTGGCGG+AGG | 0.538584 | 3.2:+87565615 | MS.gene072853:CDS |
| GGCTCAGGTGGCTGAAGTAG+AGG | 0.543694 | 3.2:+87565681 | MS.gene072853:CDS |
| ATTGAACACTGGCTTTGCTA+AGG | 0.543911 | 3.2:-87565798 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.2:+87566656 | MS.gene072853:CDS |
| GATAAGGCTCCCATCCAAGC+AGG | 0.548081 | 3.2:-87566965 | None:intergenic |
| GAGAACTGGAGAGGGTGACA+AGG | 0.548225 | 3.2:+87565549 | MS.gene072853:CDS |
| GAATCAGAGAGAGGCTGAAG+TGG | 0.550154 | 3.2:+87565609 | MS.gene072853:CDS |
| CTTAGTTTCATATTGAACAC+TGG | 0.552173 | 3.2:-87565809 | None:intergenic |
| GGCGGAGGCTAATTCTGAGT+TGG | 0.552406 | 3.2:+87565630 | MS.gene072853:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.2:+87565579 | MS.gene072853:CDS |
| AAACAACTACACTGCTGTAA+GGG | 0.568312 | 3.2:+87566724 | MS.gene072853:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.2:+87566701 | MS.gene072853:CDS |
| TCAGAGAGAGGCTGAAGTGG+CGG | 0.571247 | 3.2:+87565612 | MS.gene072853:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 3.2:+87564966 | MS.gene072853:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.2:-87565239 | None:intergenic |
| AGTAGAGGCGAAGAAGGCCG+TGG | 0.579775 | 3.2:+87565696 | MS.gene072853:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87566881 | MS.gene072853:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 3.2:+87566568 | MS.gene072853:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.2:+87566668 | MS.gene072853:CDS |
| AACTGGAGAGGGTGACAAGG+AGG | 0.588193 | 3.2:+87565552 | MS.gene072853:CDS |
| AAGACGGAGCAGGATTGACC+GGG | 0.589066 | 3.2:-87564995 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.2:+87566657 | MS.gene072853:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.2:+87566547 | MS.gene072853:CDS |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3.2:-87565041 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.2:+87565193 | MS.gene072853:CDS |
| ATTGGTTCGAAATTGAGGCA+AGG | 0.608694 | 3.2:+87565469 | MS.gene072853:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.2:+87565734 | MS.gene072853:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.2:+87565442 | MS.gene072853:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.2:+87566490 | MS.gene072853:intron |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3.2:-87565021 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.2:-87566923 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.620084 | 3.2:+87565231 | MS.gene072853:CDS |
| TTCGCTGCAGAGAACTGGAG+AGG | 0.620124 | 3.2:+87565540 | MS.gene072853:CDS |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.2:+87565393 | MS.gene072853:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.626113 | 3.2:+87565194 | MS.gene072853:CDS |
| ATTAATGCCGAGGCAGTACG+CGG | 0.627180 | 3.2:+87566791 | MS.gene072853:CDS |
| GGGACTTTATCGTGTAGCAA+AGG | 0.633548 | 3.2:+87564901 | MS.gene072853:CDS |
| ACTGGAGAGGGTGACAAGGA+GGG | 0.634623 | 3.2:+87565553 | MS.gene072853:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 3.2:-87565370 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.2:+87565414 | MS.gene072853:CDS |
| CTCAGCATCCCTTAGAGCCA+CGG | 0.641954 | 3.2:-87565713 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.2:+87566781 | MS.gene072853:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.2:+87566514 | MS.gene072853:CDS |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3.2:+87565228 | MS.gene072853:CDS |
| TCGCTGCAGAGAACTGGAGA+GGG | 0.653793 | 3.2:+87565541 | MS.gene072853:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 3.2:-87566920 | None:intergenic |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.656829 | 3.2:-87565011 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.2:+87566746 | MS.gene072853:CDS |
| TGCGAATGTTAAGCAACTGG+TGG | 0.658886 | 3.2:+87565342 | MS.gene072853:CDS |
