AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50560.t1 MTR_1g073400 95.816 478 16 1 1 478 1 474 0.0 932
MS.gene50560.t1 MTR_3g106480 91.423 478 41 0 1 478 1 478 0.0 898
MS.gene50560.t1 MTR_1g115145 93.528 479 24 3 1 478 1 473 0.0 881
MS.gene50560.t1 MTR_1g071130 90.586 478 16 2 1 478 1 449 0.0 875
MS.gene50560.t1 MTR_3g106420 91.423 478 41 0 1 478 3 480 0.0 871
MS.gene50560.t1 MTR_3g106485 91.213 478 38 2 1 478 1 474 0.0 863
MS.gene50560.t1 MTR_1g083190 88.912 478 45 1 1 478 3 472 0.0 836
MS.gene50560.t1 MTR_3g106430 91.405 477 37 2 1 477 1 473 0.0 833
MS.gene50560.t1 MTR_3g106470 79.874 477 40 2 1 477 32 452 0.0 728
MS.gene50560.t1 MTR_8g063830 80.000 465 52 5 1 464 1 425 0.0 670
MS.gene50560.t1 MTR_3g065540 65.217 115 13 1 40 154 14 101 4.42e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50560.t1 AT5G25260 74.262 474 110 2 1 474 1 462 0.0 731
MS.gene50560.t1 AT5G25250 74.841 473 105 2 1 473 1 459 0.0 724
MS.gene50560.t1 AT5G64870 70.975 472 126 1 2 473 3 463 0.0 654

Find 118 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103686 1.2:-54446138 MS.gene50560:CDS
TTGAACCTAAGATTAGTATT+TGG 0.251111 1.2:-54445221 MS.gene50560:CDS
CGGAATAACCGAAGGTTCTA+TGG 0.252432 1.2:-54445175 MS.gene50560:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1.2:-54445810 MS.gene50560:CDS
TTTAGGTGCAAGAGGCTAAC+TGG 0.292403 1.2:-54445548 MS.gene50560:intron
AGGGATTACTTGATGATAAA+TGG 0.295084 1.2:-54445294 MS.gene50560:CDS
GTGAAGTTGGTTCGAAATCT+AGG 0.296293 1.2:-54446050 MS.gene50560:CDS
ATGAATATTTCTCATATTTA+GGG 0.305111 1.2:-54446137 MS.gene50560:CDS
TTAGTCCAAATACTAATCTT+AGG 0.318195 1.2:+54445216 None:intergenic
TCTAAGGGAAGCTGAGTTGC+AGG 0.329397 1.2:-54445794 MS.gene50560:CDS
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1.2:-54445948 MS.gene50560:CDS
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 1.2:-54445082 MS.gene50560:CDS
CAACTCGAGTTGAATCAATT+CGG 0.347216 1.2:-54446210 MS.gene50560:CDS
CTCCCCGCTGTCTTCACAAT+TGG 0.351633 1.2:-54446429 MS.gene50560:CDS
TCTTTGCAAGTTTGATGTCT+TGG 0.356510 1.2:+54446556 None:intergenic
AAGATTAGTATTTGGACTAA+TGG 0.361897 1.2:-54445213 MS.gene50560:CDS
GAAACGACTATACAGCTCTA+AGG 0.371905 1.2:-54445314 MS.gene50560:CDS
GATGTCTTGGATTCCGGCTC+CGG 0.372602 1.2:+54446569 None:intergenic
AAGTTTGATGTCTTGGATTC+CGG 0.388259 1.2:+54446563 None:intergenic
AAGCAATTGGTGGATGTTCC+TGG 0.398620 1.2:-54446162 MS.gene50560:CDS
CAACGCGAATGTTAAGCAAT+TGG 0.420451 1.2:-54446175 MS.gene50560:CDS
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1.2:-54446588 MS.gene50560:CDS
AACTCGAGTTGAATCAATTC+GGG 0.439303 1.2:-54446209 MS.gene50560:CDS
TTTCATACCCATAGAACCTT+CGG 0.446868 1.2:+54445167 None:intergenic
TCAAACTTGCAAAGAAATCA+TGG 0.455886 1.2:-54446548 MS.gene50560:CDS
AATCAAAATCAACAATGTAC+AGG 0.458619 1.2:-54446623 None:intergenic
