Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036175.t1 | XP_013468625.1 | 95.6 | 478 | 17 | 1 | 1 | 478 | 1 | 474 | 1.80E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036175.t1 | D2XNQ8 | 93.3 | 478 | 32 | 0 | 1 | 478 | 1 | 478 | 2.7e-181 | 636.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036175.t1 | A0A072VLE3 | 95.6 | 478 | 17 | 1 | 1 | 478 | 1 | 474 | 1.3e-181 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036175.t1 | MTR_1g073400 | 96.234 | 478 | 14 | 1 | 1 | 478 | 1 | 474 | 0.0 | 934 |
| MS.gene036175.t1 | MTR_3g106480 | 91.841 | 478 | 39 | 0 | 1 | 478 | 1 | 478 | 0.0 | 902 |
| MS.gene036175.t1 | MTR_1g115145 | 93.946 | 479 | 22 | 3 | 1 | 478 | 1 | 473 | 0.0 | 884 |
| MS.gene036175.t1 | MTR_1g071130 | 91.004 | 478 | 14 | 2 | 1 | 478 | 1 | 449 | 0.0 | 878 |
| MS.gene036175.t1 | MTR_3g106420 | 91.841 | 478 | 39 | 0 | 1 | 478 | 3 | 480 | 0.0 | 875 |
| MS.gene036175.t1 | MTR_3g106485 | 91.632 | 478 | 36 | 2 | 1 | 478 | 1 | 474 | 0.0 | 865 |
| MS.gene036175.t1 | MTR_1g083190 | 89.121 | 478 | 44 | 1 | 1 | 478 | 3 | 472 | 0.0 | 838 |
| MS.gene036175.t1 | MTR_3g106430 | 91.614 | 477 | 36 | 2 | 1 | 477 | 1 | 473 | 0.0 | 835 |
| MS.gene036175.t1 | MTR_3g106470 | 80.294 | 477 | 38 | 2 | 1 | 477 | 32 | 452 | 0.0 | 731 |
| MS.gene036175.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 672 |
| MS.gene036175.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 4.52e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036175.t1 | AT5G25260 | 74.684 | 474 | 108 | 2 | 1 | 474 | 1 | 462 | 0.0 | 734 |
| MS.gene036175.t1 | AT5G25250 | 75.264 | 473 | 103 | 2 | 1 | 473 | 1 | 459 | 0.0 | 727 |
| MS.gene036175.t1 | AT5G64870 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 657 |
Find 116 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.3:-51102045 | MS.gene036175:CDS |
| CAACTCGAACTAAACCAATT+TGG | 0.161300 | 1.3:-51102117 | MS.gene036175:CDS |
| TGTAAATCAATAACCCAAAT+TGG | 0.249573 | 1.3:+51102103 | None:intergenic |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.3:-51101074 | MS.gene036175:CDS |
| CGGAATAACCGAAGGTTCTA+TGG | 0.252432 | 1.3:-51101028 | MS.gene036175:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.3:-51101717 | MS.gene036175:CDS |
| TTTAGGTGCAAGAGGCTAAC+TGG | 0.292403 | 1.3:-51101401 | MS.gene036175:intron |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.3:-51101147 | MS.gene036175:CDS |
| GTGAAGTTGGTTCGAAATCT+AGG | 0.296293 | 1.3:-51101957 | MS.gene036175:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.3:-51102044 | MS.gene036175:CDS |
| AACTCGAACTAAACCAATTT+GGG | 0.307435 | 1.3:-51102116 | MS.gene036175:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.3:+51101069 | None:intergenic |
| TCTAAGGGAAGCTGAGTTGC+AGG | 0.329397 | 1.3:-51101701 | MS.gene036175:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.3:-51101855 | MS.gene036175:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.3:-51100935 | MS.gene036175:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.350504 | 1.3:-51102336 | MS.gene036175:CDS |
| TCTTTGCAAGTTTGATGTCT+TGG | 0.356510 | 1.3:+51102463 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.3:-51101066 | MS.gene036175:CDS |
| GAAACGACTATACAGCTCTA+AGG | 0.371905 | 1.3:-51101167 | MS.gene036175:CDS |
| GATGTCTTGGATTCCGGCTC+CGG | 0.372602 | 1.3:+51102476 | None:intergenic |
| AAGTTTGATGTCTTGGATTC+CGG | 0.388259 | 1.3:+51102470 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:-51102082 | MS.gene036175:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.3:-51102495 | MS.gene036175:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 1.3:+51101020 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 1.3:-51102455 | MS.gene036175:CDS |
| AATTAAAATCAACAATGTAC+AGG | 0.457853 | 1.3:-51102530 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 1.3:-51101234 | MS.gene036175:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.3:-51101349 | MS.gene036175:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.3:+51102286 | None:intergenic |
