Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037383.t1 | RHN80248.1 | 94.6 | 478 | 22 | 1 | 1 | 478 | 1 | 474 | 2.70E-172 | 615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037383.t1 | D2XNQ8 | 89.7 | 478 | 49 | 0 | 1 | 478 | 1 | 478 | 4.7e-170 | 599.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037383.t1 | A0A396JVK3 | 94.6 | 478 | 22 | 1 | 1 | 478 | 1 | 474 | 1.9e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037383.t1 | MTR_1g073400 | 96.025 | 478 | 15 | 1 | 1 | 478 | 1 | 474 | 0.0 | 931 |
| MS.gene037383.t1 | MTR_3g106480 | 91.841 | 478 | 39 | 0 | 1 | 478 | 1 | 478 | 0.0 | 902 |
| MS.gene037383.t1 | MTR_1g115145 | 94.990 | 479 | 17 | 3 | 1 | 478 | 1 | 473 | 0.0 | 892 |
| MS.gene037383.t1 | MTR_1g071130 | 90.795 | 478 | 15 | 2 | 1 | 478 | 1 | 449 | 0.0 | 877 |
| MS.gene037383.t1 | MTR_3g106485 | 92.050 | 478 | 34 | 1 | 1 | 478 | 1 | 474 | 0.0 | 870 |
| MS.gene037383.t1 | MTR_3g106420 | 91.423 | 478 | 41 | 0 | 1 | 478 | 3 | 480 | 0.0 | 868 |
| MS.gene037383.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 1 | 1 | 477 | 1 | 473 | 0.0 | 834 |
| MS.gene037383.t1 | MTR_1g083190 | 88.912 | 478 | 45 | 1 | 1 | 478 | 3 | 472 | 0.0 | 834 |
| MS.gene037383.t1 | MTR_3g106470 | 81.132 | 477 | 34 | 2 | 1 | 477 | 32 | 452 | 0.0 | 738 |
| MS.gene037383.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 671 |
| MS.gene037383.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 6.24e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037383.t1 | AT5G25260 | 74.895 | 474 | 107 | 2 | 1 | 474 | 1 | 462 | 0.0 | 731 |
| MS.gene037383.t1 | AT5G25250 | 74.841 | 473 | 105 | 2 | 1 | 473 | 1 | 459 | 0.0 | 724 |
| MS.gene037383.t1 | AT5G64870 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 655 |
Find 111 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103276 | 1.3:-77754679 | MS.gene037383:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.3:-77753653 | MS.gene037383:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.3:-77754351 | MS.gene037383:CDS |
| CAAAATAGTCGAAGGTTCTA+TGG | 0.275996 | 1.3:-77753607 | MS.gene037383:CDS |
| GTGAAGTTGGTTCGAAATCT+AGG | 0.296293 | 1.3:-77754591 | MS.gene037383:CDS |
| AGGGATAACTTGATGATAAA+TGG | 0.301878 | 1.3:-77753726 | MS.gene037383:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.304701 | 1.3:-77754678 | MS.gene037383:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.3:+77753648 | None:intergenic |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.3:-77754489 | MS.gene037383:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 1.3:-77753980 | MS.gene037383:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 1.3:-77753514 | MS.gene037383:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 1.3:-77754751 | MS.gene037383:CDS |
| GAAACGACTACACAGCTCTA+AGG | 0.361629 | 1.3:-77753746 | MS.gene037383:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.3:-77753645 | MS.gene037383:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:-77754716 | MS.gene037383:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 1.3:+77755104 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 1.3:+77755110 | None:intergenic |
| ATCAAAATCCAACAATGTAC+AGG | 0.419506 | 1.3:-77755164 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.422566 | 1.3:-77754703 | MS.gene037383:CDS |
| CTTCCTGCGGTCTTCACAAT+CGG | 0.430548 | 1.3:-77754970 | MS.gene037383:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.3:-77755129 | MS.gene037383:CDS |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 1.3:-77754750 | MS.gene037383:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 1.3:-77754398 | MS.gene037383:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 1.3:-77755089 | MS.gene037383:CDS |
| AGCAATTCTGTACGAGAAGA+AGG | 0.472126 | 1.3:-77753928 | MS.gene037383:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.473661 | 1.3:+77754920 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.3:-77753537 | MS.gene037383:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 1.3:+77754810 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.3:-77754642 | MS.gene037383:CDS |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 1.3:-77754525 | MS.gene037383:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.3:-77754350 | MS.gene037383:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.3:-77753518 | MS.gene037383:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.3:-77754821 | MS.gene037383:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.3:-77755139 | MS.gene037383:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 1.3:-77754604 | MS.gene037383:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 1.3:-77754520 | MS.gene037383:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.3:-77754476 | MS.gene037383:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.3:+77753529 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 1.3:-77753513 | MS.gene037383:CDS |
| CTCGTTCAAGGAATCATTGA+AGG | 0.526317 | 1.3:-77754862 | MS.gene037383:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 1.3:-77753588 | MS.gene037383:CDS |
| GCAGAGGGGATCGTGACACT+TGG | 0.529940 | 1.3:-77753813 | MS.gene037383:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.3:-77753642 | MS.gene037383:CDS |
| CACGTCAAGGAACTCGTTCA+AGG | 0.535434 | 1.3:-77754874 | MS.gene037383:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.3:-77753706 | MS.gene037383:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.539596 | 1.3:+77755128 | None:intergenic |
| TGCTCAAGTGGCTGAAGTTG+AGG | 0.540016 | 1.3:-77754374 | MS.gene037383:CDS |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.3:-77754425 | MS.gene037383:CDS |
| CTTGAACGAGTTCCTTGACG+TGG | 0.546546 | 1.3:+77754875 | None:intergenic |
| TATGAGAAATATTCATGCCC+AGG | 0.547602 | 1.3:+77754685 | None:intergenic |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.3:-77755046 | MS.gene037383:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 1.3:+77753504 | None:intergenic |
| TTGGACTAAGGCTGCTCAAG+TGG | 0.551989 | 1.3:-77754386 | MS.gene037383:CDS |
| TTCCGGCTCCGGTTATCACC+AGG | 0.552313 | 1.3:+77755121 | None:intergenic |
| ACTTCGAAGGTGTAGTTCAC+CGG | 0.556605 | 1.3:+77755027 | None:intergenic |
| AAAATAGTCGAAGGTTCTAT+GGG | 0.558316 | 1.3:-77753606 | MS.gene037383:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.3:-77754440 | MS.gene037383:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:-77754713 | MS.gene037383:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 1.3:-77753979 | MS.gene037383:intron |
| AGGTTCTATGGGTATGAAAG+AGG | 0.567548 | 1.3:-77753595 | MS.gene037383:CDS |
| TACCTGGTGATAACCGGAGC+CGG | 0.568923 | 1.3:-77755123 | MS.gene037383:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.3:-77753768 | MS.gene037383:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.3:-77754827 | MS.gene037383:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 1.3:-77753988 | MS.gene037383:intron |
| TGAAGTTGGTTCGAAATCTA+GGG | 0.572755 | 1.3:-77754590 | MS.gene037383:CDS |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.3:+77755060 | None:intergenic |
| AGCAATTGGTGGATGTGCCT+GGG | 0.578490 | 1.3:-77754702 | MS.gene037383:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 1.3:-77753901 | MS.gene037383:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1.3:-77754405 | MS.gene037383:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.586153 | 1.3:+77755014 | None:intergenic |
| ACTGCCTTTCGTTCTTCCTG+CGG | 0.586208 | 1.3:-77754983 | MS.gene037383:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.3:+77754923 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.3:-77754446 | MS.gene037383:CDS |
| GGTTCGAGAGTTTATCATGA+GGG | 0.591190 | 1.3:+77754896 | None:intergenic |
| GGACCGATTGTGAAGACCGC+AGG | 0.592140 | 1.3:+77754967 | None:intergenic |
| AAACGACTACACAGCTCTAA+GGG | 0.597888 | 1.3:-77753745 | MS.gene037383:CDS |
| TCTGTACGAGAAGAAGGCAG+AGG | 0.600808 | 1.3:-77753922 | MS.gene037383:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.3:-77753633 | MS.gene037383:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.3:-77754502 | MS.gene037383:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 1.3:-77754321 | MS.gene037383:CDS |
| GTGACACTTGGAAATGCTCA+AGG | 0.613316 | 1.3:-77753801 | MS.gene037383:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 1.3:-77754334 | MS.gene037383:CDS |
| GAATCAAGCTAGGGTTGATG+TGG | 0.625479 | 1.3:-77754632 | MS.gene037383:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.3:-77754503 | MS.gene037383:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.3:+77755044 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.3:-77754641 | MS.gene037383:CDS |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 1.3:-77754524 | MS.gene037383:CDS |
| GTTCGAGAGTTTATCATGAG+GGG | 0.631767 | 1.3:+77754897 | None:intergenic |
| AGGTGTAGTTCACCGGTGAG+AGG | 0.633284 | 1.3:+77755034 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 1.3:-77753688 | MS.gene037383:CDS |
| AAGACCGCAGGAAGAACGAA+AGG | 0.642924 | 1.3:+77754979 | None:intergenic |
| AATGGAGGCAAAATAGTCGA+AGG | 0.643742 | 1.3:-77753615 | MS.gene037383:CDS |
| GATAACTTGATGATAAATGG+TGG | 0.646098 | 1.3:-77753723 | MS.gene037383:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.3:-77754506 | MS.gene037383:CDS |
| TCAAAATCCAACAATGTACA+GGG | 0.647397 | 1.3:-77755163 | None:intergenic |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 1.3:-77754329 | MS.gene037383:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 1.3:-77754245 | MS.gene037383:intron |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1.3:-77754410 | MS.gene037383:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.3:+77753549 | None:intergenic |
| ATTAATGCTGAGGCAGTACG+TGG | 0.657117 | 1.3:-77753678 | MS.gene037383:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.3:+77753546 | None:intergenic |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 1.3:+77753507 | None:intergenic |
| GTTGGTTCGAAATCTAGGGA+AGG | 0.671440 | 1.3:-77754586 | MS.gene037383:CDS |
| TAAACTCTCGAACCACGTCA+AGG | 0.672629 | 1.3:-77754887 | MS.gene037383:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.672668 | 1.3:-77754613 | MS.gene037383:CDS |
| TGGTTCGAGAGTTTATCATG+AGG | 0.674541 | 1.3:+77754895 | None:intergenic |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.3:-77753630 | MS.gene037383:CDS |
| AGTTGAGGCTGCTAAAGCTG+TGG | 0.689875 | 1.3:-77754359 | MS.gene037383:CDS |
| CTTTCGTGATCGTCAACACG+AGG | 0.690352 | 1.3:+77754946 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.3:+77755061 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.3:+77754827 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr1.3:77753960-77753979 | MS.gene037383:CDS | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | - | chr1.3:77754619-77754638 | MS.gene037383:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr1.3:77754504-77754523 | MS.gene037383:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr1.3:77753959-77753978 | MS.gene037383:CDS | 20.0% |
| !! | GATTATTGTTTAATATTGCA+TGG | - | chr1.3:77754576-77754595 | MS.gene037383:CDS | 20.0% |
| !!! | TTTATTTTTTAAGTACTGGT+TGG | - | chr1.3:77754623-77754642 | MS.gene037383:CDS | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr1.3:77754993-77755012 | MS.gene037383:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.3:77754993-77755012 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr1.3:77754985-77755004 | MS.gene037383:CDS | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | - | chr1.3:77754538-77754557 | MS.gene037383:CDS | 25.0% |
| !!! | TTAAAGTTTTTTGGCATACA+TGG | - | chr1.3:77754547-77754566 | MS.gene037383:CDS | 25.0% |
| AAAATAGTCGAAGGTTCTAT+GGG | - | chr1.3:77755032-77755051 | MS.gene037383:CDS | 30.0% | |
| AAATCAGTTTAGCGTATTTG+AGG | + | chr1.3:77753721-77753740 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | - | chr1.3:77754996-77755015 | MS.gene037383:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr1.3:77754393-77754412 | MS.gene037383:CDS | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr1.3:77753549-77753568 | MS.gene037383:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr1.3:77754429-77754448 | None:intergenic | 30.0% | |
| ! | AGGGATAACTTGATGATAAA+TGG | - | chr1.3:77754912-77754931 | MS.gene037383:CDS | 30.0% |
| ! | GATAACTTGATGATAAATGG+TGG | - | chr1.3:77754915-77754934 | MS.gene037383:CDS | 30.0% |
| ! | GTTTAATATTGCATGGACTA+TGG | - | chr1.3:77754583-77754602 | MS.gene037383:CDS | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr1.3:77753537-77753556 | None:intergenic | 35.0% | |
| CAAAATAGTCGAAGGTTCTA+TGG | - | chr1.3:77755031-77755050 | MS.gene037383:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.3:77753922-77753941 | MS.gene037383:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr1.3:77754803-77754822 | MS.gene037383:CDS | 35.0% | |
| TATGAGAAATATTCATGCCC+AGG | + | chr1.3:77753956-77753975 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr1.3:77753560-77753579 | MS.gene037383:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | + | chr1.3:77755153-77755172 | None:intergenic | 35.0% |
| ! | TTTAGGGCAAAAAACGCAAA+TGG | - | chr1.3:77753976-77753995 | MS.gene037383:CDS | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr1.3:77753888-77753907 | MS.gene037383:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr1.3:77753887-77753906 | MS.gene037383:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr1.3:77754183-77754202 | MS.gene037383:intron | 35.0% |
| !! | TGAAGTTGGTTCGAAATCTA+GGG | - | chr1.3:77754048-77754067 | MS.gene037383:intron | 35.0% |
| !! | TTAAGTACTGGTTGGAATTC+TGG | - | chr1.3:77754631-77754650 | MS.gene037383:CDS | 35.0% |
| AATGGAGGCAAAATAGTCGA+AGG | - | chr1.3:77755023-77755042 | MS.gene037383:CDS | 40.0% | |
| AGCAATTCTGTACGAGAAGA+AGG | - | chr1.3:77754710-77754729 | MS.gene037383:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr1.3:77755043-77755062 | MS.gene037383:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr1.3:77754870-77754889 | MS.gene037383:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr1.3:77754811-77754830 | MS.gene037383:CDS | 40.0% | |
| CTCGTTCAAGGAATCATTGA+AGG | - | chr1.3:77753776-77753795 | MS.gene037383:CDS | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr1.3:77754114-77754133 | MS.gene037383:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr1.3:77754950-77754969 | MS.gene037383:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr1.3:77754810-77754829 | MS.gene037383:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr1.3:77754034-77754053 | MS.gene037383:intron | 40.0% | |
| GGTTCGAGAGTTTATCATGA+GGG | + | chr1.3:77753745-77753764 | None:intergenic | 40.0% | |
| GTTCGAGAGTTTATCATGAG+GGG | + | chr1.3:77753744-77753763 | None:intergenic | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr1.3:77754162-77754181 | MS.gene037383:intron | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | + | chr1.3:77753718-77753737 | None:intergenic | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | + | chr1.3:77755095-77755114 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.3:77753925-77753944 | MS.gene037383:CDS | 40.0% | |
| TGGTTCGAGAGTTTATCATG+AGG | + | chr1.3:77753746-77753765 | None:intergenic | 40.0% | |
| ! | AAACGACTACACAGCTCTAA+GGG | - | chr1.3:77754893-77754912 | MS.gene037383:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | - | chr1.3:77754149-77754168 | MS.gene037383:intron | 40.0% |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr1.3:77753827-77753846 | MS.gene037383:CDS | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr1.3:77753831-77753850 | None:intergenic | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr1.3:77754413-77754432 | None:intergenic | 40.0% |
| !! | GTGAAGTTGGTTCGAAATCT+AGG | - | chr1.3:77754047-77754066 | MS.gene037383:intron | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr1.3:77755101-77755120 | MS.gene037383:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | - | chr1.3:77755008-77755027 | MS.gene037383:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr1.3:77753627-77753646 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr1.3:77755050-77755069 | MS.gene037383:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+TGG | - | chr1.3:77754960-77754979 | MS.gene037383:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr1.3:77754113-77754132 | MS.gene037383:intron | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr1.3:77754809-77754828 | MS.gene037383:CDS | 45.0% | |
| GAAACGACTACACAGCTCTA+AGG | - | chr1.3:77754892-77754911 | MS.gene037383:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.3:77754192-77754211 | MS.gene037383:intron | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr1.3:77754659-77754678 | MS.gene037383:CDS | 45.0% | |
| GTGACACTTGGAAATGCTCA+AGG | - | chr1.3:77754837-77754856 | MS.gene037383:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr1.3:77754025-77754044 | MS.gene037383:intron | 45.0% | |
| GTTGGAATTCTGGATGGTGT+AGG | - | chr1.3:77754641-77754660 | MS.gene037383:CDS | 45.0% | |
| TAAACTCTCGAACCACGTCA+AGG | - | chr1.3:77753751-77753770 | MS.gene037383:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | + | chr1.3:77755092-77755111 | None:intergenic | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | - | chr1.3:77755005-77755024 | MS.gene037383:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr1.3:77754932-77754951 | MS.gene037383:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr1.3:77754658-77754677 | MS.gene037383:CDS | 45.0% | |
| ! | ACTTCGAAGGTGTAGTTCAC+CGG | + | chr1.3:77753614-77753633 | None:intergenic | 45.0% |
| ! | ATTTTATGCGCGCAAGCAAG+CGG | - | chr1.3:77754770-77754789 | MS.gene037383:CDS | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr1.3:77754228-77754247 | MS.gene037383:intron | 45.0% |
| !! | AGGCAGTTTTTCAGCACTCA+TGG | + | chr1.3:77753642-77753661 | None:intergenic | 45.0% |
| !! | GAATCAAGCTAGGGTTGATG+TGG | - | chr1.3:77754006-77754025 | MS.gene037383:intron | 45.0% |
| !! | GTACTGGTTGGAATTCTGGA+TGG | - | chr1.3:77754635-77754654 | MS.gene037383:CDS | 45.0% |
| !! | GTTGGTTCGAAATCTAGGGA+AGG | - | chr1.3:77754052-77754071 | MS.gene037383:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr1.3:77754288-77754307 | MS.gene037383:CDS | 45.0% |
| !! | ATAATAAATAAATAAATGAA+AGG | + | chr1.3:77754445-77754464 | None:intergenic | 5.0% |
| AAGACCGCAGGAAGAACGAA+AGG | + | chr1.3:77753662-77753681 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr1.3:77753581-77753600 | None:intergenic | 50.0% | |
| ACTGCCTTTCGTTCTTCCTG+CGG | - | chr1.3:77753655-77753674 | MS.gene037383:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr1.3:77753580-77753599 | None:intergenic | 50.0% | |
| AGTTGAGGCTGCTAAAGCTG+TGG | - | chr1.3:77754279-77754298 | MS.gene037383:CDS | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr1.3:77754317-77754336 | MS.gene037383:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr1.3:77755125-77755144 | MS.gene037383:CDS | 50.0% | |
| CACGTCAAGGAACTCGTTCA+AGG | - | chr1.3:77753764-77753783 | MS.gene037383:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr1.3:77754304-77754323 | MS.gene037383:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr1.3:77754650-77754669 | MS.gene037383:CDS | 50.0% | |
| CTTCCTGCGGTCTTCACAAT+CGG | - | chr1.3:77753668-77753687 | MS.gene037383:CDS | 50.0% | |
| CTTGAACGAGTTCCTTGACG+TGG | + | chr1.3:77753766-77753785 | None:intergenic | 50.0% | |