GCAGAAGGGATTGTGACAAT+TGG 0.461115 1.2:-54445381 MS.gene50560:CDS
AGCAATTCTGTATGAGAAGA+AGG 0.462456 1.2:-54445496 MS.gene50560:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.473661 1.2:+54446379 None:intergenic
GAAGAAAGCGGCGTGGACTA+AGG 0.476838 1.2:-54445857 MS.gene50560:CDS
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1.2:-54446121 MS.gene50560:CDS
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1.2:-54445105 MS.gene50560:CDS
CACCGTCTTCGACCTCTCTC+CGG 0.492948 1.2:-54446505 MS.gene50560:CDS
TAAACTCTCGAATCACGTTA+AGG 0.495282 1.2:-54446346 MS.gene50560:CDS
TCCTTTGAAAACCTCTTCCA+TGG 0.499133 1.2:+54446269 None:intergenic
TGGAAGCAGCAAATCAAGCT+AGG 0.499980 1.2:-54446101 MS.gene50560:CDS
AAGACAGCGGGGAGAATGAA+AGG 0.500164 1.2:+54446438 None:intergenic
CGCGAATGTTAAGCAATTGG+TGG 0.500388 1.2:-54446172 MS.gene50560:CDS
ATGGGTATGAAAGAGGTTGC+CGG 0.500606 1.2:-54445156 MS.gene50560:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1.2:-54445809 MS.gene50560:CDS
GGACCAATTGTGAAGACAGC+GGG 0.501529 1.2:+54446426 None:intergenic
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 1.2:-54445086 MS.gene50560:CDS
CACGTTAAGGAACTCGTTCA+AGG 0.504618 1.2:-54446333 MS.gene50560:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1.2:-54446280 MS.gene50560:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1.2:-54446598 MS.gene50560:CDS
CAAAAGTTATTGCGATGCAG+AGG 0.509445 1.2:-54445984 MS.gene50560:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.511842 1.2:-54446063 MS.gene50560:CDS
GTTATTGCGATGCAGAGGGC+TGG 0.513050 1.2:-54445979 MS.gene50560:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1.2:-54445935 MS.gene50560:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 1.2:+54445097 None:intergenic
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 1.2:-54445081 MS.gene50560:CDS
TTCCGGCTCCGGTTATCACC+AGG 0.533995 1.2:+54446580 None:intergenic
ATTAGTATTTGGACTAATGG+AGG 0.534214 1.2:-54445210 MS.gene50560:CDS
AGCTCAAGTGGCTGAAGTCG+AGG 0.538118 1.2:-54445833 MS.gene50560:CDS
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1.2:-54445274 MS.gene50560:CDS
TCCGGTTATCACCAGGTACT+CGG 0.539596 1.2:+54446587 None:intergenic
TGCATTGAGAAGTATACTTA+CGG 0.541577 1.2:+54445341 None:intergenic
AGTATACTTCTCAATGCACT+TGG 0.548547 1.2:-54445336 MS.gene50560:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1.2:+54445072 None:intergenic
GGAAGCTGAGTTGCAGGGTG+AGG 0.555691 1.2:-54445788 MS.gene50560:CDS
GGCTGAGGCTAATTCAGAGT+TGG 0.558654 1.2:-54445884 MS.gene50560:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1.2:-54445899 MS.gene50560:CDS
ACTTCGAAGGTATAGTTCAC+CGG 0.559579 1.2:+54446486 None:intergenic
GTGGACTAAGGCAGCTCAAG+TGG 0.559843 1.2:-54445845 MS.gene50560:CDS
TTAGGTGCAAGAGGCTAACT+GGG 0.565211 1.2:-54445547 MS.gene50560:intron