| TAAACTCTCAAATCACGTTA+AGG | 0.484828 | 1.3:-51102253 | MS.gene036175:CDS |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.3:-51102028 | MS.gene036175:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.3:-51100958 | MS.gene036175:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 1.3:+51102176 | None:intergenic |
| TGGAAGCAGCAAATCAAGCT+AGG | 0.499980 | 1.3:-51102008 | MS.gene036175:CDS |
| ATGGGTATGAAAGAGGTTGC+CGG | 0.500606 | 1.3:-51101009 | MS.gene036175:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.3:-51101716 | MS.gene036175:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 1.3:+51102333 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.3:-51100939 | MS.gene036175:CDS |
| CACGTTAAGGAACTCGTTCA+AGG | 0.504618 | 1.3:-51102240 | MS.gene036175:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.3:-51102187 | MS.gene036175:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.3:-51102505 | MS.gene036175:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 1.3:-51101970 | MS.gene036175:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.3:-51101842 | MS.gene036175:CDS |
| TGCATTGAGAAGTGTACTTA+CGG | 0.519105 | 1.3:+51101194 | None:intergenic |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.3:+51100950 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.3:-51100934 | MS.gene036175:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.3:-51101886 | MS.gene036175:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.3:-51102069 | MS.gene036175:CDS |
| CACTGTCTTCGACCTCTCAC+CGG | 0.527522 | 1.3:-51102412 | MS.gene036175:CDS |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.3:-51101891 | MS.gene036175:CDS |
| GAAGAAAGCAGCGTGGACTA+AGG | 0.533522 | 1.3:-51101764 | MS.gene036175:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.3:-51101740 | MS.gene036175:CDS |
| TTCCGGCTCCGGTTATCACC+AGG | 0.533995 | 1.3:+51102487 | None:intergenic |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.3:-51101063 | MS.gene036175:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.3:-51101127 | MS.gene036175:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.539596 | 1.3:+51102494 | None:intergenic |
| GTGGACTAAGGCGGCTCAAG+TGG | 0.547569 | 1.3:-51101752 | MS.gene036175:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.3:+51100925 | None:intergenic |
| GGAAGCTGAGTTGCAGGGTG+AGG | 0.555691 | 1.3:-51101695 | MS.gene036175:CDS |
| GGCTGAGGCTAATTCAGAGT+TGG | 0.558654 | 1.3:-51101791 | MS.gene036175:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.3:-51101806 | MS.gene036175:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:-51102079 | MS.gene036175:CDS |
| TTAGGTGCAAGAGGCTAACT+GGG | 0.565211 | 1.3:-51101400 | MS.gene036175:intron |
| TGGTTTACTTTAGGTGCAAG+AGG | 0.565909 | 1.3:-51101409 | MS.gene036175:intron |
| TACCTGGTGATAACCGGAGC+CGG | 0.568923 | 1.3:-51102489 | MS.gene036175:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.3:-51101189 | MS.gene036175:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.3:-51102193 | MS.gene036175:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.3:+51102393 | None:intergenic |
| TGAAGTTGGTTCGAAATCTA+GGG | 0.572755 | 1.3:-51101956 | MS.gene036175:CDS |
| AAGACAGTGCAAGATTGACC+AGG | 0.574032 | 1.3:+51102426 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.3:+51102400 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 1.3:-51101016 | MS.gene036175:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.578747 | 1.3:-51101027 | MS.gene036175:CDS |
| AAGACAGCGGGGAGAACGAA+AGG | 0.579924 | 1.3:+51102345 | None:intergenic |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 1.3:-51101322 | MS.gene036175:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 1.3:-51101222 | MS.gene036175:CDS |
| ATTTGAGAGTTTATCATGAG+GGG | 0.586830 | 1.3:+51102263 | None:intergenic |
