Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80218.t1 | XP_003603333.2 | 86.2 | 477 | 33 | 2 | 3 | 450 | 1 | 473 | 1.10E-167 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80218.t1 | D2XNR1 | 86.2 | 477 | 33 | 2 | 3 | 450 | 1 | 473 | 2.6e-170 | 599.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80218.t1 | G7JAE5 | 86.2 | 477 | 33 | 2 | 3 | 450 | 1 | 473 | 7.8e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051171 | MS.gene80218 | 0.808605 | 2.85E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene80218 | 0.82909 | 6.25E-55 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80218.t1 | MTR_3g106420 | 87.683 | 479 | 30 | 1 | 1 | 450 | 1 | 479 | 0.0 | 845 |
| MS.gene80218.t1 | MTR_3g106485 | 86.583 | 477 | 31 | 3 | 3 | 450 | 1 | 473 | 0.0 | 823 |
| MS.gene80218.t1 | MTR_1g083190 | 86.013 | 479 | 30 | 2 | 1 | 450 | 1 | 471 | 0.0 | 822 |
| MS.gene80218.t1 | MTR_3g106480 | 85.115 | 477 | 42 | 1 | 3 | 450 | 1 | 477 | 0.0 | 820 |
| MS.gene80218.t1 | MTR_1g071130 | 87.361 | 451 | 51 | 2 | 3 | 450 | 1 | 448 | 0.0 | 806 |
| MS.gene80218.t1 | MTR_3g106430 | 84.696 | 477 | 40 | 3 | 3 | 450 | 1 | 473 | 0.0 | 800 |
| MS.gene80218.t1 | MTR_1g073400 | 82.600 | 477 | 50 | 2 | 3 | 450 | 1 | 473 | 0.0 | 793 |
| MS.gene80218.t1 | MTR_1g115145 | 82.526 | 475 | 53 | 4 | 3 | 450 | 1 | 472 | 0.0 | 780 |
| MS.gene80218.t1 | MTR_3g106470 | 80.625 | 480 | 8 | 3 | 1 | 451 | 30 | 453 | 0.0 | 744 |
| MS.gene80218.t1 | MTR_8g063830 | 73.978 | 465 | 51 | 6 | 3 | 437 | 1 | 425 | 0.0 | 646 |
| MS.gene80218.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 3.12e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80218.t1 | AT5G25260 | 68.776 | 474 | 107 | 3 | 3 | 447 | 1 | 462 | 0.0 | 663 |
| MS.gene80218.t1 | AT5G25250 | 67.992 | 478 | 110 | 3 | 3 | 451 | 1 | 464 | 0.0 | 654 |
| MS.gene80218.t1 | AT5G64870 | 66.247 | 477 | 121 | 2 | 4 | 451 | 3 | 468 | 0.0 | 625 |
Find 102 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.044243 | 3.4:-92862192 | MS.gene80218:CDS |
| CAACTTGAGTTGAATCAATT+TGG | 0.187809 | 3.4:-92862263 | MS.gene80218:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.4:-92860751 | MS.gene80218:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.283314 | 3.4:-92862191 | MS.gene80218:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.4:-92861863 | MS.gene80218:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.4:+92862391 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.312153 | 3.4:-92860612 | MS.gene80218:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.4:-92862116 | MS.gene80218:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.4:-92860824 | MS.gene80218:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.4:-92862482 | MS.gene80218:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3.4:+92862539 | None:intergenic |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.4:+92860746 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.4:-92860743 | MS.gene80218:CDS |
| GTTATTTCGCTGCAGAGAAC+TGG | 0.390936 | 3.4:-92862032 | MS.gene80218:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.404543 | 3.4:-92862103 | MS.gene80218:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.4:-92862641 | MS.gene80218:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.4:-92861078 | MS.gene80218:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.4:-92862462 | MS.gene80218:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.4:-92862386 | MS.gene80218:CDS |
| CGGTCAATCCTGCTCCGTCT+TGG | 0.421815 | 3.4:-92862570 | MS.gene80218:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.453058 | 3.4:+92862421 | None:intergenic |
| CAATGCGAATGTTAAGCAAC+TGG | 0.456641 | 3.4:-92862228 | MS.gene80218:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.466301 | 3.4:-92860611 | MS.gene80218:CDS |
| CAAGACGGAGCAGGATTGAC+CGG | 0.473034 | 3.4:+92862571 | None:intergenic |
| TGGACTAATGGTGGTGATAG+TGG | 0.473313 | 3.4:-92860731 | MS.gene80218:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 3.4:-92862590 | MS.gene80218:CDS |