| AAGGCTCCCATCCAAGCAGG+AGG | 0.676037 | 3.2:-87566962 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.2:+87565423 | MS.gene072853:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.2:-87565109 | None:intergenic |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.2:+87565566 | MS.gene072853:CDS |
| ACTAATGGTGGTGATAGTGG+TGG | 0.697741 | 3.2:+87566839 | MS.gene072853:CDS |
| TTAGAATACCTGTTATCACA+AGG | 0.699616 | 3.2:-87564934 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.712596 | 3.2:+87565195 | MS.gene072853:CDS |
| GAAGGCAGCTTGGACTAAGG+CGG | 0.713400 | 3.2:+87565660 | MS.gene072853:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.2:-87565087 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.2:-87565089 | None:intergenic |
| TGATTGGAGTGTCTATCATG+CGG | 0.778717 | 3.2:-87565160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTATACTTTAATAT+TGG | + | chr3.2:87566382-87566401 | MS.gene072853:intron | 10.0% |
| !! | CATTTGGTTAAAAATTAAAA+GGG | - | chr3.2:87566031-87566050 | None:intergenic | 15.0% |
| !! | TCATTTGGTTAAAAATTAAA+AGG | - | chr3.2:87566032-87566051 | None:intergenic | 15.0% |
| !!! | AGTTTCATTTTTTAAACAAT+TGG | + | chr3.2:87566222-87566241 | MS.gene072853:intron | 15.0% |
| !!! | ATATTTTAAAGACCAATTAA+AGG | + | chr3.2:87566108-87566127 | MS.gene072853:intron | 15.0% |
| !!! | AATTCTCTATAAAGCTTTAA+TGG | - | chr3.2:87566279-87566298 | None:intergenic | 20.0% |
| !!! | ACAATTTGATATGTTTTGAT+AGG | + | chr3.2:87565915-87565934 | MS.gene072853:intron | 20.0% |
| !!! | ATGTTTTCAATATTTAGTGT+TGG | + | chr3.2:87566409-87566428 | MS.gene072853:intron | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | + | chr3.2:87566191-87566210 | MS.gene072853:intron | 20.0% |
| ! | AAAGTTGTGTATCCTTTAAT+TGG | - | chr3.2:87566123-87566142 | None:intergenic | 25.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr3.2:87565179-87565198 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr3.2:87566824-87566843 | MS.gene072853:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | + | chr3.2:87565376-87565395 | MS.gene072853:CDS | 25.0% |
| ! | CTTTAATGGTGAAAAAAAAC+AGG | - | chr3.2:87566265-87566284 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | + | chr3.2:87565375-87565394 | MS.gene072853:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr3.2:87566824-87566843 | None:intergenic | 25.0% |
| ! | TTTATTGATACTTATCACCA+AGG | - | chr3.2:87566318-87566337 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | + | chr3.2:87566298-87566317 | MS.gene072853:intron | 25.0% |
| !!! | TTTTTTGGTGATTGAAACTT+TGG | + | chr3.2:87566462-87566481 | MS.gene072853:intron | 25.0% |
| AGGTGTAGAAGATTAATGAT+AGG | + | chr3.2:87566077-87566096 | MS.gene072853:intron | 30.0% | |
| ATCACTGTGATTAAAGTTGT+TGG | + | chr3.2:87565945-87565964 | MS.gene072853:intron | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | + | chr3.2:87566827-87566846 | MS.gene072853:CDS | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | + | chr3.2:87565810-87565829 | MS.gene072853:CDS | 30.0% | |
| CTTAGTTTCATATTGAACAC+TGG | - | chr3.2:87565812-87565831 | None:intergenic | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | + | chr3.2:87566634-87566653 | MS.gene072853:CDS | 30.0% | |
| TTAGAATACCTGTTATCACA+AGG | - | chr3.2:87564937-87564956 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr3.2:87566816-87566835 | MS.gene072853:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.2:87566743-87566762 | MS.gene072853:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | chr3.2:87565181-87565200 | MS.gene072853:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.2:87566746-87566765 | MS.gene072853:CDS | 30.0% |
| ! | GCAATTCTATTTTACTAGCT+AGG | + | chr3.2:87565882-87565901 | MS.gene072853:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | + | chr3.2:87565304-87565323 | MS.gene072853:CDS | 30.0% |