TGGTTTACTTTAGGTGCAAG+AGG 0.565909 1.2:-54445556 MS.gene50560:intron
TACCTGGTGATAACCGGAGC+CGG 0.568923 1.2:-54446582 MS.gene50560:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1.2:-54446286 MS.gene50560:CDS
TGAAGTTGGTTCGAAATCTA+GGG 0.572755 1.2:-54446049 MS.gene50560:CDS
AAGACGGTGCAAGATTGACC+AGG 0.574032 1.2:+54446519 None:intergenic
AGGTTCTATGGGTATGAAAG+AGG 0.575883 1.2:-54445163 MS.gene50560:CDS
GGAATAACCGAAGGTTCTAT+GGG 0.578747 1.2:-54445174 MS.gene50560:CDS
GGCAGAAGCACAGAAAGCAT+TGG 0.582553 1.2:-54445469 MS.gene50560:CDS
GTGACAATTGGACAAGCTCA+AGG 0.582712 1.2:-54445369 MS.gene50560:CDS
AGGTATAGTTCACCGGAGAG+AGG 0.582932 1.2:+54446493 None:intergenic
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1.2:+54446382 None:intergenic
AGTTGCAGGGTGAGGTTGAG+AGG 0.589803 1.2:-54445780 MS.gene50560:CDS
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1.2:-54445905 MS.gene50560:CDS
TCTGTATGAGAAGAAGGCAG+AGG 0.600808 1.2:-54445490 MS.gene50560:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.601319 1.2:+54446473 None:intergenic
AGACAGCGGGGAGAATGAAA+GGG 0.602768 1.2:+54446439 None:intergenic
AAACGACTATACAGCTCTAA+GGG 0.604913 1.2:-54445313 MS.gene50560:CDS
AATGGAGGTGACAATGGAGG+CGG 0.607583 1.2:-54445195 MS.gene50560:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1.2:-54445201 MS.gene50560:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1.2:-54445961 MS.gene50560:CDS
GGAAGCAGCAAATCAAGCTA+GGG 0.610474 1.2:-54446100 MS.gene50560:CDS
GATTCGAGAGTTTATCATGA+GGG 0.613336 1.2:+54446355 None:intergenic
CTCGTTCAAGGAATCATCGA+AGG 0.613655 1.2:-54446321 MS.gene50560:CDS
GTGTCAGAAGCTAAGATGAA+AGG 0.614706 1.2:-54446072 MS.gene50560:CDS
TCATGGACAGTCTTAAACAA+AGG 0.619848 1.2:+54445114 None:intergenic
AAAAGTTATTGCGATGCAGA+GGG 0.623321 1.2:-54445983 MS.gene50560:CDS
ATCAATGCTGAGGCGGTACG+CGG 0.627597 1.2:-54445246 MS.gene50560:CDS
GGCTGGAGAGAGTGACAAGG+AGG 0.627665 1.2:-54445962 MS.gene50560:CDS
CACCGGAGAGAGGTCGAAGA+CGG 0.628279 1.2:+54446503 None:intergenic
CTAAGGGAAGCTGAGTTGCA+GGG 0.631632 1.2:-54445793 MS.gene50560:CDS
ATTCGAGAGTTTATCATGAG+GGG 0.631767 1.2:+54446356 None:intergenic
ATCAAAATCAACAATGTACA+GGG 0.634755 1.2:-54446622 None:intergenic
TATGAGAAATATTCATGACC+AGG 0.636387 1.2:+54446144 None:intergenic
TAGTGTTGAGTATGAAACCA+AGG 0.644971 1.2:-54445704 MS.gene50560:intron
GAGGGCTGGAGAGAGTGACA+AGG 0.646522 1.2:-54445965 MS.gene50560:CDS
TGGACAGTCTTAAACAAAGG+TGG 0.655933 1.2:+54445117 None:intergenic
GATTACTTGATGATAAATGG+TGG 0.658453 1.2:-54445291 MS.gene50560:CDS
TGGCAGCATCTTGTAAACAC+CGG 0.663496 1.2:+54445137 None:intergenic
GGCTAAGATCAATGCTGAGG+CGG 0.666149 1.2:-54445253 MS.gene50560:CDS
AGTCGAGGCTGCTAAAGCTG+TGG 0.666475 1.2:-54445818 MS.gene50560:CDS
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1.2:+54445075 None:intergenic