| CGGGCATGTTGCCTCCTGCT+TGG | 0.479649 | 3.4:-92860616 | MS.gene80218:CDS |
| GGCTGAAGTAGAGGCGAAGA+AGG | 0.482630 | 3.4:-92861877 | MS.gene80218:CDS |
| GAAACAACTACACTGCTGTA+AGG | 0.484359 | 3.4:-92860844 | MS.gene80218:CDS |
| TAAGACTGTCCATGAGCAAA+CGG | 0.494142 | 3.4:-92860636 | MS.gene80218:CDS |
| AGTACACTTCTCAATGTACT+TGG | 0.498626 | 3.4:-92860866 | MS.gene80218:CDS |
| CTCAAGTCCGCGTACTGCCT+CGG | 0.500340 | 3.4:+92860769 | None:intergenic |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.4:+92862479 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3.4:-92862154 | MS.gene80218:CDS |
| CAGTGTTCAATATGAAACTA+AGG | 0.509433 | 3.4:-92861757 | MS.gene80218:intron |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.4:-92861026 | MS.gene80218:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 3.4:-92862333 | MS.gene80218:CDS |
| CTCCGTCTTGGACCTCTCAC+CGG | 0.514067 | 3.4:-92862558 | MS.gene80218:CDS |
| CTAAGGGATGCTGAGTTACA+AGG | 0.517627 | 3.4:-92861846 | MS.gene80218:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.4:+92862491 | None:intergenic |
| GCAACATGCCCGTTTGCTCA+TGG | 0.523503 | 3.4:+92860627 | None:intergenic |
| AAGCAACTGGTGGATGTGCC+TGG | 0.524212 | 3.4:-92862215 | MS.gene80218:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.4:-92861862 | MS.gene80218:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.4:+92862502 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+GGG | 0.532359 | 3.4:-92860635 | MS.gene80218:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.4:-92860740 | MS.gene80218:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.4:+92862435 | None:intergenic |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92860688 | None:intergenic |
| TGAGAGGTCCAAGACGGAGC+AGG | 0.535402 | 3.4:+92862562 | None:intergenic |
| GGCTCAGGTGGCTGAAGTAG+AGG | 0.543694 | 3.4:-92861886 | MS.gene80218:intron |
| ATTGAACACTGGCTTTGCTA+AGG | 0.543911 | 3.4:+92861769 | None:intergenic |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.4:-92860911 | MS.gene80218:CDS |
| GATAAGGCTCCCATCCAAGC+AGG | 0.548081 | 3.4:+92860602 | None:intergenic |
| AACTGGAGAGGGTGACAAAG+AGG | 0.551759 | 3.4:-92862015 | MS.gene80218:CDS |
| CTTAGTTTCATATTGAACAC+TGG | 0.552173 | 3.4:+92861758 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.4:-92861988 | MS.gene80218:intron |
| AAACAACTACACTGCTGTAA+GGG | 0.568312 | 3.4:-92860843 | MS.gene80218:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 3.4:-92862601 | MS.gene80218:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.4:+92862328 | None:intergenic |
| AGTAGAGGCGAAGAAGGCCG+TGG | 0.579775 | 3.4:-92861871 | MS.gene80218:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92860686 | MS.gene80218:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 3.4:-92860999 | MS.gene80218:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.4:-92860899 | MS.gene80218:CDS |
| AAGACGGAGCAGGATTGACC+GGG | 0.589066 | 3.4:+92862572 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.4:-92860910 | MS.gene80218:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.4:-92861020 | MS.gene80218:CDS |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3.4:+92862526 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.4:-92862374 | MS.gene80218:CDS |
| ATTGGTTCGAAATTGAGGCA+AGG | 0.608694 | 3.4:-92862098 | MS.gene80218:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.4:-92861833 | MS.gene80218:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.4:-92862125 | MS.gene80218:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.4:-92861077 | MS.gene80218:intron |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3.4:+92862546 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.4:+92860644 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.620084 | 3.4:-92862336 | MS.gene80218:CDS |
| TTCGCTGCAGAGAACTGGAG+AGG | 0.620124 | 3.4:-92862027 | MS.gene80218:CDS |
