Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32121.t1 | RHN80248.1 | 98.3 | 474 | 8 | 0 | 1 | 474 | 1 | 474 | 2.50E-183 | 651.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32121.t1 | D2XNQ8 | 91.2 | 478 | 38 | 1 | 1 | 474 | 1 | 478 | 2.4e-174 | 613.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32121.t1 | A0A072VLE3 | 97.5 | 474 | 12 | 0 | 1 | 474 | 1 | 474 | 1.8e-183 | 651.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32121.t1 | MTR_1g073400 | 97.890 | 474 | 10 | 0 | 1 | 474 | 1 | 474 | 0.0 | 947 |
| MS.gene32121.t1 | MTR_3g106480 | 91.632 | 478 | 36 | 1 | 1 | 474 | 1 | 478 | 0.0 | 894 |
| MS.gene32121.t1 | MTR_1g071130 | 91.579 | 475 | 13 | 2 | 1 | 474 | 1 | 449 | 0.0 | 875 |
| MS.gene32121.t1 | MTR_1g115145 | 93.319 | 479 | 21 | 4 | 1 | 474 | 1 | 473 | 0.0 | 872 |
| MS.gene32121.t1 | MTR_3g106485 | 91.983 | 474 | 38 | 0 | 1 | 474 | 1 | 474 | 0.0 | 867 |
| MS.gene32121.t1 | MTR_3g106420 | 91.004 | 478 | 39 | 1 | 1 | 474 | 3 | 480 | 0.0 | 861 |
| MS.gene32121.t1 | MTR_1g083190 | 89.451 | 474 | 46 | 1 | 1 | 474 | 3 | 472 | 0.0 | 832 |
| MS.gene32121.t1 | MTR_3g106430 | 91.332 | 473 | 41 | 0 | 1 | 473 | 1 | 473 | 0.0 | 831 |
| MS.gene32121.t1 | MTR_3g106470 | 80.294 | 477 | 34 | 3 | 1 | 473 | 32 | 452 | 0.0 | 724 |
| MS.gene32121.t1 | MTR_8g063830 | 80.172 | 464 | 49 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene32121.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 1.28e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32121.t1 | AT5G25260 | 74.895 | 474 | 103 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene32121.t1 | AT5G25250 | 75.319 | 470 | 104 | 2 | 1 | 469 | 1 | 459 | 0.0 | 726 |
| MS.gene32121.t1 | AT5G64870 | 71.398 | 472 | 120 | 3 | 2 | 469 | 3 | 463 | 0.0 | 655 |
Find 113 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.2:+56338063 | MS.gene32121:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.2:+56339513 | MS.gene32121:CDS |
| CGGAATAACGGAAGGATCTA+TGG | 0.261895 | 1.2:+56339547 | MS.gene32121:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.2:+56338391 | MS.gene32121:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.2:+56339440 | MS.gene32121:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.2:+56338064 | MS.gene32121:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.2:+56338151 | MS.gene32121:CDS |
| TTTAGGTACAAGAGGCTAAC+TGG | 0.315931 | 1.2:+56339186 | MS.gene32121:intron |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.2:-56339518 | None:intergenic |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.327316 | 1.2:+56337772 | MS.gene32121:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.2:+56338253 | MS.gene32121:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.2:+56339640 | MS.gene32121:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.2:-56338005 | None:intergenic |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1.2:+56339420 | MS.gene32121:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.2:+56339521 | MS.gene32121:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.2:+56338026 | MS.gene32121:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.2:+56337991 | MS.gene32121:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.2:+56337578 | None:intergenic |
| TGGTCGTCGTGTTGACGATC+AGG | 0.409576 | 1.2:+56337792 | MS.gene32121:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.2:+56337653 | MS.gene32121:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.2:+56337992 | MS.gene32121:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.2:+56337613 | MS.gene32121:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.2:-56337632 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.2:+56339238 | MS.gene32121:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.2:-56337822 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.2:+56338080 | MS.gene32121:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.2:+56339617 | MS.gene32121:CDS |
| GAAGAAAGCAGCTTGGACTA+AGG | 0.496411 | 1.2:+56338344 | MS.gene32121:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.2:+56338100 | MS.gene32121:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.2:+56338392 | MS.gene32121:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.2:+56339636 | MS.gene32121:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.2:+56337921 | MS.gene32121:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.2:+56337603 | MS.gene32121:CDS |