| !!! | GTACTACTGAATCACTTTTT+TGG | + | chr3.2:87566447-87566466 | MS.gene072853:intron | 30.0% |
| AAACAACTACACTGCTGTAA+GGG | + | chr3.2:87566724-87566743 | MS.gene072853:CDS | 35.0% | |
| ACTCTTGATCAATGGACAAT+AGG | + | chr3.2:87566057-87566076 | MS.gene072853:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr3.2:87566541-87566560 | MS.gene072853:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | - | chr3.2:87565149-87565168 | None:intergenic | 35.0% | |
| ATTGAAACTTTGGATGGTGT+AGG | + | chr3.2:87566472-87566491 | MS.gene072853:intron | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | - | chr3.2:87565068-87565087 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.2:87565451-87565470 | MS.gene072853:CDS | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | + | chr3.2:87564966-87564985 | MS.gene072853:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr3.2:87565135-87565154 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | - | chr3.2:87565373-87565392 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | + | chr3.2:87564926-87564945 | MS.gene072853:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | - | chr3.2:87566926-87566945 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | + | chr3.2:87565194-87565213 | MS.gene072853:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | + | chr3.2:87564977-87564996 | MS.gene072853:CDS | 35.0% |
| ! | TTAAGGGCTTTTCTCAGATA+AGG | - | chr3.2:87566984-87567003 | None:intergenic | 35.0% |
| ! | TTGGTGATTGAAACTTTGGA+TGG | + | chr3.2:87566466-87566485 | MS.gene072853:intron | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr3.2:87565464-87565483 | MS.gene072853:CDS | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | + | chr3.2:87565566-87565585 | MS.gene072853:CDS | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | - | chr3.2:87565044-87565063 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87566882-87566901 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.2:87566701-87566720 | MS.gene072853:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | + | chr3.2:87565734-87565753 | MS.gene072853:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87566881-87566900 | MS.gene072853:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr3.2:87566642-87566661 | MS.gene072853:CDS | 40.0% | |
| CAATGCGAATGTTAAGCAAC+TGG | + | chr3.2:87565339-87565358 | MS.gene072853:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | + | chr3.2:87565193-87565212 | MS.gene072853:CDS | 40.0% | |
| GAAACAACTACACTGCTGTA+AGG | + | chr3.2:87566723-87566742 | MS.gene072853:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.2:87566781-87566800 | MS.gene072853:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr3.2:87566641-87566660 | MS.gene072853:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | + | chr3.2:87566514-87566533 | MS.gene072853:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | + | chr3.2:87566490-87566509 | MS.gene072853:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | + | chr3.2:87565579-87565598 | MS.gene072853:CDS | 40.0% | |
| TAAGACTGTCCATGAGCAAA+CGG | + | chr3.2:87566931-87566950 | MS.gene072853:CDS | 40.0% | |
| TGAGTCACACTCTTGATCAA+TGG | + | chr3.2:87566049-87566068 | MS.gene072853:intron | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | + | chr3.2:87566640-87566659 | MS.gene072853:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | - | chr3.2:87566923-87566942 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | + | chr3.2:87566489-87566508 | MS.gene072853:intron | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | + | chr3.2:87565195-87565214 | MS.gene072853:CDS | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | - | chr3.2:87565031-87565050 | None:intergenic | 40.0% |
