Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40041.t1 | RHN80248.1 | 97.1 | 478 | 10 | 1 | 1 | 478 | 1 | 474 | 2.80E-182 | 648.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40041.t1 | D2XNQ8 | 91.4 | 478 | 41 | 0 | 1 | 478 | 1 | 478 | 1.6e-178 | 627.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40041.t1 | A0A072VLE3 | 96.2 | 478 | 14 | 1 | 1 | 478 | 1 | 474 | 2.0e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054651 | MS.gene40041 | 0.809382 | 1.95E-50 | -1.69E-46 |
| MS.gene055316 | MS.gene40041 | 0.808392 | 3.17E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene40041 | 0.801752 | 7.76E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40041.t1 | MTR_1g073400 | 96.862 | 478 | 11 | 1 | 1 | 478 | 1 | 474 | 0.0 | 941 |
| MS.gene40041.t1 | MTR_3g106480 | 92.050 | 478 | 38 | 0 | 1 | 478 | 1 | 478 | 0.0 | 906 |
| MS.gene40041.t1 | MTR_1g115145 | 94.363 | 479 | 20 | 3 | 1 | 478 | 1 | 473 | 0.0 | 889 |
| MS.gene40041.t1 | MTR_1g071130 | 91.632 | 478 | 11 | 2 | 1 | 478 | 1 | 449 | 0.0 | 885 |
| MS.gene40041.t1 | MTR_3g106420 | 91.423 | 478 | 41 | 0 | 1 | 478 | 3 | 480 | 0.0 | 874 |
| MS.gene40041.t1 | MTR_3g106485 | 92.050 | 478 | 34 | 2 | 1 | 478 | 1 | 474 | 0.0 | 873 |
| MS.gene40041.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 1 | 477 | 1 | 473 | 0.0 | 836 |
| MS.gene40041.t1 | MTR_1g083190 | 88.703 | 478 | 46 | 1 | 1 | 478 | 3 | 472 | 0.0 | 836 |
| MS.gene40041.t1 | MTR_3g106470 | 80.713 | 477 | 36 | 2 | 1 | 477 | 32 | 452 | 0.0 | 737 |
| MS.gene40041.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 672 |
| MS.gene40041.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 5.86e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40041.t1 | AT5G25260 | 75.527 | 474 | 104 | 2 | 1 | 474 | 1 | 462 | 0.0 | 740 |
| MS.gene40041.t1 | AT5G25250 | 75.476 | 473 | 102 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| MS.gene40041.t1 | AT5G64870 | 71.822 | 472 | 122 | 1 | 2 | 473 | 3 | 463 | 0.0 | 663 |
Find 115 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.4:+59963492 | MS.gene40041:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.4:+59964901 | MS.gene40041:CDS |
| CGGAATAACGGAAGGTTCTA+TGG | 0.257659 | 1.4:+59964947 | MS.gene40041:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.4:+59963820 | MS.gene40041:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.4:+59964828 | MS.gene40041:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.4:+59963493 | MS.gene40041:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.4:+59963580 | MS.gene40041:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1.4:+59964574 | MS.gene40041:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.4:-59964906 | None:intergenic |
| CTTCCAGCTGTCTTCACAAT+TGG | 0.320095 | 1.4:+59963201 | MS.gene40041:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.4:+59963682 | MS.gene40041:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.4:+59965040 | MS.gene40041:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.4:-59963434 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.4:+59964909 | MS.gene40041:CDS |
| GAAATGACTACACAGCTCTA+AGG | 0.365727 | 1.4:+59964808 | MS.gene40041:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.4:+59963455 | MS.gene40041:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.4:+59963420 | MS.gene40041:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.4:+59963007 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.4:+59963221 | MS.gene40041:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.4:+59963082 | MS.gene40041:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.4:+59963421 | MS.gene40041:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.4:+59963042 | MS.gene40041:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.4:-59963061 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1.4:+59963773 | MS.gene40041:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.4:+59964626 | MS.gene40041:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.4:-59963251 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.4:+59963509 | MS.gene40041:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.4:+59965017 | MS.gene40041:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 1.4:-59963361 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.4:+59963529 | MS.gene40041:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1.4:+59963785 | MS.gene40041:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.4:+59963821 | MS.gene40041:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.4:+59965036 | MS.gene40041:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.4:+59963350 | MS.gene40041:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.4:+59963032 | MS.gene40041:CDS |
| GGACCAATTGTGAAGACAGC+TGG | 0.510498 | 1.4:-59963204 | None:intergenic |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.4:+59963695 | MS.gene40041:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.4:+59963567 | MS.gene40041:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.4:+59963297 | MS.gene40041:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.4:-59965025 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.4:+59965041 | MS.gene40041:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.4:+59963651 | MS.gene40041:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.4:+59963048 | MS.gene40041:CDS |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.526365 | 1.4:+59964966 | MS.gene40041:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.4:+59963468 | MS.gene40041:CDS |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.4:+59963646 | MS.gene40041:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.4:+59963797 | MS.gene40041:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.4:+59964912 | MS.gene40041:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.4:-59963050 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.4:+59964848 | MS.gene40041:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.4:-59963043 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.4:+59963746 | MS.gene40041:CDS |
