Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052312.t1 | XP_003603332.1 | 95.6 | 480 | 17 | 1 | 1 | 476 | 1 | 480 | 5.50E-186 | 660.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052312.t1 | D2XNQ9 | 95.6 | 480 | 17 | 1 | 1 | 476 | 1 | 480 | 1.3e-188 | 660.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052312.t1 | G7JAE4 | 95.6 | 480 | 17 | 1 | 1 | 476 | 1 | 480 | 4.0e-186 | 660.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052312.t1 | MTR_3g106420 | 95.625 | 480 | 17 | 1 | 1 | 476 | 1 | 480 | 0.0 | 931 |
| MS.gene052312.t1 | MTR_3g106480 | 91.423 | 478 | 37 | 1 | 3 | 476 | 1 | 478 | 0.0 | 890 |
| MS.gene052312.t1 | MTR_3g106485 | 93.671 | 474 | 30 | 0 | 3 | 476 | 1 | 474 | 0.0 | 883 |
| MS.gene052312.t1 | MTR_1g083190 | 94.328 | 476 | 23 | 1 | 1 | 476 | 1 | 472 | 0.0 | 880 |
| MS.gene052312.t1 | MTR_1g073400 | 91.139 | 474 | 42 | 0 | 3 | 476 | 1 | 474 | 0.0 | 843 |
| MS.gene052312.t1 | MTR_3g106430 | 92.178 | 473 | 37 | 0 | 3 | 475 | 1 | 473 | 0.0 | 838 |
| MS.gene052312.t1 | MTR_1g071130 | 85.474 | 475 | 42 | 2 | 3 | 476 | 1 | 449 | 0.0 | 826 |
| MS.gene052312.t1 | MTR_1g115145 | 87.056 | 479 | 51 | 4 | 3 | 476 | 1 | 473 | 0.0 | 820 |
| MS.gene052312.t1 | MTR_3g106470 | 83.229 | 477 | 20 | 3 | 3 | 475 | 32 | 452 | 0.0 | 756 |
| MS.gene052312.t1 | MTR_8g063830 | 80.388 | 464 | 48 | 5 | 3 | 462 | 1 | 425 | 0.0 | 670 |
| MS.gene052312.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 4.67e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052312.t1 | AT5G25260 | 73.150 | 473 | 113 | 2 | 3 | 472 | 1 | 462 | 0.0 | 720 |
| MS.gene052312.t1 | AT5G25250 | 74.043 | 470 | 110 | 2 | 3 | 471 | 1 | 459 | 0.0 | 719 |
| MS.gene052312.t1 | AT5G64870 | 70.551 | 472 | 124 | 2 | 4 | 471 | 3 | 463 | 0.0 | 652 |
Find 111 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.101480 | 4.4:-34057662 | MS.gene052312:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 4.4:-34056219 | MS.gene052312:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.284347 | 4.4:-34057661 | MS.gene052312:CDS |
| GCGGAAGGAATTGTGACATT+TGG | 0.315650 | 4.4:-34056379 | MS.gene052312:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.318930 | 4.4:+34057618 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 4.4:-34057586 | MS.gene052312:CDS |
| CAATGCAAATGTTAAGCAAT+TGG | 0.339200 | 4.4:-34057698 | MS.gene052312:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 4.4:-34056292 | MS.gene052312:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 4.4:-34058146 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 4.4:-34057952 | MS.gene052312:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 4.4:-34056092 | MS.gene052312:CDS |
| ACTTCGAATGTGTAGTTTAC+CGG | 0.360846 | 4.4:+34058009 | None:intergenic |
| CGGAAGGAATTGTGACATTT+GGG | 0.363359 | 4.4:-34056378 | MS.gene052312:CDS |
| CAGCTTGAGTTGAATCAATT+CGG | 0.364537 | 4.4:-34057733 | MS.gene052312:CDS |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 4.4:-34057573 | MS.gene052312:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 4.4:+34056214 | None:intergenic |
| AGAGCTATACGCAAAGAAAA+AGG | 0.384802 | 4.4:-34056404 | MS.gene052312:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 4.4:-34056211 | MS.gene052312:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 4.4:-34058111 | MS.gene052312:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 4.4:-34056546 | MS.gene052312:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 4.4:-34057932 | MS.gene052312:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 4.4:-34057371 | MS.gene052312:CDS |
| ATCATGAGGTGAAATAAGTT+TGG | 0.419407 | 4.4:+34057891 | None:intergenic |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 4.4:+34057363 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 4.4:-34057572 | MS.gene052312:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 4.4:-34058040 | MS.gene052312:CDS |