| ! | AGTGGTGGTGAAAAAACTGA+AGG | + | chr3.2:87566854-87566873 | MS.gene072853:CDS | 40.0% |
| ! | GATCAAGAGTGTGACTCATT+TGG | - | chr3.2:87566047-87566066 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+CGG | - | chr3.2:87565163-87565182 | None:intergenic | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | + | chr3.2:87565642-87565661 | MS.gene072853:CDS | 40.0% |
| !! | ATTGAACACTGGCTTTGCTA+AGG | - | chr3.2:87565801-87565820 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | + | chr3.2:87565469-87565488 | MS.gene072853:CDS | 40.0% |
| !! | GAAAAAACTGAAGGTGCCAT+GGG | + | chr3.2:87566863-87566882 | MS.gene072853:CDS | 40.0% |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | + | chr3.2:87565600-87565619 | MS.gene072853:CDS | 40.0% |
| !! | TGAAAAAACTGAAGGTGCCA+TGG | + | chr3.2:87566862-87566881 | MS.gene072853:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+GGG | + | chr3.2:87566932-87566951 | MS.gene072853:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr3.2:87565092-87565111 | None:intergenic | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | + | chr3.2:87565721-87565740 | MS.gene072853:CDS | 45.0% | |
| GGGACTTTATCGTGTAGCAA+AGG | + | chr3.2:87564901-87564920 | MS.gene072853:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr3.2:87565442-87565461 | MS.gene072853:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87566547-87566566 | MS.gene072853:CDS | 45.0% | |
| TGCGAATGTTAAGCAACTGG+TGG | + | chr3.2:87565342-87565361 | MS.gene072853:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | + | chr3.2:87565535-87565554 | MS.gene072853:CDS | 45.0% |
| ! | TGGACTAATGGTGGTGATAG+TGG | + | chr3.2:87566836-87566855 | MS.gene072853:CDS | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | + | chr3.2:87565393-87565412 | MS.gene072853:CDS | 45.0% |
| !! | ACTAATGGTGGTGATAGTGG+TGG | + | chr3.2:87566839-87566858 | MS.gene072853:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | - | chr3.2:87565079-87565098 | None:intergenic | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | - | chr3.2:87565024-87565043 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr3.2:87566956-87566975 | MS.gene072853:CDS | 50.0% | |
| ATTAATGCCGAGGCAGTACG+CGG | + | chr3.2:87566791-87566810 | MS.gene072853:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | + | chr3.2:87566657-87566676 | MS.gene072853:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr3.2:87565112-87565131 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | - | chr3.2:87565242-87565261 | None:intergenic | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | + | chr3.2:87565657-87565676 | MS.gene072853:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr3.2:87565423-87565442 | MS.gene072853:CDS | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | + | chr3.2:87565609-87565628 | MS.gene072853:CDS | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | - | chr3.2:87565090-87565109 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr3.2:87565414-87565433 | MS.gene072853:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr3.2:87565091-87565110 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr3.2:87566668-87566687 | MS.gene072853:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr3.2:87565413-87565432 | MS.gene072853:CDS | 50.0% | |
| TGGCTAAGAAGAAGGCAGCT+TGG | + | chr3.2:87565650-87565669 | MS.gene072853:CDS | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | + | chr3.2:87565244-87565263 | MS.gene072853:CDS | 50.0% |
| ! | ACTTGCTGCTTCCATGACGA+TGG | + | chr3.2:87565228-87565247 | MS.gene072853:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | + | chr3.2:87566568-87566587 | MS.gene072853:CDS | 50.0% |
| AACTGGAGAGGGTGACAAGG+AGG | + | chr3.2:87565552-87565571 | MS.gene072853:CDS | 55.0% | |
| AAGACGGAGCAGGATTGACC+GGG | - | chr3.2:87564998-87565017 | None:intergenic | 55.0% | |