| TGACAATGGAGGCGGAATAA+CGG | 0.546090 | 1.4:+59964935 | MS.gene40041:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1.4:+59964741 | MS.gene40041:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.4:+59963125 | MS.gene40041:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.4:-59965050 | None:intergenic |
| AATACACTTCTCAATGCACT+TGG | 0.557121 | 1.4:+59964786 | MS.gene40041:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.4:+59963731 | MS.gene40041:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1.4:+59964566 | MS.gene40041:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.4:+59963083 | MS.gene40041:CDS |
| AGGTTCTATGGGCATGAAAG+AGG | 0.562875 | 1.4:+59964959 | MS.gene40041:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.4:+59963458 | MS.gene40041:CDS |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.4:-59963847 | None:intergenic |
| GGAATAACGGAAGGTTCTAT+GGG | 0.567693 | 1.4:+59964948 | MS.gene40041:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.4:+59963344 | MS.gene40041:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.4:-59963144 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.4:-59963111 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.4:-59963137 | None:intergenic |
| AAATGACTACACAGCTCTAA+GGG | 0.574906 | 1.4:+59964809 | MS.gene40041:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.4:+59963850 | MS.gene40041:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1.4:+59964575 | MS.gene40041:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.4:+59963581 | MS.gene40041:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.4:+59964753 | MS.gene40041:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1.4:+59963766 | MS.gene40041:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.4:-59963248 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.4:+59963725 | MS.gene40041:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.4:+59963837 | MS.gene40041:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1.4:+59964742 | MS.gene40041:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.4:+59964632 | MS.gene40041:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.4:-59963157 | None:intergenic |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.4:+59964927 | MS.gene40041:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.4:+59964921 | MS.gene40041:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.4:+59963669 | MS.gene40041:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.4:+59963309 | MS.gene40041:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.4:+59963558 | MS.gene40041:CDS |
| AAGACAGCTGGAAGAACGAA+AGG | 0.619328 | 1.4:-59963192 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.4:+59963668 | MS.gene40041:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.4:-59963127 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.4:+59963530 | MS.gene40041:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.4:+59963310 | MS.gene40041:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.4:+59963647 | MS.gene40041:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1.4:+59964876 | MS.gene40041:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.4:-59963486 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.4:+59963008 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.4:+59963926 | MS.gene40041:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.4:+59963665 | MS.gene40041:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.4:+59963842 | MS.gene40041:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1.4:+59963761 | MS.gene40041:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.4:+59963284 | MS.gene40041:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.4:-59965005 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.4:+59964831 | MS.gene40041:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.4:-59965008 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.4:+59963812 | MS.gene40041:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.668536 | 1.4:+59964939 | MS.gene40041:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.4:-59965047 | None:intergenic |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1.4:+59963585 | MS.gene40041:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.4:+59964924 | MS.gene40041:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.4:-59963276 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.4:+59964866 | MS.gene40041:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.4:+59963539 | MS.gene40041:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.4:-59963225 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.4:-59963110 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.4:+59963311 | MS.gene40041:CDS |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.4:-59963344 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1.4:+59963776 | MS.gene40041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1.4:59963973-59963992 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1.4:59964025-59964044 | MS.gene40041:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.4:59963493-59963512 | MS.gene40041:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1.4:59964200-59964219 | MS.gene40041:intron | 15.0% |
| !! | TAATGTTAAAAAAATTGACA+AGG | - | chr1.4:59964456-59964475 | None:intergenic | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1.4:59964535-59964554 | MS.gene40041:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1.4:59964256-59964275 | MS.gene40041:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.4:59963492-59963511 | MS.gene40041:CDS | 20.0% |
| !! | TTAAAAAAATTGACAAGGTT+TGG | - | chr1.4:59964451-59964470 | None:intergenic | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1.4:59964142-59964161 | MS.gene40041:intron | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1.4:59964124-59964143 | MS.gene40041:intron | 20.0% |
| ! | AAAACAAAACGATTGACATA+TGG | + | chr1.4:59964378-59964397 | MS.gene40041:intron | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1.4:59964909-59964928 | MS.gene40041:CDS | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1.4:59964307-59964326 | None:intergenic | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1.4:59964389-59964408 | MS.gene40041:intron | 25.0% |