GTTGGTTCGAAATCTAGGGA+AGG 0.671440 1.2:-54446045 MS.gene50560:CDS
ACTAATGGAGGTGACAATGG+AGG 0.677352 1.2:-54445198 MS.gene50560:CDS
GATGGCTAAGATCAATGCTG+AGG 0.682349 1.2:-54445256 MS.gene50560:CDS
AATGGAGGCGGAATAACCGA+AGG 0.683343 1.2:-54445183 MS.gene50560:CDS
CTTTCGTCATCGTCAACACG+AGG 0.690352 1.2:+54446405 None:intergenic
AGAGTTGGCGAAGAAGAAAG+CGG 0.695769 1.2:-54445869 MS.gene50560:CDS
TGATTCGAGAGTTTATCATG+AGG 0.697294 1.2:+54446354 None:intergenic
GACCAATTGTGAAGACAGCG+GGG 0.714278 1.2:+54446427 None:intergenic
AGACGGTGCAAGATTGACCA+GGG 0.716272 1.2:+54446520 None:intergenic
TGGCGAAGAAGAAAGCGGCG+TGG 0.717862 1.2:-54445864 MS.gene50560:CDS
AGGACCAATTGTGAAGACAG+CGG 0.726189 1.2:+54446425 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1.2:+54446286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAATGAATGAAAGA+AGG + chr1.2:54446003-54446022 None:intergenic 15.0%
!! ATGAATATTTCTCATATTTA+GGG - chr1.2:54445528-54445547 MS.gene50560:CDS 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1.2:54446073-54446092 MS.gene50560:CDS 15.0%
!! CATGAATATTTCTCATATTT+AGG - chr1.2:54445527-54445546 MS.gene50560:CDS 20.0%
! AAGATTAGTATTTGGACTAA+TGG - chr1.2:54446452-54446471 MS.gene50560:CDS 25.0%
! AATGAAAGAAGGAGTTATAT+TGG + chr1.2:54445992-54446011 None:intergenic 25.0%
! TTAGTCCAAATACTAATCTT+AGG + chr1.2:54446452-54446471 None:intergenic 25.0%
! TTGAACCTAAGATTAGTATT+TGG - chr1.2:54446444-54446463 MS.gene50560:CDS 25.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1.2:54445289-54445308 None:intergenic 30.0%
AATTCTGGATGGTTTACTTT+AGG - chr1.2:54446100-54446119 MS.gene50560:CDS 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1.2:54446455-54446474 MS.gene50560:CDS 30.0%
GTTATACGCAAAGAAAAAAG+AGG - chr1.2:54446262-54446281 MS.gene50560:CDS 30.0%
TATGAGAAATATTCATGACC+AGG + chr1.2:54445524-54445543 None:intergenic 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1.2:54445117-54445136 MS.gene50560:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1.2:54446371-54446390 MS.gene50560:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1.2:54446374-54446393 MS.gene50560:CDS 30.0%
! TGCATTGAGAAGTATACTTA+CGG + chr1.2:54446327-54446346 None:intergenic 30.0%
!! TTAAGTACTGGTTGAAATTC+TGG - chr1.2:54446085-54446104 MS.gene50560:CDS 30.0%
AAAAGTTATTGCGATGCAGA+GGG - chr1.2:54445682-54445701 MS.gene50560:intron 35.0%
AAGTTTGATGTCTTGGATTC+CGG + chr1.2:54445105-54445124 None:intergenic 35.0%
AGCAATTCTGTATGAGAAGA+AGG - chr1.2:54446169-54446188 MS.gene50560:CDS 35.0%
AGTATACTTCTCAATGCACT+TGG - chr1.2:54446329-54446348 MS.gene50560:CDS 35.0%
ATTCGAGAGTTTATCATGAG+GGG + chr1.2:54445312-54445331 None:intergenic 35.0%
CAAAGAAAAAAGAGGCAGAA+GGG - chr1.2:54446270-54446289 MS.gene50560:CDS 35.0%
GAGTTATATTGGACTAACCT+TGG + chr1.2:54445981-54446000 None:intergenic 35.0%