| GACTAATGGAGGCGGAATAA+CGG | 0.515434 | 1.2:+56339535 | MS.gene32121:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.2:+56338266 | MS.gene32121:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.2:+56338138 | MS.gene32121:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.2:+56337868 | MS.gene32121:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.2:-56339625 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.2:+56339641 | MS.gene32121:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.2:+56338222 | MS.gene32121:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.2:+56337619 | MS.gene32121:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.2:+56338039 | MS.gene32121:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.2:-56337932 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.2:+56338217 | MS.gene32121:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.2:+56338368 | MS.gene32121:CDS |
| AGGATCTATGGGCATGAAAG+AGG | 0.537670 | 1.2:+56339559 | MS.gene32121:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.2:-56337621 | None:intergenic |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.2:+56339460 | MS.gene32121:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.2:-56337614 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.2:+56338317 | MS.gene32121:CDS |
| GCAGAAGGGATTGTGACACT+TGG | 0.546780 | 1.2:+56339353 | MS.gene32121:CDS |
| CGACCAATTGTGAAGACAGC+GGG | 0.547247 | 1.2:-56337775 | None:intergenic |
| ATGGGCATGAAAGAGGTTGC+TGG | 0.547263 | 1.2:+56339566 | MS.gene32121:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.2:+56337696 | MS.gene32121:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.2:-56339650 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.2:+56338302 | MS.gene32121:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.561126 | 1.2:+56338356 | MS.gene32121:CDS |
| TTGGATGGTTTAGGTACAAG+AGG | 0.561865 | 1.2:+56339178 | MS.gene32121:intron |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.2:+56337654 | MS.gene32121:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.2:+56338029 | MS.gene32121:CDS |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.2:-56338418 | None:intergenic |
| GGAATAACGGAAGGATCTAT+GGG | 0.567283 | 1.2:+56339548 | MS.gene32121:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.567585 | 1.2:+56339524 | MS.gene32121:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.2:+56339398 | MS.gene32121:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.2:+56337915 | MS.gene32121:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.2:-56337715 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.2:-56337682 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.2:-56337708 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.2:+56338421 | MS.gene32121:CDS |
| TTAGGTACAAGAGGCTAACT+GGG | 0.579786 | 1.2:+56339187 | MS.gene32121:intron |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.2:+56338152 | MS.gene32121:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.2:+56339365 | MS.gene32121:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.2:-56337819 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.2:+56338296 | MS.gene32121:CDS |
| AAACGACTACACAGCTCTAA+GGG | 0.592700 | 1.2:+56339421 | MS.gene32121:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.2:+56338408 | MS.gene32121:CDS |
| CAGAAGGGATTGTGACACTT+GGG | 0.598815 | 1.2:+56339354 | MS.gene32121:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.2:+56339244 | MS.gene32121:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.2:-56337728 | None:intergenic |
| AGTATTTGGACTAATGGAGG+CGG | 0.605183 | 1.2:+56339527 | MS.gene32121:CDS |
| TGGCGAAGAAGAAAGCAGCT+TGG | 0.608119 | 1.2:+56338337 | MS.gene32121:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.2:+56338240 | MS.gene32121:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.2:+56337880 | MS.gene32121:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.2:+56338129 | MS.gene32121:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.2:+56338239 | MS.gene32121:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.2:-56337698 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.2:-56337763 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.2:+56338101 | MS.gene32121:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.2:+56337881 | MS.gene32121:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.2:+56338218 | MS.gene32121:CDS |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.635413 | 1.2:+56338156 | MS.gene32121:CDS |
| ATCAATGCTGAGGCAGTACG+TGG | 0.635980 | 1.2:+56339488 | MS.gene32121:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.2:-56338057 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.2:+56337579 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.2:+56338497 | MS.gene32121:CDS |
| GAAAGCAGCTTGGACTAAGG+CGG | 0.646507 | 1.2:+56338347 | MS.gene32121:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.2:+56338236 | MS.gene32121:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.2:+56338413 | MS.gene32121:CDS |
| TTGGCTCGAAATCTAGGGAA+GGG | 0.650991 | 1.2:+56338157 | MS.gene32121:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.2:+56337855 | MS.gene32121:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.2:-56339605 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.2:+56339443 | MS.gene32121:CDS |