| AACGAGTTCATTAACGTGGT+TGG | 0.460140 | 4.4:+34057861 | None:intergenic |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 4.4:+34058041 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 4.4:-34057347 | MS.gene052312:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.472122 | 4.4:-34057856 | MS.gene052312:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 4.4:-34057368 | MS.gene052312:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 4.4:-34056312 | MS.gene052312:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 4.4:-34056115 | MS.gene052312:CDS |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 4.4:+34058127 | None:intergenic |
| GAGGGCAGGAGAGGGTGACA+AGG | 0.500083 | 4.4:-34057488 | MS.gene052312:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 4.4:+34057949 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 4.4:-34056096 | MS.gene052312:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 4.4:-34057803 | MS.gene052312:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 4.4:-34056494 | MS.gene052312:CDS |
| TAAGTTTGGCATATTTGAGA+AGG | 0.518370 | 4.4:+34057905 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 4.4:-34056091 | MS.gene052312:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 4.4:+34057961 | None:intergenic |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 4.4:+34056107 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 4.4:-34057685 | MS.gene052312:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 4.4:+34057972 | None:intergenic |
| GGCAGGAGAGGGTGACAAGG+AGG | 0.532326 | 4.4:-34057485 | MS.gene052312:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 4.4:-34056208 | MS.gene052312:CDS |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 4.4:+34058032 | None:intergenic |
| AGCAACTTCTTTCATAGCCA+TGG | 0.536125 | 4.4:+34056168 | None:intergenic |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 4.4:-34058028 | MS.gene052312:CDS |
| CTAAGAGAAGCTGAGTTACA+AGG | 0.541402 | 4.4:-34057316 | MS.gene052312:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 4.4:-34057407 | MS.gene052312:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 4.4:-34057356 | MS.gene052312:CDS |
| GTTCATTAACGTGGTTGGAG+TGG | 0.546435 | 4.4:+34057866 | None:intergenic |
| GTGACATTTGGGAATGCTCA+AGG | 0.546466 | 4.4:-34056367 | MS.gene052312:CDS |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 4.4:-34057624 | MS.gene052312:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.549128 | 4.4:-34057806 | MS.gene052312:CDS |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 4.4:+34056082 | None:intergenic |
| TGCGATGCAGAGGGCAGGAG+AGG | 0.552588 | 4.4:-34057497 | MS.gene052312:CDS |
| GTTATTGCGATGCAGAGGGC+AGG | 0.553673 | 4.4:-34057502 | MS.gene052312:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 4.4:-34057341 | MS.gene052312:CDS |
| GCAGGAGAGGGTGACAAGGA+GGG | 0.564117 | 4.4:-34057484 | MS.gene052312:CDS |
| TGCAAATGTTAAGCAATTGG+TGG | 0.565284 | 4.4:-34057695 | MS.gene052312:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 4.4:+34057239 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 4.4:-34057844 | MS.gene052312:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 4.4:-34056334 | MS.gene052312:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 4.4:-34057380 | MS.gene052312:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 4.4:-34056467 | MS.gene052312:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 4.4:+34057798 | None:intergenic |
| ATGGCTATGAAAGAAGTTGC+TGG | 0.575925 | 4.4:-34056166 | MS.gene052312:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 4.4:-34057568 | MS.gene052312:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 4.4:-34057387 | MS.gene052312:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 4.4:-34056311 | MS.gene052312:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 4.4:-34058145 | None:intergenic |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 4.4:-34057507 | MS.gene052312:CDS |
| GCGATGCAGAGGGCAGGAGA+GGG | 0.587192 | 4.4:-34057496 | MS.gene052312:CDS |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 4.4:+34058042 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 4.4:-34057428 | MS.gene052312:CDS |