GATTCGAGAGTTTATCATGA+GGG + chr1.2:54445313-54445332 None:intergenic 35.0%
TAAACTCTCGAATCACGTTA+AGG - chr1.2:54445319-54445338 MS.gene50560:CDS 35.0%
TCATGGACAGTCTTAAACAA+AGG + chr1.2:54446554-54446573 None:intergenic 35.0%
TCTTTGCAAGTTTGATGTCT+TGG + chr1.2:54445112-54445131 None:intergenic 35.0%
TGATTCGAGAGTTTATCATG+AGG + chr1.2:54445314-54445333 None:intergenic 35.0%
TTTCATACCCATAGAACCTT+CGG + chr1.2:54446501-54446520 None:intergenic 35.0%
! AAACGACTATACAGCTCTAA+GGG - chr1.2:54446352-54446371 MS.gene50560:CDS 35.0%
! AAGAAATCATGGATTTTCCC+TGG - chr1.2:54445128-54445147 MS.gene50560:CDS 35.0%
! GAGAATGAAAGGGAGTTTTT+CGG + chr1.2:54445219-54445238 None:intergenic 35.0%
! TAGTGTTGAGTATGAAACCA+AGG - chr1.2:54445961-54445980 MS.gene50560:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1.2:54446612-54446631 None:intergenic 35.0%
!! AACTCGAGTTGAATCAATTC+GGG - chr1.2:54445456-54445475 MS.gene50560:CDS 35.0%
!! CAACTCGAGTTGAATCAATT+CGG - chr1.2:54445455-54445474 MS.gene50560:CDS 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1.2:54445751-54445770 MS.gene50560:CDS 35.0%
!! TGAAGTTGGTTCGAAATCTA+GGG - chr1.2:54445616-54445635 MS.gene50560:intron 35.0%
AGGTTCTATGGGTATGAAAG+AGG - chr1.2:54446502-54446521 MS.gene50560:CDS 40.0%
CAAAAGTTATTGCGATGCAG+AGG - chr1.2:54445681-54445700 MS.gene50560:intron 40.0%
CAACGCGAATGTTAAGCAAT+TGG - chr1.2:54445490-54445509 MS.gene50560:CDS 40.0%
GAAACGACTATACAGCTCTA+AGG - chr1.2:54446351-54446370 MS.gene50560:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+AGG - chr1.2:54446269-54446288 MS.gene50560:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1.2:54445602-54445621 MS.gene50560:intron 40.0%
GGAATAACCGAAGGTTCTAT+GGG - chr1.2:54446491-54446510 MS.gene50560:CDS 40.0%
GTGTCAGAAGCTAAGATGAA+AGG - chr1.2:54445593-54445612 MS.gene50560:intron 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1.2:54445730-54445749 MS.gene50560:CDS 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1.2:54445286-54445305 None:intergenic 40.0%
TGGACAGTCTTAAACAAAGG+TGG + chr1.2:54446551-54446570 None:intergenic 40.0%
TGGTTTACTTTAGGTGCAAG+AGG - chr1.2:54446109-54446128 MS.gene50560:CDS 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1.2:54445717-54445736 MS.gene50560:CDS 40.0%
! ACCATGGAAGAGGTTTTCAA+AGG - chr1.2:54445395-54445414 MS.gene50560:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG + chr1.2:54445182-54445201 None:intergenic 40.0%
! TCCTTTGAAAACCTCTTCCA+TGG + chr1.2:54445399-54445418 None:intergenic 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1.2:54445544-54445563 MS.gene50560:CDS 40.0%
!! GTACTGGTTGAAATTCTGGA+TGG - chr1.2:54446089-54446108 MS.gene50560:CDS 40.0%