| AGTTGCAGGGTGAGGTTGAG+AGG | 0.589803 | 1.3:-51101687 | MS.gene036175:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.3:-51101812 | MS.gene036175:CDS |
| GATTTGAGAGTTTATCATGA+GGG | 0.596952 | 1.3:+51102262 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.3:-51101343 | MS.gene036175:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.3:+51102380 | None:intergenic |
| AAACGACTATACAGCTCTAA+GGG | 0.604913 | 1.3:-51101166 | MS.gene036175:CDS |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.3:-51101048 | MS.gene036175:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.3:-51101054 | MS.gene036175:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.3:-51101868 | MS.gene036175:CDS |
| GGAAGCAGCAAATCAAGCTA+GGG | 0.610474 | 1.3:-51102007 | MS.gene036175:CDS |
| CTCGTTCAAGGAATCATCGA+AGG | 0.613655 | 1.3:-51102228 | MS.gene036175:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.3:-51101979 | MS.gene036175:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 1.3:+51100967 | None:intergenic |
| ATCAATGCTGAGGCGGTACG+CGG | 0.627597 | 1.3:-51101099 | MS.gene036175:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.3:-51101869 | MS.gene036175:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.3:-51101890 | MS.gene036175:CDS |
| CTAAGGGAAGCTGAGTTGCA+GGG | 0.631632 | 1.3:-51101700 | MS.gene036175:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.3:+51102051 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.3:-51101611 | MS.gene036175:intron |
| ATTAAAATCAACAATGTACA+GGG | 0.646138 | 1.3:-51102529 | None:intergenic |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.3:-51101872 | MS.gene036175:CDS |
| GAAAGCAGCGTGGACTAAGG+CGG | 0.652332 | 1.3:-51101761 | MS.gene036175:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 1.3:+51100970 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.3:-51101144 | MS.gene036175:CDS |
| TGGCAGCATCTTGTAAACAC+CGG | 0.663496 | 1.3:+51100990 | None:intergenic |
| GGCTAAGATCAATGCTGAGG+CGG | 0.666149 | 1.3:-51101106 | MS.gene036175:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.3:-51101725 | MS.gene036175:CDS |
| TGATTTGAGAGTTTATCATG+AGG | 0.667589 | 1.3:+51102261 | None:intergenic |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.3:+51100928 | None:intergenic |
| GTTGGTTCGAAATCTAGGGA+AGG | 0.671440 | 1.3:-51101952 | MS.gene036175:CDS |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.3:-51101051 | MS.gene036175:CDS |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.3:-51101109 | MS.gene036175:CDS |
| AATGGAGGCGGAATAACCGA+AGG | 0.683343 | 1.3:-51101036 | MS.gene036175:CDS |
| CTTTCGTCATCGTCAACACG+AGG | 0.690352 | 1.3:+51102312 | None:intergenic |
| AGACAGTGCAAGATTGACCA+GGG | 0.698680 | 1.3:+51102427 | None:intergenic |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 1.3:+51102334 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.3:+51102332 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.3:+51102193 | None:intergenic |
| TGGCGAAGAAGAAAGCAGCG+TGG | 0.765189 | 1.3:-51101771 | MS.gene036175:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATGAATGAAAGA+AGG | + | chr1.3:51101856-51101875 | None:intergenic | 15.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr1.3:51101381-51101400 | MS.gene036175:CDS | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | - | chr1.3:51101980-51101999 | MS.gene036175:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr1.3:51101380-51101399 | MS.gene036175:CDS | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr1.3:51102359-51102378 | MS.gene036175:CDS | 25.0% |
| ! | AATGAAAGAAGGAGTTATAT+TGG | + | chr1.3:51101845-51101864 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAACCCAAAT+TGG | + | chr1.3:51101325-51101344 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.3:51102359-51102378 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr1.3:51102351-51102370 | MS.gene036175:CDS | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | + | chr1.3:51101142-51101161 | None:intergenic | 30.0% | |
