Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051839.t1 | XP_013468625.1 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 3.90E-184 | 654.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051839.t1 | D2XNQ8 | 88.5 | 478 | 51 | 1 | 1 | 474 | 1 | 478 | 1.3e-175 | 617.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051839.t1 | A0A072VLE3 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 2.8e-184 | 654.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051839 | MS.gene051841 | 0.987577 | 9.19E-171 | -1.69E-46 |
| MS.gene051839 | MS.gene24858 | 0.959955 | 5.15E-118 | -1.69E-46 |
| MS.gene051839 | MS.gene24860 | 0.961642 | 6.13E-120 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051839.t1 | MTR_1g073400 | 96.835 | 474 | 15 | 0 | 1 | 474 | 1 | 474 | 0.0 | 942 |
| MS.gene051839.t1 | MTR_3g106480 | 90.795 | 478 | 40 | 1 | 1 | 474 | 1 | 478 | 0.0 | 891 |
| MS.gene051839.t1 | MTR_1g115145 | 93.528 | 479 | 20 | 4 | 1 | 474 | 1 | 473 | 0.0 | 877 |
| MS.gene051839.t1 | MTR_1g071130 | 90.105 | 475 | 20 | 2 | 1 | 474 | 1 | 449 | 0.0 | 867 |
| MS.gene051839.t1 | MTR_3g106485 | 91.350 | 474 | 41 | 0 | 1 | 474 | 1 | 474 | 0.0 | 864 |
| MS.gene051839.t1 | MTR_3g106420 | 90.795 | 478 | 40 | 1 | 1 | 474 | 3 | 480 | 0.0 | 862 |
| MS.gene051839.t1 | MTR_1g083190 | 89.662 | 474 | 45 | 1 | 1 | 474 | 3 | 472 | 0.0 | 837 |
| MS.gene051839.t1 | MTR_3g106430 | 90.909 | 473 | 43 | 0 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene051839.t1 | MTR_3g106470 | 79.874 | 477 | 36 | 3 | 1 | 473 | 32 | 452 | 0.0 | 723 |
| MS.gene051839.t1 | MTR_8g063830 | 79.741 | 464 | 51 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene051839.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.24e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051839.t1 | AT5G25260 | 74.684 | 474 | 104 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene051839.t1 | AT5G25250 | 75.532 | 470 | 103 | 2 | 1 | 469 | 1 | 459 | 0.0 | 728 |
| MS.gene051839.t1 | AT5G64870 | 71.822 | 472 | 118 | 3 | 2 | 469 | 3 | 463 | 0.0 | 657 |
Find 114 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.2:-6798847 | MS.gene051839:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.2:-6797838 | MS.gene051839:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.2:-6798519 | MS.gene051839:CDS |
| TGGAATAACCGAAGGTTCTA+TGG | 0.272931 | 8.2:-6797804 | MS.gene051839:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.2:-6797911 | MS.gene051839:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.2:-6798846 | MS.gene051839:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.2:-6798759 | MS.gene051839:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.2:+6797833 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.2:-6799138 | MS.gene051839:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.2:-6797931 | MS.gene051839:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.2:-6798165 | MS.gene051839:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.2:-6797711 | MS.gene051839:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.2:-6798657 | MS.gene051839:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.2:-6798919 | MS.gene051839:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.2:-6797830 | MS.gene051839:CDS |
| CAACGCCAATGTTAAGCAAT+TGG | 0.387479 | 8.2:-6798884 | MS.gene051839:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.2:+6799272 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.2:+6799278 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.2:-6799297 | MS.gene051839:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.2:+6799100 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.2:-6798918 | MS.gene051839:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.2:+6797796 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.2:-6799257 | MS.gene051839:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.2:-6799332 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.2:-6797998 | MS.gene051839:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.474006 | 8.2:-6797734 | MS.gene051839:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.2:-6798113 | MS.gene051839:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.2:+6799088 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.2:-6798566 | MS.gene051839:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.2:+6798978 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.2:-6798693 | MS.gene051839:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.2:-6798518 | MS.gene051839:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.2:-6797715 | MS.gene051839:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.2:-6798810 | MS.gene051839:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.2:-6798989 | MS.gene051839:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.2:-6798772 | MS.gene051839:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.2:-6798688 | MS.gene051839:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.2:-6798644 | MS.gene051839:CDS |