| CCTCGCTGCTTCCATGACGA+TGG | 0.591174 | 4.4:-34057809 | MS.gene052312:CDS |
| CTTGAACGAGTTCATTAACG+TGG | 0.594211 | 4.4:+34057857 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 4.4:-34056488 | MS.gene052312:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 4.4:-34057303 | MS.gene052312:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 4.4:-34057644 | MS.gene052312:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 4.4:-34057595 | MS.gene052312:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 4.4:-34056545 | MS.gene052312:intron |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.616761 | 4.4:-34057471 | MS.gene052312:CDS |
| ATGTGTAGTTTACCGGTGAG+AGG | 0.616767 | 4.4:+34058016 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 4.4:+34056124 | None:intergenic |
| GATTGCTAAGATTAATGCTG+AGG | 0.627521 | 4.4:-34056254 | MS.gene052312:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 4.4:-34057843 | MS.gene052312:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 4.4:-34057392 | MS.gene052312:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 4.4:+34057667 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.636072 | 4.4:-34057506 | MS.gene052312:CDS |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 4.4:-34057623 | MS.gene052312:CDS |
| TGATAAAACTGAAGGTGCCA+TGG | 0.647694 | 4.4:-34056185 | MS.gene052312:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 4.4:+34056127 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 4.4:-34057227 | MS.gene052312:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 4.4:-34057524 | MS.gene052312:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 4.4:-34056289 | MS.gene052312:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 4.4:+34058026 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 4.4:+34056085 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 4.4:+34058103 | None:intergenic |
| TGGTTGGAGTGGCGATCATG+AGG | 0.675682 | 4.4:+34057877 | None:intergenic |
| AATGGTGGTGATAAAACTGA+AGG | 0.687871 | 4.4:-34056193 | MS.gene052312:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 4.4:+34057928 | None:intergenic |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 4.4:-34057842 | MS.gene052312:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 4.4:+34057950 | None:intergenic |
| ATTAATGCTGAGGCTATACG+CGG | 0.715276 | 4.4:-34056244 | MS.gene052312:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 4.4:+34057948 | None:intergenic |
| CCATCGTCATGGAAGCAGCG+AGG | 0.728643 | 4.4:+34057809 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 4.4:-34057377 | MS.gene052312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAAAATTAATCATG+TGG | - | chr4.4:34057442-34057461 | MS.gene052312:CDS | 10.0% |
| !! | AAGTTATATATATATTTGCT+TGG | + | chr4.4:34057013-34057032 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGACTAATAAA+AGG | - | chr4.4:34057139-34057158 | MS.gene052312:intron | 15.0% |
| !!! | AAATATTTACTTTTAAGTGT+TGG | - | chr4.4:34057583-34057602 | MS.gene052312:CDS | 15.0% |
| !!! | TCATTATTGATTATGTTATA+TGG | - | chr4.4:34057222-34057241 | MS.gene052312:intron | 15.0% |
| !!! | TTTTTTGGTGATTAAAATTT+TGG | - | chr4.4:34057631-34057650 | MS.gene052312:CDS | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | - | chr4.4:34057381-34057400 | MS.gene052312:CDS | 20.0% |
| !! | GTAATTTGAATTGAAGAATA+TGG | - | chr4.4:34057482-34057501 | MS.gene052312:CDS | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr4.4:34057993-34058012 | MS.gene052312:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr4.4:34056543-34056562 | MS.gene052312:CDS | 25.0% |
| ! | TCAAACTTAAAAAGAAAGCA+TGG | - | chr4.4:34056133-34056152 | MS.gene052312:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr4.4:34056542-34056561 | MS.gene052312:CDS | 25.0% |
| ! | TGTAATTAGTGTTATCATAG+AGG | + | chr4.4:34057102-34057121 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr4.4:34057993-34058012 | None:intergenic | 25.0% |