| ACTGGAGAGGGTGACAAAGA+GGG | 0.620203 | 3.4:-92862014 | MS.gene80218:CDS |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.4:-92862174 | MS.gene80218:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.626113 | 3.4:-92862373 | MS.gene80218:CDS |
| ATTAATGCCGAGGCAGTACG+CGG | 0.627180 | 3.4:-92860776 | MS.gene80218:CDS |
| GGGACTTTATCGTGTAGCAA+AGG | 0.633548 | 3.4:-92862666 | MS.gene80218:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 3.4:+92862197 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3.4:-92862153 | MS.gene80218:CDS |
| CTCAGCATCCCTTAGAGCCA+CGG | 0.641954 | 3.4:+92861854 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92860786 | MS.gene80218:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.4:-92861053 | MS.gene80218:CDS |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3.4:-92862339 | MS.gene80218:CDS |
| TCGCTGCAGAGAACTGGAGA+GGG | 0.653793 | 3.4:-92862026 | MS.gene80218:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 3.4:+92860647 | None:intergenic |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.656829 | 3.4:+92862556 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.4:-92860821 | MS.gene80218:CDS |
| TGCGAATGTTAAGCAACTGG+TGG | 0.658886 | 3.4:-92862225 | MS.gene80218:CDS |
| AAGGCTCCCATCCAAGCAGG+AGG | 0.676037 | 3.4:+92860605 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3.4:-92862144 | MS.gene80218:CDS |
| ACAAAGAGGGAATTAAAGTG+AGG | 0.688934 | 3.4:-92862001 | MS.gene80218:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.4:+92862458 | None:intergenic |
| ACTAATGGTGGTGATAGTGG+TGG | 0.697741 | 3.4:-92860728 | MS.gene80218:CDS |
| TTAGAATACCTGTTATCACA+AGG | 0.699616 | 3.4:+92862633 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.712596 | 3.4:-92862372 | MS.gene80218:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.4:+92862480 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.4:+92862478 | None:intergenic |
| TGATTGGAGTGTCTATCATG+CGG | 0.778717 | 3.4:+92862407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTATACTTTAATAT+TGG | - | chr3.4:92862069-92862088 | MS.gene80218:CDS | 10.0% |
| !! | CATTTGGTTAAAAATTAAAA+GGG | + | chr3.4:92861718-92861737 | None:intergenic | 15.0% |
| !! | TCATTTGGTTAAAAATTAAA+AGG | + | chr3.4:92861719-92861738 | None:intergenic | 15.0% |
| !!! | AGTTTCATTTTTTAAACAAT+TGG | - | chr3.4:92861909-92861928 | MS.gene80218:intron | 15.0% |
| !!! | ATATTTTAAAGACCAATTAA+AGG | - | chr3.4:92861795-92861814 | MS.gene80218:CDS | 15.0% |
| !!! | AATTCTCTATAAAGCTTTAA+TGG | + | chr3.4:92861966-92861985 | None:intergenic | 20.0% |
| !!! | ACAATTTGATATGTTTTGAT+AGG | - | chr3.4:92861602-92861621 | MS.gene80218:intron | 20.0% |
| !!! | ATGTTTTCAATATTTAGTGT+TGG | - | chr3.4:92862096-92862115 | MS.gene80218:CDS | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | chr3.4:92861878-92861897 | MS.gene80218:CDS | 20.0% |
| ! | AAAGTTGTGTATCCTTTAAT+TGG | + | chr3.4:92861810-92861829 | None:intergenic | 25.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.4:92860866-92860885 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.4:92862511-92862530 | MS.gene80218:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.4:92861063-92861082 | MS.gene80218:CDS | 25.0% |
| ! | CTTTAATGGTGAAAAAAAAC+AGG | + | chr3.4:92861952-92861971 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.4:92861062-92861081 | MS.gene80218:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.4:92862511-92862530 | None:intergenic | 25.0% |
| ! | TTTATTGATACTTATCACCA+AGG | + | chr3.4:92862005-92862024 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTGATTGAAACTT+TGG | - | chr3.4:92862149-92862168 | MS.gene80218:CDS | 25.0% |
| AGGTGTAGAAGATTAATGAT+AGG | - | chr3.4:92861764-92861783 | MS.gene80218:CDS | 30.0% | |
| ATCACTGTGATTAAAGTTGT+TGG | - | chr3.4:92861632-92861651 | MS.gene80218:intron | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.4:92862514-92862533 | MS.gene80218:CDS | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | - | chr3.4:92861497-92861516 | MS.gene80218:intron | 30.0% | |