| AACTCGAACTAAACCAATTT+GGG | - | chr1.3:51101309-51101328 | MS.gene036175:CDS | 30.0% | |
| AATTCTGGATGGTTTACTTT+AGG | - | chr1.3:51102007-51102026 | MS.gene036175:CDS | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | - | chr1.3:51102362-51102381 | MS.gene036175:CDS | 30.0% | |
| ATTTGAGAGTTTATCATGAG+GGG | + | chr1.3:51101165-51101184 | None:intergenic | 30.0% | |
| GATTTGAGAGTTTATCATGA+GGG | + | chr1.3:51101166-51101185 | None:intergenic | 30.0% | |
| GTTATACGCAAAGAAAAAAG+AGG | - | chr1.3:51102169-51102188 | MS.gene036175:CDS | 30.0% | |
| TAAACTCTCAAATCACGTTA+AGG | - | chr1.3:51101172-51101191 | MS.gene036175:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr1.3:51101377-51101396 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr1.3:51100970-51100989 | MS.gene036175:CDS | 30.0% | |
| TGATTTGAGAGTTTATCATG+AGG | + | chr1.3:51101167-51101186 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr1.3:51102278-51102297 | MS.gene036175:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr1.3:51102281-51102300 | MS.gene036175:CDS | 30.0% |
| ! | TTAAGAGCTTTTATCGGATA+AGG | + | chr1.3:51102519-51102538 | None:intergenic | 30.0% |
| !! | TTAAGTACTGGTTGAAATTC+TGG | - | chr1.3:51101992-51102011 | MS.gene036175:CDS | 30.0% |
| AAGTTTGATGTCTTGGATTC+CGG | + | chr1.3:51100958-51100977 | None:intergenic | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr1.3:51102076-51102095 | MS.gene036175:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr1.3:51102177-51102196 | MS.gene036175:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+TGG | - | chr1.3:51101308-51101327 | MS.gene036175:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.3:51101343-51101362 | MS.gene036175:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | - | chr1.3:51101535-51101554 | MS.gene036175:intron | 35.0% | |
| GAGTTATATTGGACTAACCT+TGG | + | chr1.3:51101834-51101853 | None:intergenic | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr1.3:51102461-51102480 | None:intergenic | 35.0% | |
| TCTTTGCAAGTTTGATGTCT+TGG | + | chr1.3:51100965-51100984 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr1.3:51102408-51102427 | None:intergenic | 35.0% | |
| ! | AAACGACTATACAGCTCTAA+GGG | - | chr1.3:51102259-51102278 | MS.gene036175:CDS | 35.0% |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr1.3:51100981-51101000 | MS.gene036175:CDS | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | - | chr1.3:51101814-51101833 | MS.gene036175:CDS | 35.0% |
| ! | TGCATTGAGAAGTGTACTTA+CGG | + | chr1.3:51102234-51102253 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr1.3:51101604-51101623 | MS.gene036175:intron | 35.0% |
| !! | TGAAGTTGGTTCGAAATCTA+GGG | - | chr1.3:51101469-51101488 | MS.gene036175:intron | 35.0% |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr1.3:51102409-51102428 | MS.gene036175:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr1.3:51102236-51102255 | MS.gene036175:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | - | chr1.3:51101534-51101553 | MS.gene036175:intron | 40.0% | |
| GAAACGACTATACAGCTCTA+AGG | - | chr1.3:51102258-51102277 | MS.gene036175:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | - | chr1.3:51101508-51101527 | MS.gene036175:intron | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr1.3:51102176-51102195 | MS.gene036175:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr1.3:51101455-51101474 | MS.gene036175:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr1.3:51102398-51102417 | MS.gene036175:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr1.3:51101446-51101465 | MS.gene036175:intron | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr1.3:51101583-51101602 | MS.gene036175:intron | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.3:51101346-51101365 | MS.gene036175:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr1.3:51102458-51102477 | None:intergenic | 40.0% | |