| !! | AAAAGGATAAACAACTTTTG+AGG | - | chr4.4:34057156-34057175 | MS.gene052312:intron | 25.0% |
| !! | ATTAAAATTTTGGATGGTGT+AGG | - | chr4.4:34057641-34057660 | MS.gene052312:CDS | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr4.4:34056632-34056651 | MS.gene052312:intron | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | - | chr4.4:34057616-34057635 | MS.gene052312:CDS | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | - | chr4.4:34057635-34057654 | MS.gene052312:CDS | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | + | chr4.4:34057523-34057542 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | + | chr4.4:34056316-34056335 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr4.4:34057996-34058015 | MS.gene052312:CDS | 30.0% | |
| CAATGCAAATGTTAAGCAAT+TGG | - | chr4.4:34056506-34056525 | MS.gene052312:CDS | 30.0% | |
| TAAGTTTGGCATATTTGAGA+AGG | + | chr4.4:34056302-34056321 | None:intergenic | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr4.4:34056977-34056996 | MS.gene052312:intron | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr4.4:34056104-34056123 | None:intergenic | 30.0% | |
| TGGCTGTTATATAACTATAC+TGG | - | chr4.4:34057603-34057622 | MS.gene052312:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr4.4:34057985-34058004 | MS.gene052312:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr4.4:34057912-34057931 | MS.gene052312:CDS | 30.0% |
| ! | ATCATGTGGTAATTAACTTG+TGG | - | chr4.4:34057456-34057475 | MS.gene052312:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr4.4:34057915-34057934 | MS.gene052312:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr4.4:34056631-34056650 | MS.gene052312:intron | 30.0% |
| ! | TTAAGAGCTTTTGTCAGATA+AGG | + | chr4.4:34058141-34058160 | None:intergenic | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr4.4:34056767-34056786 | MS.gene052312:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr4.4:34057893-34057912 | MS.gene052312:CDS | 35.0% | |
| AAGCTGAAAAGTGAAAAGGT+TGG | + | chr4.4:34057519-34057538 | None:intergenic | 35.0% | |
| ACTTCGAATGTGTAGTTTAC+CGG | + | chr4.4:34056198-34056217 | None:intergenic | 35.0% | |
| AGAGCTATACGCAAAGAAAA+AGG | - | chr4.4:34057800-34057819 | MS.gene052312:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr4.4:34057710-34057729 | MS.gene052312:CDS | 35.0% | |
| GAAACAGTTGTGATCTATGT+TGG | - | chr4.4:34057548-34057567 | MS.gene052312:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr4.4:34056235-34056254 | None:intergenic | 35.0% | |
| GATTGCTAAGATTAATGCTG+AGG | - | chr4.4:34057950-34057969 | MS.gene052312:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr4.4:34056618-34056637 | MS.gene052312:intron | 35.0% | |
| GCTGTACAAGAAACAAAAAG+AGG | - | chr4.4:34057683-34057702 | MS.gene052312:CDS | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr4.4:34056540-34056559 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr4.4:34056093-34056112 | MS.gene052312:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr4.4:34058083-34058102 | None:intergenic | 35.0% | |
| TGCAAATGTTAAGCAATTGG+TGG | - | chr4.4:34056509-34056528 | MS.gene052312:CDS | 35.0% | |
| ! | AATGGTGGTGATAAAACTGA+AGG | - | chr4.4:34058011-34058030 | MS.gene052312:CDS | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr4.4:34056636-34056655 | MS.gene052312:intron | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr4.4:34056144-34056163 | MS.gene052312:CDS | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | + | chr4.4:34056968-34056987 | None:intergenic | 35.0% |
| !! | CAGCTTGAGTTGAATCAATT+CGG | - | chr4.4:34056471-34056490 | MS.gene052312:CDS | 35.0% |
| AACGAGTTCATTAACGTGGT+TGG | + | chr4.4:34056346-34056365 | None:intergenic | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr4.4:34056733-34056752 | MS.gene052312:intron | 40.0% | |
| AGCAACTTCTTTCATAGCCA+TGG | + | chr4.4:34058039-34058058 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr4.4:34057870-34057889 | MS.gene052312:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr4.4:34056901-34056920 | MS.gene052312:intron | 40.0% | |