!! GTGAAGTTGGTTCGAAATCT+AGG - chr1.2:54445615-54445634 MS.gene50560:intron 40.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1.2:54446560-54446579 MS.gene50560:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1.2:54446467-54446486 MS.gene50560:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1.2:54445195-54445214 None:intergenic 45.0%
AGAGTTGGCGAAGAAGAAAG+CGG - chr1.2:54445796-54445815 MS.gene50560:CDS 45.0%
AGGACCAATTGTGAAGACAG+CGG + chr1.2:54445243-54445262 None:intergenic 45.0%
ATGGGTATGAAAGAGGTTGC+CGG - chr1.2:54446509-54446528 MS.gene50560:CDS 45.0%
CACGTTAAGGAACTCGTTCA+AGG - chr1.2:54445332-54445351 MS.gene50560:CDS 45.0%
CGCGAATGTTAAGCAATTGG+TGG - chr1.2:54445493-54445512 MS.gene50560:CDS 45.0%
CGGAATAACCGAAGGTTCTA+TGG - chr1.2:54446490-54446509 MS.gene50560:CDS 45.0%
CTCGTTCAAGGAATCATCGA+AGG - chr1.2:54445344-54445363 MS.gene50560:CDS 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1.2:54445760-54445779 MS.gene50560:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG - chr1.2:54446409-54446428 MS.gene50560:CDS 45.0%
GCAGAAGGGATTGTGACAAT+TGG - chr1.2:54446284-54446303 MS.gene50560:CDS 45.0%
GGAAGCAGCAAATCAAGCTA+GGG - chr1.2:54445565-54445584 MS.gene50560:intron 45.0%
GTGACAATTGGACAAGCTCA+AGG - chr1.2:54446296-54446315 MS.gene50560:CDS 45.0%
TCTGTATGAGAAGAAGGCAG+AGG - chr1.2:54446175-54446194 MS.gene50560:CDS 45.0%
TGGAAGCAGCAAATCAAGCT+AGG - chr1.2:54445564-54445583 MS.gene50560:intron 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1.2:54446464-54446483 MS.gene50560:CDS 45.0%
TGGCAGCATCTTGTAAACAC+CGG + chr1.2:54446531-54446550 None:intergenic 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1.2:54446391-54446410 MS.gene50560:CDS 45.0%
TTAGGTGCAAGAGGCTAACT+GGG - chr1.2:54446118-54446137 MS.gene50560:CDS 45.0%
TTTAGGTGCAAGAGGCTAAC+TGG - chr1.2:54446117-54446136 MS.gene50560:CDS 45.0%
! AAGCAATTGGTGGATGTTCC+TGG - chr1.2:54445503-54445522 MS.gene50560:CDS 45.0%
!! GTTGGTTCGAAATCTAGGGA+AGG - chr1.2:54445620-54445639 MS.gene50560:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1.2:54445856-54445875 MS.gene50560:CDS 45.0%
AAGACAGCGGGGAGAATGAA+AGG + chr1.2:54445230-54445249 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1.2:54445149-54445168 None:intergenic 50.0%
AATGGAGGCGGAATAACCGA+AGG - chr1.2:54446482-54446501 MS.gene50560:CDS 50.0%
AATGGAGGTGACAATGGAGG+CGG - chr1.2:54446470-54446489 MS.gene50560:CDS 50.0%
AGACAGCGGGGAGAATGAAA+GGG + chr1.2:54445229-54445248 None:intergenic 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1.2:54445148-54445167 None:intergenic 50.0%
AGGTATAGTTCACCGGAGAG+AGG + chr1.2:54445175-54445194 None:intergenic 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG - chr1.2:54446584-54446603 MS.gene50560:CDS 50.0%
CTAAGGGAAGCTGAGTTGCA+GGG - chr1.2:54445872-54445891 MS.gene50560:CDS 50.0%
CTTTCGTCATCGTCAACACG+AGG + chr1.2:54445263-54445282 None:intergenic 50.0%
