Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031827.t1 | XP_003603332.1 | 95.4 | 481 | 21 | 1 | 1 | 481 | 1 | 480 | 6.10E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031827.t1 | D2XNQ9 | 95.4 | 481 | 21 | 1 | 1 | 481 | 1 | 480 | 1.5e-187 | 657.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031827.t1 | G7JAE4 | 95.4 | 481 | 21 | 1 | 1 | 481 | 1 | 480 | 4.4e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031827.t1 | MTR_3g106420 | 96.258 | 481 | 17 | 1 | 1 | 481 | 1 | 480 | 0.0 | 940 |
| MS.gene031827.t1 | MTR_3g106480 | 91.858 | 479 | 38 | 1 | 3 | 481 | 1 | 478 | 0.0 | 898 |
| MS.gene031827.t1 | MTR_3g106485 | 93.528 | 479 | 26 | 2 | 3 | 481 | 1 | 474 | 0.0 | 884 |
| MS.gene031827.t1 | MTR_1g083190 | 92.931 | 481 | 25 | 1 | 1 | 481 | 1 | 472 | 0.0 | 876 |
| MS.gene031827.t1 | MTR_3g106430 | 91.841 | 478 | 34 | 2 | 3 | 480 | 1 | 473 | 0.0 | 838 |
| MS.gene031827.t1 | MTR_1g073400 | 89.770 | 479 | 44 | 1 | 3 | 481 | 1 | 474 | 0.0 | 832 |
| MS.gene031827.t1 | MTR_1g115145 | 87.500 | 480 | 52 | 4 | 3 | 481 | 1 | 473 | 0.0 | 827 |
| MS.gene031827.t1 | MTR_1g071130 | 84.760 | 479 | 43 | 2 | 3 | 481 | 1 | 449 | 0.0 | 826 |
| MS.gene031827.t1 | MTR_3g106470 | 84.310 | 478 | 18 | 3 | 3 | 480 | 32 | 452 | 0.0 | 769 |
| MS.gene031827.t1 | MTR_8g063830 | 80.258 | 466 | 50 | 5 | 3 | 467 | 1 | 425 | 0.0 | 673 |
| MS.gene031827.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.32e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031827.t1 | AT5G25260 | 72.842 | 475 | 116 | 2 | 3 | 477 | 1 | 462 | 0.0 | 719 |
| MS.gene031827.t1 | AT5G25250 | 72.574 | 474 | 115 | 2 | 3 | 476 | 1 | 459 | 0.0 | 714 |
| MS.gene031827.t1 | AT5G64870 | 70.021 | 477 | 123 | 3 | 4 | 476 | 3 | 463 | 0.0 | 650 |
Find 115 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.101480 | 4.3:-32024782 | MS.gene031827:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 4.3:-32023658 | MS.gene031827:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.284347 | 4.3:-32024781 | MS.gene031827:CDS |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 4.3:-32024453 | MS.gene031827:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.318930 | 4.3:+32024738 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 4.3:-32024706 | MS.gene031827:CDS |
| CAATGCAAATGTTAAGCAAT+TGG | 0.339200 | 4.3:-32024818 | MS.gene031827:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 4.3:-32023731 | MS.gene031827:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 4.3:-32025266 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 4.3:-32025072 | MS.gene031827:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 4.3:-32023516 | MS.gene031827:CDS |
| ACTTCGAATGTGTAGTTTAC+CGG | 0.360846 | 4.3:+32025129 | None:intergenic |
| CAGCTTGAGTTGAATCAATT+CGG | 0.364537 | 4.3:-32024853 | MS.gene031827:CDS |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 4.3:-32024693 | MS.gene031827:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 4.3:+32023653 | None:intergenic |
| AGAGCTATACGCAAAGAAAA+AGG | 0.384802 | 4.3:-32023843 | MS.gene031827:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 4.3:-32023650 | MS.gene031827:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 4.3:-32025231 | MS.gene031827:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 4.3:-32023985 | MS.gene031827:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 4.3:-32025052 | MS.gene031827:CDS |
| GGCTTGGACCAAGGCTGCTC+AGG | 0.407940 | 4.3:-32024491 | MS.gene031827:CDS |
| ATCATGAGGTGAAATAAGTT+TGG | 0.419407 | 4.3:+32025011 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 4.3:-32024692 | MS.gene031827:CDS |
| TTCAGCCACCTGAGCAGCCT+TGG | 0.442304 | 4.3:+32024483 | None:intergenic |
| AAGAAAGCATGGATTATTCC+CGG | 0.443908 | 4.3:-32025180 | MS.gene031827:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 4.3:-32025160 | MS.gene031827:CDS |
| AACGAGTTCATTAACGTGGT+TGG | 0.460140 | 4.3:+32024981 | None:intergenic |