| ATACGCAAAGAAAAAGGAGG+CGG | - | chr4.4:34057806-34057825 | MS.gene052312:CDS | 40.0% | |
| ATGGCTATGAAAGAAGTTGC+TGG | - | chr4.4:34058038-34058057 | MS.gene052312:CDS | 40.0% | |
| ATTAATGCTGAGGCTATACG+CGG | - | chr4.4:34057960-34057979 | MS.gene052312:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr4.4:34056348-34056367 | MS.gene052312:CDS | 40.0% | |
| CGGAAGGAATTGTGACATTT+GGG | - | chr4.4:34057826-34057845 | MS.gene052312:CDS | 40.0% | |
| CTAAGAGAAGCTGAGTTACA+AGG | - | chr4.4:34056888-34056907 | MS.gene052312:intron | 40.0% | |
| CTTGAACGAGTTCATTAACG+TGG | + | chr4.4:34056350-34056369 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr4.4:34056680-34056699 | MS.gene052312:intron | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr4.4:34057892-34057911 | MS.gene052312:CDS | 40.0% | |
| GCTATACGCAAAGAAAAAGG+AGG | - | chr4.4:34057803-34057822 | MS.gene052312:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr4.4:34057659-34057678 | MS.gene052312:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr4.4:34056609-34056628 | MS.gene052312:intron | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | - | chr4.4:34056361-34056380 | MS.gene052312:CDS | 40.0% | |
| TGCTTGGACTAAACTAACCT+TGG | + | chr4.4:34056997-34057016 | None:intergenic | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr4.4:34058080-34058099 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr4.4:34057658-34057677 | MS.gene052312:CDS | 40.0% | |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr4.4:34056812-34056831 | MS.gene052312:intron | 40.0% |
| !! | TGATAAAACTGAAGGTGCCA+TGG | - | chr4.4:34058019-34058038 | MS.gene052312:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr4.4:34058089-34058108 | MS.gene052312:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr4.4:34056259-34056278 | None:intergenic | 45.0% | |
| ATGTGTAGTTTACCGGTGAG+AGG | + | chr4.4:34056191-34056210 | None:intergenic | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | - | chr4.4:34056362-34056381 | MS.gene052312:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr4.4:34056360-34056379 | MS.gene052312:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr4.4:34056698-34056717 | MS.gene052312:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr4.4:34056776-34056795 | MS.gene052312:intron | 45.0% | |
| GCGGAAGGAATTGTGACATT+TGG | - | chr4.4:34057825-34057844 | MS.gene052312:CDS | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | - | chr4.4:34056581-34056600 | MS.gene052312:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr4.4:34056797-34056816 | MS.gene052312:intron | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | + | chr4.4:34056589-34056608 | None:intergenic | 45.0% | |
| GTGACATTTGGGAATGCTCA+AGG | - | chr4.4:34057837-34057856 | MS.gene052312:CDS | 45.0% | |
| GTTCATTAACGTGGTTGGAG+TGG | + | chr4.4:34056341-34056360 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr4.4:34057716-34057735 | MS.gene052312:CDS | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | - | chr4.4:34056580-34056599 | MS.gene052312:intron | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr4.4:34056560-34056579 | MS.gene052312:intron | 45.0% | |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr4.4:34056246-34056265 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr4.4:34058113-34058132 | MS.gene052312:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr4.4:34056080-34056099 | None:intergenic | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr4.4:34056697-34056716 | MS.gene052312:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr4.4:34056279-34056298 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr4.4:34056409-34056428 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr4.4:34056257-34056276 | None:intergenic | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | + | chr4.4:34058125-34058144 | None:intergenic | 50.0% | |