| TGGTTTACTTTAGGTGCAAG+AGG | - | chr1.3:51102016-51102035 | MS.gene036175:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | - | chr1.3:51101570-51101589 | MS.gene036175:intron | 40.0% |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr1.3:51101248-51101267 | MS.gene036175:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr1.3:51101035-51101054 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGCAGTTTTT+CGG | + | chr1.3:51101072-51101091 | None:intergenic | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr1.3:51101252-51101271 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | - | chr1.3:51101397-51101416 | MS.gene036175:CDS | 40.0% |
| !! | GTACTGGTTGAAATTCTGGA+TGG | - | chr1.3:51101996-51102015 | MS.gene036175:CDS | 40.0% |
| !! | GTGAAGTTGGTTCGAAATCT+AGG | - | chr1.3:51101468-51101487 | MS.gene036175:intron | 40.0% |
| AAGACAGTGCAAGATTGACC+AGG | + | chr1.3:51101002-51101021 | None:intergenic | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr1.3:51102467-51102486 | MS.gene036175:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | - | chr1.3:51102374-51102393 | MS.gene036175:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr1.3:51101048-51101067 | None:intergenic | 45.0% | |
| AGACAGTGCAAGATTGACCA+GGG | + | chr1.3:51101001-51101020 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr1.3:51101096-51101115 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+CGG | - | chr1.3:51102416-51102435 | MS.gene036175:CDS | 45.0% | |
| CACGTTAAGGAACTCGTTCA+AGG | - | chr1.3:51101185-51101204 | MS.gene036175:CDS | 45.0% | |
| CGGAATAACCGAAGGTTCTA+TGG | - | chr1.3:51102397-51102416 | MS.gene036175:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr1.3:51101197-51101216 | MS.gene036175:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.3:51101613-51101632 | MS.gene036175:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | - | chr1.3:51102316-51102335 | MS.gene036175:CDS | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr1.3:51102191-51102210 | MS.gene036175:CDS | 45.0% | |
| GGAAGCAGCAAATCAAGCTA+GGG | - | chr1.3:51101418-51101437 | MS.gene036175:intron | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr1.3:51102203-51102222 | MS.gene036175:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr1.3:51102082-51102101 | MS.gene036175:CDS | 45.0% | |
| TGGAAGCAGCAAATCAAGCT+AGG | - | chr1.3:51101417-51101436 | MS.gene036175:intron | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | - | chr1.3:51102371-51102390 | MS.gene036175:CDS | 45.0% | |
| TGGCAGCATCTTGTAAACAC+CGG | + | chr1.3:51102438-51102457 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr1.3:51102298-51102317 | MS.gene036175:CDS | 45.0% | |
| TTAGGTGCAAGAGGCTAACT+GGG | - | chr1.3:51102025-51102044 | MS.gene036175:CDS | 45.0% | |
| TTTAGGTGCAAGAGGCTAAC+TGG | - | chr1.3:51102024-51102043 | MS.gene036175:CDS | 45.0% | |
| !! | GTTGGTTCGAAATCTAGGGA+AGG | - | chr1.3:51101473-51101492 | MS.gene036175:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr1.3:51101709-51101728 | MS.gene036175:CDS | 45.0% |
| AATGGAGGCGGAATAACCGA+AGG | - | chr1.3:51102389-51102408 | MS.gene036175:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | - | chr1.3:51102377-51102396 | MS.gene036175:CDS | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr1.3:51101028-51101047 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr1.3:51102491-51102510 | MS.gene036175:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+GGG | - | chr1.3:51101725-51101744 | MS.gene036175:CDS | 50.0% | |
| CTTTCGTCATCGTCAACACG+AGG | + | chr1.3:51101116-51101135 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr1.3:51101094-51101113 | None:intergenic | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr1.3:51102503-51102522 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr1.3:51102478-51102497 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr1.3:51101095-51101114 | None:intergenic | 50.0% | |