GACCAATTGTGAAGACAGCG+GGG + chr1.2:54445241-54445260 None:intergenic 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1.2:54446596-54446615 None:intergenic 50.0%
GCAACATGCCTGTTTGCTCA+TGG + chr1.2:54446571-54446590 None:intergenic 50.0%
GGACCAATTGTGAAGACAGC+GGG + chr1.2:54445242-54445261 None:intergenic 50.0%
GGCTAAGATCAATGCTGAGG+CGG - chr1.2:54446412-54446431 MS.gene50560:CDS 50.0%
GGCTGAGGCTAATTCAGAGT+TGG - chr1.2:54445781-54445800 MS.gene50560:CDS 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1.2:54445077-54445096 MS.gene50560:CDS 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1.2:54445081-54445100 None:intergenic 50.0%
TCTAAGGGAAGCTGAGTTGC+AGG - chr1.2:54445871-54445890 MS.gene50560:CDS 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1.2:54445385-54445404 MS.gene50560:CDS 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1.2:54445855-54445874 MS.gene50560:CDS 50.0%
! GGCAGAAGCACAGAAAGCAT+TGG - chr1.2:54446196-54446215 MS.gene50560:CDS 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1.2:54445067-54445086 MS.gene50560:CDS 50.0%
!! AGGGAGTTTTTCGGCACTCA+TGG + chr1.2:54445210-54445229 None:intergenic 50.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1.2:54445766-54445785 MS.gene50560:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1.2:54446593-54446612 None:intergenic 55.0%
AGCTCAAGTGGCTGAAGTCG+AGG - chr1.2:54445832-54445851 MS.gene50560:CDS 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG - chr1.2:54445847-54445866 MS.gene50560:CDS 55.0%
AGTTGCAGGGTGAGGTTGAG+AGG - chr1.2:54445885-54445904 MS.gene50560:CDS 55.0%
ATCAATGCTGAGGCGGTACG+CGG - chr1.2:54446419-54446438 MS.gene50560:CDS 55.0%
CATGTTGCCTCCTGCTTGGA+TGG - chr1.2:54446583-54446602 MS.gene50560:CDS 55.0%
CTCCCCGCTGTCTTCACAAT+TGG - chr1.2:54445236-54445255 MS.gene50560:CDS 55.0%
GATGTCTTGGATTCCGGCTC+CGG + chr1.2:54445099-54445118 None:intergenic 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1.2:54445704-54445723 MS.gene50560:intron 55.0%
GTTATTGCGATGCAGAGGGC+TGG - chr1.2:54445686-54445705 MS.gene50560:intron 55.0%
TACCTGGTGATAACCGGAGC+CGG - chr1.2:54445083-54445102 MS.gene50560:CDS 55.0%
! GAAGAAAGCGGCGTGGACTA+AGG - chr1.2:54445808-54445827 MS.gene50560:CDS 55.0%
! GTGGACTAAGGCAGCTCAAG+TGG - chr1.2:54445820-54445839 MS.gene50560:CDS 55.0%
CACCGGAGAGAGGTCGAAGA+CGG + chr1.2:54445165-54445184 None:intergenic 60.0%
CACCGTCTTCGACCTCTCTC+CGG - chr1.2:54445160-54445179 MS.gene50560:CDS 60.0%
CAGGCATGTTGCCTCCTGCT+TGG - chr1.2:54446579-54446598 MS.gene50560:CDS 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1.2:54445382-54445401 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1.2:54445379-54445398 MS.gene50560:CDS 60.0%
GAGGGCTGGAGAGAGTGACA+AGG - chr1.2:54445700-54445719 MS.gene50560:intron 60.0%
GGAAGCTGAGTTGCAGGGTG+AGG - chr1.2:54445877-54445896 MS.gene50560:CDS 60.0%