| CTTAGTTTCATATTGAACAC+TGG | + | chr3.4:92861499-92861518 | None:intergenic | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | - | chr3.4:92862321-92862340 | MS.gene80218:CDS | 30.0% | |
| TTAGAATACCTGTTATCACA+AGG | + | chr3.4:92860624-92860643 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.4:92862503-92862522 | MS.gene80218:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.4:92862430-92862449 | MS.gene80218:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.4:92860868-92860887 | MS.gene80218:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.4:92862433-92862452 | MS.gene80218:CDS | 30.0% |
| ! | GCAATTCTATTTTACTAGCT+AGG | - | chr3.4:92861569-92861588 | MS.gene80218:intron | 30.0% |
| ! | TTAACAGTATTTTACAGCCT+TGG | - | chr3.4:92861985-92862004 | MS.gene80218:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | - | chr3.4:92860991-92861010 | MS.gene80218:CDS | 30.0% |
| !!! | GTACTACTGAATCACTTTTT+TGG | - | chr3.4:92862134-92862153 | MS.gene80218:CDS | 30.0% |
| AAACAACTACACTGCTGTAA+GGG | - | chr3.4:92862411-92862430 | MS.gene80218:CDS | 35.0% | |
| ACAAAGAGGGAATTAAAGTG+AGG | - | chr3.4:92861253-92861272 | MS.gene80218:intron | 35.0% | |
| ACTCTTGATCAATGGACAAT+AGG | - | chr3.4:92861744-92861763 | MS.gene80218:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.4:92862228-92862247 | MS.gene80218:CDS | 35.0% | |
| AGTACACTTCTCAATGTACT+TGG | - | chr3.4:92862388-92862407 | MS.gene80218:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.4:92860836-92860855 | None:intergenic | 35.0% | |
| ATTGAAACTTTGGATGGTGT+AGG | - | chr3.4:92862159-92862178 | MS.gene80218:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.4:92860755-92860774 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.4:92861138-92861157 | MS.gene80218:intron | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr3.4:92860653-92860672 | MS.gene80218:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.4:92860822-92860841 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr3.4:92861060-92861079 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.4:92860613-92860632 | MS.gene80218:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.4:92862613-92862632 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.4:92860881-92860900 | MS.gene80218:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr3.4:92860664-92860683 | MS.gene80218:CDS | 35.0% |
| ! | TTAAGGGCTTTTCTCAGATA+AGG | + | chr3.4:92862671-92862690 | None:intergenic | 35.0% |
| ! | TTGGTGATTGAAACTTTGGA+TGG | - | chr3.4:92862153-92862172 | MS.gene80218:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.4:92861151-92861170 | MS.gene80218:intron | 35.0% |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr3.4:92860731-92860750 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92862569-92862588 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.4:92861421-92861440 | MS.gene80218:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92862568-92862587 | MS.gene80218:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.4:92862329-92862348 | MS.gene80218:CDS | 40.0% | |
| CAATGCGAATGTTAAGCAAC+TGG | - | chr3.4:92861026-92861045 | MS.gene80218:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.4:92860880-92860899 | MS.gene80218:CDS | 40.0% | |
| GAAACAACTACACTGCTGTA+AGG | - | chr3.4:92862410-92862429 | MS.gene80218:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92862468-92862487 | MS.gene80218:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.4:92862328-92862347 | MS.gene80218:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.4:92862201-92862220 | MS.gene80218:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.4:92862177-92862196 | MS.gene80218:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.4:92861266-92861285 | MS.gene80218:intron | 40.0% | |
| TAAGACTGTCCATGAGCAAA+CGG | - | chr3.4:92862618-92862637 | MS.gene80218:CDS | 40.0% | |