| CACCGTCTTGGACCTTTCAC+CGG | 0.467604 | 4.3:-32025148 | MS.gene031827:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 4.3:+32025161 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 4.3:-32024467 | MS.gene031827:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.472122 | 4.3:-32024976 | MS.gene031827:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 4.3:-32023751 | MS.gene031827:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 4.3:-32023539 | MS.gene031827:CDS |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 4.3:+32025247 | None:intergenic |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 4.3:+32025069 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 4.3:-32023520 | MS.gene031827:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 4.3:-32024923 | MS.gene031827:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 4.3:-32023933 | MS.gene031827:CDS |
| TTGGACCAAGGCTGCTCAGG+TGG | 0.512554 | 4.3:-32024488 | MS.gene031827:CDS |
| TGCTCAGGTGGCTGAAGTTG+AGG | 0.517853 | 4.3:-32024476 | MS.gene031827:CDS |
| TAAGTTTGGCATATTTGAGA+AGG | 0.518370 | 4.3:+32025025 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 4.3:-32023515 | MS.gene031827:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 4.3:+32025081 | None:intergenic |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 4.3:+32023531 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 4.3:-32024805 | MS.gene031827:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 4.3:+32025092 | None:intergenic |
| GCGGAAGGAATTGTGACACT+TGG | 0.531537 | 4.3:-32023818 | MS.gene031827:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 4.3:-32023647 | MS.gene031827:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 4.3:+32023592 | None:intergenic |
| TGAAAGGTCCAAGACGGTGC+AGG | 0.535402 | 4.3:+32025152 | None:intergenic |
| GACAGGAGAGGGTGACAAGG+AGG | 0.539144 | 4.3:-32024605 | MS.gene031827:CDS |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 4.3:-32024436 | MS.gene031827:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 4.3:-32024527 | MS.gene031827:CDS |
| GTTATTGCGATGCAGAGGAC+AGG | 0.544043 | 4.3:-32024622 | MS.gene031827:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 4.3:-32024452 | MS.gene031827:CDS |
| ACTAATGGTGGTGATAATAG+TGG | 0.546356 | 4.3:-32023635 | MS.gene031827:CDS |
| GTTCATTAACGTGGTTGGAG+TGG | 0.546435 | 4.3:+32024986 | None:intergenic |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 4.3:-32024744 | MS.gene031827:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.549128 | 4.3:-32024926 | MS.gene031827:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.550695 | 4.3:-32024500 | MS.gene031827:CDS |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 4.3:+32023506 | None:intergenic |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 4.3:-32024461 | MS.gene031827:CDS |
| GAGGACAGGAGAGGGTGACA+AGG | 0.560312 | 4.3:-32024608 | MS.gene031827:CDS |
| TGCAAATGTTAAGCAATTGG+TGG | 0.565284 | 4.3:-32024815 | MS.gene031827:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 4.3:+32024359 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 4.3:-32024964 | MS.gene031827:CDS |
| ATGTGTAGTTTACCGGTGAA+AGG | 0.570075 | 4.3:+32025136 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 4.3:-32023773 | MS.gene031827:CDS |
| GCGATGCAGAGGACAGGAGA+GGG | 0.571152 | 4.3:-32024616 | MS.gene031827:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 4.3:-32023906 | MS.gene031827:CDS |
| ACAGGAGAGGGTGACAAGGA+GGG | 0.572927 | 4.3:-32024604 | MS.gene031827:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 4.3:+32024918 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 4.3:-32023590 | MS.gene031827:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 4.3:-32024688 | MS.gene031827:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 4.3:-32023806 | MS.gene031827:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 4.3:-32024507 | MS.gene031827:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 4.3:-32023750 | MS.gene031827:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 4.3:-32025265 | None:intergenic |