| GGCTAAGATCAATGCTGAGG+CGG | - | chr1.3:51102319-51102338 | MS.gene036175:CDS | 50.0% | |
| GGCTGAGGCTAATTCAGAGT+TGG | - | chr1.3:51101634-51101653 | MS.gene036175:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | - | chr1.3:51101539-51101558 | MS.gene036175:intron | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | - | chr1.3:51100930-51100949 | MS.gene036175:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | + | chr1.3:51100934-51100953 | None:intergenic | 50.0% | |
| TCTAAGGGAAGCTGAGTTGC+AGG | - | chr1.3:51101724-51101743 | MS.gene036175:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr1.3:51101238-51101257 | MS.gene036175:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr1.3:51101356-51101375 | MS.gene036175:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr1.3:51101708-51101727 | MS.gene036175:CDS | 50.0% |
| ! | GAAGAAAGCAGCGTGGACTA+AGG | - | chr1.3:51101661-51101680 | MS.gene036175:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr1.3:51102103-51102122 | MS.gene036175:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | - | chr1.3:51100920-51100939 | MS.gene036175:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr1.3:51101063-51101082 | None:intergenic | 50.0% |
| AAGACAGCGGGGAGAACGAA+AGG | + | chr1.3:51101083-51101102 | None:intergenic | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr1.3:51101619-51101638 | MS.gene036175:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr1.3:51102500-51102519 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr1.3:51101700-51101719 | MS.gene036175:CDS | 55.0% | |
| AGTTGCAGGGTGAGGTTGAG+AGG | - | chr1.3:51101738-51101757 | MS.gene036175:CDS | 55.0% | |
| ATCAATGCTGAGGCGGTACG+CGG | - | chr1.3:51102326-51102345 | MS.gene036175:CDS | 55.0% | |
| CACTGTCTTCGACCTCTCAC+CGG | - | chr1.3:51101013-51101032 | MS.gene036175:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr1.3:51102490-51102509 | MS.gene036175:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr1.3:51101089-51101108 | MS.gene036175:CDS | 55.0% | |
| GATGTCTTGGATTCCGGCTC+CGG | + | chr1.3:51100952-51100971 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr1.3:51101557-51101576 | MS.gene036175:intron | 55.0% | |
| TACCTGGTGATAACCGGAGC+CGG | - | chr1.3:51100936-51100955 | MS.gene036175:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCAGCG+TGG | - | chr1.3:51101654-51101673 | MS.gene036175:CDS | 55.0% | |
| ! | GAAAGCAGCGTGGACTAAGG+CGG | - | chr1.3:51101664-51101683 | MS.gene036175:CDS | 55.0% |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr1.3:51102486-51102505 | MS.gene036175:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr1.3:51101235-51101254 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr1.3:51101232-51101251 | MS.gene036175:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr1.3:51101553-51101572 | MS.gene036175:intron | 60.0% | |
| GGAAGCTGAGTTGCAGGGTG+AGG | - | chr1.3:51101730-51101749 | MS.gene036175:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr1.3:51101685-51101704 | MS.gene036175:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr1.3:51101556-51101575 | MS.gene036175:intron | 60.0% | |
| TTCCGGCTCCGGTTATCACC+AGG | + | chr1.3:51100941-51100960 | None:intergenic | 60.0% | |
| ! | GTGGACTAAGGCGGCTCAAG+TGG | - | chr1.3:51101673-51101692 | MS.gene036175:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 51100909 | 51102538 | 51100909 | ID=MS.gene036175 |
| chr1.3 | mRNA | 51100909 | 51102538 | 51100909 | ID=MS.gene036175.t1;Parent=MS.gene036175 |
| chr1.3 | exon | 51101612 | 51102538 | 51101612 | ID=MS.gene036175.t1.exon1;Parent=MS.gene036175.t1 |
| chr1.3 | CDS | 51101612 | 51102538 | 51101612 | ID=cds.MS.gene036175.t1;Parent=MS.gene036175.t1 |
| chr1.3 | exon | 51100909 | 51101418 | 51100909 | ID=MS.gene036175.t1.exon2;Parent=MS.gene036175.t1 |
| chr1.3 | CDS | 51100909 | 51101418 | 51100909 | ID=cds.MS.gene036175.t1;Parent=MS.gene036175.t1 |
| Gene Sequence |
| Protein sequence |