| CGCCAATGTTAAGCAATTGG+TGG | 0.519130 | 8.2:-6798881 | MS.gene051839:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.2:-6798758 | MS.gene051839:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 8.2:+6797726 | None:intergenic |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.2:-6799042 | MS.gene051839:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.2:-6797710 | MS.gene051839:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.2:-6797785 | MS.gene051839:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.2:-6798871 | MS.gene051839:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.2:-6798542 | MS.gene051839:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.2:-6797827 | MS.gene051839:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.2:-6797891 | MS.gene051839:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.2:-6798670 | MS.gene051839:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.2:-6798554 | MS.gene051839:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.2:-6798593 | MS.gene051839:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.2:-6799291 | MS.gene051839:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.2:-6799214 | MS.gene051839:CDS |
| ATCCACCAATTGCTTAACAT+TGG | 0.549805 | 8.2:+6798879 | None:intergenic |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.2:+6797701 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.2:+6799296 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.2:-6798608 | MS.gene051839:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.2:-6798164 | MS.gene051839:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.2:+6799135 | None:intergenic |
| AGTATTTGGACTAATGGAGG+TGG | 0.568629 | 8.2:-6797824 | MS.gene051839:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.2:-6797953 | MS.gene051839:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.2:-6798995 | MS.gene051839:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.570732 | 8.2:-6797803 | MS.gene051839:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.2:-6798173 | MS.gene051839:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.2:+6799195 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.2:+6799228 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.2:+6799202 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.2:-6797792 | MS.gene051839:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.2:-6798086 | MS.gene051839:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.2:-6797986 | MS.gene051839:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.2:+6799091 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.2:-6797930 | MS.gene051839:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.2:+6799064 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.2:-6798671 | MS.gene051839:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.2:-6798614 | MS.gene051839:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.2:-6798830 | MS.gene051839:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.2:+6799131 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.2:+6799065 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.2:-6798107 | MS.gene051839:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.2:+6799182 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.2:-6799030 | MS.gene051839:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.2:+6799289 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.2:-6798489 | MS.gene051839:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.2:-6798754 | MS.gene051839:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.2:-6798502 | MS.gene051839:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.2:-6798781 | MS.gene051839:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.2:-6798669 | MS.gene051839:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.2:+6799212 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.2:-6798692 | MS.gene051839:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.2:-6799331 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.2:+6798853 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.2:-6798809 | MS.gene051839:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.2:+6799147 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.2:-6797873 | MS.gene051839:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.2:-6798674 | MS.gene051839:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.2:-6798497 | MS.gene051839:CDS |
| TGGACAGTCTTAAAGAGAGG+TGG | 0.649808 | 8.2:+6797746 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.2:-6798413 | MS.gene051839:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.2:-6799055 | MS.gene051839:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.2:-6797908 | MS.gene051839:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.2:-6798573 | MS.gene051839:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.2:+6799114 | None:intergenic |
| AATGGAGGTGGAATAACCGA+AGG | 0.661598 | 8.2:-6797812 | MS.gene051839:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.2:-6798527 | MS.gene051839:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.2:+6797704 | None:intergenic |
| TCATGGACAGTCTTAAAGAG+AGG | 0.674719 | 8.2:+6797743 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.2:-6798800 | MS.gene051839:CDS |
| ATTAATGCTGAGGCAGTACG+CGG | 0.685872 | 8.2:-6797863 | MS.gene051839:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.2:+6799063 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.2:-6798563 | MS.gene051839:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.2:-6798578 | MS.gene051839:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.2:+6799229 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.2:+6797919 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.2:+6798995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.2:6798799-6798818 | MS.gene051839:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.2:6798157-6798176 | MS.gene051839:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr8.2:6798686-6798705 | MS.gene051839:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.2:6798156-6798175 | MS.gene051839:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.2:6798755-6798774 | MS.gene051839:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.2:6799173-6799192 | MS.gene051839:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.2:6799173-6799192 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.2:6797918-6797937 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.2:6799165-6799184 | MS.gene051839:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.2:6798811-6798830 | MS.gene051839:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.2:6799176-6799195 | MS.gene051839:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.2:6798774-6798793 | MS.gene051839:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.2:6798590-6798609 | MS.gene051839:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.2:6798153-6798172 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.2:6797746-6797765 | MS.gene051839:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.2:6798621-6798640 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.2:6799092-6799111 | MS.gene051839:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.2:6799095-6799114 | MS.gene051839:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.2:6798245-6798264 | MS.gene051839:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.2:6797734-6797753 | None:intergenic | 35.0% | |
| ATCCACCAATTGCTTAACAT+TGG | + | chr8.2:6798127-6798146 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.2:6797941-6797960 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.2:6798991-6799010 | MS.gene051839:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.2:6797942-6797961 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.2:6798983-6799002 | MS.gene051839:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.2:6797948-6797967 | MS.gene051839:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.2:6797915-6797934 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.2:6797943-6797962 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.2:6799210-6799229 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.2:6797757-6797776 | MS.gene051839:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.2:6797848-6797867 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.2:6798610-6798629 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.2:6798244-6798263 | MS.gene051839:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | + | chr8.2:6799321-6799340 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.2:6798085-6798104 | MS.gene051839:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.2:6798084-6798103 | MS.gene051839:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.2:6798380-6798399 | MS.gene051839:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.2:6798815-6798834 | MS.gene051839:CDS | 35.0% |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.2:6798890-6798909 | MS.gene051839:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.2:6799211-6799230 | MS.gene051839:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.2:6799050-6799069 | MS.gene051839:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+TGG | - | chr8.2:6799179-6799198 | MS.gene051839:CDS | 40.0% | |
| CAACGCCAATGTTAAGCAAT+TGG | - | chr8.2:6798119-6798138 | MS.gene051839:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.2:6799087-6799106 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.2:6798311-6798330 | MS.gene051839:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.2:6799130-6799149 | MS.gene051839:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.2:6798990-6799009 | MS.gene051839:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.2:6798231-6798250 | MS.gene051839:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.2:6799200-6799219 | MS.gene051839:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.2:6798821-6798840 | MS.gene051839:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.2:6798359-6798378 | MS.gene051839:intron | 40.0% | |
| TCATGGACAGTCTTAAAGAG+AGG | + | chr8.2:6799263-6799282 | None:intergenic | 40.0% | |
| TGGAATAACCGAAGGTTCTA+TGG | - | chr8.2:6799199-6799218 | MS.gene051839:CDS | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.2:6798024-6798043 | MS.gene051839:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.2:6797811-6797830 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.2:6798249-6798268 | MS.gene051839:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.2:6798028-6798047 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.2:6799073-6799092 | MS.gene051839:CDS | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr8.2:6799269-6799288 | MS.gene051839:CDS | 45.0% | |
| AATGGAGGTGGAATAACCGA+AGG | - | chr8.2:6799191-6799210 | MS.gene051839:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.2:6797875-6797894 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.2:6797824-6797843 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.2:6799218-6799237 | MS.gene051839:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+CGG | - | chr8.2:6799140-6799159 | MS.gene051839:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.2:6797961-6797980 | MS.gene051839:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.2:6798310-6798329 | MS.gene051839:intron | 45.0% | |
| CGCCAATGTTAAGCAATTGG+TGG | - | chr8.2:6798122-6798141 | MS.gene051839:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.2:6797973-6797992 | MS.gene051839:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.2:6798389-6798408 | MS.gene051839:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.2:6799005-6799024 | MS.gene051839:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.2:6798839-6798858 | MS.gene051839:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.2:6799017-6799036 | MS.gene051839:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.2:6798222-6798241 | MS.gene051839:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.2:6797706-6797725 | MS.gene051839:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.2:6798896-6798915 | MS.gene051839:CDS | 45.0% | |