| TGATAAAACTGAAGGTGCCA+TGG | 0.587113 | 4.3:-32023609 | MS.gene031827:CDS |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 4.3:+32025162 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 4.3:-32024548 | MS.gene031827:CDS |
| CCTCGCTGCTTCCATGACGA+TGG | 0.591174 | 4.3:-32024929 | MS.gene031827:CDS |
| CTTGAACGAGTTCATTAACG+TGG | 0.594211 | 4.3:+32024977 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 4.3:-32023927 | MS.gene031827:CDS |
| CGGAAGGAATTGTGACACTT+GGG | 0.601084 | 4.3:-32023817 | MS.gene031827:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 4.3:-32024423 | MS.gene031827:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 4.3:-32024764 | MS.gene031827:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 4.3:-32024715 | MS.gene031827:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 4.3:-32023984 | MS.gene031827:intron |
| CGAAGGTTATTGCGATGCAG+AGG | 0.615602 | 4.3:-32024627 | MS.gene031827:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.616761 | 4.3:-32024591 | MS.gene031827:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 4.3:+32023548 | None:intergenic |
| GATTGCTAAGATTAATGCTG+AGG | 0.627521 | 4.3:-32023693 | MS.gene031827:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 4.3:-32024963 | MS.gene031827:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 4.3:-32024512 | MS.gene031827:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 4.3:+32024787 | None:intergenic |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 4.3:-32024743 | MS.gene031827:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 4.3:+32023551 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 4.3:-32024347 | MS.gene031827:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 4.3:-32024644 | MS.gene031827:CDS |
| TGCGATGCAGAGGACAGGAG+AGG | 0.655127 | 4.3:-32024617 | MS.gene031827:CDS |
| GATAAAACTGAAGGTGCCAT+GGG | 0.656796 | 4.3:-32023608 | MS.gene031827:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 4.3:-32023728 | MS.gene031827:CDS |
| AATGGTGGTGATAATAGTGG+TGG | 0.661841 | 4.3:-32023632 | MS.gene031827:CDS |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 4.3:+32023509 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 4.3:+32025223 | None:intergenic |
| TACCGGTGAAAGGTCCAAGA+CGG | 0.673165 | 4.3:+32025146 | None:intergenic |
| TGGTTGGAGTGGCGATCATG+AGG | 0.675682 | 4.3:+32024997 | None:intergenic |
| AGTGGTGGTGATAAAACTGA+AGG | 0.688224 | 4.3:-32023617 | MS.gene031827:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 4.3:+32025048 | None:intergenic |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 4.3:-32024962 | MS.gene031827:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 4.3:+32025070 | None:intergenic |
| ATTAATGCTGAGGCTATACG+CGG | 0.715276 | 4.3:-32023683 | MS.gene031827:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 4.3:+32025068 | None:intergenic |
| CCATCGTCATGGAAGCAGCG+AGG | 0.728643 | 4.3:+32024929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAAAATTAATCATG+TGG | - | chr4.3:32024541-32024560 | MS.gene031827:CDS | 10.0% |
| !! | TTAATTGTATAATAATTCAT+AGG | + | chr4.3:32024452-32024471 | None:intergenic | 10.0% |
| !!! | AAATATTTACTTTTAAGTGT+TGG | - | chr4.3:32024685-32024704 | MS.gene031827:CDS | 15.0% |
| !!! | ATATTTTGAATTGAAGAATA+TGG | - | chr4.3:32024583-32024602 | MS.gene031827:CDS | 15.0% |
| !!! | TTTTTTGGTGATTAAAATTT+GGG | - | chr4.3:32024736-32024755 | MS.gene031827:CDS | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | - | chr4.3:32024480-32024499 | MS.gene031827:CDS | 20.0% |
| !! | TTCATAGGTAATATTAACTA+TGG | + | chr4.3:32024437-32024456 | None:intergenic | 20.0% |
| !!! | CTTTTTTGGTGATTAAAATT+TGG | - | chr4.3:32024735-32024754 | MS.gene031827:CDS | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr4.3:32025098-32025117 | MS.gene031827:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr4.3:32023967-32023986 | MS.gene031827:CDS | 25.0% |
| ! | CTGCTATTATATAACTATAC+TGG | - | chr4.3:32024708-32024727 | MS.gene031827:CDS | 25.0% |