| ! | GAAGTAAAACATAACAAAGT+AGG | + | chr1.4:59964488-59964507 | MS.gene40041:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.4:59964909-59964928 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.4:59964901-59964920 | MS.gene40041:CDS | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1.4:59964314-59964333 | MS.gene40041:intron | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1.4:59964059-59964078 | MS.gene40041:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1.4:59964547-59964566 | MS.gene40041:intron | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.4:59963254-59963273 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1.4:59963957-59963976 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1.4:59964912-59964931 | MS.gene40041:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.4:59963083-59963102 | MS.gene40041:CDS | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1.4:59964308-59964327 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1.4:59964410-59964429 | MS.gene40041:intron | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.4:59963489-59963508 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.4:59963082-59963101 | MS.gene40041:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.4:59963437-59963456 | None:intergenic | 30.0% | |
| ! | AAAAATTGACAAGGTTTGGT+TGG | - | chr1.4:59964447-59964466 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.4:59964828-59964847 | MS.gene40041:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.4:59964831-59964850 | MS.gene40041:CDS | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1.4:59964557-59964576 | MS.gene40041:intron | 30.0% |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.4:59963421-59963440 | MS.gene40041:CDS | 35.0% | |
| AATACACTTCTCAATGCACT+TGG | + | chr1.4:59964786-59964805 | MS.gene40041:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.4:59964626-59964645 | MS.gene40041:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1.4:59964727-59964746 | MS.gene40041:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.4:59963420-59963439 | MS.gene40041:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.4:59963455-59963474 | MS.gene40041:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.4:59963647-59963666 | MS.gene40041:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.4:59964719-59964738 | MS.gene40041:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.4:59963284-59963303 | MS.gene40041:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.4:59963310-59963329 | MS.gene40041:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.4:59963279-59963298 | None:intergenic | 35.0% | |
| ! | AAATGACTACACAGCTCTAA+GGG | + | chr1.4:59964809-59964828 | MS.gene40041:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.4:59963184-59963203 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.4:59963946-59963965 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.4:59963926-59963945 | MS.gene40041:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1.4:59965069-59965088 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.4:59963716-59963735 | MS.gene40041:CDS | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1.4:59964551-59964570 | MS.gene40041:intron | 35.0% |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1.4:59964279-59964298 | MS.gene40041:intron | 40.0% | |
| AGCAAGTGCTATGTTTCGTT+TGG | + | chr1.4:59964353-59964372 | MS.gene40041:intron | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.4:59963311-59963330 | MS.gene40041:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.4:59963297-59963316 | MS.gene40041:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.4:59963646-59963665 | MS.gene40041:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.4:59963309-59963328 | MS.gene40041:CDS | 40.0% | |
| GAAATGACTACACAGCTCTA+AGG | + | chr1.4:59964808-59964827 | MS.gene40041:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.4:59963620-59963639 | MS.gene40041:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1.4:59964726-59964745 | MS.gene40041:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.4:59963567-59963586 | MS.gene40041:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.4:59963695-59963714 | MS.gene40041:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.4:59963251-59963270 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.4:59965011-59965030 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.4:59963458-59963477 | MS.gene40041:CDS | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1.4:59964575-59964594 | MS.gene40041:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1.4:59964566-59964585 | MS.gene40041:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1.4:59964574-59964593 | MS.gene40041:intron | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.4:59963093-59963112 | MS.gene40041:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.4:59963682-59963701 | MS.gene40041:CDS | 40.0% |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | + | chr1.4:59963360-59963379 | MS.gene40041:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.4:59963147-59963166 | None:intergenic | 40.0% |
| ! | GGAATAACGGAAGGTTCTAT+GGG | + | chr1.4:59964948-59964967 | MS.gene40041:CDS | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | - | chr1.4:59963364-59963383 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.4:59963509-59963528 | MS.gene40041:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.4:59963581-59963600 | MS.gene40041:CDS | 40.0% |
| AAGACAGCTGGAAGAACGAA+AGG | - | chr1.4:59963195-59963214 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1.4:59965017-59965036 | MS.gene40041:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | + | chr1.4:59964924-59964943 | MS.gene40041:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.4:59963160-59963179 | None:intergenic | 45.0% | |
| AGGGATCCACGATTTAGACT+TGG | - | chr1.4:59964288-59964307 | None:intergenic | 45.0% | |
| AGGTTCTATGGGCATGAAAG+AGG | + | chr1.4:59964959-59964978 | MS.gene40041:CDS | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1.4:59964742-59964761 | MS.gene40041:CDS | 45.0% | |