| TGGACAGTCTTAAAGAGAGG+TGG | + | chr8.2:6799260-6799279 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.2:6799112-6799131 | MS.gene051839:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.2:6798838-6798857 | MS.gene051839:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.2:6798346-6798365 | MS.gene051839:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.2:6797710-6797729 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.2:6798425-6798444 | MS.gene051839:CDS | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.2:6798173-6798192 | MS.gene051839:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.2:6798485-6798504 | MS.gene051839:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.2:6798637-6798656 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.2:6797859-6797878 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.2:6797778-6797797 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.2:6797777-6797796 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.2:6797804-6797823 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.2:6798514-6798533 | MS.gene051839:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.2:6799293-6799312 | MS.gene051839:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.2:6797906-6797925 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.2:6798501-6798520 | MS.gene051839:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.2:6798830-6798849 | MS.gene051839:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.2:6797865-6797884 | MS.gene051839:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.2:6799072-6799091 | MS.gene051839:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.2:6798203-6798222 | MS.gene051839:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.2:6799305-6799324 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr8.2:6799280-6799299 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.2:6798194-6798213 | MS.gene051839:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.2:6797712-6797731 | MS.gene051839:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.2:6798014-6798033 | MS.gene051839:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.2:6798193-6798212 | MS.gene051839:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.2:6798132-6798151 | MS.gene051839:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.2:6798484-6798503 | MS.gene051839:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.2:6798437-6798456 | MS.gene051839:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.2:6798917-6798936 | MS.gene051839:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.2:6797839-6797858 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.2:6798395-6798414 | MS.gene051839:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.2:6799302-6799321 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.2:6798476-6798495 | MS.gene051839:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.2:6799292-6799311 | MS.gene051839:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.2:6798334-6798353 | MS.gene051839:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.2:6797892-6797911 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.2:6797728-6797747 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.2:6798333-6798352 | MS.gene051839:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.2:6798506-6798525 | MS.gene051839:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.2:6797871-6797890 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.2:6798410-6798429 | MS.gene051839:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.2:6798315-6798334 | MS.gene051839:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.2:6798430-6798449 | MS.gene051839:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.2:6797717-6797736 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.2:6798449-6798468 | MS.gene051839:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.2:6798440-6798459 | MS.gene051839:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.2:6797794-6797813 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.2:6797789-6797808 | MS.gene051839:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.2:6799288-6799307 | MS.gene051839:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.2:6798011-6798030 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.2:6798008-6798027 | MS.gene051839:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.2:6798329-6798348 | MS.gene051839:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.2:6798461-6798480 | MS.gene051839:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.2:6798332-6798351 | MS.gene051839:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6797685 | 6799340 | 6797685 | ID=MS.gene051839 |
| chr8.2 | mRNA | 6797685 | 6799340 | 6797685 | ID=MS.gene051839.t1;Parent=MS.gene051839 |
| chr8.2 | exon | 6798414 | 6799340 | 6798414 | ID=MS.gene051839.t1.exon1;Parent=MS.gene051839.t1 |
| chr8.2 | CDS | 6798414 | 6799340 | 6798414 | ID=cds.MS.gene051839.t1;Parent=MS.gene051839.t1 |
| chr8.2 | exon | 6797685 | 6798182 | 6797685 | ID=MS.gene051839.t1.exon2;Parent=MS.gene051839.t1 |
| chr8.2 | CDS | 6797685 | 6798182 | 6797685 | ID=cds.MS.gene051839.t1;Parent=MS.gene051839.t1 |
| Gene Sequence |
| Protein sequence |
