Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012251.t1 | PNY01485.1 | 85.1 | 478 | 69 | 1 | 1 | 478 | 1 | 476 | 1.10E-183 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012251.t1 | D2XNQ8 | 88.7 | 478 | 54 | 0 | 1 | 478 | 1 | 478 | 2.1e-178 | 626.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012251.t1 | A0A2K3NEM2 | 85.1 | 478 | 69 | 1 | 1 | 478 | 1 | 476 | 8.3e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012251.t1 | MTR_3g106480 | 91.004 | 478 | 43 | 0 | 1 | 478 | 1 | 478 | 0.0 | 900 |
| MS.gene012251.t1 | MTR_1g115145 | 93.946 | 479 | 22 | 3 | 1 | 478 | 1 | 473 | 0.0 | 888 |
| MS.gene012251.t1 | MTR_1g073400 | 95.607 | 478 | 17 | 1 | 1 | 478 | 1 | 474 | 0.0 | 884 |
| MS.gene012251.t1 | MTR_1g071130 | 89.958 | 478 | 19 | 2 | 1 | 478 | 1 | 449 | 0.0 | 873 |
| MS.gene012251.t1 | MTR_3g106420 | 91.004 | 478 | 43 | 0 | 1 | 478 | 3 | 480 | 0.0 | 872 |
| MS.gene012251.t1 | MTR_3g106485 | 91.213 | 478 | 38 | 2 | 1 | 478 | 1 | 474 | 0.0 | 866 |
| MS.gene012251.t1 | MTR_1g083190 | 88.703 | 478 | 46 | 1 | 1 | 478 | 3 | 472 | 0.0 | 836 |
| MS.gene012251.t1 | MTR_3g106430 | 90.985 | 477 | 39 | 2 | 1 | 477 | 1 | 473 | 0.0 | 833 |
| MS.gene012251.t1 | MTR_3g106470 | 80.084 | 477 | 39 | 2 | 1 | 477 | 32 | 452 | 0.0 | 731 |
| MS.gene012251.t1 | MTR_8g063830 | 80.000 | 465 | 52 | 5 | 1 | 464 | 1 | 425 | 0.0 | 671 |
| MS.gene012251.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.37e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012251.t1 | AT5G25260 | 74.895 | 474 | 107 | 2 | 1 | 474 | 1 | 462 | 0.0 | 736 |
| MS.gene012251.t1 | AT5G25250 | 75.264 | 473 | 103 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| MS.gene012251.t1 | AT5G64870 | 71.822 | 472 | 122 | 1 | 2 | 473 | 3 | 463 | 0.0 | 661 |
Find 114 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.1:-6170716 | MS.gene012251:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.1:-6169707 | MS.gene012251:CDS |
| CGGAATAACCGAAGGTTCTA+TGG | 0.252432 | 8.1:-6169661 | MS.gene012251:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.1:-6170388 | MS.gene012251:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.1:-6169780 | MS.gene012251:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.1:-6170715 | MS.gene012251:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.1:-6170628 | MS.gene012251:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.1:+6169702 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.1:-6171007 | MS.gene012251:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.1:-6169800 | MS.gene012251:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.1:-6170034 | MS.gene012251:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.1:-6169568 | MS.gene012251:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.1:-6170526 | MS.gene012251:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.1:-6170788 | MS.gene012251:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.1:-6169699 | MS.gene012251:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.1:+6171141 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.1:+6171147 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.1:-6171166 | MS.gene012251:CDS |
| CAACGCGAATGTTAAGCAAT+TGG | 0.420451 | 8.1:-6170753 | MS.gene012251:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.1:+6170969 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.1:-6170787 | MS.gene012251:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.1:+6169653 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.1:-6171126 | MS.gene012251:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.1:-6171201 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.1:-6169867 | MS.gene012251:CDS |
| AACACTGTTCATGAGCAAAC+AGG | 0.461993 | 8.1:-6169591 | MS.gene012251:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.1:-6169982 | MS.gene012251:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.1:+6170957 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.1:-6170435 | MS.gene012251:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.1:+6170847 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.1:-6170562 | MS.gene012251:CDS |
| CGCGAATGTTAAGCAATTGG+TGG | 0.500388 | 8.1:-6170750 | MS.gene012251:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.1:-6170387 | MS.gene012251:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.1:-6169572 | MS.gene012251:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.1:-6170679 | MS.gene012251:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.1:-6170858 | MS.gene012251:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.1:-6170641 | MS.gene012251:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.1:-6170557 | MS.gene012251:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.1:-6170513 | MS.gene012251:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.1:-6170627 | MS.gene012251:CDS |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.1:-6170911 | MS.gene012251:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.1:-6169567 | MS.gene012251:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.1:-6169642 | MS.gene012251:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.1:-6170740 | MS.gene012251:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.1:-6170411 | MS.gene012251:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.1:-6169696 | MS.gene012251:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.1:-6169760 | MS.gene012251:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.1:-6170539 | MS.gene012251:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.1:-6170423 | MS.gene012251:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.1:-6170462 | MS.gene012251:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.1:-6171160 | MS.gene012251:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.1:-6171083 | MS.gene012251:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.1:+6169558 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.1:+6171165 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.1:-6170477 | MS.gene012251:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.1:-6170033 | MS.gene012251:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.1:+6171004 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.1:-6169822 | MS.gene012251:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.1:-6170864 | MS.gene012251:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.1:-6170042 | MS.gene012251:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.1:+6171064 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.1:+6171097 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.1:+6171071 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.1:-6169649 | MS.gene012251:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.578747 | 8.1:-6169660 | MS.gene012251:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.1:-6169955 | MS.gene012251:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.1:-6169855 | MS.gene012251:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.1:+6170960 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.1:-6169799 | MS.gene012251:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.1:+6170933 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.1:-6170540 | MS.gene012251:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.1:-6170483 | MS.gene012251:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.1:-6170699 | MS.gene012251:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.1:+6171000 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.1:+6170934 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.1:-6169976 | MS.gene012251:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.1:+6171051 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.1:-6170899 | MS.gene012251:CDS |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 8.1:-6169681 | MS.gene012251:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 8.1:-6169687 | MS.gene012251:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.1:+6171158 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.1:-6170358 | MS.gene012251:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.1:-6170623 | MS.gene012251:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.1:-6170371 | MS.gene012251:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.1:-6170650 | MS.gene012251:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.1:-6170538 | MS.gene012251:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.1:+6171081 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.1:-6170561 | MS.gene012251:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.1:-6171200 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.1:+6170722 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.1:-6170678 | MS.gene012251:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.1:+6171016 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.1:-6169742 | MS.gene012251:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.1:-6170543 | MS.gene012251:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.1:-6170366 | MS.gene012251:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.1:-6170282 | MS.gene012251:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.1:-6170924 | MS.gene012251:CDS |
| ATTAATGCTGAGGCAGTACG+TGG | 0.657117 | 8.1:-6169732 | MS.gene012251:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.1:-6169777 | MS.gene012251:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.1:-6170442 | MS.gene012251:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.1:+6170983 | None:intergenic |
| TGAACAGTGTTAAACAGTGG+TGG | 0.660448 | 8.1:+6169603 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.1:-6170396 | MS.gene012251:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.1:+6169561 | None:intergenic |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 8.1:-6169684 | MS.gene012251:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.1:-6170669 | MS.gene012251:CDS |
| AATGGAGGCGGAATAACCGA+AGG | 0.683343 | 8.1:-6169669 | MS.gene012251:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.1:+6170932 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.1:-6170432 | MS.gene012251:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.1:-6170447 | MS.gene012251:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.1:+6171098 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.1:+6169788 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.1:+6170864 | None:intergenic |