| CTTCCAGCTGTCTTCACAAT+TGG | + | chr1.4:59963201-59963220 | MS.gene40041:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.4:59963725-59963744 | MS.gene40041:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1.4:59964866-59964885 | MS.gene40041:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.4:59963558-59963577 | MS.gene40041:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.4:59964632-59964651 | MS.gene40041:CDS | 45.0% | |
| TGACAATGGAGGCGGAATAA+CGG | + | chr1.4:59964935-59964954 | MS.gene40041:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.4:59965008-59965027 | None:intergenic | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | + | chr1.4:59964921-59964940 | MS.gene40041:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1.4:59964848-59964867 | MS.gene40041:CDS | 45.0% | |
| ! | CGGAATAACGGAAGGTTCTA+TGG | + | chr1.4:59964947-59964966 | MS.gene40041:CDS | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1.4:59963761-59963780 | MS.gene40041:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.4:59963580-59963599 | MS.gene40041:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.4:59963821-59963840 | MS.gene40041:CDS | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1.4:59964117-59964136 | MS.gene40041:intron | 5.0% |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.4:59963114-59963133 | None:intergenic | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | + | chr1.4:59964927-59964946 | MS.gene40041:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.4:59963113-59963132 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.4:59963140-59963159 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.4:59963850-59963869 | MS.gene40041:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1.4:59964876-59964895 | MS.gene40041:CDS | 50.0% | |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1.4:59964966-59964985 | MS.gene40041:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.4:59965041-59965060 | MS.gene40041:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.4:59963850-59963869 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.4:59963228-59963247 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.4:59963539-59963558 | MS.gene40041:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1.4:59965053-59965072 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.4:59963064-59963083 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1.4:59965028-59965047 | None:intergenic | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1.4:59964741-59964760 | MS.gene40041:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.4:59963530-59963549 | MS.gene40041:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+TGG | - | chr1.4:59963207-59963226 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.4:59963746-59963765 | MS.gene40041:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1.4:59964753-59964772 | MS.gene40041:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.4:59963651-59963670 | MS.gene40041:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.4:59963042-59963061 | MS.gene40041:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.4:59963046-59963065 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.4:59963350-59963369 | MS.gene40041:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.4:59963529-59963548 | MS.gene40041:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.4:59963468-59963487 | MS.gene40041:CDS | 50.0% |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1.4:59964939-59964958 | MS.gene40041:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.4:59963820-59963839 | MS.gene40041:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1.4:59963773-59963792 | MS.gene40041:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.4:59963032-59963051 | MS.gene40041:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.4:59963175-59963194 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.4:59963585-59963604 | MS.gene40041:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.4:59963731-59963750 | MS.gene40041:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1.4:59965050-59965069 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.4:59963812-59963831 | MS.gene40041:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.4:59965040-59965059 | MS.gene40041:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.4:59963837-59963856 | MS.gene40041:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.4:59963669-59963688 | MS.gene40041:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.4:59963048-59963067 | MS.gene40041:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1.4:59963766-59963785 | MS.gene40041:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.4:59963053-59963072 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.4:59963785-59963804 | MS.gene40041:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1.4:59963776-59963795 | MS.gene40041:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.4:59963221-59963240 | MS.gene40041:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.4:59963130-59963149 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.4:59963125-59963144 | MS.gene40041:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1.4:59965036-59965055 | MS.gene40041:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.4:59963347-59963366 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.4:59963344-59963363 | MS.gene40041:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.4:59963665-59963684 | MS.gene40041:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.4:59963842-59963861 | MS.gene40041:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.4:59963797-59963816 | MS.gene40041:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.4:59963668-59963687 | MS.gene40041:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59963021 | 59965088 | 59963021 | ID=MS.gene40041 |
| chr1.4 | mRNA | 59963021 | 59965088 | 59963021 | ID=MS.gene40041.t1;Parent=MS.gene40041 |
| chr1.4 | exon | 59963021 | 59963947 | 59963021 | ID=MS.gene40041.t1.exon1;Parent=MS.gene40041.t1 |
| chr1.4 | CDS | 59963021 | 59963947 | 59963021 | ID=cds.MS.gene40041.t1;Parent=MS.gene40041.t1 |
| chr1.4 | exon | 59964579 | 59965088 | 59964579 | ID=MS.gene40041.t1.exon2;Parent=MS.gene40041.t1 |
| chr1.4 | CDS | 59964579 | 59965088 | 59964579 | ID=cds.MS.gene40041.t1;Parent=MS.gene40041.t1 |
| Gene Sequence |
| Protein sequence |