| ! | TAAAACTCAAAAAGAAAGCA+TGG | - | chr4.3:32023557-32023576 | MS.gene031827:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr4.3:32023966-32023985 | MS.gene031827:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr4.3:32025098-32025117 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr4.3:32024056-32024075 | MS.gene031827:intron | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | - | chr4.3:32024721-32024740 | MS.gene031827:CDS | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | + | chr4.3:32024624-32024643 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | + | chr4.3:32023740-32023759 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr4.3:32025101-32025120 | MS.gene031827:CDS | 30.0% | |
| CAATGCAAATGTTAAGCAAT+TGG | - | chr4.3:32023930-32023949 | MS.gene031827:CDS | 30.0% | |
| TAAGTTTGGCATATTTGAGA+AGG | + | chr4.3:32023726-32023745 | None:intergenic | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr4.3:32024401-32024420 | MS.gene031827:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr4.3:32023528-32023547 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr4.3:32025090-32025109 | MS.gene031827:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr4.3:32025017-32025036 | MS.gene031827:CDS | 30.0% |
| ! | ATTAAAATTTGGGATGGTGT+AGG | - | chr4.3:32024746-32024765 | MS.gene031827:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr4.3:32025020-32025039 | MS.gene031827:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr4.3:32024055-32024074 | MS.gene031827:intron | 30.0% |
| ! | TTAAGAGCTTTTGTCAGATA+AGG | + | chr4.3:32025261-32025280 | None:intergenic | 30.0% |
| ! | TTGGTGATTAAAATTTGGGA+TGG | - | chr4.3:32024740-32024759 | MS.gene031827:CDS | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr4.3:32024191-32024210 | MS.gene031827:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr4.3:32024998-32025017 | MS.gene031827:CDS | 35.0% | |
| AAGCTGAAAAGTGAAAAGGT+TGG | + | chr4.3:32024620-32024639 | None:intergenic | 35.0% | |
| ACTTCGAATGTGTAGTTTAC+CGG | + | chr4.3:32023622-32023641 | None:intergenic | 35.0% | |
| AGAGCTATACGCAAAGAAAA+AGG | - | chr4.3:32024905-32024924 | MS.gene031827:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr4.3:32024815-32024834 | MS.gene031827:CDS | 35.0% | |
| GAAACAGTTGTGATCTATGT+TGG | - | chr4.3:32024649-32024668 | MS.gene031827:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr4.3:32023659-32023678 | None:intergenic | 35.0% | |
| GATTGCTAAGATTAATGCTG+AGG | - | chr4.3:32025055-32025074 | MS.gene031827:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr4.3:32024042-32024061 | MS.gene031827:intron | 35.0% | |
| GCTGTACAAGAAACAAAAAG+AGG | - | chr4.3:32024788-32024807 | MS.gene031827:CDS | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr4.3:32023964-32023983 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr4.3:32023517-32023536 | MS.gene031827:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr4.3:32025203-32025222 | None:intergenic | 35.0% | |
| TGCAAATGTTAAGCAATTGG+TGG | - | chr4.3:32023933-32023952 | MS.gene031827:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr4.3:32023568-32023587 | MS.gene031827:CDS | 35.0% |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr4.3:32025113-32025132 | MS.gene031827:CDS | 35.0% |
| ! | ACTATGGACTAAACTAACCT+TGG | + | chr4.3:32024421-32024440 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr4.3:32024060-32024079 | MS.gene031827:intron | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | + | chr4.3:32024392-32024411 | None:intergenic | 35.0% |
| !! | CAGCTTGAGTTGAATCAATT+CGG | - | chr4.3:32023895-32023914 | MS.gene031827:CDS | 35.0% |
| AACGAGTTCATTAACGTGGT+TGG | + | chr4.3:32023770-32023789 | None:intergenic | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr4.3:32024157-32024176 | MS.gene031827:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr4.3:32025159-32025178 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr4.3:32024975-32024994 | MS.gene031827:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr4.3:32024325-32024344 | MS.gene031827:intron | 40.0% | |