| GCAAAGAAAAAGGAGGCGGA+AGG | - | chr4.4:34057810-34057829 | MS.gene052312:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr4.4:34058100-34058119 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr4.4:34056258-34056277 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr4.4:34056817-34056836 | MS.gene052312:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr4.4:34056519-34056538 | MS.gene052312:CDS | 50.0% |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr4.4:34056411-34056430 | MS.gene052312:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr4.4:34056165-34056184 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr4.4:34058122-34058141 | None:intergenic | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | - | chr4.4:34056863-34056882 | MS.gene052312:intron | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr4.4:34056166-34056185 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr4.4:34058112-34058131 | MS.gene052312:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr4.4:34056252-34056271 | MS.gene052312:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | - | chr4.4:34056857-34056876 | MS.gene052312:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+AGG | - | chr4.4:34056702-34056721 | MS.gene052312:intron | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr4.4:34056181-34056200 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr4.4:34056401-34056420 | MS.gene052312:CDS | 55.0% | |
| TGGTTGGAGTGGCGATCATG+AGG | + | chr4.4:34056330-34056349 | None:intergenic | 55.0% | |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr4.4:34056824-34056843 | MS.gene052312:intron | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | - | chr4.4:34057737-34057756 | MS.gene052312:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr4.4:34056272-34056291 | MS.gene052312:CDS | 55.0% |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr4.4:34056176-34056195 | MS.gene052312:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr4.4:34058108-34058127 | MS.gene052312:CDS | 60.0% | |
| CCATCGTCATGGAAGCAGCG+AGG | + | chr4.4:34056398-34056417 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACGA+TGG | - | chr4.4:34056395-34056414 | MS.gene052312:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr4.4:34056398-34056417 | MS.gene052312:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr4.4:34056164-34056183 | MS.gene052312:CDS | 60.0% | |
| GCAGGAGAGGGTGACAAGGA+GGG | - | chr4.4:34056720-34056739 | MS.gene052312:intron | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | - | chr4.4:34056848-34056867 | MS.gene052312:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr4.4:34056175-34056194 | None:intergenic | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr4.4:34056827-34056846 | MS.gene052312:intron | 60.0% |
| GAGGGCAGGAGAGGGTGACA+AGG | - | chr4.4:34056716-34056735 | MS.gene052312:intron | 65.0% | |
| GCGATGCAGAGGGCAGGAGA+GGG | - | chr4.4:34056708-34056727 | MS.gene052312:intron | 65.0% | |
| GGCAGGAGAGGGTGACAAGG+AGG | - | chr4.4:34056719-34056738 | MS.gene052312:intron | 65.0% | |
| TGCGATGCAGAGGGCAGGAG+AGG | - | chr4.4:34056707-34056726 | MS.gene052312:intron | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr4.4:34056844-34056863 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr4.4:34056836-34056855 | MS.gene052312:intron | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr4.4:34056833-34056852 | MS.gene052312:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34056066 | 34058160 | 34056066 | ID=MS.gene052312 |
| chr4.4 | mRNA | 34056066 | 34058160 | 34056066 | ID=MS.gene052312.t1;Parent=MS.gene052312 |
| chr4.4 | exon | 34057228 | 34058160 | 34057228 | ID=MS.gene052312.t1.exon1;Parent=MS.gene052312.t1 |
| chr4.4 | CDS | 34057228 | 34058160 | 34057228 | ID=cds.MS.gene052312.t1;Parent=MS.gene052312.t1 |
| chr4.4 | exon | 34056066 | 34056563 | 34056066 | ID=MS.gene052312.t1.exon2;Parent=MS.gene052312.t1 |
| chr4.4 | CDS | 34056066 | 34056563 | 34056066 | ID=cds.MS.gene052312.t1;Parent=MS.gene052312.t1 |
| Gene Sequence |
| Protein sequence |