| ACTGGAGAGGGTGACAAGGA+GGG | + | chr3.2:87565553-87565572 | MS.gene072853:CDS | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | - | chr3.2:87564999-87565018 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr3.2:87566955-87566974 | MS.gene072853:CDS | 55.0% | |
| CTCAGCATCCCTTAGAGCCA+CGG | - | chr3.2:87565716-87565735 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | + | chr3.2:87565085-87565104 | MS.gene072853:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | + | chr3.2:87565660-87565679 | MS.gene072853:CDS | 55.0% | |
| GAGAACTGGAGAGGGTGACA+AGG | + | chr3.2:87565549-87565568 | MS.gene072853:CDS | 55.0% | |
| GATAAGGCTCCCATCCAAGC+AGG | - | chr3.2:87566968-87566987 | None:intergenic | 55.0% | |
| GCAACATGCCCGTTTGCTCA+TGG | - | chr3.2:87566943-87566962 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | + | chr3.2:87566656-87566675 | MS.gene072853:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+TGG | + | chr3.2:87565630-87565649 | MS.gene072853:CDS | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | + | chr3.2:87565690-87565709 | MS.gene072853:CDS | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | - | chr3.2:87565014-87565033 | None:intergenic | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | + | chr3.2:87565612-87565631 | MS.gene072853:CDS | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | + | chr3.2:87565541-87565560 | MS.gene072853:CDS | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | + | chr3.2:87565234-87565253 | MS.gene072853:CDS | 55.0% | |
| TTCGCTGCAGAGAACTGGAG+AGG | + | chr3.2:87565540-87565559 | MS.gene072853:CDS | 55.0% | |
| ! | AAGCAACTGGTGGATGTGCC+TGG | + | chr3.2:87565352-87565371 | MS.gene072853:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | + | chr3.2:87565231-87565250 | MS.gene072853:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr3.2:87565105-87565124 | MS.gene072853:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | + | chr3.2:87565705-87565724 | MS.gene072853:CDS | 55.0% |
| AAGGCTCCCATCCAAGCAGG+AGG | - | chr3.2:87566965-87566984 | None:intergenic | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | + | chr3.2:87565666-87565685 | MS.gene072853:CDS | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | + | chr3.2:87565696-87565715 | MS.gene072853:CDS | 60.0% | |
| CGGTCAATCCTGCTCCGTCT+TGG | + | chr3.2:87564997-87565016 | MS.gene072853:CDS | 60.0% | |
| CTCAAGTCCGCGTACTGCCT+CGG | - | chr3.2:87566801-87566820 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | + | chr3.2:87565009-87565028 | MS.gene072853:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | + | chr3.2:87565681-87565700 | MS.gene072853:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | - | chr3.2:87565008-87565027 | None:intergenic | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | + | chr3.2:87565669-87565688 | MS.gene072853:CDS | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | + | chr3.2:87565704-87565723 | MS.gene072853:CDS | 60.0% |
| CGGGCATGTTGCCTCCTGCT+TGG | + | chr3.2:87566951-87566970 | MS.gene072853:CDS | 65.0% | |
| GAGAGAGGCTGAAGTGGCGG+AGG | + | chr3.2:87565615-87565634 | MS.gene072853:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87564899 | 87567003 | 87564899 | ID=MS.gene072853 |
| chr3.2 | mRNA | 87564899 | 87567003 | 87564899 | ID=MS.gene072853.t1;Parent=MS.gene072853 |
| chr3.2 | exon | 87564899 | 87565831 | 87564899 | ID=MS.gene072853.t1.exon1;Parent=MS.gene072853.t1 |
| chr3.2 | CDS | 87564899 | 87565831 | 87564899 | ID=cds.MS.gene072853.t1;Parent=MS.gene072853.t1 |
| chr3.2 | exon | 87566494 | 87567003 | 87566494 | ID=MS.gene072853.t1.exon2;Parent=MS.gene072853.t1 |
| chr3.2 | CDS | 87566494 | 87567003 | 87566494 | ID=cds.MS.gene072853.t1;Parent=MS.gene072853.t1 |
| Gene Sequence |
| Protein sequence |