| AATGGAGGCGGAATAACGGA+AGG | 0.659657 | 1.2:+56339539 | MS.gene32121:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.2:-56339608 | None:intergenic |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.2:+56338383 | MS.gene32121:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.2:-56339647 | None:intergenic |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.2:-56337847 | None:intergenic |
| GATGGCTAAGATCAATGCTG+AGG | 0.682349 | 1.2:+56339478 | MS.gene32121:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.2:+56338110 | MS.gene32121:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.2:-56337681 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.2:+56337882 | MS.gene32121:CDS |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.2:-56337915 | None:intergenic |
| ACGACCAATTGTGAAGACAG+CGG | 0.739519 | 1.2:-56337776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTTTTACTTTTAAATT+TGG | - | chr1.2:56339094-56339113 | None:intergenic | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.2:56338064-56338083 | MS.gene32121:CDS | 15.0% |
| !! | CATTATAAAACTAAATCATA+TGG | + | chr1.2:56338843-56338862 | MS.gene32121:intron | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | + | chr1.2:56339147-56339166 | MS.gene32121:intron | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | + | chr1.2:56338670-56338689 | MS.gene32121:intron | 15.0% |
| !!! | TGTTCTAAATTAATTTTGTT+AGG | + | chr1.2:56338899-56338918 | MS.gene32121:intron | 15.0% |
| !! | AAAGTAAAACATAACAAAGT+AGG | + | chr1.2:56339100-56339119 | MS.gene32121:intron | 20.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.2:56338063-56338082 | MS.gene32121:CDS | 20.0% |
| !! | TTAAAAAAACGATTGACATA+TGG | + | chr1.2:56339021-56339040 | MS.gene32121:intron | 20.0% |
| !!! | GTTTTACTTTTAAATTTGGT+TGG | - | chr1.2:56339090-56339109 | None:intergenic | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1.2:56338785-56338804 | MS.gene32121:intron | 20.0% |
| !!! | TCAATGTAGTTAAAGTTTTT+TGG | + | chr1.2:56338704-56338723 | MS.gene32121:intron | 20.0% |
| !!! | TTAATATGTTATATGGACTA+TGG | + | chr1.2:56338767-56338786 | MS.gene32121:intron | 20.0% |
| ! | AAAGAAGAGATATATTTGCA+TGG | - | chr1.2:56338528-56338547 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr1.2:56339521-56339540 | MS.gene32121:CDS | 25.0% |
| ! | ACAAAATAATAGCAAGCAAA+GGG | - | chr1.2:56338950-56338969 | None:intergenic | 25.0% |
| ! | ATTGACATATGGTATGTAAA+TGG | + | chr1.2:56339032-56339051 | MS.gene32121:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.2:56339521-56339540 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.2:56339513-56339532 | MS.gene32121:CDS | 25.0% |
| !!! | GCTATTATTTTGTGTACTTT+TGG | + | chr1.2:56338957-56338976 | MS.gene32121:intron | 25.0% |
| !!! | TTAAGTACTGGTTGAAATTT+TGG | + | chr1.2:56339159-56339178 | MS.gene32121:intron | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.2:56337825-56337844 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | + | chr1.2:56339524-56339543 | MS.gene32121:CDS | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.2:56337654-56337673 | MS.gene32121:CDS | 30.0% | |
| CACAAAATAATAGCAAGCAA+AGG | - | chr1.2:56338951-56338970 | None:intergenic | 30.0% | |
| GGCAAATAGATTGAAGAATA+TGG | + | chr1.2:56339053-56339072 | MS.gene32121:intron | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.2:56338060-56338079 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.2:56337653-56337672 | MS.gene32121:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.2:56338008-56338027 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.2:56339440-56339459 | MS.gene32121:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.2:56339443-56339462 | MS.gene32121:CDS | 30.0% |
| ! | GTTGAAATTTTGGATGGTTT+AGG | + | chr1.2:56339169-56339188 | MS.gene32121:intron | 30.0% |
| !! | AGCAAGTGCTATGTTTTATT+TGG | + | chr1.2:56338996-56339015 | MS.gene32121:intron | 30.0% |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.2:56337992-56338011 | MS.gene32121:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.2:56339238-56339257 | MS.gene32121:CDS | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | + | chr1.2:56339339-56339358 | MS.gene32121:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.2:56337991-56338010 | MS.gene32121:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.2:56338026-56338045 | MS.gene32121:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.2:56338218-56338237 | MS.gene32121:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.2:56339331-56339350 | MS.gene32121:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.2:56337855-56337874 | MS.gene32121:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.2:56337881-56337900 | MS.gene32121:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.2:56337850-56337869 | None:intergenic | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.2:56337755-56337774 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.2:56338517-56338536 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.2:56338497-56338516 | MS.gene32121:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | - | chr1.2:56339669-56339688 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.2:56338287-56338306 | MS.gene32121:CDS | 35.0% |