GGCTGGAGAGAGTGACAAGG+AGG - chr1.2:54445703-54445722 MS.gene50560:intron 60.0%
TGGCGAAGAAGAAAGCGGCG+TGG - chr1.2:54445801-54445820 MS.gene50560:CDS 60.0%
TTCCGGCTCCGGTTATCACC+AGG + chr1.2:54445088-54445107 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 54445056 54446631 54445056 ID=MS.gene50560
chr1.2 mRNA 54445056 54446631 54445056 ID=MS.gene50560.t1;Parent=MS.gene50560
chr1.2 exon 54445705 54446631 54445705 ID=MS.gene50560.t1.exon1;Parent=MS.gene50560.t1
chr1.2 CDS 54445705 54446631 54445705 ID=cds.MS.gene50560.t1;Parent=MS.gene50560.t1
chr1.2 exon 54445056 54445565 54445056 ID=MS.gene50560.t1.exon2;Parent=MS.gene50560.t1
chr1.2 CDS 54445056 54445565 54445056 ID=cds.MS.gene50560.t1;Parent=MS.gene50560.t1
Gene Sequence

>MS.gene50560

ATGTACAGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCCGGAATCCAAGACATCAAACTTGCAAAGAAATCATGGATTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCTCCGGTGAACTATACCTTCGAAGTTCAAGCCATGAGTGCCGAAAAACTCCCTTTCATTCTCCCCGCTGTCTTCACAATTGGTCCTCGTGTTGACGATGACGAAAGCCTCCTCAAATACGCTAAACTGATTTCCCCTCATGATAAACTCTCGAATCACGTTAAGGAACTCGTTCAAGGAATCATCGAAGGTGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAAAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAGTTGAATCAATTCGGGTTATTGATTTACAACGCGAATGTTAAGCAATTGGTGGATGTTCCTGGTCATGAATATTTCTCATATTTAGGGCAAAAGACGCAAATGGAAGCAGCAAATCAAGCTAGGGTTGACGTGTCAGAAGCTAAGATGAAAGGTGAAGTTGGTTCGAAATCTAGGGAAGGACAAACACTGCAGAATGCAGCGAAAATTGATGCAGAGACAAAAGTTATTGCGATGCAGAGGGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCAGAGTTGGCGAAGAAGAAAGCGGCGTGGACTAAGGCAGCTCAAGTGGCTGAAGTCGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCTGAGTTGCAGGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTGAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTTAGTCCAATATAACTCCTTCTTTCATTCATTAATTATTATTATTATTATTATTATTATTCAAATTGTTTTACTAGATGAATGATTTTCAATGTTTATTTTTTAAGTACTGGTTGAAATTCTGGATGGTTTACTTTAGGTGCAAGAGGCTAACTGGGAATTATACAAGAAACAAAAAGAAGCAGAAGCAATTCTGTATGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGGCAGATGCAACATTTTATGCGCGCAAGCAAGCAGCTGAAGCAGAGTTATACGCAAAGAAAAAAGAGGCAGAAGGGATTGTGACAATTGGACAAGCTCAAGGAGTGTCCGTAAGTATACTTCTCAATGCACTTGGAAACGACTATACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATCAATGCTGAGGCGGTACGCGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCGGAATAACCGAAGGTTCTATGGGTATGAAAGAGGTTGCCGGTGTTTACAAGATGCTGCCACCTTTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTTAA
Protein sequence

>MS.gene50560.t1

MYRVAKASEYLVITGAGIQDIKLAKKSWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVDDDESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVSEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKADLLSKASVEYETKVQEANWELYKKQKEAEAILYEKKAEAEAQKALADATFYARKQAAEAELYAKKKEAEGIVTIGQAQGVSVSILLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGGITEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSS