Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014871.t1 | XP_003603337.2 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 9.10E-197 | 696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014871.t1 | D2XNQ8 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 2.2e-199 | 696.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014871.t1 | G7JAE9 | 99.6 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 6.5e-197 | 696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014871.t1 | MTR_3g106480 | 99.582 | 478 | 2 | 0 | 1 | 478 | 1 | 478 | 0.0 | 970 |
| MS.gene014871.t1 | MTR_3g106485 | 94.142 | 478 | 24 | 2 | 1 | 478 | 1 | 474 | 0.0 | 887 |
| MS.gene014871.t1 | MTR_3g106420 | 91.841 | 478 | 39 | 0 | 1 | 478 | 3 | 480 | 0.0 | 877 |
| MS.gene014871.t1 | MTR_1g073400 | 90.795 | 478 | 40 | 1 | 1 | 478 | 1 | 474 | 0.0 | 847 |
| MS.gene014871.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 1 | 478 | 1 | 473 | 0.0 | 844 |
| MS.gene014871.t1 | MTR_1g083190 | 89.749 | 478 | 41 | 1 | 1 | 478 | 3 | 472 | 0.0 | 842 |
| MS.gene014871.t1 | MTR_3g106430 | 92.034 | 477 | 34 | 2 | 1 | 477 | 1 | 473 | 0.0 | 840 |
| MS.gene014871.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 1 | 478 | 1 | 449 | 0.0 | 837 |
| MS.gene014871.t1 | MTR_3g106470 | 80.922 | 477 | 35 | 2 | 1 | 477 | 32 | 452 | 0.0 | 737 |
| MS.gene014871.t1 | MTR_8g063830 | 80.215 | 465 | 51 | 5 | 1 | 464 | 1 | 425 | 0.0 | 668 |
| MS.gene014871.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 8.63e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014871.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 1 | 473 | 1 | 461 | 0.0 | 725 |
| MS.gene014871.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 715 |
| MS.gene014871.t1 | AT5G64870 | 71.398 | 472 | 124 | 1 | 2 | 473 | 3 | 463 | 0.0 | 660 |
Find 121 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.052081 | 3.3:-87406214 | MS.gene014871:CDS |
| AATTGAACCAATTCGGATTA+TGG | 0.158331 | 3.3:-87406278 | MS.gene014871:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.3:-87404584 | MS.gene014871:CDS |
| CTGCTAAAGCCGTGGCTCTA+AGG | 0.254538 | 3.3:-87405885 | MS.gene014871:CDS |
| CATGAATATTTCTCATATTT+GGG | 0.273088 | 3.3:-87406213 | MS.gene014871:CDS |
| GGCTGGAGAAGGTGAGAAAC+AGG | 0.294061 | 3.3:-87406037 | MS.gene014871:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.3:-87406138 | MS.gene014871:CDS |
| TCTAGGTACAAGAGGCTAAC+TGG | 0.321242 | 3.3:-87404911 | MS.gene014871:intron |
| ACTAATGGTGGTGATAATAA+TGG | 0.334485 | 3.3:-87404561 | MS.gene014871:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.339850 | 3.3:+87406413 | None:intergenic |
| CAACTTGAATTGAACCAATT+CGG | 0.339963 | 3.3:-87406285 | MS.gene014871:CDS |
| CATGTTGCCTCCGGCTTGGA+TGG | 0.343865 | 3.3:-87404445 | MS.gene014871:CDS |
| CAATGCCAATGTTAAGCAAT+TGG | 0.346020 | 3.3:-87406250 | MS.gene014871:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.3:-87404657 | MS.gene014871:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.3:-87406125 | MS.gene014871:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.360315 | 3.3:+87406443 | None:intergenic |
| TCAGAATACCTTGTGATAAC+TGG | 0.379855 | 3.3:-87406663 | MS.gene014871:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.3:+87404579 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.3:-87404576 | MS.gene014871:CDS |
| AAGCTTTACATCGTCAATTC+CGG | 0.391365 | 3.3:+87406638 | None:intergenic |
| TGTAAATCCATAATCCGAAT+TGG | 0.394399 | 3.3:+87406271 | None:intergenic |
| CTCCCTGCCGTCTTCACAAT+AGG | 0.407375 | 3.3:-87406504 | MS.gene014871:CDS |
| AAATTAGTTTGGCATATTTG+AGG | 0.439485 | 3.3:+87406454 | None:intergenic |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.3:-87406408 | MS.gene014871:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.3:-87404859 | MS.gene014871:CDS |
| CTAATGGTGGTGATAATAAT+GGG | 0.463009 | 3.3:-87404560 | MS.gene014871:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.3:-87406124 | MS.gene014871:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.3:-87404538 | MS.gene014871:CDS |
| AAACCAATATCAACATGTAC+CGG | 0.488341 | 3.3:-87406698 | None:intergenic |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.3:+87404602 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.3:-87404468 | MS.gene014871:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.493478 | 3.3:-87406355 | MS.gene014871:CDS |
| TGCTAAAGCCGTGGCTCTAA+GGG | 0.495165 | 3.3:-87405884 | MS.gene014871:CDS |
| GGAACAACTACACAGCTGTA+AGG | 0.502820 | 3.3:-87404677 | MS.gene014871:CDS |
| CTAGGTACAAGAGGCTAACT+GGG | 0.505098 | 3.3:-87404910 | MS.gene014871:intron |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.3:-87406176 | MS.gene014871:CDS |
| GGACCTATTGTGAAGACGGC+AGG | 0.507327 | 3.3:+87406501 | None:intergenic |
| ATGTTGCCTCCGGCTTGGAT+GGG | 0.512421 | 3.3:-87404444 | MS.gene014871:CDS |
| TTGGACAATGGCGGCTCAAG+TGG | 0.512749 | 3.3:-87405920 | MS.gene014871:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.3:-87406054 | MS.gene014871:CDS |
| CAGGCATGTTGCCTCCGGCT+TGG | 0.517134 | 3.3:-87404449 | MS.gene014871:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.3:+87404460 | None:intergenic |
| AGCTTTAAGCTTCTCAGTAG+TGG | 0.525292 | 3.3:+87405819 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.3:-87406237 | MS.gene014871:CDS |
| GGCTCAAGTGGCTGAGCTTG+AGG | 0.528141 | 3.3:-87405908 | MS.gene014871:CDS |
| GCAAACAGGCATGTTGCCTC+CGG | 0.529165 | 3.3:-87404454 | MS.gene014871:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.3:-87404573 | MS.gene014871:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.3:-87404537 | MS.gene014871:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.3:+87404521 | None:intergenic |
| ATCCACCAATTGCTTAACAT+TGG | 0.540817 | 3.3:+87406245 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.541119 | 3.3:-87404699 | MS.gene014871:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.542934 | 3.3:-87406580 | MS.gene014871:CDS |
| ATTCAACACTAGCTTTGCTA+AGG | 0.544556 | 3.3:+87405791 | None:intergenic |
| TGAGAGGTCGAAGACGGTGC+AGG | 0.545239 | 3.3:+87406584 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.3:-87404744 | MS.gene014871:CDS |
| ACTTCGAAGGTGTAATTCAC+CGG | 0.552954 | 3.3:+87406561 | None:intergenic |
| AAGACGGTGCAGGATTGACC+CGG | 0.554154 | 3.3:+87406594 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 3.3:-87405974 | MS.gene014871:CDS |
| GAAGAAAGCTGCTTGGACAA+TGG | 0.561707 | 3.3:-87405932 | MS.gene014871:CDS |
| AGCTTTCTTCTTAGCCAACT+CGG | 0.562096 | 3.3:+87405945 | None:intergenic |
| TAGTGTTGAATATGACACTA+AGG | 0.562966 | 3.3:-87405779 | MS.gene014871:intron |
| TAAAGCTTGAAAAGAAAGCA+TGG | 0.566286 | 3.3:-87406623 | MS.gene014871:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.3:+87406513 | None:intergenic |
| TGGCTAAGAAGAAAGCTGCT+TGG | 0.570632 | 3.3:-87405939 | MS.gene014871:CDS |
| GGCTGAGGCTAATTCCGAGT+TGG | 0.571047 | 3.3:-87405959 | MS.gene014871:CDS |
| GGTAAAGATCCCATCCAAGC+CGG | 0.577737 | 3.3:+87404435 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87404519 | MS.gene014871:CDS |
| TACCTTGTGATAACTGGCGC+CGG | 0.580254 | 3.3:-87406657 | MS.gene014871:CDS |
| TGCCAATGTTAAGCAATTGG+TGG | 0.581862 | 3.3:-87406247 | MS.gene014871:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.3:-87404732 | MS.gene014871:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.3:-87406059 | MS.gene014871:CDS |
| CTGGATGCTCTAGGTACAAG+AGG | 0.587653 | 3.3:-87404919 | MS.gene014871:intron |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.3:-87405980 | MS.gene014871:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.590772 | 3.3:+87405876 | None:intergenic |
| AGGTGTAATTCACCGGTGAG+AGG | 0.592989 | 3.3:+87406568 | None:intergenic |
| GAACAACTACACAGCTGTAA+GGG | 0.593770 | 3.3:-87404676 | MS.gene014871:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.596495 | 3.3:+87406548 | None:intergenic |
| CCTCGTTGCTTCAATGACAA+TGG | 0.596534 | 3.3:-87406361 | MS.gene014871:CDS |
| TTAGTTTGGCATATTTGAGG+AGG | 0.598221 | 3.3:+87406457 | None:intergenic |
| ACGAGGACCTATTGTGAAGA+CGG | 0.598551 | 3.3:+87406497 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.3:-87404743 | MS.gene014871:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.3:-87404853 | MS.gene014871:CDS |
| GCGATGCAGAGGGCTGGAGA+AGG | 0.602267 | 3.3:-87406048 | MS.gene014871:CDS |
| GACCTATTGTGAAGACGGCA+GGG | 0.603396 | 3.3:+87406502 | None:intergenic |
| TAATGGTGGTGATAATAATG+GGG | 0.604276 | 3.3:-87404559 | MS.gene014871:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.606472 | 3.3:+87406430 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 3.3:-87406396 | MS.gene014871:CDS |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 3.3:-87405855 | MS.gene014871:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.3:-87405868 | MS.gene014871:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.3:-87406147 | MS.gene014871:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.3:+87406431 | None:intergenic |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.3:-87406196 | MS.gene014871:CDS |
| TTGTTTGCGAGCATAAAATG+TGG | 0.626952 | 3.3:+87404803 | None:intergenic |
| AATGGTGGTGATAATAATGG+GGG | 0.628201 | 3.3:-87404558 | MS.gene014871:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 3.3:+87406578 | None:intergenic |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.3:-87406120 | MS.gene014871:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.3:+87406514 | None:intergenic |
| GCTTGAGGCTGCTAAAGCCG+TGG | 0.632981 | 3.3:-87405893 | MS.gene014871:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.3:-87406058 | MS.gene014871:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 3.3:+87406219 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.3:-87406175 | MS.gene014871:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87404619 | MS.gene014871:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.3:-87405863 | MS.gene014871:CDS |
| AACCAATATCAACATGTACC+GGG | 0.649459 | 3.3:-87406697 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.3:-87406076 | MS.gene014871:CDS |
| TTCCGGCGCCAGTTATCACA+AGG | 0.656470 | 3.3:+87406655 | None:intergenic |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 3.3:+87404480 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.3:-87404654 | MS.gene014871:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 3.3:+87404477 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.3:-87404616 | MS.gene014871:CDS |
| AGACGGTGCAGGATTGACCC+GGG | 0.662490 | 3.3:+87406595 | None:intergenic |
| GTACACTTCTCAATGCACTT+GGG | 0.664100 | 3.3:-87404698 | MS.gene014871:CDS |
| GAAAGCTGCTTGGACAATGG+CGG | 0.679670 | 3.3:-87405929 | MS.gene014871:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.680440 | 3.3:+87406429 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.3:-87404609 | MS.gene014871:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.3:-87406166 | MS.gene014871:CDS |
| GCTGGAGAAGGTGAGAAACA+GGG | 0.684270 | 3.3:-87406036 | MS.gene014871:CDS |
| AAAGATCCCATCCAAGCCGG+AGG | 0.687910 | 3.3:+87404438 | None:intergenic |
| AGAAACAGGGAATTAAAGTG+AGG | 0.688934 | 3.3:-87406023 | MS.gene014871:CDS |
| CTTTCGTAATCGTCAACACG+AGG | 0.692794 | 3.3:+87406480 | None:intergenic |
| CCATTGTCATTGAAGCAACG+AGG | 0.710320 | 3.3:+87406361 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATAAAATTAAATCATT+CGG | - | chr3.3:87405841-87405860 | MS.gene014871:CDS | 10.0% |
| !!! | ATTAAAAATCTTCTTTTTTT+TGG | + | chr3.3:87406136-87406155 | None:intergenic | 10.0% |
| !!! | TATGTTTTACTTTTAATCAA+CGG | + | chr3.3:87406068-87406087 | None:intergenic | 15.0% |
| !! | AAAAGTAAAACATAACAAGT+AGG | - | chr3.3:87406074-87406093 | MS.gene014871:CDS | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | - | chr3.3:87406217-87406236 | MS.gene014871:CDS | 20.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | chr3.3:87404890-87404909 | MS.gene014871:CDS | 20.0% |
| !! | CCACAATATAGTTTAATAAA+AGG | + | chr3.3:87405660-87405679 | None:intergenic | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | chr3.3:87404889-87404908 | MS.gene014871:CDS | 20.0% |
| !! | TTAAATTCATACATATACCT+AGG | + | chr3.3:87405521-87405540 | None:intergenic | 20.0% |
| !!! | AAAAATCTTCTTTTTTTTGG+TGG | + | chr3.3:87406133-87406152 | None:intergenic | 20.0% |
| !!! | CCTTTTATTAAACTATATTG+TGG | - | chr3.3:87405657-87405676 | MS.gene014871:intron | 20.0% |
| ! | AAGAAAAAGATTGAAGAATG+TGG | - | chr3.3:87406001-87406020 | MS.gene014871:CDS | 25.0% |
| ! | AAGAAGAAGTTAAATTTGCA+AGG | + | chr3.3:87405355-87405374 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.3:87406527-87406546 | MS.gene014871:CDS | 25.0% |
| ! | ACACAAATAATAGCAAGAAA+AGG | + | chr3.3:87405931-87405950 | None:intergenic | 25.0% |
| ! | ATATTGAAACCAATCACAAA+GGG | + | chr3.3:87405556-87405575 | None:intergenic | 25.0% |
| ! | ATGATATATGTTCATTTGCA+AGG | + | chr3.3:87405804-87405823 | None:intergenic | 25.0% |
| ! | GTATATTAACTATGGATTTG+CGG | + | chr3.3:87405782-87405801 | None:intergenic | 25.0% |
| ! | TATATTGAAACCAATCACAA+AGG | + | chr3.3:87405557-87405576 | None:intergenic | 25.0% |
| ! | TTAACAAAAATTGACAAGGT+TGG | + | chr3.3:87406038-87406057 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.3:87406527-87406546 | None:intergenic | 25.0% |
| ! | TTTGCAAGGTATATTAACTA+TGG | + | chr3.3:87405790-87405809 | None:intergenic | 25.0% |
| !! | AAATTAGTTTGGCATATTTG+AGG | + | chr3.3:87404652-87404671 | None:intergenic | 25.0% |
| !! | TAATGTTTAATCTGTCGATT+GGG | + | chr3.3:87405727-87405746 | None:intergenic | 25.0% |
| !!! | AATGTTTACTTTTTAAGTGC+TGG | - | chr3.3:87406153-87406172 | MS.gene014871:CDS | 25.0% |
| !!! | TCACTGTAATTACAGTTTTT+TGG | - | chr3.3:87405435-87405454 | MS.gene014871:intron | 25.0% |
| AAAGGATCATGATTTAGACT+TGG | + | chr3.3:87405913-87405932 | None:intergenic | 30.0% | |
| AAGTAGCAAAATGCTAATTG+AGG | - | chr3.3:87405756-87405775 | MS.gene014871:intron | 30.0% | |
| AATTGAACCAATTCGGATTA+TGG | - | chr3.3:87404825-87404844 | MS.gene014871:CDS | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.3:87406530-87406549 | MS.gene014871:CDS | 30.0% | |
| CAACTTGAATTGAACCAATT+CGG | - | chr3.3:87404818-87404837 | MS.gene014871:CDS | 30.0% | |
| CCTGTTAACAAAAATTGACA+AGG | + | chr3.3:87406042-87406061 | None:intergenic | 30.0% | |
| GTAATGTTTAATCTGTCGAT+TGG | + | chr3.3:87405728-87405747 | None:intergenic | 30.0% | |
| GTTATACGCAAAGAAAAAAG+AGG | - | chr3.3:87406337-87406356 | MS.gene014871:CDS | 30.0% | |
| TAAAGCTTGAAAAGAAAGCA+TGG | - | chr3.3:87404480-87404499 | MS.gene014871:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr3.3:87404887-87404906 | None:intergenic | 30.0% | |
| TATTGAAACCAATCACAAAG+GGG | + | chr3.3:87405555-87405574 | None:intergenic | 30.0% | |
| TATTTACGAAGATCATAGGA+CGG | - | chr3.3:87405603-87405622 | MS.gene014871:intron | 30.0% | |
| TGCATATTTACGAAGATCAT+AGG | - | chr3.3:87405599-87405618 | MS.gene014871:intron | 30.0% | |
| TGTAAATCCATAATCCGAAT+TGG | + | chr3.3:87404835-87404854 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.3:87406519-87406538 | MS.gene014871:CDS | 30.0% | |
| ! | AACTTTAAGTTTAAGCTCCT+AGG | - | chr3.3:87405501-87405520 | MS.gene014871:intron | 30.0% |
| ! | AATGTTTAATCTGTCGATTG+GGG | + | chr3.3:87405726-87405745 | None:intergenic | 30.0% |
| ! | ACTAATGGTGGTGATAATAA+TGG | - | chr3.3:87406542-87406561 | MS.gene014871:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.3:87406446-87406465 | MS.gene014871:CDS | 30.0% |
| ! | CCTTGTCAATTTTTGTTAAC+AGG | - | chr3.3:87406039-87406058 | MS.gene014871:CDS | 30.0% |
| ! | CTAATGGTGGTGATAATAAT+GGG | - | chr3.3:87406543-87406562 | MS.gene014871:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.3:87406449-87406468 | MS.gene014871:CDS | 30.0% |
| ! | TAATGGTGGTGATAATAATG+GGG | - | chr3.3:87406544-87406563 | MS.gene014871:CDS | 30.0% |
| ! | TAGTGTTGAATATGACACTA+AGG | - | chr3.3:87405324-87405343 | MS.gene014871:intron | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr3.3:87405114-87405133 | MS.gene014871:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | - | chr3.3:87404979-87404998 | MS.gene014871:intron | 30.0% |
| !!! | AATCTTCTTTTTTTTGGTGG+TGG | + | chr3.3:87406130-87406149 | None:intergenic | 30.0% |
| AACGAGTTCATTAACGTGAT+TGG | + | chr3.3:87404693-87404712 | None:intergenic | 35.0% | |
| AAGCTTTACATCGTCAATTC+CGG | + | chr3.3:87404468-87404487 | None:intergenic | 35.0% | |
| ACTATATTGTGGTTGCAGAT+AGG | - | chr3.3:87405668-87405687 | MS.gene014871:intron | 35.0% | |
| AGAAACAGGGAATTAAAGTG+AGG | - | chr3.3:87405080-87405099 | MS.gene014871:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.3:87406244-87406263 | MS.gene014871:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | chr3.3:87404663-87404682 | None:intergenic | 35.0% | |
| ATCCACCAATTGCTTAACAT+TGG | + | chr3.3:87404861-87404880 | None:intergenic | 35.0% | |
| ATTGAAACCAATCACAAAGG+GGG | + | chr3.3:87405554-87405573 | None:intergenic | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | chr3.3:87404675-87404694 | None:intergenic | 35.0% | |
| ATTTACGAAGATCATAGGAC+GGG | - | chr3.3:87405604-87405623 | MS.gene014871:intron | 35.0% | |
| CAATGCCAATGTTAAGCAAT+TGG | - | chr3.3:87404853-87404872 | MS.gene014871:CDS | 35.0% | |
| GACGGGAGTTAAAAATTCAA+TGG | - | chr3.3:87405621-87405640 | MS.gene014871:intron | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | chr3.3:87404676-87404695 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.3:87404965-87404984 | MS.gene014871:intron | 35.0% | |
| TCAGAATACCTTGTGATAAC+TGG | - | chr3.3:87404440-87404459 | MS.gene014871:CDS | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | chr3.3:87404677-87404696 | None:intergenic | 35.0% | |
| TTGTTTGCGAGCATAAAATG+TGG | + | chr3.3:87406303-87406322 | None:intergenic | 35.0% | |
| ! | AATAATGGGGGAATAACTGA+AGG | - | chr3.3:87406557-87406576 | MS.gene014871:CDS | 35.0% |
| ! | AATGGTGGTGATAATAATGG+GGG | - | chr3.3:87406545-87406564 | MS.gene014871:CDS | 35.0% |
| ! | ATGTTTAATCTGTCGATTGG+GGG | + | chr3.3:87405725-87405744 | None:intergenic | 35.0% |
| ! | TATTTTACCCCCTTTGTGAT+TGG | - | chr3.3:87405544-87405563 | MS.gene014871:intron | 35.0% |
| ! | TTAGTTTGGCATATTTGAGG+AGG | + | chr3.3:87404649-87404668 | None:intergenic | 35.0% |
| !! | AAAGAAAGCATGGATTTTCC+CGG | - | chr3.3:87404490-87404509 | MS.gene014871:CDS | 35.0% |
| !! | ATTCAACACTAGCTTTGCTA+AGG | + | chr3.3:87405315-87405334 | None:intergenic | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.3:87404978-87404997 | MS.gene014871:intron | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | - | chr3.3:87406165-87406184 | MS.gene014871:CDS | 35.0% |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.3:87406585-87406604 | None:intergenic | 40.0% | |
| AGCTTTCTTCTTAGCCAACT+CGG | + | chr3.3:87405161-87405180 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.3:87406404-87406423 | MS.gene014871:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87406584-87406603 | MS.gene014871:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.3:87406345-87406364 | MS.gene014871:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr3.3:87404695-87404714 | MS.gene014871:CDS | 40.0% | |
| CTTCGTAAATATGCAGTGCA+CGG | + | chr3.3:87405594-87405613 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.3:87405027-87405046 | MS.gene014871:intron | 40.0% | |
| GAACAACTACACAGCTGTAA+GGG | - | chr3.3:87406427-87406446 | MS.gene014871:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87406484-87406503 | MS.gene014871:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.3:87406344-87406363 | MS.gene014871:CDS | 40.0% | |
| GTACACTTCTCAATGCACTT+GGG | - | chr3.3:87406405-87406424 | MS.gene014871:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTCT+AGG | - | chr3.3:87406175-87406194 | MS.gene014871:CDS | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | + | chr3.3:87406629-87406648 | None:intergenic | 40.0% | |
| TGCCAATGTTAAGCAATTGG+TGG | - | chr3.3:87404856-87404875 | MS.gene014871:CDS | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | chr3.3:87404748-87404767 | MS.gene014871:CDS | 40.0% | |
| TGTTGAGTTAGCAAGTGCTA+TGG | - | chr3.3:87405966-87405985 | MS.gene014871:CDS | 40.0% | |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | chr3.3:87404758-87404777 | MS.gene014871:CDS | 40.0% |
| ! | ACTTCGAAGGTGTAATTCAC+CGG | + | chr3.3:87404545-87404564 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | + | chr3.3:87404427-87404446 | None:intergenic | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+GGG | - | chr3.3:87404491-87404510 | MS.gene014871:CDS | 40.0% |
| !! | AGCTTTAAGCTTCTCAGTAG+TGG | + | chr3.3:87405287-87405306 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | - | chr3.3:87404983-87405002 | MS.gene014871:intron | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr3.3:87406635-87406654 | MS.gene014871:CDS | 45.0% | |
| ACGAGGACCTATTGTGAAGA+CGG | + | chr3.3:87404609-87404628 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr3.3:87404558-87404577 | None:intergenic | 45.0% | |
| CCATTGTCATTGAAGCAACG+AGG | + | chr3.3:87404745-87404764 | None:intergenic | 45.0% | |
| CCTCGTTGCTTCAATGACAA+TGG | - | chr3.3:87404742-87404761 | MS.gene014871:CDS | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.3:87406343-87406362 | MS.gene014871:CDS | 45.0% | |
| CTAGGTACAAGAGGCTAACT+GGG | - | chr3.3:87406193-87406212 | MS.gene014871:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr3.3:87404707-87404726 | MS.gene014871:CDS | 45.0% | |
| CTTTCGTAATCGTCAACACG+AGG | + | chr3.3:87404626-87404645 | None:intergenic | 45.0% | |
| GAAGAAAGCTGCTTGGACAA+TGG | - | chr3.3:87405171-87405190 | MS.gene014871:intron | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr3.3:87405045-87405064 | MS.gene014871:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr3.3:87405123-87405142 | MS.gene014871:intron | 45.0% | |
| GGAACAACTACACAGCTGTA+AGG | - | chr3.3:87406426-87406445 | MS.gene014871:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3.3:87404956-87404975 | MS.gene014871:intron | 45.0% | |
| TCTAGGTACAAGAGGCTAAC+TGG | - | chr3.3:87406192-87406211 | MS.gene014871:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87406250-87406269 | MS.gene014871:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.3:87406487-87406506 | MS.gene014871:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | + | chr3.3:87406626-87406645 | None:intergenic | 45.0% | |
| TGGCTAAGAAGAAAGCTGCT+TGG | - | chr3.3:87405164-87405183 | MS.gene014871:intron | 45.0% | |
| ! | AGGGAGTTTTTCTGCACTCA+TGG | + | chr3.3:87404573-87404592 | None:intergenic | 45.0% |
| ! | CATCAATTTTCGCTGCGTTC+TGG | + | chr3.3:87405018-87405037 | None:intergenic | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3.3:87404907-87404926 | MS.gene014871:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.3:87406566-87406585 | MS.gene014871:CDS | 45.0% |
| AATATGCAGTGCACGGACGT+AGG | + | chr3.3:87405587-87405606 | None:intergenic | 50.0% | |
| AGGTGTAATTCACCGGTGAG+AGG | + | chr3.3:87404538-87404557 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr3.3:87405248-87405267 | MS.gene014871:intron | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.3:87406360-87406379 | MS.gene014871:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr3.3:87405044-87405063 | MS.gene014871:intron | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.3:87405235-87405254 | MS.gene014871:intron | 50.0% | |
| GAAAGCTGCTTGGACAATGG+CGG | - | chr3.3:87405174-87405193 | MS.gene014871:intron | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3.3:87404937-87404956 | MS.gene014871:intron | 50.0% | |
| GACCTATTGTGAAGACGGCA+GGG | + | chr3.3:87404604-87404623 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr3.3:87406646-87406665 | None:intergenic | 50.0% | |
| GCTGGAGAAGGTGAGAAACA+GGG | - | chr3.3:87405067-87405086 | MS.gene014871:intron | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3.3:87404928-87404947 | MS.gene014871:intron | 50.0% | |
| GGTAAAGATCCCATCCAAGC+CGG | + | chr3.3:87406671-87406690 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.3:87406371-87406390 | MS.gene014871:CDS | 50.0% | |
| TACCTTGTGATAACTGGCGC+CGG | - | chr3.3:87404446-87404465 | MS.gene014871:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3.3:87404927-87404946 | MS.gene014871:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr3.3:87404866-87404885 | MS.gene014871:CDS | 50.0% |
| ! | CTGGATGCTCTAGGTACAAG+AGG | - | chr3.3:87406184-87406203 | MS.gene014871:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCTT+TGG | - | chr3.3:87406271-87406290 | MS.gene014871:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.3:87406565-87406584 | MS.gene014871:CDS | 50.0% |
| !! | TGCTAAAGCCGTGGCTCTAA+GGG | - | chr3.3:87405219-87405238 | MS.gene014871:intron | 50.0% |
| AAAGATCCCATCCAAGCCGG+AGG | + | chr3.3:87406668-87406687 | None:intergenic | 55.0% | |
| AAGACGGCAGGGAGAACGAA+AGG | + | chr3.3:87404593-87404612 | None:intergenic | 55.0% | |
| AAGACGGTGCAGGATTGACC+CGG | + | chr3.3:87404512-87404531 | None:intergenic | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr3.3:87405129-87405148 | MS.gene014871:intron | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | + | chr3.3:87404592-87404611 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.3:87406494-87406513 | MS.gene014871:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.3:87405230-87405249 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+AGG | - | chr3.3:87404599-87404618 | MS.gene014871:CDS | 55.0% | |
| GCAAACAGGCATGTTGCCTC+CGG | - | chr3.3:87406649-87406668 | MS.gene014871:CDS | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.3:87406359-87406378 | MS.gene014871:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr3.3:87405240-87405259 | MS.gene014871:intron | 55.0% | |
| GGACCTATTGTGAAGACGGC+AGG | + | chr3.3:87404605-87404624 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATTCCGAGT+TGG | - | chr3.3:87405144-87405163 | MS.gene014871:intron | 55.0% | |
| GGCTGGAGAAGGTGAGAAAC+AGG | - | chr3.3:87405066-87405085 | MS.gene014871:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.3:87405049-87405068 | MS.gene014871:intron | 55.0% | |
| TTCCGGCGCCAGTTATCACA+AGG | + | chr3.3:87404451-87404470 | None:intergenic | 55.0% | |
| TTGGACAATGGCGGCTCAAG+TGG | - | chr3.3:87405183-87405202 | MS.gene014871:intron | 55.0% | |
| ! | CTGCTAAAGCCGTGGCTCTA+AGG | - | chr3.3:87405218-87405237 | MS.gene014871:intron | 55.0% |
| !! | ATGTTGCCTCCGGCTTGGAT+GGG | - | chr3.3:87406659-87406678 | MS.gene014871:CDS | 55.0% |
| AGACGGTGCAGGATTGACCC+GGG | + | chr3.3:87404511-87404530 | None:intergenic | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr3.3:87404528-87404547 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr3.3:87404523-87404542 | MS.gene014871:CDS | 60.0% | |
| GCTTGAGGCTGCTAAAGCCG+TGG | - | chr3.3:87405210-87405229 | MS.gene014871:intron | 60.0% | |
| GGCTCAAGTGGCTGAGCTTG+AGG | - | chr3.3:87405195-87405214 | MS.gene014871:intron | 60.0% | |
| TGAGAGGTCGAAGACGGTGC+AGG | + | chr3.3:87404522-87404541 | None:intergenic | 60.0% | |
| !! | CATGTTGCCTCCGGCTTGGA+TGG | - | chr3.3:87406658-87406677 | MS.gene014871:CDS | 60.0% |
| CAGGCATGTTGCCTCCGGCT+TGG | - | chr3.3:87406654-87406673 | MS.gene014871:CDS | 65.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.3:87406504-87406523 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+AGG | - | chr3.3:87405055-87405074 | MS.gene014871:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87404419 | 87406706 | 87404419 | ID=MS.gene014871 |
| chr3.3 | mRNA | 87404419 | 87406706 | 87404419 | ID=MS.gene014871.t1;Parent=MS.gene014871 |
| chr3.3 | exon | 87405780 | 87406706 | 87405780 | ID=MS.gene014871.t1.exon1;Parent=MS.gene014871.t1 |
| chr3.3 | CDS | 87405780 | 87406706 | 87405780 | ID=cds.MS.gene014871.t1;Parent=MS.gene014871.t1 |
| chr3.3 | exon | 87404419 | 87404928 | 87404419 | ID=MS.gene014871.t1.exon2;Parent=MS.gene014871.t1 |
| chr3.3 | CDS | 87404419 | 87404928 | 87404419 | ID=cds.MS.gene014871.t1;Parent=MS.gene014871.t1 |
| Gene Sequence |
| Protein sequence |