| !!! | GTACTGGTTGAAATTTTGGA+TGG | + | chr1.2:56339163-56339182 | MS.gene32121:intron | 35.0% |
| AATGTGCCAAGTCTAAATCG+TGG | + | chr1.2:56338922-56338941 | MS.gene32121:intron | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr1.2:56339398-56339417 | MS.gene32121:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+CGG | + | chr1.2:56339527-56339546 | MS.gene32121:CDS | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.2:56337882-56337901 | MS.gene32121:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.2:56337868-56337887 | MS.gene32121:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.2:56338217-56338236 | MS.gene32121:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.2:56337880-56337899 | MS.gene32121:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.2:56338191-56338210 | MS.gene32121:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | + | chr1.2:56339338-56339357 | MS.gene32121:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.2:56338138-56338157 | MS.gene32121:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.2:56338266-56338285 | MS.gene32121:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.2:56337822-56337841 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.2:56339611-56339630 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.2:56338029-56338048 | MS.gene32121:CDS | 40.0% | |
| TTAGGTACAAGAGGCTAACT+GGG | + | chr1.2:56339187-56339206 | MS.gene32121:intron | 40.0% | |
| TTGGATGGTTTAGGTACAAG+AGG | + | chr1.2:56339178-56339197 | MS.gene32121:intron | 40.0% | |
| TTTAGGTACAAGAGGCTAAC+TGG | + | chr1.2:56339186-56339205 | MS.gene32121:intron | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | + | chr1.2:56339421-56339440 | MS.gene32121:CDS | 40.0% |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.2:56337664-56337683 | MS.gene32121:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.2:56338253-56338272 | MS.gene32121:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.2:56337718-56337737 | None:intergenic | 40.0% |
| ! | GGAATAACGGAAGGATCTAT+GGG | + | chr1.2:56339548-56339567 | MS.gene32121:CDS | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.2:56338080-56338099 | MS.gene32121:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.2:56338152-56338171 | MS.gene32121:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr1.2:56339617-56339636 | MS.gene32121:CDS | 45.0% | |
| ACGACCAATTGTGAAGACAG+CGG | - | chr1.2:56337779-56337798 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.2:56337731-56337750 | None:intergenic | 45.0% | |
| AGGATCTATGGGCATGAAAG+AGG | + | chr1.2:56339559-56339578 | MS.gene32121:CDS | 45.0% | |
| AGGGATCCACGATTTAGACT+TGG | - | chr1.2:56338931-56338950 | None:intergenic | 45.0% | |
| CAGAAGGGATTGTGACACTT+GGG | + | chr1.2:56339354-56339373 | MS.gene32121:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | + | chr1.2:56339420-56339439 | MS.gene32121:CDS | 45.0% | |
| GAAGAAAGCAGCTTGGACTA+AGG | + | chr1.2:56338344-56338363 | MS.gene32121:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.2:56338296-56338315 | MS.gene32121:CDS | 45.0% | |
| GACTAATGGAGGCGGAATAA+CGG | + | chr1.2:56339535-56339554 | MS.gene32121:CDS | 45.0% | |
| GATGGCTAAGATCAATGCTG+AGG | + | chr1.2:56339478-56339497 | MS.gene32121:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.2:56338129-56338148 | MS.gene32121:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.2:56339244-56339263 | MS.gene32121:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.2:56339608-56339627 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | + | chr1.2:56339460-56339479 | MS.gene32121:CDS | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.2:56337931-56337950 | MS.gene32121:CDS | 45.0% |
| ! | CGGAATAACGGAAGGATCTA+TGG | + | chr1.2:56339547-56339566 | MS.gene32121:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.2:56337935-56337954 | None:intergenic | 45.0% |
| ! | TTGGCTCGAAATCTAGGGAA+GGG | + | chr1.2:56338157-56338176 | MS.gene32121:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.2:56338151-56338170 | MS.gene32121:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.2:56338392-56338411 | MS.gene32121:CDS | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+TGG | + | chr1.2:56338760-56338779 | MS.gene32121:intron | 5.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.2:56337766-56337785 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.2:56337685-56337704 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.2:56337684-56337703 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.2:56337711-56337730 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.2:56338421-56338440 | MS.gene32121:CDS | 50.0% | |