| TCATGAACAGTGTTAAACAG+TGG | 0.809386 | 8.1:+6169600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.1:6170656-6170675 | MS.gene012251:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.1:6170014-6170033 | MS.gene012251:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr8.1:6170543-6170562 | MS.gene012251:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.1:6170013-6170032 | MS.gene012251:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.1:6170612-6170631 | MS.gene012251:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.1:6171030-6171049 | MS.gene012251:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.1:6171030-6171049 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.1:6169775-6169794 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.1:6171022-6171041 | MS.gene012251:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.1:6170668-6170687 | MS.gene012251:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.1:6171033-6171052 | MS.gene012251:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.1:6170631-6170650 | MS.gene012251:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.1:6170447-6170466 | MS.gene012251:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.1:6170010-6170029 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.1:6169603-6169622 | MS.gene012251:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.1:6170478-6170497 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.1:6170949-6170968 | MS.gene012251:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.1:6170952-6170971 | MS.gene012251:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.1:6170102-6170121 | MS.gene012251:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.1:6169591-6169610 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.1:6169798-6169817 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.1:6170848-6170867 | MS.gene012251:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.1:6169799-6169818 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.1:6170840-6170859 | MS.gene012251:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.1:6169805-6169824 | MS.gene012251:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.1:6169772-6169791 | None:intergenic | 35.0% | |
| TCATGAACAGTGTTAAACAG+TGG | + | chr8.1:6171132-6171151 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.1:6169800-6169819 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.1:6171079-6171098 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.1:6169614-6169633 | MS.gene012251:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.1:6169705-6169724 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.1:6170467-6170486 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.1:6170101-6170120 | MS.gene012251:intron | 35.0% |
| ! | TTAAGCACTTTTGTCGGATA+AGG | + | chr8.1:6171190-6171209 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.1:6169942-6169961 | MS.gene012251:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.1:6169941-6169960 | MS.gene012251:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.1:6170237-6170256 | MS.gene012251:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.1:6170672-6170691 | MS.gene012251:CDS | 35.0% |
| AACACTGTTCATGAGCAAAC+AGG | - | chr8.1:6171138-6171157 | MS.gene012251:CDS | 40.0% | |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.1:6170747-6170766 | MS.gene012251:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.1:6171080-6171099 | MS.gene012251:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.1:6170907-6170926 | MS.gene012251:CDS | 40.0% | |
| CAACGCGAATGTTAAGCAAT+TGG | - | chr8.1:6169976-6169995 | MS.gene012251:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.1:6170944-6170963 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.1:6170168-6170187 | MS.gene012251:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.1:6170987-6171006 | MS.gene012251:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.1:6170847-6170866 | MS.gene012251:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.1:6170088-6170107 | MS.gene012251:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.1:6171069-6171088 | MS.gene012251:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.1:6170678-6170697 | MS.gene012251:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.1:6170216-6170235 | MS.gene012251:intron | 40.0% | |
| TGAACAGTGTTAAACAGTGG+TGG | + | chr8.1:6171129-6171148 | None:intergenic | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.1:6169881-6169900 | MS.gene012251:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.1:6169668-6169687 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.1:6170106-6170125 | MS.gene012251:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.1:6169885-6169904 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.1:6170930-6170949 | MS.gene012251:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.1:6169732-6169751 | None:intergenic | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | - | chr8.1:6171045-6171064 | MS.gene012251:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.1:6169681-6169700 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.1:6171087-6171106 | MS.gene012251:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+TGG | - | chr8.1:6170997-6171016 | MS.gene012251:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.1:6169818-6169837 | MS.gene012251:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.1:6170167-6170186 | MS.gene012251:intron | 45.0% | |
| CGCGAATGTTAAGCAATTGG+TGG | - | chr8.1:6169979-6169998 | MS.gene012251:CDS | 45.0% | |
| CGGAATAACCGAAGGTTCTA+TGG | - | chr8.1:6171068-6171087 | MS.gene012251:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.1:6169830-6169849 | MS.gene012251:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.1:6170246-6170265 | MS.gene012251:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.1:6170862-6170881 | MS.gene012251:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.1:6170696-6170715 | MS.gene012251:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.1:6170874-6170893 | MS.gene012251:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.1:6170079-6170098 | MS.gene012251:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.1:6169563-6169582 | MS.gene012251:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.1:6170753-6170772 | MS.gene012251:CDS | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | - | chr8.1:6171042-6171061 | MS.gene012251:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.1:6170969-6170988 | MS.gene012251:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.1:6170695-6170714 | MS.gene012251:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.1:6170203-6170222 | MS.gene012251:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.1:6169567-6169586 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.1:6170282-6170301 | MS.gene012251:intron | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.1:6170030-6170049 | MS.gene012251:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.1:6170342-6170361 | MS.gene012251:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.1:6170494-6170513 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.1:6169716-6169735 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.1:6169635-6169654 | None:intergenic | 50.0% | |
| AATGGAGGCGGAATAACCGA+AGG | - | chr8.1:6171060-6171079 | MS.gene012251:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | - | chr8.1:6171048-6171067 | MS.gene012251:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.1:6169634-6169653 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.1:6169661-6169680 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.1:6170371-6170390 | MS.gene012251:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.1:6171162-6171181 | MS.gene012251:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.1:6169763-6169782 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.1:6170358-6170377 | MS.gene012251:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.1:6170687-6170706 | MS.gene012251:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.1:6169722-6169741 | MS.gene012251:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.1:6170929-6170948 | MS.gene012251:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.1:6170060-6170079 | MS.gene012251:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.1:6171174-6171193 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.1:6170051-6170070 | MS.gene012251:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.1:6169569-6169588 | MS.gene012251:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.1:6169871-6169890 | MS.gene012251:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.1:6170050-6170069 | MS.gene012251:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.1:6169989-6170008 | MS.gene012251:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.1:6170341-6170360 | MS.gene012251:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.1:6170294-6170313 | MS.gene012251:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.1:6170774-6170793 | MS.gene012251:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.1:6169696-6169715 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.1:6170252-6170271 | MS.gene012251:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.1:6171171-6171190 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.1:6170333-6170352 | MS.gene012251:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.1:6171161-6171180 | MS.gene012251:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.1:6170191-6170210 | MS.gene012251:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.1:6169749-6169768 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.1:6169585-6169604 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.1:6170190-6170209 | MS.gene012251:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.1:6170363-6170382 | MS.gene012251:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.1:6169728-6169747 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.1:6170267-6170286 | MS.gene012251:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.1:6170172-6170191 | MS.gene012251:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.1:6170287-6170306 | MS.gene012251:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.1:6169574-6169593 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.1:6170306-6170325 | MS.gene012251:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.1:6170297-6170316 | MS.gene012251:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.1:6169651-6169670 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.1:6169646-6169665 | MS.gene012251:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.1:6171157-6171176 | MS.gene012251:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.1:6169868-6169887 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.1:6169865-6169884 | MS.gene012251:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.1:6170186-6170205 | MS.gene012251:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.1:6170318-6170337 | MS.gene012251:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.1:6170189-6170208 | MS.gene012251:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6169542 | 6171209 | 6169542 | ID=MS.gene012251 |
| chr8.1 | mRNA | 6169542 | 6171209 | 6169542 | ID=MS.gene012251.t1;Parent=MS.gene012251 |
| chr8.1 | exon | 6170283 | 6171209 | 6170283 | ID=MS.gene012251.t1.exon1;Parent=MS.gene012251.t1 |
| chr8.1 | CDS | 6170283 | 6171209 | 6170283 | ID=cds.MS.gene012251.t1;Parent=MS.gene012251.t1 |
| chr8.1 | exon | 6169542 | 6170051 | 6169542 | ID=MS.gene012251.t1.exon2;Parent=MS.gene012251.t1 |
| chr8.1 | CDS | 6169542 | 6170051 | 6169542 | ID=cds.MS.gene012251.t1;Parent=MS.gene012251.t1 |
| Gene Sequence |
| Protein sequence |