| CTTTCGTGATCGTCAACACG+AGG | + | chr1.3:77753695-77753714 | None:intergenic | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr1.3:77755137-77755156 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr1.3:77755112-77755131 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr1.3:77753997-77754016 | MS.gene037383:intron | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | - | chr1.3:77754213-77754232 | MS.gene037383:intron | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | - | chr1.3:77753509-77753528 | MS.gene037383:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | + | chr1.3:77753513-77753532 | None:intergenic | 50.0% | |
| TCTGTACGAGAAGAAGGCAG+AGG | - | chr1.3:77754716-77754735 | MS.gene037383:CDS | 50.0% | |
| TGCTCAAGTGGCTGAAGTTG+AGG | - | chr1.3:77754264-77754283 | MS.gene037383:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr1.3:77753817-77753836 | MS.gene037383:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr1.3:77753996-77754015 | MS.gene037383:intron | 50.0% | |
| TTGGACTAAGGCTGCTCAAG+TGG | - | chr1.3:77754252-77754271 | MS.gene037383:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr1.3:77753935-77753954 | MS.gene037383:CDS | 50.0% |
| ! | AGCAATTGGTGGATGTGCCT+GGG | - | chr1.3:77753936-77753955 | MS.gene037383:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr1.3:77754287-77754306 | MS.gene037383:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | - | chr1.3:77754240-77754259 | MS.gene037383:intron | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr1.3:77754737-77754756 | MS.gene037383:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | - | chr1.3:77753499-77753518 | MS.gene037383:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr1.3:77754198-77754217 | MS.gene037383:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr1.3:77755134-77755153 | None:intergenic | 55.0% | |
| AGGTGTAGTTCACCGGTGAG+AGG | + | chr1.3:77753607-77753626 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr1.3:77755124-77755143 | MS.gene037383:CDS | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr1.3:77753531-77753550 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr1.3:77754136-77754155 | MS.gene037383:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr1.3:77754309-77754328 | MS.gene037383:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr1.3:77754118-77754137 | MS.gene037383:intron | 55.0% | |
| TACCTGGTGATAACCGGAGC+CGG | - | chr1.3:77753515-77753534 | MS.gene037383:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | - | chr1.3:77754233-77754252 | MS.gene037383:intron | 55.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr1.3:77753597-77753616 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr1.3:77753592-77753611 | MS.gene037383:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr1.3:77755120-77755139 | MS.gene037383:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr1.3:77753814-77753833 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr1.3:77753811-77753830 | MS.gene037383:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr1.3:77754132-77754151 | MS.gene037383:intron | 60.0% | |
| GCAGAGGGGATCGTGACACT+TGG | - | chr1.3:77754825-77754844 | MS.gene037383:CDS | 60.0% | |
| GGACCGATTGTGAAGACCGC+AGG | + | chr1.3:77753674-77753693 | None:intergenic | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr1.3:77754135-77754154 | MS.gene037383:intron | 60.0% | |
| TTCCGGCTCCGGTTATCACC+AGG | + | chr1.3:77753520-77753539 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 77753488 | 77755172 | 77753488 | ID=MS.gene037383 |
| chr1.3 | mRNA | 77753488 | 77755172 | 77753488 | ID=MS.gene037383.t1;Parent=MS.gene037383 |
| chr1.3 | exon | 77754246 | 77755172 | 77754246 | ID=MS.gene037383.t1.exon1;Parent=MS.gene037383.t1 |
| chr1.3 | CDS | 77754246 | 77755172 | 77754246 | ID=cds.MS.gene037383.t1;Parent=MS.gene037383.t1 |
| chr1.3 | exon | 77753488 | 77753997 | 77753488 | ID=MS.gene037383.t1.exon2;Parent=MS.gene037383.t1 |
| chr1.3 | CDS | 77753488 | 77753997 | 77753488 | ID=cds.MS.gene037383.t1;Parent=MS.gene037383.t1 |
| Gene Sequence |
| Protein sequence |