| TGAGTCACACTCTTGATCAA+TGG | - | chr3.4:92861736-92861755 | MS.gene80218:intron | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.4:92862327-92862346 | MS.gene80218:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.4:92862610-92862629 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.4:92862176-92862195 | MS.gene80218:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.4:92860882-92860901 | MS.gene80218:CDS | 40.0% | |
| TTCTGAGTAGGCTAAGAAGA+AGG | - | chr3.4:92861329-92861348 | MS.gene80218:intron | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr3.4:92860718-92860737 | None:intergenic | 40.0% |
| ! | AGTGGTGGTGAAAAAACTGA+AGG | - | chr3.4:92862541-92862560 | MS.gene80218:CDS | 40.0% |
| ! | GATCAAGAGTGTGACTCATT+TGG | + | chr3.4:92861734-92861753 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+CGG | + | chr3.4:92860850-92860869 | None:intergenic | 40.0% |
| !! | ATTGAACACTGGCTTTGCTA+AGG | + | chr3.4:92861488-92861507 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | - | chr3.4:92861156-92861175 | MS.gene80218:intron | 40.0% |
| !! | GAAAAAACTGAAGGTGCCAT+GGG | - | chr3.4:92862550-92862569 | MS.gene80218:CDS | 40.0% |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | - | chr3.4:92861287-92861306 | MS.gene80218:intron | 40.0% |
| !! | TGAAAAAACTGAAGGTGCCA+TGG | - | chr3.4:92862549-92862568 | MS.gene80218:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+GGG | - | chr3.4:92862619-92862638 | MS.gene80218:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.4:92860779-92860798 | None:intergenic | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.4:92861408-92861427 | MS.gene80218:intron | 45.0% | |
| GGGACTTTATCGTGTAGCAA+AGG | - | chr3.4:92860588-92860607 | MS.gene80218:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3.4:92861129-92861148 | MS.gene80218:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92862234-92862253 | MS.gene80218:CDS | 45.0% | |
| TGCGAATGTTAAGCAACTGG+TGG | - | chr3.4:92861029-92861048 | MS.gene80218:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | - | chr3.4:92861222-92861241 | MS.gene80218:intron | 45.0% |
| ! | TGGACTAATGGTGGTGATAG+TGG | - | chr3.4:92862523-92862542 | MS.gene80218:CDS | 45.0% |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3.4:92861080-92861099 | MS.gene80218:intron | 45.0% |
| !! | ACTAATGGTGGTGATAGTGG+TGG | - | chr3.4:92862526-92862545 | MS.gene80218:CDS | 45.0% |
| AACTGGAGAGGGTGACAAAG+AGG | - | chr3.4:92861239-92861258 | MS.gene80218:intron | 50.0% | |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.4:92860766-92860785 | None:intergenic | 50.0% | |
| ACTGGAGAGGGTGACAAAGA+GGG | - | chr3.4:92861240-92861259 | MS.gene80218:intron | 50.0% | |
| AGGCTAAGAAGAAGGCAGCT+TGG | - | chr3.4:92861337-92861356 | MS.gene80218:intron | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr3.4:92860711-92860730 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.4:92862643-92862662 | MS.gene80218:CDS | 50.0% | |
| ATTAATGCCGAGGCAGTACG+CGG | - | chr3.4:92862478-92862497 | MS.gene80218:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.4:92862344-92862363 | MS.gene80218:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.4:92860799-92860818 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.4:92860929-92860948 | None:intergenic | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | - | chr3.4:92861344-92861363 | MS.gene80218:intron | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3.4:92861110-92861129 | MS.gene80218:intron | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | - | chr3.4:92861296-92861315 | MS.gene80218:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.4:92860777-92860796 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3.4:92861101-92861120 | MS.gene80218:intron | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.4:92860778-92860797 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.4:92862355-92862374 | MS.gene80218:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3.4:92861100-92861119 | MS.gene80218:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.4:92860931-92860950 | MS.gene80218:CDS | 50.0% |
| ! | ACTTGCTGCTTCCATGACGA+TGG | - | chr3.4:92860915-92860934 | MS.gene80218:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr3.4:92862255-92862274 | MS.gene80218:CDS | 50.0% |
| AAGACGGAGCAGGATTGACC+GGG | + | chr3.4:92860685-92860704 | None:intergenic | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | + | chr3.4:92860686-92860705 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.4:92862642-92862661 | MS.gene80218:CDS | 55.0% | |
| CTCAGCATCCCTTAGAGCCA+CGG | + | chr3.4:92861403-92861422 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.4:92860772-92860791 | MS.gene80218:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | - | chr3.4:92861347-92861366 | MS.gene80218:intron | 55.0% | |
| GATAAGGCTCCCATCCAAGC+AGG | + | chr3.4:92862655-92862674 | None:intergenic | 55.0% | |
| GCAACATGCCCGTTTGCTCA+TGG | + | chr3.4:92862630-92862649 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.4:92862343-92862362 | MS.gene80218:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+AGG | - | chr3.4:92861317-92861336 | MS.gene80218:intron | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | - | chr3.4:92861377-92861396 | MS.gene80218:intron | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.4:92860701-92860720 | None:intergenic | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | - | chr3.4:92861299-92861318 | MS.gene80218:intron | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | - | chr3.4:92861228-92861247 | MS.gene80218:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.4:92860921-92860940 | MS.gene80218:CDS | 55.0% | |
| TTCGCTGCAGAGAACTGGAG+AGG | - | chr3.4:92861227-92861246 | MS.gene80218:intron | 55.0% | |
| ! | AAGCAACTGGTGGATGTGCC+TGG | - | chr3.4:92861039-92861058 | MS.gene80218:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr3.4:92860918-92860937 | MS.gene80218:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.4:92860792-92860811 | MS.gene80218:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.4:92861392-92861411 | MS.gene80218:intron | 55.0% |
| AAGGCTCCCATCCAAGCAGG+AGG | + | chr3.4:92862652-92862671 | None:intergenic | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | - | chr3.4:92861353-92861372 | MS.gene80218:intron | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | - | chr3.4:92861383-92861402 | MS.gene80218:intron | 60.0% | |
| CGGTCAATCCTGCTCCGTCT+TGG | - | chr3.4:92860684-92860703 | MS.gene80218:CDS | 60.0% | |
| CTCAAGTCCGCGTACTGCCT+CGG | + | chr3.4:92862488-92862507 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | - | chr3.4:92860696-92860715 | MS.gene80218:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | - | chr3.4:92861368-92861387 | MS.gene80218:intron | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | + | chr3.4:92860695-92860714 | None:intergenic | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.4:92861356-92861375 | MS.gene80218:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.4:92861391-92861410 | MS.gene80218:intron | 60.0% |
| CGGGCATGTTGCCTCCTGCT+TGG | - | chr3.4:92862638-92862657 | MS.gene80218:CDS | 65.0% | |
| GAGAGAGGCTGAAGTGGCGG+AGG | - | chr3.4:92861302-92861321 | MS.gene80218:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92860586 | 92862690 | 92860586 | ID=MS.gene80218 |
| chr3.4 | mRNA | 92860586 | 92862690 | 92860586 | ID=MS.gene80218.t1;Parent=MS.gene80218 |
| chr3.4 | exon | 92861989 | 92862690 | 92861989 | ID=MS.gene80218.t1.exon1;Parent=MS.gene80218.t1 |
| chr3.4 | CDS | 92861989 | 92862690 | 92861989 | ID=cds.MS.gene80218.t1;Parent=MS.gene80218.t1 |
| chr3.4 | exon | 92861758 | 92861901 | 92861758 | ID=MS.gene80218.t1.exon2;Parent=MS.gene80218.t1 |
| chr3.4 | CDS | 92861758 | 92861901 | 92861758 | ID=cds.MS.gene80218.t1;Parent=MS.gene80218.t1 |
| chr3.4 | exon | 92860586 | 92861095 | 92860586 | ID=MS.gene80218.t1.exon3;Parent=MS.gene80218.t1 |
| chr3.4 | CDS | 92860586 | 92861095 | 92860586 | ID=cds.MS.gene80218.t1;Parent=MS.gene80218.t1 |
| Gene Sequence |
| Protein sequence |