| ATACGCAAAGAAAAAGGAGG+CGG | - | chr4.3:32024911-32024930 | MS.gene031827:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr4.3:32025158-32025177 | MS.gene031827:CDS | 40.0% | |
| ATGTGTAGTTTACCGGTGAA+AGG | + | chr4.3:32023615-32023634 | None:intergenic | 40.0% | |
| ATTAATGCTGAGGCTATACG+CGG | - | chr4.3:32025065-32025084 | MS.gene031827:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr4.3:32023772-32023791 | MS.gene031827:CDS | 40.0% | |
| CTTGAACGAGTTCATTAACG+TGG | + | chr4.3:32023774-32023793 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr4.3:32024104-32024123 | MS.gene031827:intron | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr4.3:32024997-32025016 | MS.gene031827:CDS | 40.0% | |
| GCTATACGCAAAGAAAAAGG+AGG | - | chr4.3:32024908-32024927 | MS.gene031827:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr4.3:32024764-32024783 | MS.gene031827:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr4.3:32024033-32024052 | MS.gene031827:intron | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | - | chr4.3:32023785-32023804 | MS.gene031827:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr4.3:32025200-32025219 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr4.3:32024763-32024782 | MS.gene031827:CDS | 40.0% | |
| ! | AATGGTGGTGATAATAGTGG+TGG | - | chr4.3:32025116-32025135 | MS.gene031827:CDS | 40.0% |
| ! | AGTGGTGGTGATAAAACTGA+AGG | - | chr4.3:32025131-32025150 | MS.gene031827:CDS | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr4.3:32024236-32024255 | MS.gene031827:intron | 40.0% |
| !! | GATAAAACTGAAGGTGCCAT+GGG | - | chr4.3:32025140-32025159 | MS.gene031827:CDS | 40.0% |
| !! | TGATAAAACTGAAGGTGCCA+TGG | - | chr4.3:32025139-32025158 | MS.gene031827:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr4.3:32025209-32025228 | MS.gene031827:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr4.3:32023683-32023702 | None:intergenic | 45.0% | |
| CGGAAGGAATTGTGACACTT+GGG | - | chr4.3:32024931-32024950 | MS.gene031827:CDS | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | - | chr4.3:32023786-32023805 | MS.gene031827:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr4.3:32024312-32024331 | MS.gene031827:intron | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr4.3:32023784-32023803 | MS.gene031827:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr4.3:32024200-32024219 | MS.gene031827:intron | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | - | chr4.3:32024005-32024024 | MS.gene031827:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr4.3:32024221-32024240 | MS.gene031827:intron | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | + | chr4.3:32024013-32024032 | None:intergenic | 45.0% | |
| GTTCATTAACGTGGTTGGAG+TGG | + | chr4.3:32023765-32023784 | None:intergenic | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr4.3:32024821-32024840 | MS.gene031827:CDS | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | - | chr4.3:32024004-32024023 | MS.gene031827:intron | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr4.3:32023984-32024003 | MS.gene031827:intron | 45.0% | |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr4.3:32023670-32023689 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr4.3:32025233-32025252 | MS.gene031827:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr4.3:32023504-32023523 | None:intergenic | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr4.3:32024121-32024140 | MS.gene031827:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr4.3:32023703-32023722 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr4.3:32023833-32023852 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr4.3:32023681-32023700 | None:intergenic | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | + | chr4.3:32025245-32025264 | None:intergenic | 50.0% | |
| GCAAAGAAAAAGGAGGCGGA+AGG | - | chr4.3:32024915-32024934 | MS.gene031827:CDS | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr4.3:32025220-32025239 | None:intergenic | 50.0% | |
| GCGGAAGGAATTGTGACACT+TGG | - | chr4.3:32024930-32024949 | MS.gene031827:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr4.3:32023682-32023701 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr4.3:32024942-32024961 | MS.gene031827:CDS | 50.0% | |
| GTTATTGCGATGCAGAGGAC+AGG | - | chr4.3:32024126-32024145 | MS.gene031827:intron | 50.0% | |
| TACCGGTGAAAGGTCCAAGA+CGG | + | chr4.3:32023605-32023624 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr4.3:32024241-32024260 | MS.gene031827:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr4.3:32023943-32023962 | MS.gene031827:CDS | 50.0% |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr4.3:32023835-32023854 | MS.gene031827:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr4.3:32024296-32024315 | MS.gene031827:intron | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr4.3:32023589-32023608 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr4.3:32025242-32025261 | None:intergenic | 55.0% | |
| ACAGGAGAGGGTGACAAGGA+GGG | - | chr4.3:32024144-32024163 | MS.gene031827:intron | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | - | chr4.3:32024287-32024306 | MS.gene031827:intron | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr4.3:32023590-32023609 | None:intergenic | 55.0% | |
| CACCGTCTTGGACCTTTCAC+CGG | - | chr4.3:32023600-32023619 | MS.gene031827:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr4.3:32025232-32025251 | MS.gene031827:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr4.3:32023676-32023695 | MS.gene031827:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | - | chr4.3:32024281-32024300 | MS.gene031827:intron | 55.0% | |
| TGAAAGGTCCAAGACGGTGC+AGG | + | chr4.3:32023599-32023618 | None:intergenic | 55.0% | |
| TGCTCAGGTGGCTGAAGTTG+AGG | - | chr4.3:32024272-32024291 | MS.gene031827:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr4.3:32023825-32023844 | MS.gene031827:CDS | 55.0% | |
| TGGTTGGAGTGGCGATCATG+AGG | + | chr4.3:32023754-32023773 | None:intergenic | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr4.3:32024295-32024314 | MS.gene031827:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr4.3:32024248-32024267 | MS.gene031827:intron | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | - | chr4.3:32024842-32024861 | MS.gene031827:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr4.3:32023696-32023715 | MS.gene031827:CDS | 55.0% |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr4.3:32025228-32025247 | MS.gene031827:CDS | 60.0% | |
| CCATCGTCATGGAAGCAGCG+AGG | + | chr4.3:32023822-32023841 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACGA+TGG | - | chr4.3:32023819-32023838 | MS.gene031827:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr4.3:32023822-32023841 | MS.gene031827:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr4.3:32023588-32023607 | MS.gene031827:CDS | 60.0% | |
| GACAGGAGAGGGTGACAAGG+AGG | - | chr4.3:32024143-32024162 | MS.gene031827:intron | 60.0% | |
| GAGGACAGGAGAGGGTGACA+AGG | - | chr4.3:32024140-32024159 | MS.gene031827:intron | 60.0% | |
| GCGATGCAGAGGACAGGAGA+GGG | - | chr4.3:32024132-32024151 | MS.gene031827:intron | 60.0% | |
| TGCGATGCAGAGGACAGGAG+AGG | - | chr4.3:32024131-32024150 | MS.gene031827:intron | 60.0% | |
| TTCAGCCACCTGAGCAGCCT+TGG | + | chr4.3:32024268-32024287 | None:intergenic | 60.0% | |
| TTGGACCAAGGCTGCTCAGG+TGG | - | chr4.3:32024260-32024279 | MS.gene031827:intron | 60.0% | |
| GGCTTGGACCAAGGCTGCTC+AGG | - | chr4.3:32024257-32024276 | MS.gene031827:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32023490 | 32025280 | 32023490 | ID=MS.gene031827 |
| chr4.3 | mRNA | 32023490 | 32025280 | 32023490 | ID=MS.gene031827.t1;Parent=MS.gene031827 |
| chr4.3 | exon | 32024348 | 32025280 | 32024348 | ID=MS.gene031827.t1.exon1;Parent=MS.gene031827.t1 |
| chr4.3 | CDS | 32024348 | 32025280 | 32024348 | ID=cds.MS.gene031827.t1;Parent=MS.gene031827.t1 |
| chr4.3 | exon | 32023490 | 32024002 | 32023490 | ID=MS.gene031827.t1.exon2;Parent=MS.gene031827.t1 |
| chr4.3 | CDS | 32023490 | 32024002 | 32023490 | ID=cds.MS.gene031827.t1;Parent=MS.gene031827.t1 |
| Gene Sequence |
| Protein sequence |