| ATCAATGCTGAGGCAGTACG+TGG | + | chr1.2:56339488-56339507 | MS.gene32121:CDS | 50.0% | |
| ATGGGCATGAAAGAGGTTGC+TGG | + | chr1.2:56339566-56339585 | MS.gene32121:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.2:56339641-56339660 | MS.gene32121:CDS | 50.0% | |
| CGACCAATTGTGAAGACAGC+GGG | - | chr1.2:56337778-56337797 | None:intergenic | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.2:56338421-56338440 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.2:56337772-56337791 | MS.gene32121:CDS | 50.0% | |
| GAAAGCAGCTTGGACTAAGG+CGG | + | chr1.2:56338347-56338366 | MS.gene32121:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.2:56338110-56338129 | MS.gene32121:CDS | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | - | chr1.2:56339653-56339672 | None:intergenic | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.2:56337635-56337654 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr1.2:56339628-56339647 | None:intergenic | 50.0% | |
| GCAGAAGGGATTGTGACACT+TGG | + | chr1.2:56339353-56339372 | MS.gene32121:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.2:56338101-56338120 | MS.gene32121:CDS | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.2:56338317-56338336 | MS.gene32121:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr1.2:56339365-56339384 | MS.gene32121:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.2:56338222-56338241 | MS.gene32121:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.2:56337613-56337632 | MS.gene32121:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.2:56337617-56337636 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.2:56337921-56337940 | MS.gene32121:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.2:56338100-56338119 | MS.gene32121:CDS | 50.0% | |
| TGGCGAAGAAGAAAGCAGCT+TGG | + | chr1.2:56338337-56338356 | MS.gene32121:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.2:56338039-56338058 | MS.gene32121:CDS | 50.0% |
| ! | AATGGAGGCGGAATAACGGA+AGG | + | chr1.2:56339539-56339558 | MS.gene32121:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.2:56338391-56338410 | MS.gene32121:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.2:56337603-56337622 | MS.gene32121:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.2:56337746-56337765 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.2:56338156-56338175 | MS.gene32121:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.2:56338302-56338321 | MS.gene32121:CDS | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | - | chr1.2:56339650-56339669 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.2:56338383-56338402 | MS.gene32121:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.2:56339640-56339659 | MS.gene32121:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.2:56338408-56338427 | MS.gene32121:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.2:56338240-56338259 | MS.gene32121:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.2:56337619-56337638 | MS.gene32121:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.2:56337624-56337643 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.2:56338356-56338375 | MS.gene32121:CDS | 55.0% | |
| ! | TGGTCGTCGTGTTGACGATC+AGG | + | chr1.2:56337792-56337811 | MS.gene32121:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.2:56337701-56337720 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.2:56337696-56337715 | MS.gene32121:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr1.2:56339636-56339655 | MS.gene32121:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.2:56337918-56337937 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.2:56337915-56337934 | MS.gene32121:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.2:56338236-56338255 | MS.gene32121:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.2:56338413-56338432 | MS.gene32121:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.2:56338368-56338387 | MS.gene32121:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.2:56338239-56338258 | MS.gene32121:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 56337592 | 56339688 | 56337592 | ID=MS.gene32121 |
| chr1.2 | mRNA | 56337592 | 56339688 | 56337592 | ID=MS.gene32121.t1;Parent=MS.gene32121 |
| chr1.2 | exon | 56337592 | 56338518 | 56337592 | ID=MS.gene32121.t1.exon1;Parent=MS.gene32121.t1 |
| chr1.2 | CDS | 56337592 | 56338518 | 56337592 | ID=cds.MS.gene32121.t1;Parent=MS.gene32121.t1 |
| chr1.2 | exon | 56339191 | 56339688 | 56339191 | ID=MS.gene32121.t1.exon2;Parent=MS.gene32121.t1 |
| chr1.2 | CDS | 56339191 | 56339688 | 56339191 | ID=cds.MS.gene32121.t1;Parent=MS.gene32121.t1 |
| Gene Sequence |
| Protein sequence |
